HHsearch results for GI: 254780796 and protein with PDBid: 1mu2_A

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.97  E-value=1.9e-30  Score=190.25  Aligned_cols=119  Identities=27%  Similarity=0.355  Sum_probs=90.3

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      ...++||||||.+|++++|+|++. ..+......  ...+|||+|||.|+++||+...  ..++|+|||+||+++++.+ 
T Consensus       435 ~~~~~~tDGs~~~~~~~g~~~~~~-~~~~~~~~~--~~~~tnq~aEl~A~~~al~~~~--~~~~I~tDS~Yv~~~~~~~-  508 (555)
T 1mu2_A          435 GAETFYTDGSCNRQSKEGKAGYVT-DRGKDKVKK--LEQTTNQQAELEAFAMALTDSG--PKVNIIVDSQYVMGIVASQ-  508 (555)
T ss_dssp             TCEEEEEEEEECTTTCCEEEEEEE-TTSCEEEEE--ESSCCHHHHHHHHHHHHHHTSC--SEEEEEESCHHHHHHHHTC-
T ss_pred             CCCEEEECCCCCCCCCCCEEEEEE-CCCCEEEEE--CCCCCHHHHHHHHHHHHHHHCC--CCEEEEEHHHHHHHHHHHC-
T ss_conf             983388667446799875699995-689556771--8998599999999999999689--9769982559998799729-


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHH-HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             677654320035564211000234-5410222105589801788884558999999999
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMK-FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA  144 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~-l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~a  144 (152)
                             |+     ...+ ++|.+ +.++.....|.|.||+||+|++||++||+||++|
T Consensus       509 -------~~-----~~~~-~~~~~~l~~l~~~~~v~~~hv~~H~g~~gNe~AD~LA~~~  554 (555)
T 1mu2_A          509 -------PT-----ESES-KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG  554 (555)
T ss_dssp             -------CS-----EESC-HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred             -------CC-----CCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             -------96-----6524-9999999998578986999917889981389999999711