HHsearch alignment for GI: 254780795 and conserved domain: cd06657

>cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a
Probab=97.95  E-value=0.00036  Score=46.61  Aligned_cols=137  Identities=15%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             EEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             310046681200179994-3995-899982166--998899999999999853267755510010267787522451557
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
T Consensus        24 ~~~kIG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~ylv   95 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-----VVEMYN---SYLVGDELWVV   95 (292)
T ss_pred             CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCEEE---EEEECCEEEEE
T ss_conf             2869622888199999988999899999983056403899999999998679989-----982989---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
T Consensus        96 mEy~~gG~L~~-----------~~~--~---~~l~--------e~~i~------------~i~~qil~aL~yLH~-----  134 (292)
T cd06657          96 MEFLEGGALTD-----------IVT--H---TRMN--------EEQIA------------AVCLAVLKALSVLHA-----  134 (292)
T ss_pred             EECCCCCCHHH-----------HHH--H---CCCC--------HHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             96769787999-----------998--1---8999--------99999------------999999999999997-----


Q ss_pred             CCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             77744402234642256279-6048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
T Consensus       135 --~~IiHRDiKpeNILl~~~g~iK-L~DFGla~~  165 (292)
T cd06657         135 --QGVIHRDIKSDSILLTHDGRVK-LSDFGFCAQ  165 (292)
T ss_pred             --CCCEEEECCCHHEEECCCCCEE-EEEEEEEEE
T ss_conf             --8945322671306785899889-996021366