HHsearch alignment of GI: 254780796 and MMDB domain: 2zd1_A_430-557
>2zd1_A (A:430-557) Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 2ze2_A* 3bgr_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* 1tvr_A* 2hmi_A* 2vg5_A* 2vg6_A* 2vg7_A* ...
Probab=99.97 E-value=1.3e-31 Score=197.67 Aligned_cols=123 Identities=24% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
+.+..++|||||||++|++.+|+++++..... .......+||++|||.|++.||+... .++.|+|||+|++++++
T Consensus 6 p~~~~~~iytDGS~~~~~~~~g~~~~~~~~~~---~~~~~~~~t~~~aEl~a~~~al~~~~--~~i~i~sDS~~v~~~i~ 80 (128)
T 2zd1_A 6 PIVGAETFYVDGAANRETKLGKAGYVTNKGRQ---KVVPLTNTTNQKTELQAIYLALQDSG--LEVNIVTDSQYALGIIQ 80 (128)
T ss_dssp CCTTSCEEEEEEEECTTTCCEEEEEEETTSCE---EEEEECSCCHHHHHHHHHHHHHHHSC--SEEEEEECCHHHHHHHT
T ss_pred CCCCCEEEECCCCCCCCCCCCEEEEEECCCCE---EEEECCCCCHHHHHHHHHHHHHHHCC--CEEEEEEHHHHHHHHHH
T ss_conf 65566056646645679987389998179817---88508988689999999999998289--84999876799999985
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 2256776543200355642110002345410222105589801788884558999999999
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~a 144 (152)
.|.+.|+.+.|. +.+..+.+..+|.|.|||||+|++||++||+|||+|
T Consensus 81 ~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~v~~H~g~~gNe~AD~LAk~a 128 (128)
T 2zd1_A 81 AQPDKSESELVN-------------QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 128 (128)
T ss_dssp TCCSEESSHHHH-------------HHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HCCCCCCHHHHH-------------HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 299766579999-------------999998588977999926999993458999997478