HHSEARCH alignment of GI: 254780796 and SCOP domain: d1zbfa1

Alignment
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.97  E-value=1.7e-32  Score=200.31  Aligned_cols=122  Identities=22%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             EEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEEECCHHHCCCCCCCHHHH
Q ss_conf             99966475799982189999961881278602227663027899999986411345-40378840645503256522567
Q gi|254780796|r   10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PCKVLLYTDSSYVHKGFSQWIKK   88 (152)
Q Consensus        10 ~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-~~~i~I~tDS~yvv~~i~~~~~~   88 (152)
                      .|||||||+||||++|||+|+...+.+...+++.+.+|||+|||+|++.||+.+.. ..++.|||||+||++    |+.+
T Consensus         6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~~~i~I~tDS~yvi~----wv~~   81 (132)
T d1zbfa1           6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK----WVKD   81 (132)
T ss_dssp             SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEESCHHHHH----HHHH
T ss_pred             EEEEEECCCCCCCHHEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH----HHHH
T ss_conf             699850479999512699999759979999768675545999999999999986337965999965399999----9972


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             76543200355642110002345410---222105589801788884558999
Q gi|254780796|r   89 WQQNGWKTSDKKTVKNIDLWMKFVEA---SAQHKVDLYWIKGHAGNQENEKVD  138 (152)
Q Consensus        89 W~~n~wk~~~~~~v~N~dl~~~l~~l---~~~~~v~~~~V~gH~g~~~N~~AD  138 (152)
                      |+   |+|+.+++++|++||+.+.++   ++.+.+.|.||++|+..-||..||
T Consensus        82 ~~---~kt~~~~~vkN~~l~~~i~~a~~~lk~h~~~~~~~KW~~~~wG~i~AD  131 (132)
T d1zbfa1          82 KK---AKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD  131 (132)
T ss_dssp             TC---CCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred             CC---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             76---621767886568999999999999985876761587437002567789


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: BH0863-like Ribonuclease H
species: Bacillus halodurans [TaxId: 86665]