HHsearch alignment of GI: 254780796 and MMDB domain: 2qkb_A_
>2qkb_A (A:) Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=100.00 E-value=9.3e-36 Score=220.89 Aligned_cols=147 Identities=32% Similarity=0.474 Sum_probs=130.0
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEE---EEECCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEECCHHH
Q ss_conf 77788899996647579998218999996188127---8602227663027899999986411345--403788406455
Q gi|254780796|r 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALKY--PCKVLLYTDSSY 77 (152)
Q Consensus 3 ~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~---~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~i~I~tDS~y 77 (152)
+..|..++|||||||.+|++++|+|+++...+... ...+....+|||.|||.|++.||+.+.. ..+|.|+|||+|
T Consensus 2 ~~~~~~~~i~tDGs~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~tn~~aEl~Ai~~aL~~a~~~~~~~v~i~tDS~~ 81 (154)
T 2qkb_A 2 SHXGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSXF 81 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEE
T ss_conf 98898799998688789989997079999956987787610456765346899999999998765227653234324022
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 032565225677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r 78 VHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149 (152)
Q Consensus 78 vv~~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k 149 (152)
|+++++.|...|+.++|++..++++.+.++++.+..+.....|+|.|||||+++++|+.||.|||+|+...+
T Consensus 82 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~V~~H~~~~~N~~AD~lAk~a~~~~~ 153 (154)
T 2qkb_A 82 TINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGXDIQWXHVPGHSGFIGNEEADRLAREGAKQSE 153 (154)
T ss_dssp HHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC-
T ss_pred EEHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 320000015788761312234453016899999886643035444881687998225999999999986126