HHSEARCH alignment of GI: 254780796 and SCOP domain: d1jl1a_

Alignment
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=4.7e-42  Score=254.06  Aligned_cols=141  Identities=55%  Similarity=1.000  Sum_probs=133.6

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      |.|+|||||||++||+++|||+|+..++....++.....+|||+|||+|++.||+++.....+.|+|||+|++.+++.|.
T Consensus         1 k~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~~~~~i~i~tds~~~i~~~~~~~   80 (152)
T d1jl1a_           1 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQWI   80 (152)
T ss_dssp             CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHTTH
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCHH
T ss_conf             98999974777899895899999998991788506647552789988645556665312204898613212597144043


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS  147 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~  147 (152)
                      ..|.+++|+.+.+++++|.++|+++..+..+++|+|.|||||+|++||++||+|||+|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~  141 (152)
T d1jl1a_          81 HNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMN  141 (152)
T ss_dssp             HHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCHHCCCCEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             6767361222046765218999999987514216899825637971079999999999858


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]