HHsearch alignment for GI: 254780796 and conserved domain: PRK06548
>PRK06548 ribonuclease H; Provisional.
Probab=100.00 E-value=0 Score=316.29 Aligned_cols=143 Identities=31% Similarity=0.564 Sum_probs=130.1
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEECCHHHCCCCCCC
Q ss_conf 88899996647579998218999996188127860222766302789999998641134540-37884064550325652
Q gi|254780796|r 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC-KVLLYTDSSYVHKGFSQ 84 (152)
Q Consensus 6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~-~i~I~tDS~yvv~~i~~ 84 (152)
T Consensus 3 ~~~iiiyTDGsc~gNPGpGGwg~~~~~~---~~~~gg~~~tTNNrmEL~Avi~al~~~~~~~~~v~I~TDS~Yvi~~it~ 79 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDEN---TWDSGGWDIATNNIAELTAVRELLIATRHTDRPILILSDSKYVINSLTK 79 (161)
T ss_pred CCCEEEEECCCCCCCCCCCEEEEEECCC---CEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
T ss_conf 8839999585889999860479996787---5475889887799999999999999853589858999647999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2567765432003556421100023454102221055898017888845589999999999988731
Q gi|254780796|r 85 WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151 (152)
Q Consensus 85 ~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k~~ 151 (152)
T Consensus 80 W~~~Wk~~gWk~s~g~pV~N~dLw~~ld~l~~~~~V~~~wVKGHsG~~~NE~aD~LA~~aA~~~~~~ 146 (161)
T PRK06548 80 WVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTR 146 (161)
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999987479858899066899999999986369658999688889920689999999999973516