HHsearch alignment for GI: 254780795 and conserved domain: COG3001
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=99.73 E-value=7.6e-16 Score=122.19 Aligned_cols=226 Identities=15% Similarity=0.209 Sum_probs=142.1
Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHH
Q ss_conf 99848998605310046681200179994399589998216699889999999999985326-77555100102677875
Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGF 93 (316)
Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~ 93 (316)
T Consensus 9 lse~lg~~~i~er~~v~gG~inea~~v~dg~~~~FvK~n~~-~~~~~f~AEa~gL~~la~s~ti~VP~vi~~------G~ 81 (286)
T COG3001 9 LSEQLGEGEIKEREEVSGGDINEAWRLRDGTDPFFVKCNQR-EQLSMFTAEADGLELLARSNTITVPKVIAV------GA 81 (286)
T ss_pred HHHHHCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCH-HHHHHHHHHHHHHHHHHHCCCCCCCCEEEE------CC
T ss_conf 99870814444005568864020357513885247870625-678789998877999987187346615884------47
Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC---------CCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 22451557864788707689989999999986436753068--75---------43323112456457667520015522
Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FH---------LYRKNTLSPLNLKFLWAKCFDKVDED 162 (316)
Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~---------~~r~~~~~~~~~~~~~~~~~~~~~~~ 162 (316)
T Consensus 82 ~~~~sylVle~L~~~---~~d~~s~~~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlql 158 (286)
T COG3001 82 SRDHSYLVLEYLPTG---PLDAHSAFILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQL 158 (286)
T ss_pred CCCEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 787068998623679---99823689999999999861376566765666457878898772349999898652499999
Q ss_pred HH------HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHHHCCHHHHHHHHHHCCCC
Q ss_conf 78------89999999888765210777-44402234642256279604873162135-680001989999864311688
Q gi|254780795|r 163 LK------KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFLMYDLSICINAWCFDENN 234 (316)
Q Consensus 163 ~~------~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~i~DLAi~i~~~c~~~~~ 234 (316)
T Consensus 159 ar~rg~~f~did~~~~~i~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv-~f--DPA~y~GDrE~Dlam~e------lFg 229 (286)
T COG3001 159 ARERGLTFGDIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPV-IF--DPACYWGDRECDLAMLE------LFG 229 (286)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCE-EE--CCCCCCCCCCCCEEHHH------HHC
T ss_conf 9980898567999999999987227999530114522243223578973-54--65012688431310675------516
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHH--HHHHHH
Q ss_conf 87878899999887641889989--999999
Q gi|254780795|r 235 TYNPSRGFSILNGYNKVRKISEN--ELQSLP 263 (316)
Q Consensus 235 ~~d~~~~~~~l~gY~~vrpLs~~--E~~~l~ 263 (316)
T Consensus 230 gfp----~efy~gY~sv~PL~~G~~eRk~iY 256 (286)
T COG3001 230 GFP----PEFYDGYQSVSPLPAGYLERKPIY 256 (286)
T ss_pred CCC----HHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 776----999976640688987647776899