HHsearch results for GI: 254780796 and protein with PDBid: 1ril_A
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=100.00 E-value=6.4e-41 Score=249.04 Aligned_cols=148 Identities=53% Similarity=0.935 Sum_probs=137.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 97777888999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 1 ~~~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
|.+.+++.|+|||||||++|||++|||+|+..++....+++.....|||+||+.|++.||++++....+.|+|||+|+++
T Consensus 1 ~~p~~~~~i~iYtDGS~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~tnn~aEl~ai~~al~~l~~~~~v~~~~ds~~~~~ 80 (166)
T 1ril_A 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKK 80 (166)
T ss_dssp -----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
T ss_conf 99887886899986788899997389999997891367435767663799999999999997077874999967489750
Q ss_pred CCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 56522-567765432003556421100023454102221055898017888845589999999999988
Q gi|254780796|r 81 GFSQW-IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148 (152)
Q Consensus 81 ~i~~~-~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~ 148 (152)
+++.+ ...|.+++|.+..+++++|.++|++++.+++.+.|+|+|||||+|++|||+||+|||+||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~V~~~wV~gHsg~~gNe~AD~LAk~aa~~~ 149 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 031044443244044530476332599999999985138547999277699753899999999999834