HHsearch alignment for GI: 254780795 and conserved domain: cd05041

>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=97.47  E-value=0.0038  Score=40.01  Aligned_cols=136  Identities=16%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             ECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             046681200179994399-589998216699889---9999999999853267755510010267787522451557864
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
T Consensus         2 ~lG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~~~-g--~~~~~~~~~lvmEy   73 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGKTEVAVKTCRSTLPPDLKRKFLQEAEILKQYD-----HPNIVKLI-G--VCVQKQPIYIVMEL   73 (251)
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEEEEEEC
T ss_conf             7758988489999999998999999862049789999999999998589-----99888897-8--99579989999984


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
T Consensus        74 ~~~G~L~~--------------~l~~~~~~~--------~---~~~~---------~~i~~~ia~gl~yLH~-------~  112 (251)
T cd05041          74 VPGGSLLT--------------FLRKKKNRL--------T---VKKL---------LQMSLDAAAGMEYLES-------K  112 (251)
T ss_pred             CCCCCHHH--------------HHHHCCCCC--------C---HHHH---------HHHHHHHHHHHHHHHH-------C
T ss_conf             79996899--------------997357999--------9---9999---------9999999999998832-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       113 ~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  141 (251)
T cd05041         113 NCIHRDLAARNCLVGENNVLKISDFGMSR  141 (251)
T ss_pred             CCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             95278615400898899918981658860