HHsearch alignment for GI: 254780795 and conserved domain: cd05078

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=91.96  E-value=0.4  Score=26.89  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCEEECCCCCCCEEECCCC--------CEEEECCCCCC
Q ss_conf             7444022346422562796--------04873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNK--------IMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~--------i~giIDF~~~~  213 (316)
T Consensus       119 ~~iiHrDlK~~NiLl~~~~~~k~~~~~~~kl~DfG~s~  156 (258)
T cd05078         119 KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCE
T ss_conf             89877856766388846677443675541322788760