HHsearch alignment for GI: 254780795 and conserved domain: cd05079
>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=95.97 E-value=0.14 Score=29.90 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=70.6
Q ss_pred EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752
Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316)
Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316)
T Consensus 6 ~k~~~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hp-----NIv~~~-g~-~~~~ 78 (284)
T cd05079 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGEHIADLKKEIEILRNLYHE-----NIVKYK-GI-CTEE 78 (284)
T ss_pred CEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-EE-EECC
T ss_conf 8644596137083999858864427779399999984212867899999999999867998-----884086-57-8337
Q ss_pred CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 245-1557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r 95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316)
Q Consensus 95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316)
T Consensus 79 ~~~~~~lVmEy~~~GsL~~-----------~l---~~~~--------~~l~~~~---~~---------~~~~qia~gl~y 124 (284)
T cd05079 79 GGNGIKLIMEFLPSGSLKE-----------YL---PRNK--------NKINLKQ---LL---------KYAVQICKGMDY 124 (284)
T ss_pred CCCEEEEEEEECCCCCHHH-----------HH---HHCC--------CCCCHHH---HH---------HHHHHHHHHHHH
T ss_conf 9977999999389994899-----------98---6346--------8999999---99---------999999999998
Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 8876521077744402234642256279604873162135
Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 125 LH-------~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~ 157 (284)
T cd05079 125 LG-------SRQYVHRDLAARNVLVENERMVKIGDFGLTK 157 (284)
T ss_pred HH-------HCCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf 70-------3983647776223898799978997366654