HHsearch alignment of GI: 254780796 and MMDB domain: 1mu2_A_427-555
>1mu2_A (A:427-555) HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2}
Probab=99.96 E-value=6e-30 Score=188.24 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=99.1
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
+.+..++|||||||.+|++.+|+++++..... .......+|||.|||.|++.||++. ..++.|+|||+||+++++
T Consensus 6 p~~~~i~iytDGS~~~~~~~~g~~~~~~~~~~---~~~~~~~~t~~~AEl~a~~~al~~~--~~~i~i~tDS~~v~~~~~ 80 (129)
T 1mu2_A 6 PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKD---KVKKLEQTTNQQAELEAFAMALTDS--GPKVNIIVDSQYVMGIVA 80 (129)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCE---EEEEESSCCHHHHHHHHHHHHHHTS--CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEECCCCE---EEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHHHH
T ss_conf 98997289967634679987669999558845---5760899859999999999999958--996699855699988997
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 22567765432003556421100023454102221055898017888845589999999999
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa 145 (152)
.+...|..+.|+ ..+..+....+|+|.|||||+|++||++||+|||+|.
T Consensus 81 ~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~wv~gH~g~~gNe~AD~LAk~ai 129 (129)
T 1mu2_A 81 SQPTESESKIVN-------------QIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 129 (129)
T ss_dssp TCCSEESCHHHH-------------HHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HCCCCCCCHHHH-------------HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 299776558899-------------9999985789769999588899914799999997109