HHsearch alignment for GI: 254780795 and conserved domain: cd06605
>cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu
Probab=97.57 E-value=0.0061 Score=38.66 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=76.0
Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 5310046681200179994-3995-89998216699889---99999999998532677555100102677875224515
Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316)
Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316)
T Consensus 4 ~~i~~iG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~Ei~~l~~l-----~HpnIv~~~~---~~~~~~~~~ 75 (265)
T cd06605 4 ETLGELGAGNSGVVSKVRHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC-----NSPYIVGFYG---AFYNNGDIS 75 (265)
T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE
T ss_conf 89888111868099999998999899999984205989999999999999867-----9989890989---999899889
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316)
Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316)
T Consensus 76 ivmEy~~~g~L~~-----------~~~~~~---~~~~--------e~~~~------------~i~~qi~~~l~ylH~--- 118 (265)
T cd06605 76 ICMEYMDGGSLDK-----------ILKEVQ---GRIP--------ERILG------------KIAVAVLKGLTYLHE--- 118 (265)
T ss_pred EEEECCCCCCHHH-----------HHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf 9992689986999-----------998748---9999--------99999------------999999999999987---
Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 10777444022346422562796048731621356
Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 119 ---~~~iiHRDiKp~NILl~~~g~iKl~DFG~s~~ 150 (265)
T cd06605 119 ---KHKIIHRDVKPSNILVNSRGEIKLCDFGVSGQ 150 (265)
T ss_pred ---CCCEEEEEECCCCCCCCCCCCEEECCCCCCEE
T ss_conf ---09987321056552188999989843734224