HHsearch alignment of GI: 254780796 and MMDB domain: 1jl1_A_
>1jl1_A (A:) Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli}
Probab=100.00 E-value=1e-36 Score=226.31 Aligned_cols=142 Identities=56% Similarity=1.002 Sum_probs=135.9
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCH
Q ss_conf 88899996647579998218999996188127860222766302789999998641134540378840645503256522
Q gi|254780796|r 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQW 85 (152)
Q Consensus 6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~ 85 (152)
|..++|||||||++||+++|+|+++..++...........+|||+|||.|++.||+++.....++|+|||+|++++++.|
T Consensus 2 ~~~~~iy~DGS~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~~~~~~~i~i~tDS~~vi~~~~~~ 81 (155)
T 1jl1_A 2 LKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQW 81 (155)
T ss_dssp -CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHH
T ss_conf 96599996247889998579999999699579997145887639999997777898530465358970338765054007
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 56776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r 86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 86 ~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
...|..++|+++.++++.+.++++.+..+....++.|.||++|+++++|+.||+|||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~H~~~~~N~~AD~LAk~a~~~ 143 (155)
T 1jl1_A 82 IHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp HHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 68888767840144522139999998754014516999826869981379999999999728