HHSEARCH alignment of GI: 254780796 and SCOP domain: d1rila_

Alignment
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=8.4e-45  Score=269.48  Aligned_cols=143  Identities=55%  Similarity=1.001  Sum_probs=133.4

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCC-H
Q ss_conf             889999664757999821899999618812786022276630278999999864113454037884064550325652-2
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQ-W   85 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~-~   85 (152)
                      +.|+|||||||++|||++|||+|+...+....+++....+|||+|||.|++.||++++....+.|+|||+|++++++. +
T Consensus         2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~i~tds~~~~~~~~~~~   81 (147)
T d1rila_           2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGW   81 (147)
T ss_dssp             CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHHHHHSSH
T ss_pred             CEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCC
T ss_conf             88999973178899996089999997991069842336663788999999887644047853999605466542521323


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r   86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK  149 (152)
Q Consensus        86 ~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k  149 (152)
                      ...|++++|.++.++||+|.|||++++.++..++|+|.|||||+|++||++||+||++||.+..
T Consensus        82 ~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~~  145 (147)
T d1rila_          82 LEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQA  145 (147)
T ss_dssp             HHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             2446544333424523005789999888764036535982577898055899999999988753


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]