HHsearch alignment for GI: 254780795 and conserved domain: cd05613
>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=97.81 E-value=0.00026 Score=47.53 Aligned_cols=136 Identities=21% Similarity=0.296 Sum_probs=71.6
Q ss_pred EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316)
Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316)
T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~l~~~----p~Iv~l~~---~~~~~~ 78 (290)
T cd05613 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS----PFLVTLHY---AFQTDT 78 (290)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf 79513888399999985327889499999980788401067899999999999854899----96789999---999899
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316)
Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316)
T Consensus 79 ~~ylvmEy~~gg~L~~--------------~l~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~ 123 (290)
T cd05613 79 KLHLILDYINGGELFT--------------HLSQR-ERFK--------EQEV------------QIYSGEIVLALEHLHK 123 (290)
T ss_pred EEEEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH
T ss_conf 9999996779988899--------------99874-9999--------9999------------9999999999999998
Q ss_pred HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf 6521077744402234642256279-604873162135
Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316)
Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316)
T Consensus 124 -------~~IiHRDiKpeNILl~~~g~ik-l~DFGls~ 153 (290)
T cd05613 124 -------LGIIYRDIKLENILLDSNGHVV-LTDFGLSK 153 (290)
T ss_pred -------CCCEECCCCHHHCCCCCCCCEE-ECCCCCCE
T ss_conf -------8945323663654466899889-83276011