HHsearch results for GI: 254780796 and protein with PDBid: 3hyf_A
>3hyf_A Reverse transcriptase/rnaseh; HIV-1, hydrolase, DI-valent metal nucleic acid cleavage mechanism, DI-valent metal coordination; HET: ON1; 1.70A {Human immunodeficiency virus 1} PDB: 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=100.00 E-value=1.6e-39 Score=241.19 Aligned_cols=140 Identities=34% Similarity=0.531 Sum_probs=119.7
Q ss_pred CCCCC-CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 77778-88999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r 2 DSKHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 2 ~~~~~-~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
...++ ...++||||||.+|++++|+|+++..+.. ... ....+|||+|||.|++.||+... ..+.|+|||+|+++
T Consensus 5 ~~~p~~~~~t~ytDGS~~~~~~~gg~g~~~~~~~~-~~~--~~~~~tn~~AEL~Ai~~aL~~~~--~~v~I~tDS~~vi~ 79 (150)
T 3hyf_A 5 EKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVV--TLTDTTNQKTELQAIYLALQDSG--LEVNIVTDSQYALG 79 (150)
T ss_dssp CSSCCTTSEEEEEEEEECTTTCCEEEEEEETTSCE-EEE--EESSCCHHHHHHHHHHHHHHHSC--SEEEEEECCHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCE-EEE--CCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECHHHHC
T ss_conf 66898999789983898999987799999966998-983--05877679999999999874077--51599972444403
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56522567765432003556421100023454102-2210558980178888455899999999999
Q gi|254780796|r 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS-AQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146 (152)
Q Consensus 81 ~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~-~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~ 146 (152)
+++.|+++|+.|+|+++.+++++|.++|+++++++ +..+|+|.|||||+|++||+.||+||++|+.
T Consensus 80 ~~~~~~~~w~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~V~~~~V~gH~g~~gNe~AD~LAk~aa~ 146 (150)
T 3hyf_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHHHHHHHTCC------CCTTHHHHHHHHHHHTTSSEEEEEECCTTSCCHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4522027887522213568864369999999999837780799990688998528999999999999