HHsearch alignment for GI: 254780795 and conserved domain: cd07850

>cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different
Probab=97.32  E-value=0.0059  Score=38.75  Aligned_cols=143  Identities=15%  Similarity=0.261  Sum_probs=71.9

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCH-
Q ss_conf             99848998605310046681200179994-399-58999821669-9---88999999999998532677555100102-
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM-N---EKDLPVFIELLHYISRNKLPCPIPIPRND-   87 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~-   87 (316)
T Consensus        14 v~~rY~i-----~~~lG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~HpnI-----v~l~~~   83 (353)
T cd07850          14 VLKRYQN-----LKPIGSGAQGIVCAAYDTVTKQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI-----IGLLNA   83 (353)
T ss_pred             CCCCCEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CCEEEE
T ss_conf             3026288-----369731408499999988999899999988345382889999999999986799699-----938889


Q ss_pred             ---HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             ---67787522451557864788707689989999999986436753068754332311245645766752001552278
Q gi|254780795|r   88 ---GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK  164 (316)
Q Consensus        88 ---G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (316)
T Consensus        84 f~~~~~~~-~~~~~yivmE~~~~~L--------~-~---~~---~---~~l~--------~~~~~------------~i~  124 (353)
T cd07850          84 FTPQKSLE-EFQDVYLVMELMDANL--------C-Q---VI---Q---MDLD--------HERMS------------YLL  124 (353)
T ss_pred             EECCCCCC-CCCEEEEEEECCCCCH--------H-H---HH---H---CCCC--------HHHHH------------HHH
T ss_conf             84066433-2763899994179989--------9-9---98---6---0399--------99999------------999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8999999988876521077744402234642256279604873162135
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       125 ~Qil~aL~ylH~-------~gIiHRDLKPeNILl~~~~~vKL~DFGlA~  166 (353)
T cd07850         125 YQMLCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR  166 (353)
T ss_pred             HHHHHHHHHHHH-------CCCEECCCCHHHEEECCCCCEEECCCCHHE
T ss_conf             999999999987-------893556687577799899978622312200