HHsearch alignment for GI: 254780795 and conserved domain: cd05623
>cd05623 STKc_MRCK_alpha STKc_MRCK_alpha: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway.
Probab=97.25 E-value=0.01 Score=37.17 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=68.5
Q ss_pred EEECCCCCEEEEEEEEECC-CC-EEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 1004668120017999439-95-899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-GT-FILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~~-yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316)
T Consensus 6 ~~~IG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y 77 (332)
T cd05623 6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG-----DNQWITTLHY---AFQDENNLY 77 (332)
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHC-----CCCCEEEEEE---EEEECCEEE
T ss_conf 57862173709999999899979999998378924789999999999999858-----9997666999---999899999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316)
Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316)
T Consensus 78 lvmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~~~------------~~~~qi~~aL~ylH~--- 120 (332)
T cd05623 78 LVMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYLAEMVIAIDSVHQ--- 120 (332)
T ss_pred EEEEECCCCCHH-----------HHHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf 999944797389-----------9998606---8899--------99999------------999999999999998---
Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf 107774440223464225627-960487316213
Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316)
Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316)
T Consensus 121 ----~~IiHRDLKPeNILl~~~g~iK-L~DFG~a 149 (332)
T cd05623 121 ----LHYVHRDIKPDNILMDMNGHIR-LADFGSC 149 (332)
T ss_pred ----CCCEECCCCCCCCCCCCCCCEE-EECCHHH
T ss_conf ----7975311257660335899889-8300032