HHsearch alignment for GI: 254780795 and conserved domain: cd06658
>cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is
Probab=97.98 E-value=0.00037 Score=46.54 Aligned_cols=155 Identities=16% Similarity=0.258 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHH-CCCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999999984-899860----5310046681200179994-399-5899982166--998899999999999853267
Q gi|254780795|r 7 PPQKEIQSFVQE-YAIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKL 77 (316)
Q Consensus 7 ls~~el~~il~~-y~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gi 77 (316)
T Consensus 2 ~~~~~~~~~~~~~~~~gd~~~~~~~l~~IG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H--- 78 (292)
T cd06658 2 VSHEQFRAALQLVVSPGDPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHH--- 78 (292)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC---
T ss_conf 87799999998354999948967407796227781999999899998999999851663239999999999986799---
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 75551001026778752245155786478870768998999999998643675306875433231124564576675200
Q gi|254780795|r 78 PCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD 157 (316)
Q Consensus 78 pvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~ 157 (316)
T Consensus 79 --pnIV~l~~---~~~~~~~~yiVmE~~~gG~L~~--------~---i~--~---~~l~--------e~~~--------- 120 (292)
T cd06658 79 --ENVVDMYN---SYLVGDELWVVMEFLEGGALTD--------I---VT--H---TRMN--------EEQI--------- 120 (292)
T ss_pred --CCCCEEEE---EEEECCEEEEEEECCCCCCHHH--------H---HH--C---CCCC--------HHHH---------
T ss_conf --89891999---9998999999998989991778--------9---87--2---8999--------9999---------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf 1552278899999998887652107774440223464225627-9604873162135
Q gi|254780795|r 158 KVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316)
Q Consensus 158 ~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316)
T Consensus 121 ---~~i~~qil~aL~yLH~-------~~IiHRDlKpeNILl~~~g~iK-L~DFGla~ 166 (292)
T cd06658 121 ---ATVCLSVLRALSYLHN-------QGVIHRDIKSDSILLTSDGRIK-LSDFGFCA 166 (292)
T ss_pred ---HHHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCEE-EEECCCCE
T ss_conf ---9999999999999997-------8935363771536786899899-97262755