HHsearch alignment of GI: 254780796 and MMDB domain: 1ril_A_

>1ril_A (A:) Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus}
Probab=100.00  E-value=1.3e-34  Score=214.54  Aligned_cols=148  Identities=51%  Similarity=0.802  Sum_probs=125.7

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf             97777888999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r    1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK   80 (152)
Q Consensus         1 ~~~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~   80 (152)
                      |++.+...++|||||||.+||+++|||+|+...+............|||+|||.|++.||+++.....+.|+|||+||++
T Consensus         1 ~~p~~~~~~~iytDGs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~tn~~aEl~Ai~~al~~~~~~~~~~i~~Ds~~v~~   80 (166)
T 1ril_A            1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKK   80 (166)
T ss_dssp             -----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             99887885899976788899996389999997991389851115540789999999999876137764676314355532


Q ss_pred             CCCCHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             565225677654320-03556421100023454102221055898017888845589999999999988
Q gi|254780796|r   81 GFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF  148 (152)
Q Consensus        81 ~i~~~~~~W~~n~wk-~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~  148 (152)
                      +|+.+...|..+.|. ++.+.++.+..++..+..+.+..+|.|.|||||+|++||+.||+||++|+...
T Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~wv~~H~~~~gNe~AD~LA~~a~~~~  149 (166)
T 1ril_A           81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ  149 (166)
T ss_dssp             HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred             HHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             221124125554432343344321057899999997504431799056489766999999999999844