HHsearch alignment for GI: 254780795 and conserved domain: cd06654

>cd06654 STKc_PAK1 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulati
Probab=98.11  E-value=0.00023  Score=47.90  Aligned_cols=154  Identities=16%  Similarity=0.249  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHC-CCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999848-99860----5310046681200179994-399-5899982166--99889999999999985326775
Q gi|254780795|r    9 QKEIQSFVQEY-AIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPC   79 (316)
Q Consensus         9 ~~el~~il~~y-~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipv   79 (316)
T Consensus         2 ~~~~~~~~~~~~~~gdp~~~Y~~~~~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----   76 (296)
T cd06654           2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN-----   76 (296)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCC-----
T ss_conf             589999998434999977041888897038683999999889998999999843227538999999999987799-----


Q ss_pred             CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             55100102677875224515578647887076899899999999864367530687543323112456457667520015
Q gi|254780795|r   80 PIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKV  159 (316)
Q Consensus        80 P~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~  159 (316)
T Consensus        77 pnIv~l~~---~~~~~~~~~ivmE~~~gg~L~~-----------~l~~-----~~l~--------e~~~-----------  118 (296)
T cd06654          77 PNIVNYLD---SYLVGDELWVVMEYLAGGSLTD-----------VVTE-----TCMD--------EGQI-----------  118 (296)
T ss_pred             CCCCEEEE---EEEECCEEEEEEECCCCCCHHH-----------HHHH-----CCCC--------HHHH-----------
T ss_conf             99890999---9998999999996289994799-----------9871-----6999--------9999-----------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             522788999999988876521077744402234642256279-6048731621356
Q gi|254780795|r  160 DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       160 ~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
T Consensus       119 -~~i~~qil~aL~ylH~-------~~IiHRDiKp~NILl~~~g~vK-l~DFGla~~  165 (296)
T cd06654         119 -AAVCRECLQALEFLHS-------NQVIHRDIKSDNILLGMDGSVK-LTDFGFCAQ  165 (296)
T ss_pred             -HHHHHHHHHHHHHHHH-------CCCEECCCCCHHEEECCCCCEE-EEECCCCEE
T ss_conf             -9999999999999987-------8965021780545898999999-995788856