HHsearch alignment of GI: 254780796 and MMDB domain: 1mu2_A_427-555

>1mu2_A (A:427-555) HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2}
Probab=99.96  E-value=6e-30  Score=188.24  Aligned_cols=124  Identities=23%  Similarity=0.234  Sum_probs=99.1

Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf             77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r    4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS   83 (152)
Q Consensus         4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~   83 (152)
                      +.+..++|||||||.+|++.+|+++++.....   .......+|||.|||.|++.||++.  ..++.|+|||+||+++++
T Consensus         6 p~~~~i~iytDGS~~~~~~~~g~~~~~~~~~~---~~~~~~~~t~~~AEl~a~~~al~~~--~~~i~i~tDS~~v~~~~~   80 (129)
T 1mu2_A            6 PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKD---KVKKLEQTTNQQAELEAFAMALTDS--GPKVNIIVDSQYVMGIVA   80 (129)
T ss_dssp             CCTTCEEEEEEEEECTTTCCEEEEEEETTSCE---EEEEESSCCHHHHHHHHHHHHHHTS--CSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCCCCCEEEEEECCCCE---EEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHHHH
T ss_conf             98997289967634679987669999558845---5760899859999999999999958--996699855699988997


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             22567765432003556421100023454102221055898017888845589999999999
Q gi|254780796|r   84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA  145 (152)
Q Consensus        84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa  145 (152)
                      .+...|..+.|+             ..+..+....+|+|.|||||+|++||++||+|||+|.
T Consensus        81 ~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~wv~gH~g~~gNe~AD~LAk~ai  129 (129)
T 1mu2_A           81 SQPTESESKIVN-------------QIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  129 (129)
T ss_dssp             TCCSEESCHHHH-------------HHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             HCCCCCCCHHHH-------------HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf             299776558899-------------9999985789769999588899914799999997109