HHsearch alignment for GI: 254780795 and conserved domain: cd06657
>cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a
Probab=97.95 E-value=0.00036 Score=46.61 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=76.4
Q ss_pred EEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 310046681200179994-3995-899982166--998899999999999853267755510010267787522451557
Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316)
Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316)
T Consensus 24 ~~~kIG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~ylv 95 (292)
T cd06657 24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-----VVEMYN---SYLVGDELWVV 95 (292)
T ss_pred CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCEEE---EEEECCEEEEE
T ss_conf 2869622888199999988999899999983056403899999999998679989-----982989---99989999999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316)
Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316)
T Consensus 96 mEy~~gG~L~~-----------~~~--~---~~l~--------e~~i~------------~i~~qil~aL~yLH~----- 134 (292)
T cd06657 96 MEFLEGGALTD-----------IVT--H---TRMN--------EEQIA------------AVCLAVLKALSVLHA----- 134 (292)
T ss_pred EECCCCCCHHH-----------HHH--H---CCCC--------HHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf 96769787999-----------998--1---8999--------99999------------999999999999997-----
Q ss_pred CCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf 77744402234642256279-6048731621356
Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316)
Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316)
T Consensus 135 --~~IiHRDiKpeNILl~~~g~iK-L~DFGla~~ 165 (292)
T cd06657 135 --QGVIHRDIKSDSILLTHDGRVK-LSDFGFCAQ 165 (292)
T ss_pred --CCCEEEECCCHHEEECCCCCEE-EEEEEEEEE
T ss_conf --8945322671306785899889-996021366