HHsearch alignment for GI: 254780795 and conserved domain: cd05049
>cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=96.62 E-value=0.031 Score=34.12 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=72.0
Q ss_pred EEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 10046681200179994------3995-8999821669988---999999999998532677555100102677875224
Q gi|254780795|r 27 VQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316)
T Consensus 10 ~~~iG~G~fG~Vy~g~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~~l~~l~Hp-----nIV~l~-g--~~~~~~ 81 (280)
T cd05049 10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHE-----NIVKFY-G--VCTEGD 81 (280)
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEE-E--EEEECC
T ss_conf 86991375869999998267548878899999989757868999999999999877998-----874078-8--997799
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316)
Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316)
T Consensus 82 ~~~lV~Ey~~~GsL~~----~l~~~~~-----~~~~~~~~~~~~~~l---~~~~~---------~~i~~qia~gl~yLH~ 140 (280)
T cd05049 82 PPIMVFEYMEHGDLNK----FLRSHGP-----DAAFLKSPDSPMGEL---TLSQL---------LQIAVQIASGMVYLAS 140 (280)
T ss_pred EEEEEEECCCCCCHHH----HHHHCCC-----CCCCCCCCCCCCCCC---CHHHH---------HHHHHHHHHHHHHHHH
T ss_conf 7799998069991999----9987097-----510012355557777---99999---------9999999999998866
Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 6521077744402234642256279604873162135
Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 141 -------~~ivHrDlK~~NiLl~~~~~~Kl~DFGls~ 170 (280)
T cd05049 141 -------QHFVHRDLATRNCLVGYDLVVKIGDFGMSR 170 (280)
T ss_pred -------CCEECCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf -------893426657401798789888963235543