HHsearch alignment of GI: 254780796 and MMDB domain: 3h08_A_
>3h08_A (A:) RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=100.00 E-value=2.4e-35 Score=218.54 Aligned_cols=141 Identities=47% Similarity=0.679 Sum_probs=120.8
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCH
Q ss_conf 88899996647579998218999996188127860222766302789999998641134540378840645503256522
Q gi|254780796|r 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQW 85 (152)
Q Consensus 6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~ 85 (152)
...++|||||||.+||+++|+|+|+..++...........+|||+||+.|++.||+.+.....+.|+|||+|++++++.|
T Consensus 2 ~~~~~iytDGS~~~n~~~~G~g~v~~~~~~~~~~~~~~~~~tn~~aE~~a~~~aL~~a~~~~~~~i~~DS~~vi~~i~~~ 81 (146)
T 3h08_A 2 EKTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKEPARVQLYSDSAYLVNAMNEG 81 (146)
T ss_dssp CCEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSCCEEEEEESCHHHHHHHHSS
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHEEEECHH
T ss_conf 97189998217999899738999999499789986564766518899988888775226776089994471113442114
Q ss_pred HHHHHH-HHHHCCCCCCCCCCHHHHHHHH-HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 567765-4320035564211000234541-0222105589801788884558999999999998
Q gi|254780796|r 86 IKKWQQ-NGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 86 ~~~W~~-n~wk~~~~~~v~N~dl~~~l~~-l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
.+.|.. ++|+++.+.++.+ .+++++.. +.....|+|.|||||+|++||++||+|||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~wv~~H~g~~gNe~AD~LAk~aa~~ 144 (146)
T 3h08_A 82 WLKRWVKNGWKTAAKKPVEN-IDLWQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHHTTCC----CCCTT-HHHHHHHHHHHHHSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 56777742255412772221-5788888887751764079905889973079999999999985