HHsearch alignment for GI: 254780795 and conserved domain: smart00090
>smart00090 RIO RIO-like kinase.
Probab=98.77 E-value=1.9e-07 Score=67.86 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEE-ECCCCCEEEEEEEE--ECCC-CEEEEEECC----------------C-----C
Q ss_conf 57708999999999848998605310-04668120017999--4399-589998216----------------6-----9
Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQ-PIIHGVENSNFVIQ--TSKG-TFILTIYEK----------------R-----M 57 (316)
Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~-~i~~G~~Ntny~v~--t~~~-~yiLri~e~----------------~-----~ 57 (316)
T Consensus 11 v~d~~t~laL~~L~~rg---~i~~l~~~I~~GKEa~Vy~a~~~~~~g~~vavKi~r~~~~~Fk~~~~y~~gd~Rf~~~~~ 87 (237)
T smart00090 11 VLDGRTRLALYSLLNRG---ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKI 87 (237)
T ss_pred HCCHHHHHHHHHHHHCC---CCHHHCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 35886899999999779---765539754024170379998447999889999977475230537663365410256888
Q ss_pred CHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 988-----999999999998532677555100102677875224515578647887076899899999999864367530
Q gi|254780795|r 58 NEK-----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT 132 (316)
Q Consensus 58 ~~~-----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~ 132 (316)
T Consensus 88 ~~~~~~~~wA~kEf~nL~rl~~aGv~VP~Pi~~~----------~nvlvMefIg~~~~pap~L~---------------- 141 (237)
T smart00090 88 NPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAWR----------RNVLVMEFIGGDGLPAPRLK---------------- 141 (237)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCCCCHH----------------
T ss_conf 9889999999999999999998599999848964----------89899997468897454321----------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCEEECCCCCEEEECCCC
Q ss_conf 68754332311245645766752001552278899999998887652107774-44022346422562796048731621
Q gi|254780795|r 133 KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG-IIHADLFPDNVLFYNNKIMGLIDFYF 211 (316)
Q Consensus 133 ~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g-~IHgDl~~~NiL~~~~~i~giIDF~~ 211 (316)
T Consensus 142 -d~~~------~~---------------~~~~~~~~~il~~~~~~y----~~g~lVHgDLSEyNIL~~~~~~~-iID~~Q 194 (237)
T smart00090 142 -DVEP------EE---------------EEEFELYDDILEEMRKLY----KEGELVHGDLSEYNILVHDGKVV-IIDVSQ 194 (237)
T ss_pred -CCCC------CH---------------HHHHHHHHHHHHHHHHHH----HHCCEEECCHHHHHHEEECCCEE-EEECCC
T ss_conf -1688------85---------------779999999999999999----82795203604655142089679-994675
Q ss_pred CCC
Q ss_conf 356
Q gi|254780795|r 212 SCN 214 (316)
Q Consensus 212 ~~~ 214 (316)
T Consensus 195 aV~ 197 (237)
T smart00090 195 SVE 197 (237)
T ss_pred CCC
T ss_conf 236