HHsearch alignment for GI: 254780796 and conserved domain: PRK08719

>PRK08719 ribonuclease H; Reviewed.
Probab=100.00  E-value=0  Score=295.91  Aligned_cols=138  Identities=35%  Similarity=0.599  Sum_probs=123.2

Q ss_pred             CEEEEEECCCCCCCCC---CCEEEEEEECCCCEEE--E-ECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf             8899996647579998---2189999961881278--6-02227663027899999986411345403788406455032
Q gi|254780796|r    7 REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKI--I-SGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK   80 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~---~aG~g~v~~~~~~~~~--~-~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~   80 (152)
T Consensus         3 ~~~~IYTDGac~~N~~~~a~gG~Gv~~~~~~~~~~~~~~~~~~~~tTNnraEL~Avi~AL~~~~~~~--~I~TDS~Y~i~   80 (147)
T PRK08719          3 APYSIYIDGAAPNNQHGCVQGGIGLVVYDAAGELVDEQSLSVNRYTDNAELELLALIEALEYARDGD--VIYSDSDYCVR   80 (147)
T ss_pred             CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC--EEEECHHHHHH
T ss_conf             9669981179899958799968999999579965655413788886399999999999999569999--79975599997


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             565225677654320035564211000234541022210558980178888455899999999999
Q gi|254780796|r   81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV  146 (152)
Q Consensus        81 ~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~  146 (152)
T Consensus        81 ~~t~W~~~W~~ngWk~s~g~~V~N~dL~~~l~~l~~~~~v~~~~VkgHsg~~gNe~aD~LA~~aAk  146 (147)
T PRK08719         81 GFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHSGIEGNEAADMLAQAAAK  146 (147)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             899999999984898188996659999999999837797799996788999122999999999846