HHsearch alignment for GI: 254780795 and conserved domain: COG2334
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only].
Probab=100.00 E-value=0 Score=439.61 Aligned_cols=313 Identities=33% Similarity=0.516 Sum_probs=285.8
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 96577089999999998489986053100466812001799943995899982166998899999999999853267755
Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCP 80 (316)
Q Consensus 1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP 80 (316)
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~l~s-~eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~ 83 (331)
T COG2334 5 MAVFTPLTSDEAAAALEAYHYGLDGSLRGLNS-EENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAERGIPVP 83 (331)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 22456758099999998457487544232333-46751788717997699982688887777999999999997599887
Q ss_pred CCCCCCHHHHHHHHCC--CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHH
Q ss_conf 5100102677875224--515578647887076-899899999999864367530687543323112456457---6675
Q gi|254780795|r 81 IPIPRNDGKLYGFLCK--KPANIFSFIKGSPLN-HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF---LWAK 154 (316)
Q Consensus 81 ~pi~~~~G~~~~~~~~--k~~~L~~~i~G~~~~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~---~~~~ 154 (316)
T Consensus 84 ~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~ 163 (331)
T COG2334 84 APLPSLDGELLEALSGGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALL 163 (331)
T ss_pred CCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 77616785611101478657999886699676778878999999999999999747797658873343220111115566
Q ss_pred HHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCC---EEECCCCCCCEEECCCC-CEEEECCCCCCCCHHHCCHHHHHHHHH
Q ss_conf 2001-552278899999998887652107774---44022346422562796-048731621356800019899998643
Q gi|254780795|r 155 CFDK-VDEDLKKEIDHEFCFLKESWPKNLPTG---IIHADLFPDNVLFYNNK-IMGLIDFYFSCNDFLMYDLSICINAWC 229 (316)
Q Consensus 155 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~Lp~g---~IHgDl~~~NiL~~~~~-i~giIDF~~~~~~~~i~DLAi~i~~~c 229 (316)
T Consensus 164 ~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~~~i~DlAi~l~~~- 242 (331)
T COG2334 164 RLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGYGWFIYDLAIALNAW- 242 (331)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHH-
T ss_conf 5314787767799999999999745332676555457667760347776898700078761124435999999999876-
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11688878788999998876418899899999999999999999999999876088512311268799999999997521
Q gi|254780795|r 230 FDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFHKQIS 309 (316)
Q Consensus 230 ~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~~~~~ 309 (316)
T Consensus 243 -~~d~~~~~~~~~a~l~GY~~v~pl~~~El~~Lp~l~r~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~ 321 (331)
T COG2334 243 -NGDEADPRAAIAAFLEGYEEVRPLTAAELELLPDLRRLRALRLWAWRLIRWLLPPAGRLWLKLDPAWLRRLLEFLEQIK 321 (331)
T ss_pred -HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf -2578764899999999865338899999987799999999999998877603687665102057205999999997400
Q ss_pred HHHHCCC
Q ss_conf 1785179
Q gi|254780795|r 310 SISEYGF 316 (316)
Q Consensus 310 ~~~~~~~ 316 (316)
T Consensus 322 ~~~~~~~ 328 (331)
T COG2334 322 ALDEPPL 328 (331)
T ss_pred CCCCCCC
T ss_conf 3354444