HHsearch alignment for GI: 254780796 and conserved domain: PRK06548

>PRK06548 ribonuclease H; Provisional.
Probab=100.00  E-value=0  Score=316.29  Aligned_cols=143  Identities=31%  Similarity=0.564  Sum_probs=130.1

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEECCHHHCCCCCCC
Q ss_conf             88899996647579998218999996188127860222766302789999998641134540-37884064550325652
Q gi|254780796|r    6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC-KVLLYTDSSYVHKGFSQ   84 (152)
Q Consensus         6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~-~i~I~tDS~yvv~~i~~   84 (152)
T Consensus         3 ~~~iiiyTDGsc~gNPGpGGwg~~~~~~---~~~~gg~~~tTNNrmEL~Avi~al~~~~~~~~~v~I~TDS~Yvi~~it~   79 (161)
T PRK06548          3 NNEIIAATDGSSLANPGPSGWAWYVDEN---TWDSGGWDIATNNIAELTAVRELLIATRHTDRPILILSDSKYVINSLTK   79 (161)
T ss_pred             CCCEEEEECCCCCCCCCCCEEEEEECCC---CEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
T ss_conf             8839999585889999860479996787---5475889887799999999999999853589858999647999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             2567765432003556421100023454102221055898017888845589999999999988731
Q gi|254780796|r   85 WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK  151 (152)
Q Consensus        85 ~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k~~  151 (152)
T Consensus        80 W~~~Wk~~gWk~s~g~pV~N~dLw~~ld~l~~~~~V~~~wVKGHsG~~~NE~aD~LA~~aA~~~~~~  146 (161)
T PRK06548         80 WVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTR  146 (161)
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999987479858899066899999999986369658999688889920689999999999973516