HHsearch results for GI: 254780796 and protein with PDBid: 3p1g_A
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 2hb5_A
Probab=99.98 E-value=3e-32 Score=200.29 Aligned_cols=129 Identities=24% Similarity=0.272 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHHH
Q ss_conf 89999664757999821899999618812786022276630278999999864113454037884064550325652256
Q gi|254780796|r 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIK 87 (152)
Q Consensus 8 ~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~~ 87 (152)
+++|||||||.+++|++|+|+++..++...........+|||+|||.|++.||+++.. ..+.|||||+|+++.+
T Consensus 23 ~~~iytDGS~~~~~g~~~~g~~i~~~~~~~~~~~~~~~~tn~~aEl~Ai~~Al~~~~~-~~i~I~tDS~~v~~~~----- 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEG-KKLNVYTDSRYAFATA----- 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTBT-SEEEEEECCHHHHHHH-----
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHH-----
T ss_conf 9899980898799998689999981897279831588765899999999999986215-8279997549998541-----
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECCCCCCH-----HHHHHHHHHHHHHHHH
Q ss_conf 77654320035564211000234541022-2105589801788884-----5589999999999988
Q gi|254780796|r 88 KWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAGNQ-----ENEKVDRIARNAAVSF 148 (152)
Q Consensus 88 ~W~~n~wk~~~~~~v~N~dl~~~l~~l~~-~~~v~~~~V~gH~g~~-----~N~~AD~lA~~aa~~~ 148 (152)
|....+++++|.+++.++...+. ..+|+|.|||||++.+ ||++||+|||+|+...
T Consensus 97 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~V~gH~~~~~~~~~gNe~AD~lAk~aa~~~ 157 (165)
T 3p1g_A 97 ------HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp ------HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ------1001344166599999999998676881279968988998761153799999999999568