HHsearch alignment for GI: 254780795 and conserved domain: cd05086
>cd05086 PTKc_Aatyk2 Catalytic Domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=95.79 E-value=0.16 Score=29.39 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf 74440223464225627960487316213
Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316)
Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316)
T Consensus 118 ~~ivHrDLK~~NiLl~~~~~~Ki~DFGla 146 (268)
T cd05086 118 HNFLHSDLALRNCFLTSDLTVKVGDYGIG 146 (268)
T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 89716777720189989997999877887