HHsearch alignment of GI: 254780796 and MMDB domain: 1zbf_A_
>1zbf_A (A:) Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans c-125}
Probab=99.97 E-value=2.3e-33 Score=207.50 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=119.8
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCC
Q ss_conf 77788899996647579998218999996188127860222766302789999998641134-54037884064550325
Q gi|254780796|r 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK-YPCKVLLYTDSSYVHKG 81 (152)
Q Consensus 3 ~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~-~~~~i~I~tDS~yvv~~ 81 (152)
+.++..++|||||||.+|++++|+|+|+..++...........+|||+|||+|++.||+++. ...++.|+|||+||++
T Consensus 6 ~~~~~~~~iytDGS~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~tn~~AEl~Ai~~al~~a~~~~~~v~i~tDS~~vi~- 84 (142)
T 1zbf_A 6 KEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK- 84 (142)
T ss_dssp --CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEESCHHHHH-
T ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH-
T ss_conf 3442303899860469999545799999839979999668677660899999999999998615976999964178998-
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6522567765432003556421100023454102221055898017888845589999999
Q gi|254780796|r 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIAR 142 (152)
Q Consensus 82 i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~ 142 (152)
++.+|..+.|.......+.+.++++++..+...++|+|.|||||+|+++|++||+|||
T Consensus 85 ---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~wV~~H~~~~~N~~AD~lAK 142 (142)
T 1zbf_A 85 ---WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK 142 (142)
T ss_dssp ---HHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC---
T ss_pred ---HHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf ---9860807224567864499999999999999868446515850251136555565889