HHsearch results for GI: 254780796 and protein with PDBid: 1rw3_A
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=93.21 E-value=0.013 Score=33.68 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=38.4
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECC-C-CEEE---EE----CCCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEECCHH
Q ss_conf 9999664757999821899999618-8-1278---60----222766302789999998641134---540378840645
Q gi|254780796|r 9 VHAYTDGACSGNPGPGGWGVLLRYK-G-KEKI---IS----GGEKETTNNRMELMAAIKALTALK---YPCKVLLYTDSS 76 (152)
Q Consensus 9 i~IytDGS~~~n~~~aG~g~v~~~~-~-~~~~---~~----~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~~i~I~tDS~ 76 (152)
..|+||.|.. |+|+++... + .... .+ ..+..-+.+.-||.|++.||+... .+.+++|+||.+
T Consensus 347 ~~l~tDAS~~------g~gavL~Q~~~~~~~pI~f~Sr~l~~aE~~Y~~~ekEllAi~~al~~~~~~l~g~~~~v~TDh~ 420 (455)
T 1rw3_A 347 FELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred EEEEEECCCC------CCEEEEEEECCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 7999813668------7736999975998789999988699778786499999999999999999985897489997875
Q ss_pred HC
Q ss_conf 50
Q gi|254780796|r 77 YV 78 (152)
Q Consensus 77 yv 78 (152)
..
T Consensus 421 ~l 422 (455)
T 1rw3_A 421 VE 422 (455)
T ss_dssp TT
T ss_pred HH
T ss_conf 89