HHsearch alignment for GI: 254780795 and conserved domain: COG3001

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=99.73  E-value=7.6e-16  Score=122.19  Aligned_cols=226  Identities=15%  Similarity=0.209  Sum_probs=142.1

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHH
Q ss_conf             99848998605310046681200179994399589998216699889999999999985326-77555100102677875
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~   93 (316)
T Consensus         9 lse~lg~~~i~er~~v~gG~inea~~v~dg~~~~FvK~n~~-~~~~~f~AEa~gL~~la~s~ti~VP~vi~~------G~   81 (286)
T COG3001           9 LSEQLGEGEIKEREEVSGGDINEAWRLRDGTDPFFVKCNQR-EQLSMFTAEADGLELLARSNTITVPKVIAV------GA   81 (286)
T ss_pred             HHHHHCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCH-HHHHHHHHHHHHHHHHHHCCCCCCCCEEEE------CC
T ss_conf             99870814444005568864020357513885247870625-678789998877999987187346615884------47


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC---------CCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             22451557864788707689989999999986436753068--75---------43323112456457667520015522
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FH---------LYRKNTLSPLNLKFLWAKCFDKVDED  162 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~---------~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (316)
T Consensus        82 ~~~~sylVle~L~~~---~~d~~s~~~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlql  158 (286)
T COG3001          82 SRDHSYLVLEYLPTG---PLDAHSAFILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQL  158 (286)
T ss_pred             CCCEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             787068998623679---99823689999999999861376566765666457878898772349999898652499999


Q ss_pred             HH------HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHHHCCHHHHHHHHHHCCCC
Q ss_conf             78------89999999888765210777-44402234642256279604873162135-680001989999864311688
Q gi|254780795|r  163 LK------KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFLMYDLSICINAWCFDENN  234 (316)
Q Consensus       163 ~~------~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~i~DLAi~i~~~c~~~~~  234 (316)
T Consensus       159 ar~rg~~f~did~~~~~i~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv-~f--DPA~y~GDrE~Dlam~e------lFg  229 (286)
T COG3001         159 ARERGLTFGDIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPV-IF--DPACYWGDRECDLAMLE------LFG  229 (286)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCE-EE--CCCCCCCCCCCCEEHHH------HHC
T ss_conf             9980898567999999999987227999530114522243223578973-54--65012688431310675------516


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHH--HHHHHH
Q ss_conf             87878899999887641889989--999999
Q gi|254780795|r  235 TYNPSRGFSILNGYNKVRKISEN--ELQSLP  263 (316)
Q Consensus       235 ~~d~~~~~~~l~gY~~vrpLs~~--E~~~l~  263 (316)
T Consensus       230 gfp----~efy~gY~sv~PL~~G~~eRk~iY  256 (286)
T COG3001         230 GFP----PEFYDGYQSVSPLPAGYLERKPIY  256 (286)
T ss_pred             CCC----HHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             776----999976640688987647776899