HHsearch alignment for GI: 254780795 and conserved domain: pfam06176
>pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system.
Probab=98.54 E-value=2.1e-06 Score=61.02 Aligned_cols=163 Identities=14% Similarity=0.274 Sum_probs=89.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHH--HH------HHHHHHHH--
Q ss_conf 657708999999999848998605310046681200179994399589998216699889--99------99999999--
Q gi|254780795|r 2 AVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKD--LP------VFIELLHY-- 71 (316)
Q Consensus 2 aVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~--l~------~~~~ll~~-- 71 (316)
T Consensus 11 ~vy~ke~~~~y~~l~~~~l~~~~k~~kv~~~~~~~~V~lIe~~~~kyIlK~~~~~~~~~eR~~~s~ikg~~y~~li~~~~ 90 (229)
T pfam06176 11 SVFYKDNDNKYKEIFNDFLSYNFKTIKVFRNIDDTKVSLIDTDYGKYVLKVFAPKVKRNERFLKSLVKGDYYENLIVQTD 90 (229)
T ss_pred EEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 79965865039999999972650366742278752699999759558996675211128999999861489999999999
Q ss_pred -HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf -8532677555100102677875224515578647887076899899999999864367530687543323112456457
Q gi|254780795|r 72 -ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF 150 (316)
Q Consensus 72 -L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~ 150 (316)
T Consensus 91 ~~~~eG~~~~nd~yl~aekk~~r~~~~~i~l~EYIEG~~l~~~~------------------------------------ 134 (229)
T pfam06176 91 RVRSEGLTSLNDFYLLAERKTLNYAHTYIMLIEYIEGVELNDMP------------------------------------ 134 (229)
T ss_pred HHHHCCCCCCCCEEEEEEHHHCCEEEEEEEEEEEECCCCCCCCC------------------------------------
T ss_conf 88761330003200131214256014566665322573246644------------------------------------
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHH
Q ss_conf 6675200155227889999999888765210777444022346422562796048731621356800
Q gi|254780795|r 151 LWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL 217 (316)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~ 217 (316)
T Consensus 135 -------dI~e~~~~~Ik~~I~~LH~-------~g~~sgD~h~gNFI~s~~~ir-IIDl--sgK~~~ 184 (229)
T pfam06176 135 -------EISEDVKAKIKQSIESLHQ-------HGMVSGDPHRGNFIVSKDGVR-IIDL--SGKRCT 184 (229)
T ss_pred -------CCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCHH
T ss_conf -------4566679999999999997-------166358998765475089779-9988--885167