HHsearch alignment for GI: 254780795 and conserved domain: cd06616

>cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif
Probab=97.53  E-value=0.0077  Score=38.00  Aligned_cols=147  Identities=19%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             6053100466812001799943-99-589998216699889---999999999985326775551001026778752245
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k   97 (316)
T Consensus         5 d~~~l~~lG~G~fg~V~~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~e~~~l~~----~~~hpnIv~~~~---~~~~~~~   77 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMR----SSDCPYIVKFYG---ALFREGD   77 (288)
T ss_pred             HCEECCEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCE
T ss_conf             988832861387859999998899969999998801491899999999999998----369998888988---9987891


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
T Consensus        78 ~~ivme~~~~~------------l~~~~~~~~~~~~~~-------~~e----~~~--------~~~~~qi~~al~ylH~-  125 (288)
T cd06616          78 CWICMELMDIS------------LDKFYKYVYEVLKSV-------IPE----EIL--------GKIAVATVKALNYLKE-  125 (288)
T ss_pred             EEEEEEECCCC------------HHHHHHHHHHHCCCC-------CCH----HHH--------HHHHHHHHHHHHHHHH-
T ss_conf             79999982898------------899999998731689-------999----999--------9999999999999987-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             521077744402234642256279-6048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
T Consensus       126 -----~~~IiHRDlKp~NILl~~~~~iK-l~DFGla~~  157 (288)
T cd06616         126 -----ELKIIHRDVKPSNILLDRNGNIK-LCDFGISGQ  157 (288)
T ss_pred             -----CCCEECCCCCHHHEEECCCCCEE-EEECCCCCC
T ss_conf             -----28984166760113288999789-996888543