HHsearch alignment for GI: 254780795 and conserved domain: cd07839
>cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio
Probab=97.83 E-value=0.00084 Score=44.22 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=73.3
Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 10046681200179994-3995-899982166998----89999999999985326775551001026778752245155
Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316)
T Consensus 5 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~i 76 (284)
T cd07839 5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-----KNIVRLYD---VLHSDKKLTL 76 (284)
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EECCCCEEEE
T ss_conf 048204728399999988999799999983034646779999999999986799-----99720211---2500997999
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316)
Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316)
T Consensus 77 vmE~~~~~l------~~------~~~~~----~~-------~~~~~~~~------------~~~~qil~gl~ylH~---- 117 (284)
T cd07839 77 VFEYCDQDL------KK------YFDSC----NG-------DIDPEIVK------------SFMFQLLKGLAFCHS---- 117 (284)
T ss_pred EEECCCCCH------HH------HHHHH----CC-------CCCHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf 996079778------99------99972----79-------99999999------------999999999999986----
Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 077744402234642256279604873162135
Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 118 ---~~IiHRDiKpeNILl~~~~~vKL~DFGla~ 147 (284)
T cd07839 118 ---HNVLHRDLKPQNLLINKNGELKLADFGLAR 147 (284)
T ss_pred ---CCCCCCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf ---985712177302688899999995517663