HHsearch alignment for GI: 254780795 and conserved domain: cd05583
>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=97.40 E-value=0.0026 Score=41.08 Aligned_cols=136 Identities=19% Similarity=0.272 Sum_probs=69.7
Q ss_pred EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316)
Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316)
T Consensus 6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~~E~~~l~~l~~~----~~Iv~l~~---~~~~~~ 78 (288)
T cd05583 6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRC----PFLVTLHY---AFQTDT 78 (288)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf 79414888399999985537879589999980788412267899999999999970599----97779999---999899
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316)
Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316)
T Consensus 79 ~~yivmE~~~gg~L~~--------------~l~~-~~~l~--------e~~~~------------~~~~qil~~l~ylH~ 123 (288)
T cd05583 79 KLHLILDYVNGGELFT--------------HLYQ-REHFT--------ESEVR------------VYIAEIVLALDHLHQ 123 (288)
T ss_pred EEEEEEECCCCCCHHH--------------HHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH
T ss_conf 9999997889988999--------------9987-59989--------99999------------999999999999998
Q ss_pred HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf 652107774440223464225627-9604873162135
Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316)
Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316)
T Consensus 124 -------~~ivHRDiKp~NILi~~~~~ik-l~DFG~a~ 153 (288)
T cd05583 124 -------LGIIYRDIKLENILLDSEGHVV-LTDFGLSK 153 (288)
T ss_pred -------CCEEECCCCHHHCCCCCCCCEE-EEECCCCE
T ss_conf -------8903166771324345889989-98867573