HHsearch alignment for GI: 254780795 and conserved domain: cd07874
>cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s
Probab=97.69 E-value=0.00048 Score=45.82 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCCCCCCCCC-CH
Q ss_conf 99848998605310046681200179994-399-5899982166-998---89999999999985326775551001-02
Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLPCPIPIPR-ND 87 (316)
Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gipvP~pi~~-~~ 87 (316)
T Consensus 15 v~~RY~i-----~~~LG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~hpnIV--~~~~~f~~ 87 (355)
T cd07874 15 VLKRYQN-----LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNII--SLLNVFTP 87 (355)
T ss_pred HHHCEEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCC--EEEEEEEC
T ss_conf 2016188-----1695216184999999889998999999892454979999999999999867996989--19899841
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 67787522451557864788707689989999999986436753068754332311245645766752001552278899
Q gi|254780795|r 88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI 167 (316)
Q Consensus 88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (316)
T Consensus 88 ~~~~~~-~~~~yivmE~~~~~l~--------~~~-~---------~~l~--------~~~i~------------~i~~qi 128 (355)
T cd07874 88 QKSLEE-FQDVYLVMELMDANLC--------QVI-Q---------MELD--------HERMS------------YLLYQM 128 (355)
T ss_pred CCCCCC-CCCEEEEEEECCCCHH--------HHH-H---------HCCC--------HHHHH------------HHHHHH
T ss_conf 774211-5617999970599889--------998-7---------3499--------99999------------999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 9999988876521077744402234642256279604873162135
Q gi|254780795|r 168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 129 l~gL~ylH~-------~gIiHRDLKPeNILl~~~~~vKl~DFGlA~ 167 (355)
T cd07874 129 LCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167 (355)
T ss_pred HHHHHHHHH-------CCCEECCCCHHHEEECCCCCEECCCCCCCC
T ss_conf 999999987-------982532487788678689974014544022