HHsearch alignment for GI: 254780795 and conserved domain: cd05589

>cd05589 STKc_PKN STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, ce
Probab=97.47  E-value=0.0036  Score=40.15  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=74.4

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--9988---999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
T Consensus         4 l~~lG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~--~HP~Iv~l~~---~f~~~~~~y   78 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSE--RHPFLVNLFA---CFQTEDHVC   78 (324)
T ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEE---EEEECCEEE
T ss_conf             99982273819999999999989999998578842747999999999999998647--9999894999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
T Consensus        79 lvmEy~~gGdL~--------------~~i~~--~~l~--------e~~~~------------~~~~qi~~aL~ylH~---  119 (324)
T cd05589          79 FVMEYAAGGDLM--------------MHIHT--DVFS--------EPRAV------------FYAACVVLGLQYLHE---  119 (324)
T ss_pred             EEEECCCCCCHH--------------HHHHC--CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999779998699--------------99743--8999--------99999------------999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             10777444022346422562796048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
T Consensus       120 ----~~IiHRDlKPeNILl~~~g~iKL~DFGlak~  150 (324)
T cd05589         120 ----NKIVYRDLKLDNLLLDTEGYVKIADFGLCKE  150 (324)
T ss_pred             ----CCEEEEECCCCCCCCCCCCCEEEEECCHHHH
T ss_conf             ----8988985365442136899889965111121