HHsearch alignment of GI: 254780796 and MMDB domain: 1ril_A_
>1ril_A (A:) Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-34 Score=214.54 Aligned_cols=148 Identities=51% Similarity=0.802 Sum_probs=125.7
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 97777888999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 1 ~~~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
|++.+...++|||||||.+||+++|||+|+...+............|||+|||.|++.||+++.....+.|+|||+||++
T Consensus 1 ~~p~~~~~~~iytDGs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~tn~~aEl~Ai~~al~~~~~~~~~~i~~Ds~~v~~ 80 (166)
T 1ril_A 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKK 80 (166)
T ss_dssp -----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 99887885899976788899996389999997991389851115540789999999999876137764676314355532
Q ss_pred CCCCHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 565225677654320-03556421100023454102221055898017888845589999999999988
Q gi|254780796|r 81 GFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148 (152)
Q Consensus 81 ~i~~~~~~W~~n~wk-~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~ 148 (152)
+|+.+...|..+.|. ++.+.++.+..++..+..+.+..+|.|.|||||+|++||+.||+||++|+...
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~wv~~H~~~~gNe~AD~LA~~a~~~~ 149 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 221124125554432343344321057899999997504431799056489766999999999999844