HHsearch alignment for GI: 254780795 and conserved domain: cd00180

>cd00180 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.
Probab=97.90  E-value=0.00032  Score=46.98  Aligned_cols=137  Identities=19%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             0046681200179994-399-5899982166-9988---99999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
T Consensus         6 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~iv   77 (256)
T cd00180           6 EKLGKGAFGKVYLARDKKTGELVAIKIIKKKKEKKKQVERILREIKILKRLNH-----PNIVKLYD---VFEDEDKLYLV   77 (256)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE
T ss_conf             89841878499999998999899999983344898999999999999997799-----69995999---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
T Consensus        78 mEy~~gg~L~~~-----------i---~~~-~~l~--------~~~~------------~~i~~qi~~aL~ylH~-----  117 (256)
T cd00180          78 MEYMSGGDLFDL-----------L---KKR-GRLS--------EDEA------------RFYFRQILSGLEYLHS-----  117 (256)
T ss_pred             EECCCCCCHHHH-----------H---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-----
T ss_conf             978899868999-----------9---876-9999--------9999------------9999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             777444022346422562796048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
T Consensus       118 --~~iiHRDiKp~NILl~~~~~vKL~DFGla~~  148 (256)
T cd00180         118 --KGIIHRDLKPENILLDEDGHVKIADFGLAKQ  148 (256)
T ss_pred             --CCCEEEECCHHHEEECCCCCEEEEECCCCEE
T ss_conf             --9967744577987998999899997888657