HHsearch results for GI: 254780796 and protein with PDBid: 1mu2_A
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.97 E-value=1.9e-30 Score=190.25 Aligned_cols=119 Identities=27% Similarity=0.355 Sum_probs=90.3
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf 88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI 86 (152)
Q Consensus 7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~ 86 (152)
...++||||||.+|++++|+|++. ..+...... ...+|||+|||.|+++||+... ..++|+|||+||+++++.+
T Consensus 435 ~~~~~~tDGs~~~~~~~g~~~~~~-~~~~~~~~~--~~~~tnq~aEl~A~~~al~~~~--~~~~I~tDS~Yv~~~~~~~- 508 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVT-DRGKDKVKK--LEQTTNQQAELEAFAMALTDSG--PKVNIIVDSQYVMGIVASQ- 508 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEE-TTSCEEEEE--ESSCCHHHHHHHHHHHHHHTSC--SEEEEEESCHHHHHHHHTC-
T ss_pred CCCEEEECCCCCCCCCCCEEEEEE-CCCCEEEEE--CCCCCHHHHHHHHHHHHHHHCC--CCEEEEEHHHHHHHHHHHC-
T ss_conf 983388667446799875699995-689556771--8998599999999999999689--9769982559998799729-
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHH-HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 677654320035564211000234-5410222105589801788884558999999999
Q gi|254780796|r 87 KKWQQNGWKTSDKKTVKNIDLWMK-FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144 (152)
Q Consensus 87 ~~W~~n~wk~~~~~~v~N~dl~~~-l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~a 144 (152)
|+ ...+ ++|.+ +.++.....|.|.||+||+|++||++||+||++|
T Consensus 509 -------~~-----~~~~-~~~~~~l~~l~~~~~v~~~hv~~H~g~~gNe~AD~LA~~~ 554 (555)
T 1mu2_A 509 -------PT-----ESES-KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp -------CS-----EESC-HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred -------CC-----CCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf -------96-----6524-9999999998578986999917889981389999999711