HHsearch alignment for GI: 254780795 and conserved domain: cd05583

>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=97.40  E-value=0.0026  Score=41.08  Aligned_cols=136  Identities=19%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
T Consensus         6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~~E~~~l~~l~~~----~~Iv~l~~---~~~~~~   78 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRC----PFLVTLHY---AFQTDT   78 (288)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf             79414888399999985537879589999980788412267899999999999970599----97779999---999899


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
T Consensus        79 ~~yivmE~~~gg~L~~--------------~l~~-~~~l~--------e~~~~------------~~~~qil~~l~ylH~  123 (288)
T cd05583          79 KLHLILDYVNGGELFT--------------HLYQ-REHFT--------ESEVR------------VYIAEIVLALDHLHQ  123 (288)
T ss_pred             EEEEEEECCCCCCHHH--------------HHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH
T ss_conf             9999997889988999--------------9987-59989--------99999------------999999999999998


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             652107774440223464225627-9604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
T Consensus       124 -------~~ivHRDiKp~NILi~~~~~ik-l~DFG~a~  153 (288)
T cd05583         124 -------LGIIYRDIKLENILLDSEGHVV-LTDFGLSK  153 (288)
T ss_pred             -------CCEEECCCCHHHCCCCCCCCEE-EEECCCCE
T ss_conf             -------8903166771324345889989-98867573