HHsearch alignment for GI: 254780795 and conserved domain: cd05613

>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=97.81  E-value=0.00026  Score=47.53  Aligned_cols=136  Identities=21%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~l~~~----p~Iv~l~~---~~~~~~   78 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS----PFLVTLHY---AFQTDT   78 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf             79513888399999985327889499999980788401067899999999999854899----96789999---999899


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
T Consensus        79 ~~ylvmEy~~gg~L~~--------------~l~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~  123 (290)
T cd05613          79 KLHLILDYINGGELFT--------------HLSQR-ERFK--------EQEV------------QIYSGEIVLALEHLHK  123 (290)
T ss_pred             EEEEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH
T ss_conf             9999996779988899--------------99874-9999--------9999------------9999999999999998


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             6521077744402234642256279-604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
T Consensus       124 -------~~IiHRDiKpeNILl~~~g~ik-l~DFGls~  153 (290)
T cd05613         124 -------LGIIYRDIKLENILLDSNGHVV-LTDFGLSK  153 (290)
T ss_pred             -------CCCEECCCCHHHCCCCCCCCEE-ECCCCCCE
T ss_conf             -------8945323663654466899889-83276011