HHsearch alignment for GI: 254780795 and conserved domain: PRK10359

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=98.44  E-value=7e-06  Score=57.70  Aligned_cols=161  Identities=15%  Similarity=0.256  Sum_probs=84.2

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHH--HHH------HHHHH---HHH
Q ss_conf             5770899999999984899860531004668120017999439958999821669988--999------99999---999
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK--DLP------VFIEL---LHY   71 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~--~l~------~~~~l---l~~   71 (316)
T Consensus        12 iy~~e~~~~y~el~~~~l~~~~k~~~v~k~~~~~~ValIei~~kkyIlK~~r~~~~~~eR~~~sf~kg~~~~~ll~~~~~   91 (232)
T PRK10359         12 VFYKDNDNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDR   91 (232)
T ss_pred             EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99627652499999999627615888523787526999997693799956740113589999999615799999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             85326775551001026778752245155786478870768998999999998643675306875433231124564576
Q gi|254780795|r   72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL  151 (316)
Q Consensus        72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~  151 (316)
T Consensus        92 ~~~~g~~~~~d~yl~aekk~~~~i~~s~~l~EYIEG~~l~~~~-------------------------------------  134 (232)
T PRK10359         92 VRSEGLAFLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP-------------------------------------  134 (232)
T ss_pred             HHHCCCCCCCCHHEEEEHHHCCEEEEEEEEEEEECCCCCCCHH-------------------------------------
T ss_conf             8871523123411243413155222365564322584456444-------------------------------------


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH
Q ss_conf             67520015522788999999988876521077744402234642256279604873162135680
Q gi|254780795|r  152 WAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF  216 (316)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~  216 (316)
T Consensus       135 ------dI~~~~k~~I~~~I~kLH~-------~G~~sGD~h~gNFi~t~~glr-IIDl--sgKk~  183 (232)
T PRK10359        135 ------EISEDVKAKIKASIESLHQ-------HGMVSGDPHKGNFIVSKDGLR-IIDL--SGKRC  183 (232)
T ss_pred             ------HCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCH
T ss_conf             ------3266689999999999987-------476258988664798589579-9988--77305