HHsearch alignment for GI: 254780795 and conserved domain: cd07850
>cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different
Probab=97.32 E-value=0.0059 Score=38.75 Aligned_cols=143 Identities=15% Similarity=0.261 Sum_probs=71.9
Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCH-
Q ss_conf 99848998605310046681200179994-399-58999821669-9---88999999999998532677555100102-
Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM-N---EKDLPVFIELLHYISRNKLPCPIPIPRND- 87 (316)
Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~- 87 (316)
T Consensus 14 v~~rY~i-----~~~lG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~HpnI-----v~l~~~ 83 (353)
T cd07850 14 VLKRYQN-----LKPIGSGAQGIVCAAYDTVTKQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI-----IGLLNA 83 (353)
T ss_pred CCCCCEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CCEEEE
T ss_conf 3026288-----369731408499999988999899999988345382889999999999986799699-----938889
Q ss_pred ---HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf ---67787522451557864788707689989999999986436753068754332311245645766752001552278
Q gi|254780795|r 88 ---GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK 164 (316)
Q Consensus 88 ---G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (316)
T Consensus 84 f~~~~~~~-~~~~~yivmE~~~~~L--------~-~---~~---~---~~l~--------~~~~~------------~i~ 124 (353)
T cd07850 84 FTPQKSLE-EFQDVYLVMELMDANL--------C-Q---VI---Q---MDLD--------HERMS------------YLL 124 (353)
T ss_pred EECCCCCC-CCCEEEEEEECCCCCH--------H-H---HH---H---CCCC--------HHHHH------------HHH
T ss_conf 84066433-2763899994179989--------9-9---98---6---0399--------99999------------999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 8999999988876521077744402234642256279604873162135
Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 125 ~Qil~aL~ylH~-------~gIiHRDLKPeNILl~~~~~vKL~DFGlA~ 166 (353)
T cd07850 125 YQMLCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 166 (353)
T ss_pred HHHHHHHHHHHH-------CCCEECCCCHHHEEECCCCCEEECCCCHHE
T ss_conf 999999999987-------893556687577799899978622312200