HHsearch alignment of GI: 254780796 and MMDB domain: 3hyf_A_
>3hyf_A (A:) Reverse transcriptase/rnaseh; HIV-1, hydrolase, DI-valent metal nucleic acid cleavage mechanism, DI-valent metal coordination; HET: ON1; 1.70A {Human immunodeficiency virus 1} PDB: 1o1w_A 1hrh_A 1rdh_A
Probab=100.00 E-value=1.2e-36 Score=225.88 Aligned_cols=139 Identities=33% Similarity=0.501 Sum_probs=121.4
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
..+..++|||||||.+|++++|+|+++........ .....+|+.+|+.|++.||+..... +.|+|||+|++++++
T Consensus 8 p~~~~~~iyTDGS~~~~~~~~g~g~~~~~~~~~~~---~~~~~~~~~ae~~A~~~A~~~~~~~--~~i~tds~~~~~~~~ 82 (150)
T 3hyf_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVV---TLTDTTNQKTELQAIYLALQDSGLE--VNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTSEEEEEEEEECTTTCCEEEEEEETTSCEEEE---EESSCCHHHHHHHHHHHHHHHSCSE--EEEEECCHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCEEEEEEEEECCEEEE---ECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCC
T ss_conf 88999789985897899988889999950686886---2256566899999999764127850--599943620034553
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 225677654320035564211000234541022-2105589801788884558999999999998
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~-~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
.|+.+|..|+|+++.+++++|.++|+++..++. ..+|+|.|||||+|++|||.||+|||+|+..
T Consensus 83 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~wV~gH~g~~gNe~AD~lAk~aa~~ 147 (150)
T 3hyf_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHTCC------CCTTHHHHHHHHHHHTTSSEEEEEECCTTSCCHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 22222110012345677530289999999987432376458886679980079999999999887