HHsearch alignment for GI: 254780795 and conserved domain: cd07877
>cd07877 STKc_p38alpha_MAPK14 The catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase subfamily. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also
Probab=96.88 E-value=0.016 Score=35.90 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=68.3
Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCC
Q ss_conf 5310046681200179994-3995-8999821669----9889999999999985326775551001-026778752245
Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRM----NEKDLPVFIELLHYISRNKLPCPIPIPR-NDGKLYGFLCKK 97 (316)
Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~----~~~~l~~~~~ll~~L~~~gipvP~pi~~-~~G~~~~~~~~k 97 (316)
T Consensus 20 ~i~~~IG~G~fG~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~iL~~l~HpnIv--~l~d~f~~~~~~~~-~~~ 96 (345)
T cd07877 20 QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVI--GLLDVFTPARSLEE-FND 96 (345)
T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCC-CCC
T ss_conf 880297327084999999889998999999883000558899999999999866799933--26778831664344-770
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316)
Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316)
T Consensus 97 -~~iv~~~~g~~L~--------~-------~~~~-~~l~--------e~~i~------------~i~~Qil~aL~ylH~- 138 (345)
T cd07877 97 -VYLVTHLMGADLN--------N-------IVKC-QKLT--------DDHVQ------------FLIYQILRGLKYIHS- 138 (345)
T ss_pred -EEEEEECCCCCHH--------H-------HHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-
T ss_conf -8999927998899--------9-------9862-8999--------99999------------999999999999998-
Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 5210777444022346422562796048731621356
Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 139 ------~gIiHRDIKPeNILl~~~~~vKL~DFGlAr~ 169 (345)
T cd07877 139 ------ADIIHRDLKPSNLAVNEDCELKILDFGLARH 169 (345)
T ss_pred ------CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf ------8845455774552456778779996367754