HHsearch alignment for GI: 254780796 and conserved domain: PRK08719
>PRK08719 ribonuclease H; Reviewed.
Probab=100.00 E-value=0 Score=295.91 Aligned_cols=138 Identities=35% Similarity=0.599 Sum_probs=123.2
Q ss_pred CEEEEEECCCCCCCCC---CCEEEEEEECCCCEEE--E-ECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 8899996647579998---2189999961881278--6-02227663027899999986411345403788406455032
Q gi|254780796|r 7 REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKI--I-SGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 7 ~~i~IytDGS~~~n~~---~aG~g~v~~~~~~~~~--~-~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
T Consensus 3 ~~~~IYTDGac~~N~~~~a~gG~Gv~~~~~~~~~~~~~~~~~~~~tTNnraEL~Avi~AL~~~~~~~--~I~TDS~Y~i~ 80 (147)
T PRK08719 3 APYSIYIDGAAPNNQHGCVQGGIGLVVYDAAGELVDEQSLSVNRYTDNAELELLALIEALEYARDGD--VIYSDSDYCVR 80 (147)
T ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC--EEEECHHHHHH
T ss_conf 9669981179899958799968999999579965655413788886399999999999999569999--79975599997
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 565225677654320035564211000234541022210558980178888455899999999999
Q gi|254780796|r 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146 (152)
Q Consensus 81 ~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~ 146 (152)
T Consensus 81 ~~t~W~~~W~~ngWk~s~g~~V~N~dL~~~l~~l~~~~~v~~~~VkgHsg~~gNe~aD~LA~~aAk 146 (147)
T PRK08719 81 GFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHSGIEGNEAADMLAQAAAK 146 (147)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 899999999984898188996659999999999837797799996788999122999999999846