HHsearch alignment for GI: 254780795 and conserved domain: cd05048

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=96.60  E-value=0.038  Score=33.51  Aligned_cols=155  Identities=14%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC--CC----C-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             6053100466812001799943--99----5-899982166998---899999999999853267755510010267787
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTS--KG----T-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~--~~----~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
T Consensus         6 ~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g--~~   77 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQH-----PNIVCLL-G--VC   77 (283)
T ss_pred             HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EE
T ss_conf             98983697158883899999837887606779999998832697899999999999985899-----8973188-9--99


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             5224515578647887076899899999999864367530687543323--11245645766752001552278899999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKN--TLSPLNLKFLWAKCFDKVDEDLKKEIDHE  170 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  170 (316)
T Consensus        78 ~~~~~~~lv~Ey~~~GsL~~-----------~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~i~~~ia~g  136 (283)
T cd05048          78 TKEQPTCMLFEYLAHGDLHE-----------FL-VRNSPHSDVGAESGDETVKSSLDCSDFL---------HIAIQIAAG  136 (283)
T ss_pred             EECCEEEEEEEECCCCCHHH-----------HH-HHCCCCCCCCCCCCCCCCCCCCCHHHHH---------HHHHHHHHH
T ss_conf             66886699999169990899-----------99-8618764211112333335779999999---------999999999


Q ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             9988876521077744402234642256279604873162135
Q gi|254780795|r  171 FCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       171 l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       137 l~yLH~-------~~IvHrDlK~~NILl~~~~~~Ki~DFGla~  172 (283)
T cd05048         137 MEYLSS-------HHFVHRDLAARNCLVGEGLTVKISDFGLSR  172 (283)
T ss_pred             HHHHHH-------CCCCCCCCCCCEEEECCCCCEEEEEECCCC
T ss_conf             999986-------890777556175898899938998604750