HHsearch alignment for GI: 254780795 and conserved domain: PRK10359
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=98.44 E-value=7e-06 Score=57.70 Aligned_cols=161 Identities=15% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHH--HHH------HHHHH---HHH
Q ss_conf 5770899999999984899860531004668120017999439958999821669988--999------99999---999
Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK--DLP------VFIEL---LHY 71 (316)
Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~--~l~------~~~~l---l~~ 71 (316)
T Consensus 12 iy~~e~~~~y~el~~~~l~~~~k~~~v~k~~~~~~ValIei~~kkyIlK~~r~~~~~~eR~~~sf~kg~~~~~ll~~~~~ 91 (232)
T PRK10359 12 VFYKDNDNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDR 91 (232)
T ss_pred EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99627652499999999627615888523787526999997693799956740113589999999615799999999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 85326775551001026778752245155786478870768998999999998643675306875433231124564576
Q gi|254780795|r 72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL 151 (316)
Q Consensus 72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~ 151 (316)
T Consensus 92 ~~~~g~~~~~d~yl~aekk~~~~i~~s~~l~EYIEG~~l~~~~------------------------------------- 134 (232)
T PRK10359 92 VRSEGLAFLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP------------------------------------- 134 (232)
T ss_pred HHHCCCCCCCCHHEEEEHHHCCEEEEEEEEEEEECCCCCCCHH-------------------------------------
T ss_conf 8871523123411243413155222365564322584456444-------------------------------------
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH
Q ss_conf 67520015522788999999988876521077744402234642256279604873162135680
Q gi|254780795|r 152 WAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF 216 (316)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~ 216 (316)
T Consensus 135 ------dI~~~~k~~I~~~I~kLH~-------~G~~sGD~h~gNFi~t~~glr-IIDl--sgKk~ 183 (232)
T PRK10359 135 ------EISEDVKAKIKASIESLHQ-------HGMVSGDPHKGNFIVSKDGLR-IIDL--SGKRC 183 (232)
T ss_pred ------HCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCH
T ss_conf ------3266689999999999987-------476258988664798589579-9988--77305