HHsearch results for GI: 254780796 and protein with PDBid: 2qkb_A
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=100.00 E-value=1.2e-40 Score=247.60 Aligned_cols=146 Identities=31% Similarity=0.467 Sum_probs=125.1
Q ss_pred CCCCE-EEEEECCCCCCCCCCCEEEEEEE---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCHHH
Q ss_conf 77888-99996647579998218999996---188127860222766302789999998641134--5403788406455
Q gi|254780796|r 4 KHLRE-VHAYTDGACSGNPGPGGWGVLLR---YKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPCKVLLYTDSSY 77 (152)
Q Consensus 4 ~~~~~-i~IytDGS~~~n~~~aG~g~v~~---~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~--~~~~i~I~tDS~y 77 (152)
+||.+ |+|||||||.+||+++|+|+++. ............+.+|||+|||.|++.||+++. ...++.|+|||+|
T Consensus 2 ~~m~~~i~vYtDGS~~~n~~~~g~ag~~v~~~~~~~~~~~~~~~~~~tn~~aEl~Ai~~aL~~~~~~~~~~v~i~tDs~~ 81 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMF 81 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 98888499998688678989997279999935887436752358887189999999999999875248842899706278
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 032565225677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r 78 VHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149 (152)
Q Consensus 78 vv~~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k 149 (152)
++++++.|+..|++++|+++.+++++|.+||+++.++...++|+|.|||||+|++||++||+|||+|+.+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~n~~l~~~l~~l~~~~~v~~~wV~gH~g~~gNe~AD~LAk~aa~~~~ 153 (154)
T 2qkb_A 82 TINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSE 153 (154)
T ss_dssp HHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 887777788898874022026873037999998898743663899981798999317999999999987024