BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus
Liberibacter asiaticus str. psy62]
(152 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62]
gi|254040473|gb|ACT57269.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62]
Length = 152
Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats.
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL
Sbjct: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV
Sbjct: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI
Sbjct: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
>gi|222085133|ref|YP_002543663.1| ribonuclease H protein [Agrobacterium radiobacter K84]
gi|221722581|gb|ACM25737.1| ribonuclease H protein [Agrobacterium radiobacter K84]
Length = 146
Score = 148 bits (372), Expect = 3e-34, Method: Composition-based stats.
Identities = 90/146 (61%), Positives = 110/146 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDGACSGNPGPGGWG +LRY KEK + GGE ETTNNRMELMAAI +L ALK
Sbjct: 1 MKQVDIFTDGACSGNPGPGGWGAVLRYGDKEKELFGGEAETTNNRMELMAAISSLNALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G S+WI W++NGWKT+DKK VKN +LW EA +H+V L+W+
Sbjct: 61 PCEVNLYTDSKYVMDGISKWIFGWKKNGWKTADKKPVKNAELWQALEEARNRHQVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR FK K
Sbjct: 121 KGHAGHPENERADELARKGMEPFKRK 146
>gi|237746598|ref|ZP_04577078.1| ribonuclease H [Oxalobacter formigenes HOxBLS]
gi|229377949|gb|EEO28040.1| ribonuclease H [Oxalobacter formigenes HOxBLS]
Length = 149
Score = 148 bits (372), Expect = 3e-34, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 110/147 (74%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDS+ + EV YTDGAC GNPGPGGWGV LR G EK + GG+ +TTNNRMEL A I+AL
Sbjct: 1 MDSEKMSEVEIYTDGACRGNPGPGGWGVWLRANGHEKELFGGDADTTNNRMELTAVIEAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V+L+TDS YV KG ++WI KW++ GW+TSD+K VKN+DLWM+ EA+ +H +
Sbjct: 61 RVLKRPCRVVLHTDSQYVQKGITEWIHKWKERGWRTSDRKLVKNVDLWMELDEATRRHDI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG++ NEK D++A S
Sbjct: 121 RWRWVKGHAGHEGNEKADQLANRGVDS 147
>gi|15888119|ref|NP_353800.1| ribonuclease H [Agrobacterium tumefaciens str. C58]
gi|325292160|ref|YP_004278024.1| ribonuclease H [Agrobacterium sp. H13-3]
gi|22096081|sp|Q8UHA7|RNH_AGRT5 RecName: Full=Ribonuclease H; Short=RNase H
gi|15155751|gb|AAK86585.1| ribonuclease H [Agrobacterium tumefaciens str. C58]
gi|325060013|gb|ADY63704.1| ribonuclease H [Agrobacterium sp. H13-3]
Length = 146
Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats.
Identities = 85/146 (58%), Positives = 108/146 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK +SGGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGETEKELSGGEADTTNNRMELLAAISALNALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G ++WI W++ GWKT+D K VKN++LW A +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGITKWIFGWKKKGWKTADNKPVKNVELWQALEAAQERHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR FK +
Sbjct: 121 KGHAGHPENERADELARKGMEPFKRR 146
>gi|110804262|ref|YP_687781.1| ribonuclease H [Shigella flexneri 5 str. 8401]
gi|110613810|gb|ABF02477.1| RNase HI [Shigella flexneri 5 str. 8401]
Length = 192
Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QW+ W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 96 LKEHCEVILSTDSQYVRQGITQWLHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 156 EWVKGHAGHPENERCDELARAAAMN 180
>gi|300990976|ref|ZP_07179426.1| ribonuclease HI [Escherichia coli MS 200-1]
gi|300305642|gb|EFJ60162.1| ribonuclease HI [Escherichia coli MS 200-1]
gi|324009121|gb|EGB78340.1| ribonuclease HI [Escherichia coli MS 57-2]
gi|324011830|gb|EGB81049.1| ribonuclease HI [Escherichia coli MS 60-1]
Length = 179
Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 107/145 (73%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL A
Sbjct: 23 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSAGYTRTTNNRMELMAAIVALEA 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 83 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 142
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 143 EWVKGHAGHPENERCDELARAAAMN 167
>gi|89075026|ref|ZP_01161471.1| putative ribonuclease HI [Photobacterium sp. SKA34]
gi|89049265|gb|EAR54829.1| putative ribonuclease HI [Photobacterium sp. SKA34]
Length = 154
Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 102/142 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDG+C GNPGPGG+G +LRYK EK +S G TTNNRMEL+AAI+ L +LK
Sbjct: 2 MKQVEIYTDGSCLGNPGPGGYGAVLRYKQHEKELSDGFFMTTNNRMELLAAIEGLASLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + + +H+V +W+
Sbjct: 62 SCLVDLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQRLDTETQRHQVQWHWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDVLARAAAEK 143
>gi|331640664|ref|ZP_08341811.1| ribonuclease HI [Escherichia coli H736]
gi|331645383|ref|ZP_08346487.1| ribonuclease HI [Escherichia coli M605]
gi|331651119|ref|ZP_08352144.1| ribonuclease HI [Escherichia coli M718]
gi|331675872|ref|ZP_08376589.1| ribonuclease HI [Escherichia coli H591]
gi|332281344|ref|ZP_08393757.1| RNase HI [Shigella sp. D9]
gi|24050418|gb|AAN41862.1| RNase HI [Shigella flexneri 2a str. 301]
gi|281599566|gb|ADA72550.1| RNase HI [Shigella flexneri 2002017]
gi|331040038|gb|EGI12246.1| ribonuclease HI [Escherichia coli H736]
gi|331045545|gb|EGI17671.1| ribonuclease HI [Escherichia coli M605]
gi|331050860|gb|EGI22912.1| ribonuclease HI [Escherichia coli M718]
gi|331076432|gb|EGI47709.1| ribonuclease HI [Escherichia coli H591]
gi|332103696|gb|EGJ07042.1| RNase HI [Shigella sp. D9]
Length = 192
Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 96 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 156 EWVKGHAGHPENERCDELARAAAMN 180
>gi|90581657|ref|ZP_01237446.1| putative ribonuclease HI [Vibrio angustum S14]
gi|90437141|gb|EAS62343.1| putative ribonuclease HI [Vibrio angustum S14]
Length = 154
Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats.
Identities = 79/144 (54%), Positives = 103/144 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDG+C GNPGPGG+G +LRYK EK +S G TTNNRMEL+AAI+ L +LK
Sbjct: 2 MKQVEIYTDGSCLGNPGPGGYGAVLRYKQHEKELSDGFFMTTNNRMELLAAIEGLASLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + + +H+V +W+
Sbjct: 62 SCLVDLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQRLDTETQRHQVQWHWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR AA K
Sbjct: 122 KGHAGHPENERCDVLARAAAEKPK 145
>gi|91209282|ref|YP_539268.1| ribonuclease H [Escherichia coli UTI89]
gi|117622496|ref|YP_851409.1| ribonuclease H [Escherichia coli APEC O1]
gi|194432795|ref|ZP_03065080.1| ribonuclease H [Shigella dysenteriae 1012]
gi|237707791|ref|ZP_04538272.1| ribonuclease H [Escherichia sp. 3_2_53FAA]
gi|91070856|gb|ABE05737.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli UTI89]
gi|115511620|gb|ABI99694.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli APEC O1]
gi|194419057|gb|EDX35141.1| ribonuclease H [Shigella dysenteriae 1012]
gi|226899001|gb|EEH85260.1| ribonuclease H [Escherichia sp. 3_2_53FAA]
Length = 192
Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 96 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 156 EWVKGHAGHPENERCDELARAAAMN 180
>gi|300819829|ref|ZP_07100015.1| ribonuclease HI [Escherichia coli MS 107-1]
gi|300823400|ref|ZP_07103530.1| ribonuclease HI [Escherichia coli MS 119-7]
gi|300936086|ref|ZP_07151028.1| ribonuclease HI [Escherichia coli MS 21-1]
gi|300958304|ref|ZP_07170447.1| ribonuclease HI [Escherichia coli MS 175-1]
gi|301305772|ref|ZP_07211858.1| ribonuclease HI [Escherichia coli MS 124-1]
gi|301326099|ref|ZP_07219495.1| ribonuclease HI [Escherichia coli MS 78-1]
gi|331671743|ref|ZP_08372539.1| ribonuclease HI [Escherichia coli TA280]
gi|300315010|gb|EFJ64794.1| ribonuclease HI [Escherichia coli MS 175-1]
gi|300458761|gb|EFK22254.1| ribonuclease HI [Escherichia coli MS 21-1]
gi|300524018|gb|EFK45087.1| ribonuclease HI [Escherichia coli MS 119-7]
gi|300527587|gb|EFK48649.1| ribonuclease HI [Escherichia coli MS 107-1]
gi|300838947|gb|EFK66707.1| ribonuclease HI [Escherichia coli MS 124-1]
gi|300847159|gb|EFK74919.1| ribonuclease HI [Escherichia coli MS 78-1]
gi|315253529|gb|EFU33497.1| ribonuclease HI [Escherichia coli MS 85-1]
gi|331070732|gb|EGI42091.1| ribonuclease HI [Escherichia coli TA280]
Length = 179
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 23 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 83 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 142
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 143 EWVKGHAGHPENERCDELARAAAMN 167
>gi|26106555|gb|AAN78741.1|AE016755_241 Ribonuclease HI [Escherichia coli CFT073]
Length = 192
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G ++WI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 96 LKEHCEVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 156 EWVKGHAGHPENERCDELARAAAMN 180
>gi|300927907|ref|ZP_07143467.1| ribonuclease HI [Escherichia coli MS 187-1]
gi|300464062|gb|EFK27555.1| ribonuclease HI [Escherichia coli MS 187-1]
Length = 179
Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 23 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 83 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 142
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 143 EWVKGHAGHPENERCDELARAAAMN 167
>gi|227884793|ref|ZP_04002598.1| ribonuclease H [Escherichia coli 83972]
gi|300988193|ref|ZP_07178594.1| ribonuclease HI [Escherichia coli MS 45-1]
gi|301050550|ref|ZP_07197423.1| ribonuclease HI [Escherichia coli MS 185-1]
gi|227838234|gb|EEJ48700.1| ribonuclease H [Escherichia coli 83972]
gi|300297758|gb|EFJ54143.1| ribonuclease HI [Escherichia coli MS 185-1]
gi|300407507|gb|EFJ91045.1| ribonuclease HI [Escherichia coli MS 45-1]
gi|315292141|gb|EFU51493.1| ribonuclease HI [Escherichia coli MS 153-1]
Length = 179
Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 23 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G ++WI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 83 LKEHCEVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 142
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 143 EWVKGHAGHPENERCDELARAAAMN 167
>gi|260596630|ref|YP_003209201.1| ribonuclease H [Cronobacter turicensis z3032]
gi|260215807|emb|CBA28257.1| Ribonuclease H [Cronobacter turicensis z3032]
Length = 196
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 105/145 (72%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ ++V +TDG+C GNPGPGG+G +LRYK E+ S G + TTNNRMELMAAI +L A
Sbjct: 37 PEMRKQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEA 96
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L+ C V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A +QH++
Sbjct: 97 LREHCIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKW 156
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 157 EWVKGHAGHPENERCDELARAAAMA 181
>gi|309797930|ref|ZP_07692310.1| ribonuclease HI [Escherichia coli MS 145-7]
gi|308118470|gb|EFO55732.1| ribonuclease HI [Escherichia coli MS 145-7]
Length = 179
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL A
Sbjct: 23 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++
Sbjct: 83 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 142
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 143 EWVKGHAGHPENERCDELARAAAMN 167
>gi|254426948|ref|ZP_05040655.1| RNase H [Alcanivorax sp. DG881]
gi|196193117|gb|EDX88076.1| RNase H [Alcanivorax sp. DG881]
Length = 150
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/146 (52%), Positives = 100/146 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGAC GNPGPGGWG +L Y KEK + GGE ETTNNRMELMAAI AL L
Sbjct: 1 MKNVIIYTDGACRGNPGPGGWGAILLYGDKEKELFGGEPETTNNRMELMAAIVALETLNA 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS YV G +QW+ W++ GWKT+ K+ VKN+DLW + A +H++D W+
Sbjct: 61 PCQVVLTTDSKYVMDGITQWMANWKKRGWKTASKQPVKNVDLWQRLDAAVQRHEIDWQWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH+G+ NE+ D +A K +
Sbjct: 121 KGHSGHPGNERADALANRGIDEMKQQ 146
>gi|62126462|gb|AAX64165.1| RNase HI, degrades RNA of DNA-RNA hybrids [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
Length = 274
Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 106/145 (73%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL A
Sbjct: 118 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEA 177
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++
Sbjct: 178 LKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKW 237
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR AA++
Sbjct: 238 VWVKGHAGHPENERCDELARAAAMN 262
>gi|110834085|ref|YP_692944.1| ribonuclease H [Alcanivorax borkumensis SK2]
gi|122959514|sp|Q0VQ76|RNH_ALCBS RecName: Full=Ribonuclease H; Short=RNase H
gi|110647196|emb|CAL16672.1| ribonuclease H [Alcanivorax borkumensis SK2]
Length = 151
Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 100/146 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGAC GNPGPGGWG +L Y KEK + GGE ETTNNRMELMAAI AL L
Sbjct: 1 MKNVIIYTDGACRGNPGPGGWGAILLYGDKEKELFGGEPETTNNRMELMAAIVALETLNT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS YV G +QW+ W++ GWKT+ K+ VKN+DLW + A +H +D W+
Sbjct: 61 PCQVVLTTDSKYVMDGITQWMANWKKRGWKTASKQPVKNVDLWQRLDAAVQRHDIDWQWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH+G+ NE+ D +A K+K
Sbjct: 121 KGHSGHPGNERADALANRGIDEMKHK 146
>gi|190890679|ref|YP_001977221.1| ribonuclease H protein [Rhizobium etli CIAT 652]
gi|218674551|ref|ZP_03524220.1| ribonuclease H [Rhizobium etli GR56]
gi|190695958|gb|ACE90043.1| ribonuclease H protein [Rhizobium etli CIAT 652]
Length = 151
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 89/145 (61%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAISALQALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKTSDKK VKN +LW EA +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTSDKKPVKNAELWQALEEARNRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGMEPFKK 145
>gi|307941651|ref|ZP_07657006.1| ribonuclease HI [Roseibium sp. TrichSKD4]
gi|307775259|gb|EFO34465.1| ribonuclease HI [Roseibium sp. TrichSKD4]
Length = 150
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 86/144 (59%), Positives = 104/144 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPGPGGWG +LR+ EK +SGGE ETTNNRMEL AAIKAL L P
Sbjct: 5 KRVVIYTDGACSGNPGPGGWGAILRFGQHEKELSGGEGETTNNRMELTAAIKALNTLTRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS+YV G S+W+K W+ GWKT+DKK VKN DLW + EA +H V +W+K
Sbjct: 65 CAVDLYTDSTYVRSGISEWMKGWKARGWKTADKKPVKNADLWQELDEARDRHDVTWHWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR FK+
Sbjct: 125 GHAGHPDNERADELARGGMAPFKS 148
>gi|330445181|ref|ZP_08308833.1| ribonuclease HI [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328489372|dbj|GAA03330.1| ribonuclease HI [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 154
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPGPGG+G +LRYK EK +S G TTNNRMEL+AAI+ L +LK
Sbjct: 2 MKQVEIFTDGSCLGNPGPGGYGAVLRYKQHEKELSDGFFMTTNNRMELLAAIEGLASLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GW+T+DKK VKN DLW + + +H+V +W+
Sbjct: 62 SCRVDLTTDSQYVRQGITQWIHNWKKRGWQTADKKPVKNADLWQRLDTETQRHQVQWHWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA S
Sbjct: 122 KGHAGHPENERCDDLARAAAES 143
>gi|110633107|ref|YP_673315.1| ribonuclease H [Mesorhizobium sp. BNC1]
gi|122966185|sp|Q11KC5|RNH_MESSB RecName: Full=Ribonuclease H; Short=RNase H
gi|110284091|gb|ABG62150.1| RNase HI [Chelativorans sp. BNC1]
Length = 162
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 109/146 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDGACSGNPGPGGWG +LRY G EK + GGE +TTNNRMEL AAI+AL ALK
Sbjct: 1 MKRIEIFTDGACSGNPGPGGWGAILRYNGTEKELYGGEADTTNNRMELTAAIEALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS+Y+ G S WI+ W++NGW+T+D+K VKN +LW EA +HKV +W+
Sbjct: 61 PCEVDLHTDSNYLRDGISGWIEGWKRNGWRTADRKPVKNAELWQALDEARRRHKVHWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GHAG+ ENE+ D +AR FK K
Sbjct: 121 RGHAGHPENERADALARAGMAPFKKK 146
>gi|238790134|ref|ZP_04633911.1| Ribonuclease H [Yersinia frederiksenii ATCC 33641]
gi|238721803|gb|EEQ13466.1| Ribonuclease H [Yersinia frederiksenii ATCC 33641]
Length = 159
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 1 MDSKHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
M + ++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI A
Sbjct: 1 MSLPEMTKQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYFLTTNNRMELMAAIVA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L AL PCKV L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H
Sbjct: 61 LEALTSPCKVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHT 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V W+KGHAG+ ENE+ D +AR A S
Sbjct: 121 VQWEWVKGHAGHPENERCDELARQGANS 148
>gi|327192538|gb|EGE59489.1| ribonuclease H protein [Rhizobium etli CNPAF512]
Length = 151
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 88/145 (60%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAISALQALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKT+DKK VKN +LW EA +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTADKKPVKNAELWQALEEARNRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGMEPFKK 145
>gi|86356609|ref|YP_468501.1| ribonuclease H [Rhizobium etli CFN 42]
gi|123765846|sp|Q2KBL2|RNH_RHIEC RecName: Full=Ribonuclease H; Short=RNase H
gi|86280711|gb|ABC89774.1| ribonuclease H protein [Rhizobium etli CFN 42]
Length = 151
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 91/145 (62%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE ETTNNRMELMAAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGEVEKELCGGEAETTNNRMELMAAISALQALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKTSDKK VKN +LW EA +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTSDKKPVKNAELWQALEEARNRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGMEPFKK 145
>gi|13476236|ref|NP_107806.1| ribonuclease H [Mesorhizobium loti MAFF303099]
gi|22096083|sp|Q985W1|RNH_RHILO RecName: Full=Ribonuclease H; Short=RNase H
gi|14026996|dbj|BAB53592.1| ribonuclease H [Mesorhizobium loti MAFF303099]
Length = 177
Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats.
Identities = 87/144 (60%), Positives = 106/144 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGACSGNPGPGGWG +LR+ G K +SGGE ETTNNRMEL+AAI AL ALK P
Sbjct: 3 KQVEIFTDGACSGNPGPGGWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L+TDS YV G S+WI W++NGWKT+DKK VKN +LW EA+ +HKV W+K
Sbjct: 63 CTVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANRRHKVTWNWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ ENE+ D +AR FK
Sbjct: 123 GHAGHTENERADELAREGMAPFKK 146
>gi|218462362|ref|ZP_03502453.1| ribonuclease H [Rhizobium etli Kim 5]
gi|218660645|ref|ZP_03516575.1| ribonuclease H [Rhizobium etli IE4771]
Length = 151
Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats.
Identities = 90/145 (62%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMELMAAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELMAAISALQALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKTSDKK VKN +LW EA +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTSDKKPVKNAELWQALEEARNRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGMEPFKK 145
>gi|238893207|ref|YP_002917941.1| ribonuclease H [Klebsiella pneumoniae NTUH-K2044]
gi|238545523|dbj|BAH61874.1| RNase HI [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 192
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 105/143 (73%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G ++RY+ EK S G + TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QHK+
Sbjct: 96 LKEHCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W+KGHAG+ ENE+ D +AR AA
Sbjct: 156 EWVKGHAGHPENERCDELARAAA 178
>gi|209548219|ref|YP_002280136.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|218681672|ref|ZP_03529473.1| ribonuclease H [Rhizobium etli CIAT 894]
gi|209533975|gb|ACI53910.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 151
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 87/145 (60%), Positives = 107/145 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAISALQALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKT+DKK VKN +LW EA +H V L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTADKKPVKNAELWQALEEARNRHTVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGMEPFKK 145
>gi|222147802|ref|YP_002548759.1| ribonuclease H [Agrobacterium vitis S4]
gi|221734790|gb|ACM35753.1| ribonuclease H [Agrobacterium vitis S4]
Length = 154
Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 84/145 (57%), Positives = 106/145 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL LK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGEVEKDLCGGEADTTNNRMELLAAITALNTLKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV G S+WI W++NGWKT+DKK VKN +LW + A+ +HKV +W+
Sbjct: 61 PCEVDLHTDSKYVMDGISKWIFGWKKNGWKTADKKPVKNGELWQQLDAANQRHKVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARKGMEPFKK 145
>gi|238750480|ref|ZP_04611981.1| Ribonuclease H [Yersinia rohdei ATCC 43380]
gi|238711411|gb|EEQ03628.1| Ribonuclease H [Yersinia rohdei ATCC 43380]
Length = 154
Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK E+ S G TTNNRMELMAAI +L AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYFLTTNNRMELMAAIVSLEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H V W+K
Sbjct: 63 CVVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAIQTHTVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELARQGANS 143
>gi|192361631|ref|YP_001982514.1| RNase H [Cellvibrio japonicus Ueda107]
gi|190687796|gb|ACE85474.1| RNase H [Cellvibrio japonicus Ueda107]
Length = 144
Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats.
Identities = 78/144 (54%), Positives = 103/144 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGWG LLRY EK + GGE ETTNNRMELMAAI AL+ALK
Sbjct: 1 MKTVEIFTDGACKGNPGPGGWGALLRYGQVEKSLYGGEPETTNNRMELMAAIAALSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V++ TDS YV KG ++W+ W++NGW+T+ K+ VKN DLW + E + +H+V W+
Sbjct: 61 PCAVVITTDSQYVRKGITEWMPGWKRNGWRTAAKEPVKNADLWQRLDEQNQRHQVTWKWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+G++ENE D +A +
Sbjct: 121 KGHSGHRENELADALANRGIDELR 144
>gi|296284546|ref|ZP_06862544.1| ribonuclease H [Citromicrobium bathyomarinum JL354]
Length = 144
Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 106/144 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V +TDGAC GNPGPGGWG LLR EK +SG E +TTNNRME+ AAI+AL+ALK
Sbjct: 1 MSDVQIFTDGACKGNPGPGGWGALLRKGKTEKELSGAEPDTTNNRMEMTAAIRALSALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LYTDS Y+ G ++W+ WQ+ GW+T+DKK VKN DLW + E +A H V +W+
Sbjct: 61 GCTVDLYTDSKYLIDGITKWLPGWQKRGWRTADKKPVKNEDLWRQLAELTATHSVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH+G+ ENE+VDR+A +AA S +
Sbjct: 121 RGHSGHAENERVDRLASDAAESLR 144
>gi|254786148|ref|YP_003073577.1| ribonuclease HI [Teredinibacter turnerae T7901]
gi|237685065|gb|ACR12329.1| ribonuclease HI [Teredinibacter turnerae T7901]
Length = 147
Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 102/143 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDGAC GNPGPGGWGVLLRY KEK + GGE++TTNNRMEL AAI+ L+ALK
Sbjct: 1 MKKIEIFTDGACRGNPGPGGWGVLLRYGDKEKTLHGGERDTTNNRMELRAAIEGLSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV KG ++WI W++ GW+T+ KK V N+DLW A QH++ W+
Sbjct: 61 PCEVRLVTDSQYVRKGITEWIANWKKRGWRTAAKKPVMNVDLWQALDTACDQHQITWEWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G++ENE D +A
Sbjct: 121 KGHSGHRENEIADELANLGIDEL 143
>gi|116250805|ref|YP_766643.1| ribonuclease H [Rhizobium leguminosarum bv. viciae 3841]
gi|241203400|ref|YP_002974496.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|123261865|sp|Q1MKH6|RNH_RHIL3 RecName: Full=Ribonuclease H; Short=RNase H
gi|115255453|emb|CAK06529.1| putative ribonuclease HI [Rhizobium leguminosarum bv. viciae 3841]
gi|240857290|gb|ACS54957.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 151
Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats.
Identities = 87/145 (60%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL+ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAISALSALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGWKT+DKK VKN +LW A +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWKTADKKPVKNAELWQALEAARDRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARKGMEPFKK 145
>gi|291616382|ref|YP_003519124.1| RnhA [Pantoea ananatis LMG 20103]
gi|291151412|gb|ADD75996.1| RnhA [Pantoea ananatis LMG 20103]
Length = 163
Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 104/145 (71%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ ++V +TDG+C GNPGPGG+G +LRY EK S G + TTNNRMELMAAI +L A
Sbjct: 7 PEMRKQVEIFTDGSCLGNPGPGGYGAILRYGQHEKTFSAGYRLTTNNRMELMAAIVSLEA 66
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L PC V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A + H++
Sbjct: 67 LTQPCDVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDTALSTHQIQW 126
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D +AR+AA +
Sbjct: 127 EWVKGHAGHPENERCDELARSAANN 151
>gi|15964667|ref|NP_385020.1| ribonuclease H [Sinorhizobium meliloti 1021]
gi|307304245|ref|ZP_07583997.1| ribonuclease H [Sinorhizobium meliloti BL225C]
gi|307320550|ref|ZP_07599965.1| ribonuclease H [Sinorhizobium meliloti AK83]
gi|21362888|sp|Q92RG0|RNH_RHIME RecName: Full=Ribonuclease H; Short=RNase H
gi|15073845|emb|CAC45486.1| Probable ribonuclease HI protein [Sinorhizobium meliloti 1021]
gi|306893826|gb|EFN24597.1| ribonuclease H [Sinorhizobium meliloti AK83]
gi|306902713|gb|EFN33306.1| ribonuclease H [Sinorhizobium meliloti BL225C]
Length = 153
Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats.
Identities = 86/145 (59%), Positives = 106/145 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ VH +TDGACSGNPGPGGWG +LRY EK +SGGE ETTNNRMEL+AAI AL AL+
Sbjct: 1 MKHVHIFTDGACSGNPGPGGWGAVLRYGDVEKEMSGGEAETTNNRMELLAAISALNALRQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV G S+WI W++NGWKT D+K VKN +LW EA +H V +W+
Sbjct: 61 PCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDEARNRHNVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARKGMEPFKK 145
>gi|238799154|ref|ZP_04642607.1| Ribonuclease H [Yersinia mollaretii ATCC 43969]
gi|238716995|gb|EEQ08858.1| Ribonuclease H [Yersinia mollaretii ATCC 43969]
Length = 154
Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK E+ S G + TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H V W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHTVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELARQGANS 143
>gi|85373137|ref|YP_457199.1| ribonuclease H [Erythrobacter litoralis HTCC2594]
gi|123099568|sp|Q2ND39|RNH_ERYLH RecName: Full=Ribonuclease H; Short=RNase H
gi|84786220|gb|ABC62402.1| ribonuclease H [Erythrobacter litoralis HTCC2594]
Length = 144
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 80/141 (56%), Positives = 101/141 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDGAC GNPGPGGWGVLLR EK +SGGE ETTNNRMEL AAI+ L AL
Sbjct: 1 MKKVEIFTDGACKGNPGPGGWGVLLRMGKHEKELSGGEPETTNNRMELRAAIEGLNALIE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G ++W+ W++ GW + KK V+N DLW +EA +HKV +W+
Sbjct: 61 PCEVELYTDSKYVVDGITKWVHGWKKRGWVNASKKPVRNDDLWHDLIEAELRHKVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGH G+ ENE+ DR+A AA
Sbjct: 121 KGHNGHAENERADRLASEAAD 141
>gi|290509929|ref|ZP_06549299.1| ribonuclease HI [Klebsiella sp. 1_1_55]
gi|289776645|gb|EFD84643.1| ribonuclease HI [Klebsiella sp. 1_1_55]
Length = 192
Score = 143 bits (359), Expect = 9e-33, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 105/143 (73%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G ++RY+ EK S G + TTNNRMELMAAI AL A
Sbjct: 36 PEMLKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEA 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK C+V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QHK+
Sbjct: 96 LKEHCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKW 155
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W+KGHAG+ ENE+ D +AR AA
Sbjct: 156 EWVKGHAGHPENERCDELARAAA 178
>gi|114706694|ref|ZP_01439595.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
gi|114538086|gb|EAU41209.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
Length = 153
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ V YTDGACSGNPGPGGWGVLLR+ K + GGE TTNNRMEL+AAI+AL
Sbjct: 1 MSKEN--RVEIYTDGACSGNPGPGGWGVLLRFGEHSKELKGGEANTTNNRMELLAAIEAL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ALK PC + L++DSSY+ G +WI W++NGWKT+DKK VKN +LW + E ++H V
Sbjct: 59 SALKRPCAIDLHSDSSYMRDGIMKWIHGWKKNGWKTADKKPVKNAELWQRLDEERSRHDV 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGHAG++ NE+ D++A + FK K
Sbjct: 119 TFHWVKGHAGHEGNERADQLANDGMEPFKKK 149
>gi|293392716|ref|ZP_06637035.1| ribonuclease HI [Serratia odorifera DSM 4582]
gi|291424833|gb|EFE98043.1| ribonuclease HI [Serratia odorifera DSM 4582]
Length = 177
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 81/143 (56%), Positives = 104/143 (72%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRMELMAAI AL A
Sbjct: 21 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLTTNNRMELMAAIVALEA 80
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L PC+V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A A+H +
Sbjct: 81 LTAPCEVILSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIARHTIRW 140
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W+KGHAG+ ENE+ D +AR AA
Sbjct: 141 EWVKGHAGHPENERCDVLAREAA 163
>gi|22126971|ref|NP_670394.1| ribonuclease H [Yersinia pestis KIM 10]
gi|45442536|ref|NP_994075.1| ribonuclease H [Yersinia pestis biovar Microtus str. 91001]
gi|51597280|ref|YP_071471.1| ribonuclease H [Yersinia pseudotuberculosis IP 32953]
gi|108806556|ref|YP_650472.1| ribonuclease H [Yersinia pestis Antiqua]
gi|108813077|ref|YP_648844.1| ribonuclease H [Yersinia pestis Nepal516]
gi|145598913|ref|YP_001162989.1| ribonuclease H [Yersinia pestis Pestoides F]
gi|149366916|ref|ZP_01888950.1| ribonuclease HI [Yersinia pestis CA88-4125]
gi|153949812|ref|YP_001400035.1| ribonuclease H [Yersinia pseudotuberculosis IP 31758]
gi|162419608|ref|YP_001607084.1| ribonuclease H [Yersinia pestis Angola]
gi|165924761|ref|ZP_02220593.1| RNase H [Yersinia pestis biovar Orientalis str. F1991016]
gi|165938296|ref|ZP_02226854.1| RNase H [Yersinia pestis biovar Orientalis str. IP275]
gi|166011974|ref|ZP_02232872.1| RNase H [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211295|ref|ZP_02237330.1| RNase H [Yersinia pestis biovar Antiqua str. B42003004]
gi|167399933|ref|ZP_02305451.1| RNase H [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419598|ref|ZP_02311351.1| RNase H [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167423920|ref|ZP_02315673.1| RNase H [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|170023354|ref|YP_001719859.1| ribonuclease H [Yersinia pseudotuberculosis YPIII]
gi|186896385|ref|YP_001873497.1| ribonuclease H [Yersinia pseudotuberculosis PB1/+]
gi|218928250|ref|YP_002346125.1| ribonuclease H [Yersinia pestis CO92]
gi|229841012|ref|ZP_04461171.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843117|ref|ZP_04463263.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. India 195]
gi|229895465|ref|ZP_04510637.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Pestoides A]
gi|229903520|ref|ZP_04518633.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Nepal516]
gi|270487301|ref|ZP_06204375.1| ribonuclease HI [Yersinia pestis KIM D27]
gi|294503097|ref|YP_003567159.1| ribonuclease H [Yersinia pestis Z176003]
gi|21362886|sp|Q8ZH30|RNH_YERPE RecName: Full=Ribonuclease HI; Short=RNase HI
gi|81825740|sp|Q667M7|RNH_YERPS RecName: Full=Ribonuclease H; Short=RNase H
gi|122979768|sp|Q1CAJ5|RNH_YERPA RecName: Full=Ribonuclease H; Short=RNase H
gi|122980009|sp|Q1CFI6|RNH_YERPN RecName: Full=Ribonuclease H; Short=RNase H
gi|189043723|sp|A7FFK7|RNH_YERP3 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043724|sp|A4TL54|RNH_YERPP RecName: Full=Ribonuclease H; Short=RNase H
gi|238687260|sp|A9R0G0|RNH_YERPG RecName: Full=Ribonuclease H; Short=RNase H
gi|238688496|sp|B1JR46|RNH_YERPY RecName: Full=Ribonuclease H; Short=RNase H
gi|238691454|sp|B2KAC9|RNH_YERPB RecName: Full=Ribonuclease H; Short=RNase H
gi|21960014|gb|AAM86645.1|AE013910_7 RNase HI [Yersinia pestis KIM 10]
gi|45437401|gb|AAS62952.1| ribonuclease HI [Yersinia pestis biovar Microtus str. 91001]
gi|51590562|emb|CAH22203.1| ribonuclease HI [Yersinia pseudotuberculosis IP 32953]
gi|108776725|gb|ABG19244.1| RNase HI [Yersinia pestis Nepal516]
gi|108778469|gb|ABG12527.1| RNase HI [Yersinia pestis Antiqua]
gi|115346861|emb|CAL19747.1| ribonuclease HI [Yersinia pestis CO92]
gi|145210609|gb|ABP40016.1| RNase HI [Yersinia pestis Pestoides F]
gi|149291290|gb|EDM41365.1| ribonuclease HI [Yersinia pestis CA88-4125]
gi|152961307|gb|ABS48768.1| RNase H [Yersinia pseudotuberculosis IP 31758]
gi|162352423|gb|ABX86371.1| RNase H [Yersinia pestis Angola]
gi|165913674|gb|EDR32293.1| RNase H [Yersinia pestis biovar Orientalis str. IP275]
gi|165923821|gb|EDR40953.1| RNase H [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989141|gb|EDR41442.1| RNase H [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207066|gb|EDR51546.1| RNase H [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962339|gb|EDR58360.1| RNase H [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167050641|gb|EDR62049.1| RNase H [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167056769|gb|EDR66532.1| RNase H [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169749888|gb|ACA67406.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII]
gi|186699411|gb|ACC90040.1| ribonuclease H [Yersinia pseudotuberculosis PB1/+]
gi|229679290|gb|EEO75393.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Nepal516]
gi|229689464|gb|EEO81525.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. India 195]
gi|229697378|gb|EEO87425.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701620|gb|EEO89647.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Pestoides A]
gi|262361134|gb|ACY57855.1| ribonuclease H [Yersinia pestis D106004]
gi|262365377|gb|ACY61934.1| ribonuclease H [Yersinia pestis D182038]
gi|270335805|gb|EFA46582.1| ribonuclease HI [Yersinia pestis KIM D27]
gi|294353556|gb|ADE63897.1| ribonuclease H [Yersinia pestis Z176003]
gi|320014217|gb|ADV97788.1| ribonuclease H [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 154
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H + W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAIQSHTIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELARQGANS 143
>gi|332162777|ref|YP_004299354.1| ribonuclease H [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325667007|gb|ADZ43651.1| ribonuclease H [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330861138|emb|CBX71401.1| ribonuclease H [Yersinia enterocolitica W22703]
Length = 154
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYFLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ WKT+D+K V+N+DLW + A H++ W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRDWKTTDRKPVRNVDLWQRLDLAIQTHQIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELAREGANS 143
>gi|238784820|ref|ZP_04628821.1| Ribonuclease H [Yersinia bercovieri ATCC 43970]
gi|238714236|gb|EEQ06247.1| Ribonuclease H [Yersinia bercovieri ATCC 43970]
Length = 154
Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK E+ S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYYLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H V W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHTVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELARQGANS 143
>gi|123441272|ref|YP_001005259.1| ribonuclease H [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|189043722|sp|A1JKB1|RNH_YERE8 RecName: Full=Ribonuclease H; Short=RNase H
gi|122088233|emb|CAL11022.1| ribonuclease HI [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 154
Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYFLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H + W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHVIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELAREGANS 143
>gi|270263404|ref|ZP_06191673.1| ribonuclease H [Serratia odorifera 4Rx13]
gi|270042288|gb|EFA15383.1| ribonuclease H [Serratia odorifera 4Rx13]
Length = 177
Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 102/143 (71%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRMELMAAI AL A
Sbjct: 21 PEMLKQVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLTTNNRMELMAAIVALEA 80
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L PC+V L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A H +
Sbjct: 81 LTAPCEVTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIQTHTIKW 140
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W+KGHAG+ ENE+ D +AR+AA
Sbjct: 141 EWVKGHAGHPENERCDVLARDAA 163
>gi|76811168|ref|YP_333004.1| RNase H [Burkholderia pseudomallei 1710b]
gi|76580621|gb|ABA50096.1| RNase H [Burkholderia pseudomallei 1710b]
Length = 146
Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL ALK
Sbjct: 1 MQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEPGTTNNRMELTAVIAALEALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH V+ W+
Sbjct: 61 PCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDVEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGHAG+ ENE+ D +A S
Sbjct: 121 KGHAGHPENERADALANRGVESL 143
>gi|163760342|ref|ZP_02167424.1| ribonuclease H [Hoeflea phototrophica DFL-43]
gi|162282293|gb|EDQ32582.1| ribonuclease H [Hoeflea phototrophica DFL-43]
Length = 154
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 86/146 (58%), Positives = 107/146 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDGACSGNPGPGGWG +LRY EK +SGGE TTNNRMEL+AAI AL ALK
Sbjct: 1 MKKVEVFTDGACSGNPGPGGWGAILRYGEIEKEMSGGEAATTNNRMELLAAINALNALKG 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L+TDS YV G S+WI W++NGWKT+ KK VKN +LW EA HKV+ +W+
Sbjct: 61 ACEVELHTDSKYVMDGISKWIHGWKKNGWKTAAKKPVKNAELWQALEEARKPHKVNWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR +KNK
Sbjct: 121 KGHAGHPENERADELARFGMEPYKNK 146
>gi|78485273|ref|YP_391198.1| ribonuclease H [Thiomicrospira crunogena XCL-2]
gi|123555633|sp|Q31H49|RNH_THICR RecName: Full=Ribonuclease H; Short=RNase H
gi|78363559|gb|ABB41524.1| RNase HI [Thiomicrospira crunogena XCL-2]
Length = 145
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 97/143 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV +TDG C GNPGPGGWG LLR+ G EK + G E +TTNNRMEL AAI+ L ALK
Sbjct: 1 MQEVELFTDGGCRGNPGPGGWGALLRFGGVEKELKGAELDTTNNRMELTAAIEGLKALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV L TDS YV G +QW+ W++N WKT+ KK VKN DLW EA H V W+
Sbjct: 61 PCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKNKDLWQALDEALQPHDVTWAWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ ENE+VD +A A
Sbjct: 121 KGHSGHDENERVDELANQAMDEL 143
>gi|227821114|ref|YP_002825084.1| ribonuclease H [Sinorhizobium fredii NGR234]
gi|227340113|gb|ACP24331.1| ribonuclease H [Sinorhizobium fredii NGR234]
Length = 153
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 86/145 (59%), Positives = 105/145 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE ETTNNRMELMAAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGEVEKEMFGGEAETTNNRMELMAAISALNALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV G S+WI W++NGWKT D+K VKN +LW EA +H+V +W+
Sbjct: 61 PCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDEARDRHQVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARKGMEPFKK 145
>gi|237807685|ref|YP_002892125.1| ribonuclease H [Tolumonas auensis DSM 9187]
gi|259494081|sp|C4LC60|RNH_TOLAT RecName: Full=Ribonuclease H; Short=RNase H
gi|237499946|gb|ACQ92539.1| Ribonuclease H [Tolumonas auensis DSM 9187]
Length = 154
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 103/142 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+ +L YK K ++ G + TTNNRMELMAAI L +L
Sbjct: 2 LKQITLYTDGSCLGNPGPGGYAAVLIYKQHRKELAQGYELTTNNRMELMAAIAGLQSLSE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV +G +QWI W++ GWKT++++ VKN+DLW+ +H V+ +W+
Sbjct: 62 PCQVRLTTDSQYVRQGITQWIHGWKKKGWKTANREPVKNVDLWLLLDSEIQRHDVEWFWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE+ D +ARNAA++
Sbjct: 122 KGHSGHPENERCDELARNAALA 143
>gi|254514368|ref|ZP_05126429.1| ribonuclease HI [gamma proteobacterium NOR5-3]
gi|219676611|gb|EED32976.1| ribonuclease HI [gamma proteobacterium NOR5-3]
Length = 145
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGWG LL Y GKE+ + G E TTNNRMEL AAI+ L AL
Sbjct: 1 MKNVELFTDGACRGNPGPGGWGALLCYAGKEREVYGAEPNTTNNRMELSAAIEGLAALSE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS+YV KG ++W+ W++ GWKTS KK V N DLW + +HKV W+
Sbjct: 61 PCAVRLVTDSTYVMKGITEWLPNWKRRGWKTSAKKPVANADLWQLLEVQNQRHKVSWEWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ NE+ D +A A
Sbjct: 121 KGHSGHPGNERADALANRAIDEM 143
>gi|83309861|ref|YP_420125.1| ribonuclease HI [Magnetospirillum magneticum AMB-1]
gi|123740549|sp|Q2W9A9|RNH_MAGMM RecName: Full=Ribonuclease H; Short=RNase H
gi|82944702|dbj|BAE49566.1| Ribonuclease HI [Magnetospirillum magneticum AMB-1]
Length = 154
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 103/150 (68%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ V YTDGACSGNPGPGGWG +LR+KG EK + GGE TTNNRME+MA + AL
Sbjct: 4 TAPKPETVEIYTDGACSGNPGPGGWGAILRFKGIEKELKGGESPTTNNRMEMMAVLVALN 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L C V +YTDS YV KG ++W++ W+ GWKT+DKK VKN DLW EA+A+HKV
Sbjct: 64 TLTRSCAVDVYTDSEYVKKGMTEWLRGWKARGWKTADKKPVKNDDLWKALDEAAARHKVS 123
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGHAG+ ENE+ D +AR + +
Sbjct: 124 WHWVKGHAGHPENERADALAREGIADLRAR 153
>gi|92119198|ref|YP_578927.1| ribonuclease H [Nitrobacter hamburgensis X14]
gi|123264908|sp|Q1QH30|RNH_NITHX RecName: Full=Ribonuclease H; Short=RNase H
gi|91802092|gb|ABE64467.1| RNase HI [Nitrobacter hamburgensis X14]
Length = 151
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 103/151 (68%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S L V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MNSSALPHVTIFTDGACSGNPGPGGWGAILRFGEIEKELKGGEPHTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK V L TDS YV +G + WI W++NGW+T+DKK VKN DLW + A H+V
Sbjct: 61 EALKKAASVDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNADLWQRLDTALQPHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+WIKGHAG+ ENE+ D++AR + K
Sbjct: 121 RWHWIKGHAGHDENERADQLAREGVALARLK 151
>gi|332306363|ref|YP_004434214.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332173692|gb|AEE22946.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 153
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 101/142 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C GNPGPGG+G +L + +K +S G TTNNRMEL+A I+AL +L
Sbjct: 1 MKHIEIYTDGSCLGNPGPGGYGAVLLFGKHKKELSQGFTHTTNNRMELLATIEALASLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV L TDS YV G +QWIK W++NGW+TSDKK VKN+DLW + E QH+V +W+
Sbjct: 61 TCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVNQHQVQWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ NE D +ARNAA S
Sbjct: 121 KGHSGHPMNELCDVLARNAASS 142
>gi|194364622|ref|YP_002027232.1| ribonuclease H [Stenotrophomonas maltophilia R551-3]
gi|194347426|gb|ACF50549.1| ribonuclease H [Stenotrophomonas maltophilia R551-3]
Length = 150
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 104/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRYKG E+ +SGGE TTNNRMELMAAI L L
Sbjct: 1 MKTIEIHTDGSCLGNPGPGGWAALLRYKGHERELSGGEAHTTNNRMELMAAISGLETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC ++LYTDS YV +G +QW+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCDIVLYTDSQYVRQGLTQWMPGWIRKNWKTAGGDPVKNRELWERLHAATLRHQIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ +NE+VD +ARNAA+ ++
Sbjct: 121 KGHSGDPDNERVDTLARNAAIQIRD 145
>gi|238921063|ref|YP_002934578.1| ribonuclease HI [Edwardsiella ictaluri 93-146]
gi|259494079|sp|C5BEV5|RNH_EDWI9 RecName: Full=Ribonuclease H; Short=RNase H
gi|238870632|gb|ACR70343.1| ribonuclease HI [Edwardsiella ictaluri 93-146]
Length = 154
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 103/140 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+ EK +S G + TTNNRMELMAAI AL L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYRLTTNNRMELMAAIVALETLTS 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L++DS YV +G +QWI W++ WKT+DKK VKN+DLW + +A H+V+ WI
Sbjct: 62 ACQVALFSDSQYVRQGITQWIHGWKRRDWKTADKKPVKNVDLWQRLDQAIGPHQVEWIWI 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARRAA 141
>gi|307294522|ref|ZP_07574364.1| ribonuclease H [Sphingobium chlorophenolicum L-1]
gi|306878996|gb|EFN10214.1| ribonuclease H [Sphingobium chlorophenolicum L-1]
Length = 148
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 88/145 (60%), Positives = 112/145 (77%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L EV +TDGAC GNPGPGGWG +LR+ KEK ISGGE +TTNNRME+MAA++AL LK
Sbjct: 4 LPEVEIFTDGACKGNPGPGGWGAVLRFGEKEKDISGGEVQTTNNRMEMMAAVQALETLKR 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G ++W+ WQ+NGWKT+DKK VKN +LW V+A+A+H+V W+
Sbjct: 64 PCRVTLYTDSKYVMDGITKWVFGWQKNGWKTADKKPVKNAELWQLLVKAAARHQVTWQWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D++A AA SF+
Sbjct: 124 KGHAGHPENERADQLACAAAESFRK 148
>gi|254448795|ref|ZP_05062252.1| RNase H [gamma proteobacterium HTCC5015]
gi|198261636|gb|EDY85924.1| RNase H [gamma proteobacterium HTCC5015]
Length = 145
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 105/144 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGVLL Y G EK + GGE ETTNNRMELMAAI+ L ALK
Sbjct: 1 MTDVTLYTDGACKGNPGPGGWGVLLIYGGHEKELCGGEAETTNNRMELMAAIEGLNALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LYTDS+YV +G +QW+ W++NGW+T+ KK VKN DLW A +H+++ +W+
Sbjct: 61 SCRVALYTDSNYVRQGMTQWLANWKKNGWRTAAKKPVKNDDLWQALDAACERHEIEWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+G+ NE+ D +A +S +
Sbjct: 121 KGHSGDPGNERADELANRGVLSAQ 144
>gi|269140167|ref|YP_003296868.1| ribonuclease H [Edwardsiella tarda EIB202]
gi|267985828|gb|ACY85657.1| ribonuclease H [Edwardsiella tarda EIB202]
gi|304560000|gb|ADM42664.1| Ribonuclease HI [Edwardsiella tarda FL6-60]
Length = 154
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/140 (56%), Positives = 105/140 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+ EK +S G + TTNNRMELMAAI AL L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYRLTTNNRMELMAAIVALETLTS 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L++DS YV +G +QWI W++ GWKT+DKK VKN+DLW + +A H+V+ WI
Sbjct: 62 ACQVTLFSDSQYVRQGITQWIHGWKRRGWKTADKKPVKNVDLWQRLDQAIGPHQVEWIWI 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR+AA
Sbjct: 122 KGHAGHPENERCDELARSAA 141
>gi|150395753|ref|YP_001326220.1| ribonuclease H [Sinorhizobium medicae WSM419]
gi|187611398|sp|A6U6V5|RNH_SINMW RecName: Full=Ribonuclease H; Short=RNase H
gi|150027268|gb|ABR59385.1| Ribonuclease H [Sinorhizobium medicae WSM419]
Length = 153
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 85/145 (58%), Positives = 104/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGACSGNPGPGGWG +LRY EK +SGGE ETTNNRMEL+AAI AL AL+
Sbjct: 1 MKHVDIYTDGACSGNPGPGGWGAVLRYGDVEKEMSGGEAETTNNRMELLAAISALNALRQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV G S+WI W++NGWKT D+K VKN +LW A +H V +W+
Sbjct: 61 PCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDAARDRHNVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARKGMEPFKR 145
>gi|323171001|gb|EFZ56650.1| ribonuclease H [Escherichia coli LT-68]
Length = 155
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA+S
Sbjct: 122 KGHAGHPENERCDELARAAAMS 143
>gi|238762659|ref|ZP_04623628.1| Ribonuclease H [Yersinia kristensenii ATCC 33638]
gi|238698964|gb|EEP91712.1| Ribonuclease H [Yersinia kristensenii ATCC 33638]
Length = 154
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYFLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H + W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHVIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELAREGANS 143
>gi|167902186|ref|ZP_02489391.1| RNase H [Burkholderia pseudomallei NCTC 13177]
Length = 148
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 81/144 (56%), Positives = 98/144 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL ALK
Sbjct: 2 TLQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEPGTTNNRMELTAVIAALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH V+ W
Sbjct: 62 RPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDVEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGHAG+ ENE+ D +A S
Sbjct: 122 VKGHAGHPENERADALANRGVESL 145
>gi|27376427|ref|NP_767956.1| ribonuclease H [Bradyrhizobium japonicum USDA 110]
gi|81841937|sp|Q89UU3|RNH_BRAJA RecName: Full=Ribonuclease H; Short=RNase H
gi|27349567|dbj|BAC46581.1| ribonuclease H [Bradyrhizobium japonicum USDA 110]
Length = 154
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 108/143 (75%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGWG +L++ KEK ++GGE+ TTNN+MELMAAI AL ALK PC
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHTTNNQMELMAAISALEALKKPCT 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV +G + WI W++NGW+T+DKK VKN++LW + A H+V +W+KGH
Sbjct: 67 VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHQVRWHWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
AG+ ENE+ D++AR+ V + +
Sbjct: 127 AGHPENERADQLARDGIVKARLQ 149
>gi|326796076|ref|YP_004313896.1| ribonuclease H [Marinomonas mediterranea MMB-1]
gi|326546840|gb|ADZ92060.1| Ribonuclease H [Marinomonas mediterranea MMB-1]
Length = 147
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 94/146 (64%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGAC GNPG GGWG L + EK + GGE +TTNNRMELM AI+ L ALK
Sbjct: 1 MKEVTIYTDGACKGNPGIGGWGAWLTFGQHEKKMCGGEHDTTNNRMELMGAIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LYTDSSYV KG +QW+ W++ GWKT+ K+ VKN DLW +H V W+
Sbjct: 61 SCVVTLYTDSSYVQKGITQWLAGWKKKGWKTASKQPVKNQDLWQSLDSECQRHDVTWKWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG + NE D++A + K
Sbjct: 121 KGHAGIEGNEIADQLANQGIDELRAK 146
>gi|154246299|ref|YP_001417257.1| ribonuclease H [Xanthobacter autotrophicus Py2]
gi|154160384|gb|ABS67600.1| Ribonuclease H [Xanthobacter autotrophicus Py2]
Length = 151
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/146 (56%), Positives = 106/146 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV +TDGACSGNPGPGGWG +LR+ EK +SGGE TTNNRMELM AI AL ALK
Sbjct: 1 MKEVAVFTDGACSGNPGPGGWGAILRFGAHEKELSGGEALTTNNRMELMGAIAALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L+TDS+Y+ G ++W+ W++NGW+T+DKK VKN DLW + A +H + +W+
Sbjct: 61 PCTVDLHTDSNYLKDGVTKWMHGWKRNGWRTADKKPVKNQDLWERLDAALKRHTLRWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR FK K
Sbjct: 121 KGHAGHAENERADELARAGMAPFKLK 146
>gi|53718981|ref|YP_107967.1| ribonuclease HI [Burkholderia pseudomallei K96243]
gi|53725132|ref|YP_102526.1| ribonuclease HI [Burkholderia mallei ATCC 23344]
gi|67639723|ref|ZP_00438560.1| ribonuclease H [Burkholderia mallei GB8 horse 4]
gi|121600227|ref|YP_992608.1| ribonuclease HI [Burkholderia mallei SAVP1]
gi|124386245|ref|YP_001026591.1| ribonuclease HI [Burkholderia mallei NCTC 10229]
gi|126438580|ref|YP_001058509.1| RNase H [Burkholderia pseudomallei 668]
gi|126450488|ref|YP_001080125.1| RNase H [Burkholderia mallei NCTC 10247]
gi|126454731|ref|YP_001065769.1| RNase H [Burkholderia pseudomallei 1106a]
gi|134282890|ref|ZP_01769593.1| RNase H [Burkholderia pseudomallei 305]
gi|167002806|ref|ZP_02268596.1| ribonuclease H [Burkholderia mallei PRL-20]
gi|167719046|ref|ZP_02402282.1| RNase H [Burkholderia pseudomallei DM98]
gi|167738047|ref|ZP_02410821.1| RNase H [Burkholderia pseudomallei 14]
gi|167815231|ref|ZP_02446911.1| RNase H [Burkholderia pseudomallei 91]
gi|167823639|ref|ZP_02455110.1| RNase H [Burkholderia pseudomallei 9]
gi|167845183|ref|ZP_02470691.1| RNase H [Burkholderia pseudomallei B7210]
gi|167893734|ref|ZP_02481136.1| RNase H [Burkholderia pseudomallei 7894]
gi|167910427|ref|ZP_02497518.1| RNase H [Burkholderia pseudomallei 112]
gi|167918452|ref|ZP_02505543.1| RNase H [Burkholderia pseudomallei BCC215]
gi|217423543|ref|ZP_03455044.1| ribonuclease H [Burkholderia pseudomallei 576]
gi|226196141|ref|ZP_03791726.1| ribonuclease H [Burkholderia pseudomallei Pakistan 9]
gi|237811762|ref|YP_002896213.1| ribonuclease HI [Burkholderia pseudomallei MSHR346]
gi|242314868|ref|ZP_04813884.1| ribonuclease H [Burkholderia pseudomallei 1106b]
gi|254178483|ref|ZP_04885138.1| RNase H [Burkholderia mallei ATCC 10399]
gi|254180216|ref|ZP_04886815.1| RNase H [Burkholderia pseudomallei 1655]
gi|254188363|ref|ZP_04894874.1| RNase H [Burkholderia pseudomallei Pasteur 52237]
gi|254198405|ref|ZP_04904827.1| RNase H [Burkholderia pseudomallei S13]
gi|254199437|ref|ZP_04905803.1| RNase H [Burkholderia mallei FMH]
gi|254205750|ref|ZP_04912102.1| RNase H [Burkholderia mallei JHU]
gi|254258023|ref|ZP_04949077.1| ribonuclease H [Burkholderia pseudomallei 1710a]
gi|254298052|ref|ZP_04965505.1| RNase H [Burkholderia pseudomallei 406e]
gi|254358850|ref|ZP_04975123.1| RNase H [Burkholderia mallei 2002721280]
gi|52209395|emb|CAH35340.1| ribonuclease HI [Burkholderia pseudomallei K96243]
gi|52428555|gb|AAU49148.1| ribonuclease HI [Burkholderia mallei ATCC 23344]
gi|121229037|gb|ABM51555.1| ribonuclease HI [Burkholderia mallei SAVP1]
gi|124294265|gb|ABN03534.1| ribonuclease HI [Burkholderia mallei NCTC 10229]
gi|126218073|gb|ABN81579.1| ribonuclease H [Burkholderia pseudomallei 668]
gi|126228373|gb|ABN91913.1| RNase H [Burkholderia pseudomallei 1106a]
gi|126243358|gb|ABO06451.1| ribonuclease H [Burkholderia mallei NCTC 10247]
gi|134245976|gb|EBA46067.1| RNase H [Burkholderia pseudomallei 305]
gi|147749033|gb|EDK56107.1| RNase H [Burkholderia mallei FMH]
gi|147753193|gb|EDK60258.1| RNase H [Burkholderia mallei JHU]
gi|148027977|gb|EDK85998.1| RNase H [Burkholderia mallei 2002721280]
gi|157806872|gb|EDO84042.1| RNase H [Burkholderia pseudomallei 406e]
gi|157936042|gb|EDO91712.1| RNase H [Burkholderia pseudomallei Pasteur 52237]
gi|160699522|gb|EDP89492.1| RNase H [Burkholderia mallei ATCC 10399]
gi|169655146|gb|EDS87839.1| RNase H [Burkholderia pseudomallei S13]
gi|184210756|gb|EDU07799.1| RNase H [Burkholderia pseudomallei 1655]
gi|217393401|gb|EEC33422.1| ribonuclease H [Burkholderia pseudomallei 576]
gi|225931727|gb|EEH27729.1| ribonuclease H [Burkholderia pseudomallei Pakistan 9]
gi|237505053|gb|ACQ97371.1| ribonuclease HI [Burkholderia pseudomallei MSHR346]
gi|238520321|gb|EEP83782.1| ribonuclease H [Burkholderia mallei GB8 horse 4]
gi|242138107|gb|EES24509.1| ribonuclease H [Burkholderia pseudomallei 1106b]
gi|243061565|gb|EES43751.1| ribonuclease H [Burkholderia mallei PRL-20]
gi|254216712|gb|EET06096.1| ribonuclease H [Burkholderia pseudomallei 1710a]
Length = 148
Score = 141 bits (354), Expect = 3e-32, Method: Composition-based stats.
Identities = 81/144 (56%), Positives = 98/144 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL ALK
Sbjct: 2 TLQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEPGTTNNRMELTAVIAALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH V+ W
Sbjct: 62 RPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDVEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGHAG+ ENE+ D +A S
Sbjct: 122 VKGHAGHPENERADALANRGVESL 145
>gi|254480513|ref|ZP_05093760.1| ribonuclease HI [marine gamma proteobacterium HTCC2148]
gi|214039096|gb|EEB79756.1| ribonuclease HI [marine gamma proteobacterium HTCC2148]
Length = 144
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 103/143 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDGAC GNPGPGGWG LLR++GKEK + GGE +TTNNRMEL AAI+ L ALK
Sbjct: 1 MKNIEIFTDGACRGNPGPGGWGALLRFQGKEKSLYGGEAQTTNNRMELQAAIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS YV G + W+ W++ GWKTS+KK VKN+DLW E + +H+VD +W+
Sbjct: 61 PCVVALTTDSIYVKNGITSWLPGWKKKGWKTSNKKPVKNVDLWQSLDEQNQRHQVDWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G++ENE D++A
Sbjct: 121 KGHSGHRENEIADQLANRGIDEL 143
>gi|332141112|ref|YP_004426850.1| ribonuclease H [Alteromonas macleodii str. 'Deep ecotype']
gi|327551134|gb|AEA97852.1| ribonuclease H [Alteromonas macleodii str. 'Deep ecotype']
Length = 156
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 79/146 (54%), Positives = 105/146 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +H YTDG+C GNPGPGG+G +L YK +K +S G TTNNRMEL+A I+AL +L P
Sbjct: 4 KTIHIYTDGSCLGNPGPGGYGAVLIYKQHKKELSDGFAHTTNNRMELLAPIEALNSLTEP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV G +QWI W++NGW+TSDKK VKN DLW + EA +H+V+ +W+K
Sbjct: 64 CAVELTTDSQYVKNGINQWIHNWRKNGWRTSDKKPVKNADLWQRLDEAVKKHQVNWHWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GH+G+ ENE+ D +AR AA + +I
Sbjct: 124 GHSGHPENERCDELARGAAEAKPTQI 149
>gi|190573030|ref|YP_001970875.1| ribonuclease H [Stenotrophomonas maltophilia K279a]
gi|190010952|emb|CAQ44561.1| putative ribonuclease H [Stenotrophomonas maltophilia K279a]
Length = 150
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 104/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRYKG E+ +SGGE TTNNRMELMAAI L L
Sbjct: 1 MKTIEIHTDGSCLGNPGPGGWAALLRYKGHERELSGGEAHTTNNRMELMAAISGLETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC ++LYTDS YV +G +QW+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCNIVLYTDSQYVRQGLTQWMPGWIRKNWKTAGGDPVKNRELWERLHAATLRHQIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ +NE+VD +ARNAA+ ++
Sbjct: 121 KGHSGDPDNERVDTLARNAAIQIRD 145
>gi|318606883|emb|CBY28381.1| ribonuclease HI [Yersinia enterocolitica subsp. palearctica Y11]
Length = 154
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYFLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ WKT+D+K V+N+DLW + A H++ W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRDWKTTDRKPVRNVDLWQRLDLAIQTHQIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR +A S
Sbjct: 123 GHAGHPENERCDELARESANS 143
>gi|254522256|ref|ZP_05134311.1| ribonuclease HI [Stenotrophomonas sp. SKA14]
gi|219719847|gb|EED38372.1| ribonuclease HI [Stenotrophomonas sp. SKA14]
Length = 150
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 104/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRYKG E+ +SGGE TTNNRMELMAAI L L
Sbjct: 1 MKTIEIHTDGSCLGNPGPGGWAALLRYKGHERELSGGEAHTTNNRMELMAAISGLETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC ++LYTDS YV +G +QW+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCNIVLYTDSQYVRQGLTQWMPGWIRKNWKTAGGDPVKNRELWERLHAATLRHQIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ +NE+VD +ARNAA+ ++
Sbjct: 121 KGHSGDPDNERVDTLARNAAIQVRD 145
>gi|327392833|dbj|BAK10255.1| ribonuclease HI RnhA [Pantoea ananatis AJ13355]
Length = 155
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 103/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY EK S G + TTNNRMELMAAI +L AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYGQHEKTFSAGYRLTTNNRMELMAAIVSLEALTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A + H++ W+K
Sbjct: 63 CDVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDIALSTHQIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR+AA +
Sbjct: 123 GHAGHPENERCDELARSAANN 143
>gi|268592016|ref|ZP_06126237.1| ribonuclease HI [Providencia rettgeri DSM 1131]
gi|291312408|gb|EFE52861.1| ribonuclease HI [Providencia rettgeri DSM 1131]
Length = 156
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRY+ EK +S G TTNNRMEL+AAIKAL +L P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVLRYQQHEKTLSEGYFLTTNNRMELLAAIKALESLTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C ++L TDS YV +G +QWI W++ W+ +DK V N+DLW + +A +H +D W+K
Sbjct: 63 CDIILTTDSQYVRQGITQWIHGWKRKQWRKADKSPVVNVDLWKRLDDAIQRHTIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENEK D +AR AA +
Sbjct: 123 GHAGHPENEKCDELARAAASA 143
>gi|251788640|ref|YP_003003361.1| Ribonuclease H [Dickeya zeae Ech1591]
gi|247537261|gb|ACT05882.1| Ribonuclease H [Dickeya zeae Ech1591]
Length = 154
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 81/141 (57%), Positives = 102/141 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+GVLLRYK EK +S G + TTNNRMELMAAI AL +L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGVLLRYKQHEKTLSAGYRLTTNNRMELMAAIVALESLTT 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS YV +G + WI W++ GWKT++KK VKNIDLW + A +H + W+
Sbjct: 62 PCDVTLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNIDLWQRLDSAIQRHTLHWQWV 121
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARQAAN 142
>gi|75676871|ref|YP_319292.1| ribonuclease H [Nitrobacter winogradskyi Nb-255]
gi|123731975|sp|Q3SP51|RNH_NITWN RecName: Full=Ribonuclease H; Short=RNase H
gi|74421741|gb|ABA05940.1| RNase HI [Nitrobacter winogradskyi Nb-255]
Length = 154
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 103/149 (69%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S L V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MNSPALPHVTIFTDGACSGNPGPGGWGAILRFGDIEKELKGGEPHTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK P V L TDS YV +G + WI W++NGW+T+D+K VKN+DLW + A H+V
Sbjct: 61 EALKRPALVDLTTDSQYVRQGITAWIHGWKRNGWRTADRKPVKNVDLWQRLDAALQPHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+WIKGH G+ ENE+ D++AR K
Sbjct: 121 RWHWIKGHDGHSENERADQLAREGVAMAK 149
>gi|117620723|ref|YP_856105.1| ribonuclease H [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|189043681|sp|A0KIK4|RNH_AERHH RecName: Full=Ribonuclease H; Short=RNase H
gi|117562130|gb|ABK39078.1| RNase H [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 154
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 99/144 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+G ++ Y K ++GG + TTNNRMELMAAI L L
Sbjct: 2 LKKIDLYTDGSCLGNPGPGGYGAVMVYGKHRKELAGGFRLTTNNRMELMAAIMGLRTLNE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV +G +QWI W++ GW T+ ++ VKN+DLW A+H+++ W+
Sbjct: 62 PCQVRLTTDSQYVRQGITQWIIGWKKKGWVTASRQPVKNVDLWQALDAEVARHQIEWLWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+G+ ENE+ D +AR AA +
Sbjct: 122 KGHSGHPENERCDELAREAASGKQ 145
>gi|89094532|ref|ZP_01167471.1| ribonuclease HI [Oceanospirillum sp. MED92]
gi|89081268|gb|EAR60501.1| ribonuclease HI [Oceanospirillum sp. MED92]
Length = 146
Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGWG +LRY EK + GGE +TTNNRMELMAAI AL L
Sbjct: 1 MKTVEIFTDGACKGNPGPGGWGAVLRYGDAEKQMHGGENDTTNNRMELMAAIVALETLNR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS YV +G ++WI+ W++ GWK S KK VKN DLW + A HK+D W+
Sbjct: 61 PCEVILTTDSQYVRQGITEWIEGWKRKGWKNSQKKPVKNADLWQRLDAARQPHKIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ ENE D++A
Sbjct: 121 KGHSGHPENELADQLANKGVEEL 143
>gi|153007936|ref|YP_001369151.1| ribonuclease H [Ochrobactrum anthropi ATCC 49188]
gi|187611381|sp|A6WWG8|RNH_OCHA4 RecName: Full=Ribonuclease H; Short=RNase H
gi|151559824|gb|ABS13322.1| ribonuclease H [Ochrobactrum anthropi ATCC 49188]
Length = 154
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 86/144 (59%), Positives = 106/144 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + AYTDGACSGNPGPGGWG +LR+ K + GGE +TTNNRMELMAAI AL+ALK
Sbjct: 1 MKRIEAYTDGACSGNPGPGGWGAILRWNDNVKELKGGEADTTNNRMELMAAISALSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G S WI+ W++NGWKT+ KK VKN +LW EA HKV+ +W+
Sbjct: 61 PCEVDLYTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKPHKVNWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELAREGMEPFK 144
>gi|307132180|ref|YP_003884196.1| ribonuclease HI [Dickeya dadantii 3937]
gi|306529709|gb|ADM99639.1| ribonuclease HI [Dickeya dadantii 3937]
Length = 154
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 102/142 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSAGYRLTTNNRMELMAAIVALETLTT 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V + TDS YV +G + WI W++ GWKT++KK VKN+DLW + +A +H + W+
Sbjct: 62 PCDVTISTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNVDLWQRLDQAIQRHTLHWQWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 122 KGHAGHPENERCDELARQAASA 143
>gi|283834500|ref|ZP_06354241.1| ribonuclease HI [Citrobacter youngae ATCC 29220]
gi|291070050|gb|EFE08159.1| ribonuclease HI [Citrobacter youngae ATCC 29220]
Length = 155
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A H++ W+
Sbjct: 62 QCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA+S
Sbjct: 122 KGHAGHPENERCDELARAAAMS 143
>gi|121998364|ref|YP_001003151.1| ribonuclease H [Halorhodospira halophila SL1]
gi|187611375|sp|A1WXD7|RNH_HALHL RecName: Full=Ribonuclease H; Short=RNase H
gi|121589769|gb|ABM62349.1| RNase HI [Halorhodospira halophila SL1]
Length = 149
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 102/140 (72%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V A+TDGAC GNPGPGGWGVLLRY E+ + GGE ETTNNRMEL AAI+AL AL PC+
Sbjct: 8 VEAFTDGACRGNPGPGGWGVLLRYGEHERELYGGEPETTNNRMELTAAIRALEALDRPCR 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+L TDS YV +G ++W++ W++ GW+T+ +K V N DLW + E +A H+VD +W++GH
Sbjct: 68 VVLTTDSQYVRRGITEWLEGWKRRGWRTASRKPVLNQDLWQRLDELAAYHQVDWHWVRGH 127
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A
Sbjct: 128 AGHAENERADALANQGIDEL 147
>gi|94496958|ref|ZP_01303532.1| ribonuclease H [Sphingomonas sp. SKA58]
gi|94423634|gb|EAT08661.1| ribonuclease H [Sphingomonas sp. SKA58]
Length = 148
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 108/147 (73%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L +V +TDGAC GNPGPGGWG +LR+ EK ISGGE +TTNNRME+ AA++AL L
Sbjct: 2 SDLPQVEIFTDGACKGNPGPGGWGAVLRFGDTEKEISGGEAQTTNNRMEMTAALEALNLL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K PC V LYTDS YV G ++W+ WQ+ GW+T+D K VKN+++W V+A+A+H++
Sbjct: 62 KKPCAVTLYTDSKYVMDGITKWVFGWQKKGWRTADNKPVKNVEIWQNLVKAAARHQMTWK 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D++A AA +F+
Sbjct: 122 WVKGHAGHPENERADQLASAAAETFRR 148
>gi|238794444|ref|ZP_04638054.1| Ribonuclease H [Yersinia intermedia ATCC 29909]
gi|238726239|gb|EEQ17783.1| Ribonuclease H [Yersinia intermedia ATCC 29909]
Length = 154
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G ++RYK EK S G + TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAIMRYKQHEKTFSAGYRLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H V W+K
Sbjct: 63 CQVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQGHTVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA S
Sbjct: 123 GHAGHPENERCDELARLAANS 143
>gi|238759159|ref|ZP_04620327.1| Ribonuclease H [Yersinia aldovae ATCC 35236]
gi|238702575|gb|EEP95124.1| Ribonuclease H [Yersinia aldovae ATCC 35236]
Length = 154
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK+ S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKMFSAGYYLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V + TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H + W+K
Sbjct: 63 CEVTISTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNMDLWQRLDLAIQTHTIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA S
Sbjct: 123 GHAGHPENERCDELARLAANS 143
>gi|109898680|ref|YP_661935.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
gi|123064526|sp|Q15TA7|RNH_PSEA6 RecName: Full=Ribonuclease H; Short=RNase H
gi|109700961|gb|ABG40881.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
Length = 153
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 99/140 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C GNPGPGG+G +L + K +S G TTNNRMEL+A I+AL +L
Sbjct: 1 MKHIEIYTDGSCLGNPGPGGYGAVLLFNQHSKELSQGFVHTTNNRMELLATIEALASLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV L TDS YV G +QWIK W++NGW+TSDKK VKN+DLW + E +H V +W+
Sbjct: 61 TCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVGRHDVKWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+G+ NE+ D +AR+AA
Sbjct: 121 KGHSGHPMNERCDVLARDAA 140
>gi|238755083|ref|ZP_04616430.1| Ribonuclease H [Yersinia ruckeri ATCC 29473]
gi|238706643|gb|EEP99013.1| Ribonuclease H [Yersinia ruckeri ATCC 29473]
Length = 154
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRME+MAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYRLTTNNRMEMMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C++ L TDS YV +G +QWI W++ GWKTSD+K V+N+DLW + A H V W+K
Sbjct: 63 CEITLSTDSQYVRQGITQWIHNWKKRGWKTSDRKPVRNVDLWQRLDAAILGHNVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR+AA +
Sbjct: 123 GHAGHPENERCDVLARDAANA 143
>gi|157833638|pdb|1RBR|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 83/142 (58%), Positives = 108/142 (76%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 PCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|294637714|ref|ZP_06715991.1| ribonuclease HI [Edwardsiella tarda ATCC 23685]
gi|291089144|gb|EFE21705.1| ribonuclease HI [Edwardsiella tarda ATCC 23685]
Length = 156
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+ EK +S G TTNNRMELMAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYHLTTNNRMELMAAIVALEALTS 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LY+DS YV +G +QWI W++ GWKT+DKK VKN+DLW + +A H+V+ W+
Sbjct: 62 DCQVKLYSDSQYVRQGITQWIHGWKRRGWKTADKKPVKNVDLWQRLDQAIQAHQVEWIWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARQAAGK 143
>gi|156935272|ref|YP_001439188.1| hypothetical protein ESA_03125 [Cronobacter sakazakii ATCC BAA-894]
gi|189043691|sp|A7MI34|RNH_ENTS8 RecName: Full=Ribonuclease H; Short=RNase H
gi|156533526|gb|ABU78352.1| hypothetical protein ESA_03125 [Cronobacter sakazakii ATCC BAA-894]
Length = 158
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK E+ S G + TTNNRMELMAAI +L AL+
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEALREH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A +QH++ W+K
Sbjct: 63 CIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA++
Sbjct: 123 GHAGHPENERCDELARAAAMA 143
>gi|258450505|gb|ACV72182.1| ribonuclease H [uncultured organism]
Length = 148
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 101/139 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V A+TDGAC GNPGPGGWGV+LR K +SGGE TTNNRMEL AAI+AL ALK
Sbjct: 1 MKAVEAFTDGACRGNPGPGGWGVVLRAGEHVKELSGGEPNTTNNRMELKAAIEALAALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G ++W+ W+ GW+T+D+K VKN DLW + +A+H+V +W+
Sbjct: 61 PCRVALYTDSVYVRSGITEWLPAWRARGWRTADRKPVKNQDLWQALADQAARHEVAWHWV 120
Query: 126 KGHAGNQENEKVDRIARNA 144
KGH+G+ ENE+ D +A
Sbjct: 121 KGHSGHPENERADELANIG 139
>gi|88800080|ref|ZP_01115650.1| ribonuclease H [Reinekea sp. MED297]
gi|88777206|gb|EAR08411.1| ribonuclease H [Reinekea sp. MED297]
Length = 146
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 98/146 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDG C GNPGPGGWG +L Y EK + G E ETTNNRMEL+AAI+ L ALK
Sbjct: 1 MKTVTLYTDGGCRGNPGPGGWGAVLIYGDHEKKLKGSEPETTNNRMELLAAIEGLEALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LYTDS YV +G +QWI W++NGWKT+ KK VKN DLW + ++H+V+ +W+
Sbjct: 61 AVTVDLYTDSKYVQQGITQWIHNWKKNGWKTAGKKPVKNQDLWQRLDSLMSKHEVNWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG++ NE D +A A +
Sbjct: 121 KGHAGHKYNEIADELANQAMDEMVRQ 146
>gi|145299713|ref|YP_001142554.1| ribonuclease H [Aeromonas salmonicida subsp. salmonicida A449]
gi|189043682|sp|A4SPI4|RNH_AERS4 RecName: Full=Ribonuclease H; Short=RNase H
gi|142852485|gb|ABO90806.1| ribonuclease H [Aeromonas salmonicida subsp. salmonicida A449]
Length = 154
Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats.
Identities = 73/140 (52%), Positives = 99/140 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ + YTDG+C GNPGPGG+G +L Y K ISGG + TTNNRMELMAAI L L
Sbjct: 2 LKHIDLYTDGSCLGNPGPGGYGAVLVYGDHRKEISGGFRLTTNNRMELMAAIMGLRTLNA 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GW TS+++ VKN+DLW + A+H+++ W+
Sbjct: 62 ACQVRLTTDSQYVRQGITQWIIGWKKKGWMTSNRQPVKNVDLWKELDAEVARHQIEWLWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+G+ ENE+ D +AR+AA
Sbjct: 122 KGHSGHPENERCDELARDAA 141
>gi|317047020|ref|YP_004114668.1| ribonuclease H [Pantoea sp. At-9b]
gi|316948637|gb|ADU68112.1| Ribonuclease H [Pantoea sp. At-9b]
Length = 155
Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 103/139 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY+ EK S G + TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H++ W+K
Sbjct: 63 CEVVISTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLALSSHQIVWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE+ D +AR+AA
Sbjct: 123 GHAGHPENERCDELARSAA 141
>gi|237730198|ref|ZP_04560679.1| ribonuclease H [Citrobacter sp. 30_2]
gi|226905737|gb|EEH91655.1| ribonuclease H [Citrobacter sp. 30_2]
Length = 155
Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A H++ W+
Sbjct: 62 QCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA+S
Sbjct: 122 KGHAGHPENERCDELARTAAMS 143
>gi|50122262|ref|YP_051429.1| ribonuclease H [Pectobacterium atrosepticum SCRI1043]
gi|81827039|sp|Q6D1V7|RNH_ERWCT RecName: Full=Ribonuclease H; Short=RNase H
gi|49612788|emb|CAG76238.1| ribonuclease HI [Pectobacterium atrosepticum SCRI1043]
Length = 154
Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAVLRYKQHEKALSAGYRLTTNNRMELMAAIAALETLTTD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C ++L TDS YV +G + WI W++ WKT+DKK VKN+DLW + A +H V W+K
Sbjct: 63 CDIVLSTDSQYVRQGITSWIHNWKKRSWKTADKKPVKNVDLWKRLDTAIQRHSVRWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAASA 143
>gi|167630849|ref|YP_001681348.1| ribonuclease h [Heliobacterium modesticaldum Ice1]
gi|167593589|gb|ABZ85337.1| ribonuclease h [Heliobacterium modesticaldum Ice1]
Length = 157
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M +EV YTDGAC GNPGPGG+G +L Y K +S G ++TTNNRME++AAIKAL
Sbjct: 1 MTQAKRKEVTIYTDGACLGNPGPGGYGAVLIYGEHRKELSEGFRDTTNNRMEMLAAIKAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
ALK PC+V+LY+DS Y+ +Q ++W+ NGW + K N+DLW + ++ +H+
Sbjct: 61 EALKEPCQVVLYSDSRYLVDAVTQGWARRWKANGWMRNKKDPALNVDLWERLLQLLERHQ 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V+ W+KGHAGN ENE+ D++A AA
Sbjct: 121 VEFRWVKGHAGNPENERCDKLATAAA 146
>gi|157159675|ref|YP_001456993.1| ribonuclease H [Escherichia coli HS]
gi|193063213|ref|ZP_03044304.1| ribonuclease H [Escherichia coli E22]
gi|194427582|ref|ZP_03060130.1| ribonuclease H [Escherichia coli B171]
gi|218693676|ref|YP_002401343.1| ribonuclease H [Escherichia coli 55989]
gi|260842440|ref|YP_003220218.1| ribonuclease HI [Escherichia coli O103:H2 str. 12009]
gi|189043688|sp|A7ZWF6|RNH_ECOHS RecName: Full=Ribonuclease H; Short=RNase H
gi|254808025|sp|B7LHC0|RNH_ECO55 RecName: Full=Ribonuclease H; Short=RNase H
gi|157065355|gb|ABV04610.1| ribonuclease H [Escherichia coli HS]
gi|192931121|gb|EDV83724.1| ribonuclease H [Escherichia coli E22]
gi|194414352|gb|EDX30626.1| ribonuclease H [Escherichia coli B171]
gi|218350408|emb|CAU96093.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
55989]
gi|257757587|dbj|BAI29084.1| ribonuclease HI [Escherichia coli O103:H2 str. 12009]
gi|320201191|gb|EFW75774.1| Ribonuclease HI [Escherichia coli EC4100B]
gi|323160257|gb|EFZ46214.1| ribonuclease H [Escherichia coli E128010]
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHSWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|167836206|ref|ZP_02463089.1| RNase H [Burkholderia thailandensis MSMB43]
Length = 148
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 81/144 (56%), Positives = 98/144 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL ALK
Sbjct: 2 TLQTIDIYTDGACKGNPGPGGWGALLRYGTQEKELFGGEAGTTNNRMELTAVIAALAALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH V+ W
Sbjct: 62 RPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDVEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGHAG+ ENE+ D +A S
Sbjct: 122 VKGHAGHPENERADALANRGVESL 145
>gi|308198440|pdb|3AA3|A Chain A, A52l E. Coli Rnase Hi
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMA I AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMALIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157831759|pdb|1LAV|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS Y+ +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYLRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157833712|pdb|1RNH|A Chain A, Structure Of Ribonuclease H Phased At 2 Angstroms
Resolution By Mad Analysis Of The Selenomethionyl
Protein
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNR EL AAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRXELXAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 122 KGHAGHPENERCDELARAAAXN 143
>gi|308198441|pdb|3AA4|A Chain A, A52v E.Coli Rnase Hi
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMA I AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAVIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|253689505|ref|YP_003018695.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259494080|sp|C6DC65|RNH_PECCP RecName: Full=Ribonuclease H; Short=RNase H
gi|251756083|gb|ACT14159.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 154
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 79/139 (56%), Positives = 99/139 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGALLRYKQHEKPLSAGYRLTTNNRMELMAAIAALETLTTE 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A +H V W+K
Sbjct: 63 CDVVLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAIQRHSVRWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE+ D +AR AA
Sbjct: 123 GHAGHPENERCDELARAAA 141
>gi|330816256|ref|YP_004359961.1| RNase H [Burkholderia gladioli BSR3]
gi|327368649|gb|AEA60005.1| RNase H [Burkholderia gladioli BSR3]
Length = 149
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 77/147 (52%), Positives = 99/147 (67%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMEL+A IKAL ALK
Sbjct: 2 TLQSIDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEPGTTNNRMELLAVIKALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + E H+++ W
Sbjct: 62 RRCHVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDELVVGHEIEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHAG+ ENE+ D +A S +
Sbjct: 122 VKGHAGHAENERADALANRGVESLSQQ 148
>gi|304311304|ref|YP_003810902.1| Ribonuclease H1 [gamma proteobacterium HdN1]
gi|301797037|emb|CBL45250.1| Ribonuclease H1 [gamma proteobacterium HdN1]
Length = 153
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDGAC GNPGPGGWG +LR EK ++G E+ TTNNRMELMAAI+AL ALK
Sbjct: 1 MDSVEIFTDGACKGNPGPGGWGAVLRAGRHEKSLNGYEQHTTNNRMELMAAIEALKALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV + TDS Y+ KG ++WI W++ WKT+ + VKN DLW + +H ++ W+
Sbjct: 61 PCKVRITTDSQYLRKGITEWIHGWKRKSWKTASGQPVKNDDLWRSLDAETQRHLIEWDWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D++A +A +
Sbjct: 121 KGHAGHPENERADQLANDAIAA 142
>gi|110640429|ref|YP_668157.1| ribonuclease H [Escherichia coli 536]
gi|191171436|ref|ZP_03032985.1| ribonuclease H [Escherichia coli F11]
gi|215485370|ref|YP_002327801.1| ribonuclease H [Escherichia coli O127:H6 str. E2348/69]
gi|306813366|ref|ZP_07447559.1| ribonuclease H [Escherichia coli NC101]
gi|312964724|ref|ZP_07778975.1| ribonuclease H [Escherichia coli 2362-75]
gi|123049482|sp|Q0TLC3|RNH_ECOL5 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808024|sp|B7UJB0|RNH_ECO27 RecName: Full=Ribonuclease H; Short=RNase H
gi|110342021|gb|ABG68258.1| ribonuclease HI [Escherichia coli 536]
gi|190908370|gb|EDV67960.1| ribonuclease H [Escherichia coli F11]
gi|215263442|emb|CAS07762.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O127:H6 str. E2348/69]
gi|222032039|emb|CAP74778.1| ribonuclease HI [Escherichia coli LF82]
gi|305854129|gb|EFM54568.1| ribonuclease H [Escherichia coli NC101]
gi|312290745|gb|EFR18623.1| ribonuclease H [Escherichia coli 2362-75]
gi|312944817|gb|ADR25644.1| ribonuclease H [Escherichia coli O83:H1 str. NRG 857C]
gi|320197299|gb|EFW71915.1| Ribonuclease HI [Escherichia coli WV_060327]
gi|323191553|gb|EFZ76813.1| ribonuclease H [Escherichia coli RN587/1]
Length = 155
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|149186248|ref|ZP_01864562.1| ribonuclease H [Erythrobacter sp. SD-21]
gi|148830279|gb|EDL48716.1| ribonuclease H [Erythrobacter sp. SD-21]
Length = 149
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 108/143 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDGAC GNPGPGGWG LLR EK +SGGE +TTNNRME+ AAI+AL+AL
Sbjct: 1 MKKVEIFTDGACKGNPGPGGWGALLRMGRHEKELSGGEPDTTNNRMEMTAAIRALSALIE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS Y+ G ++W+ W++ GW + KK V+N DLW + +E +A+HKVD +W+
Sbjct: 61 PCEVALHTDSKYLIDGITKWVHGWKKRGWVNASKKPVRNADLWHELIELTARHKVDWFWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ EN++VD++A +AA
Sbjct: 121 KGHSGHPENDRVDQLASDAAERI 143
>gi|329296921|ref|ZP_08254257.1| RnhA [Plautia stali symbiont]
Length = 155
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 103/139 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY+ EK+ S G + TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRQHEKLFSAGYRLTTNNRMELMAAIVALEALTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT++KK VKN+DLW + A + H++ W+K
Sbjct: 63 CDVVLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSTHQIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE+ D +AR+AA
Sbjct: 123 GHAGHPENERCDELARSAA 141
>gi|225023996|ref|ZP_03713188.1| hypothetical protein EIKCOROL_00863 [Eikenella corrodens ATCC
23834]
gi|224943021|gb|EEG24230.1| hypothetical protein EIKCOROL_00863 [Eikenella corrodens ATCC
23834]
Length = 151
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 101/144 (70%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
VH YTDGAC GNPGPGGWGVLLRY EK + GGE +TTNNRMEL A I+ L AL PC
Sbjct: 6 TVHLYTDGACKGNPGPGGWGVLLRYGRHEKELCGGEADTTNNRMELTAVIRGLEALNRPC 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V ++TDS YV G WI W++NGWKTS K+ VKN +LW + + A+H+V W+KG
Sbjct: 66 QVTIHTDSQYVKNGMESWIHGWKKNGWKTSAKQPVKNAELWQQLDQQVARHQVSWQWVKG 125
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG+ ENE+ D++A A + N+
Sbjct: 126 HAGHPENERADQLANQGAANISNE 149
>gi|113868434|ref|YP_726923.1| ribonuclease H [Ralstonia eutropha H16]
gi|123133822|sp|Q0K8W6|RNH_RALEH RecName: Full=Ribonuclease H; Short=RNase H
gi|113527210|emb|CAJ93555.1| Ribonuclease HI [Ralstonia eutropha H16]
Length = 145
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 94/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L EK + GGE TTNNRME+ A I+AL ALK
Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGASEKEMFGGEPNTTNNRMEMTAVIEALRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW + + H++ +W+
Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ D +A S
Sbjct: 121 RGHNGHPGNERADALANRGVESI 143
>gi|323963755|gb|EGB59257.1| RNase H [Escherichia coli M863]
gi|327254933|gb|EGE66543.1| ribonuclease H [Escherichia coli STEC_7v]
Length = 155
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|85707709|ref|ZP_01038775.1| ribonuclease H [Erythrobacter sp. NAP1]
gi|85689243|gb|EAQ29246.1| ribonuclease H [Erythrobacter sp. NAP1]
Length = 154
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 104/144 (72%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S+ ++ V +TDGAC GNPGPGGWG LLR EK +SGGE +TTNNRMEL AAI+ L A
Sbjct: 5 SRPMKHVEIFTDGACKGNPGPGGWGALLRLGKHEKELSGGEADTTNNRMELTAAIEGLRA 64
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L PCKV LY+DS YV G ++W+ W++ GW + KK V+N DLW ++ +++H+V
Sbjct: 65 LIEPCKVDLYSDSKYVIDGITKWVHGWKKRGWVNASKKPVRNSDLWHDLIDVTSRHEVSW 124
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH+G+ ENE+VD++A + A
Sbjct: 125 HWVKGHSGHTENERVDQLASDEAD 148
>gi|167562347|ref|ZP_02355263.1| RNase H [Burkholderia oklahomensis EO147]
gi|167574355|ref|ZP_02367229.1| RNase H [Burkholderia oklahomensis C6786]
Length = 148
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 79/144 (54%), Positives = 97/144 (67%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL LK
Sbjct: 2 TLQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEAGTTNNRMELTAVIAALEVLK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH ++ W
Sbjct: 62 RPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDIEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGHAG+ ENE+ D +A S
Sbjct: 122 VKGHAGHPENERADALANRGVESL 145
>gi|194290094|ref|YP_002006001.1| ribonuclease h [Cupriavidus taiwanensis LMG 19424]
gi|193223929|emb|CAQ69938.1| Ribonuclease H (RNase H) [Cupriavidus taiwanensis LMG 19424]
Length = 145
Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 93/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L EK + GGE TTNNRME+ A I+AL ALK
Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGTSEKELFGGEPNTTNNRMEMTAVIEALRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW + H++ +W+
Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQALDTLAQAHQISWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ D +A S
Sbjct: 121 RGHNGHPGNERADALANRGVESI 143
>gi|308198439|pdb|3AA2|A Chain A, A52i E. Coli Rnase Hi
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMA I AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAIIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|83719592|ref|YP_443302.1| RNase H [Burkholderia thailandensis E264]
gi|167582321|ref|ZP_02375195.1| RNase H [Burkholderia thailandensis TXDOH]
gi|167620418|ref|ZP_02389049.1| RNase H [Burkholderia thailandensis Bt4]
gi|257139539|ref|ZP_05587801.1| RNase H [Burkholderia thailandensis E264]
gi|83653417|gb|ABC37480.1| RNase H [Burkholderia thailandensis E264]
Length = 148
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 82/144 (56%), Positives = 98/144 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMEL A I AL ALK
Sbjct: 2 TLQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEAGTTNNRMELTAVIAALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K VKN DLW K AQH V+ W
Sbjct: 62 RPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQKLDALVAQHDVEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGHAG+ ENE+ D +A S
Sbjct: 122 VKGHAGHPENERADALANRGVESL 145
>gi|73541876|ref|YP_296396.1| ribonuclease H [Ralstonia eutropha JMP134]
gi|123732893|sp|Q46Z81|RNH_RALEJ RecName: Full=Ribonuclease H; Short=RNase H
gi|72119289|gb|AAZ61552.1| Ribonuclease H [Ralstonia eutropha JMP134]
Length = 145
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L EK + GGE TTNNRME+ A I+AL ALK
Sbjct: 1 MQEVIIYSDGACKGNPGRGGWGAVLVAGTNEKELFGGEANTTNNRMEMTAVIEALRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW + HK+ +W+
Sbjct: 61 PCTVQVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLVQPHKITWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ D +A S
Sbjct: 121 RGHNGHPGNERADALANRGVASL 143
>gi|15799890|ref|NP_285902.1| ribonuclease H [Escherichia coli O157:H7 EDL933]
gi|15829464|ref|NP_308237.1| ribonuclease H [Escherichia coli O157:H7 str. Sakai]
gi|16128201|ref|NP_414750.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|30061766|ref|NP_835937.1| ribonuclease H [Shigella flexneri 2a str. 2457T]
gi|74310829|ref|YP_309248.1| ribonuclease H [Shigella sonnei Ss046]
gi|82542807|ref|YP_406754.1| ribonuclease H [Shigella boydii Sb227]
gi|82775600|ref|YP_401947.1| ribonuclease H [Shigella dysenteriae Sd197]
gi|89107089|ref|AP_000869.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. W3110]
gi|157156093|ref|YP_001461380.1| ribonuclease H [Escherichia coli E24377A]
gi|161485946|ref|NP_706155.2| ribonuclease H [Shigella flexneri 2a str. 301]
gi|168750162|ref|ZP_02775184.1| ribonuclease H [Escherichia coli O157:H7 str. EC4113]
gi|168757207|ref|ZP_02782214.1| ribonuclease H [Escherichia coli O157:H7 str. EC4401]
gi|168763422|ref|ZP_02788429.1| ribonuclease H [Escherichia coli O157:H7 str. EC4501]
gi|168769977|ref|ZP_02794984.1| ribonuclease H [Escherichia coli O157:H7 str. EC4486]
gi|168776182|ref|ZP_02801189.1| ribonuclease H [Escherichia coli O157:H7 str. EC4196]
gi|168782939|ref|ZP_02807946.1| ribonuclease H [Escherichia coli O157:H7 str. EC4076]
gi|168789657|ref|ZP_02814664.1| ribonuclease H [Escherichia coli O157:H7 str. EC869]
gi|168800384|ref|ZP_02825391.1| ribonuclease H [Escherichia coli O157:H7 str. EC508]
gi|170021438|ref|YP_001726392.1| ribonuclease H [Escherichia coli ATCC 8739]
gi|170079845|ref|YP_001729165.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. DH10B]
gi|170682534|ref|YP_001742337.1| ribonuclease H [Escherichia coli SMS-3-5]
gi|187730560|ref|YP_001879011.1| ribonuclease H [Shigella boydii CDC 3083-94]
gi|188495937|ref|ZP_03003207.1| ribonuclease H [Escherichia coli 53638]
gi|191167012|ref|ZP_03028834.1| ribonuclease H [Escherichia coli B7A]
gi|193067575|ref|ZP_03048542.1| ribonuclease H [Escherichia coli E110019]
gi|194438212|ref|ZP_03070304.1| ribonuclease H [Escherichia coli 101-1]
gi|195938586|ref|ZP_03083968.1| ribonuclease H [Escherichia coli O157:H7 str. EC4024]
gi|208808292|ref|ZP_03250629.1| ribonuclease H [Escherichia coli O157:H7 str. EC4206]
gi|208811997|ref|ZP_03253326.1| ribonuclease H [Escherichia coli O157:H7 str. EC4045]
gi|208820698|ref|ZP_03261018.1| ribonuclease H [Escherichia coli O157:H7 str. EC4042]
gi|209396174|ref|YP_002268817.1| ribonuclease H [Escherichia coli O157:H7 str. EC4115]
gi|209917401|ref|YP_002291485.1| ribonuclease H [Escherichia coli SE11]
gi|217324249|ref|ZP_03440333.1| ribonuclease H [Escherichia coli O157:H7 str. TW14588]
gi|218547664|ref|YP_002381455.1| ribonuclease H [Escherichia fergusonii ATCC 35469]
gi|218552789|ref|YP_002385702.1| ribonuclease H [Escherichia coli IAI1]
gi|218557150|ref|YP_002390063.1| ribonuclease H [Escherichia coli S88]
gi|218688084|ref|YP_002396296.1| ribonuclease H [Escherichia coli ED1a]
gi|218698839|ref|YP_002406468.1| ribonuclease H [Escherichia coli IAI39]
gi|218703463|ref|YP_002410982.1| ribonuclease H [Escherichia coli UMN026]
gi|238899607|ref|YP_002925403.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
BW2952]
gi|253774764|ref|YP_003037595.1| ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160328|ref|YP_003043436.1| ribonuclease H [Escherichia coli B str. REL606]
gi|254791341|ref|YP_003076178.1| ribonuclease H [Escherichia coli O157:H7 str. TW14359]
gi|256020180|ref|ZP_05434045.1| ribonuclease H [Shigella sp. D9]
gi|256024147|ref|ZP_05438012.1| ribonuclease H [Escherichia sp. 4_1_40B]
gi|260853419|ref|YP_003227310.1| ribonuclease HI [Escherichia coli O26:H11 str. 11368]
gi|260866357|ref|YP_003232759.1| ribonuclease HI [Escherichia coli O111:H- str. 11128]
gi|261223755|ref|ZP_05938036.1| ribonuclease H [Escherichia coli O157:H7 str. FRIK2000]
gi|261255835|ref|ZP_05948368.1| ribonuclease H [Escherichia coli O157:H7 str. FRIK966]
gi|291281031|ref|YP_003497849.1| RNase HI [Escherichia coli O55:H7 str. CB9615]
gi|293403293|ref|ZP_06647384.1| rnhA [Escherichia coli FVEC1412]
gi|293408303|ref|ZP_06652142.1| ribonuclease HI [Escherichia coli B354]
gi|293413469|ref|ZP_06656118.1| ribonuclease HI [Escherichia coli B185]
gi|293418308|ref|ZP_06660743.1| ribonuclease HI [Escherichia coli B088]
gi|297518675|ref|ZP_06937061.1| ribonuclease H [Escherichia coli OP50]
gi|298378907|ref|ZP_06988788.1| ribonuclease H [Escherichia coli FVEC1302]
gi|300900030|ref|ZP_07118227.1| ribonuclease HI [Escherichia coli MS 198-1]
gi|300905643|ref|ZP_07123389.1| ribonuclease HI [Escherichia coli MS 84-1]
gi|300919146|ref|ZP_07135679.1| ribonuclease HI [Escherichia coli MS 115-1]
gi|300926566|ref|ZP_07142352.1| ribonuclease HI [Escherichia coli MS 182-1]
gi|300949354|ref|ZP_07163366.1| ribonuclease HI [Escherichia coli MS 116-1]
gi|301021446|ref|ZP_07185470.1| ribonuclease HI [Escherichia coli MS 69-1]
gi|301029641|ref|ZP_07192703.1| ribonuclease HI [Escherichia coli MS 196-1]
gi|301645471|ref|ZP_07245408.1| ribonuclease HI [Escherichia coli MS 146-1]
gi|307136809|ref|ZP_07496165.1| ribonuclease H [Escherichia coli H736]
gi|307314696|ref|ZP_07594294.1| Ribonuclease H [Escherichia coli W]
gi|309787111|ref|ZP_07681723.1| ribonuclease H [Shigella dysenteriae 1617]
gi|312970312|ref|ZP_07784493.1| ribonuclease H [Escherichia coli 1827-70]
gi|331661585|ref|ZP_08362508.1| ribonuclease HI [Escherichia coli TA143]
gi|331666455|ref|ZP_08367335.1| ribonuclease HI [Escherichia coli TA271]
gi|67472286|sp|P0A7Y4|RNH_ECOLI RecName: Full=Ribonuclease HI; Short=RNase HI; AltName:
Full=Ribonuclease H; Short=RNase H
gi|67472287|sp|P0A7Y5|RNH_ECOL6 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|67472288|sp|P0A7Y6|RNH_ECO57 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|67472289|sp|P0A7Y7|RNH_SHIFL RecName: Full=Ribonuclease HI; Short=RNase HI
gi|123560512|sp|Q325T2|RNH_SHIBS RecName: Full=Ribonuclease H; Short=RNase H
gi|123563454|sp|Q32JP9|RNH_SHIDS RecName: Full=Ribonuclease H; Short=RNase H
gi|123732410|sp|Q3Z5E9|RNH_SHISS RecName: Full=Ribonuclease H; Short=RNase H
gi|189043687|sp|A7ZHV1|RNH_ECO24 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043689|sp|B1IPU4|RNH_ECOLC RecName: Full=Ribonuclease H; Short=RNase H
gi|226736830|sp|B7MBJ0|RNH_ECO45 RecName: Full=Ribonuclease H; Short=RNase H
gi|226736831|sp|B7NKW4|RNH_ECO7I RecName: Full=Ribonuclease H; Short=RNase H
gi|226736832|sp|B7M213|RNH_ECO8A RecName: Full=Ribonuclease H; Short=RNase H
gi|226736833|sp|B7N876|RNH_ECOLU RecName: Full=Ribonuclease H; Short=RNase H
gi|226736834|sp|B1LHM3|RNH_ECOSM RecName: Full=Ribonuclease H; Short=RNase H
gi|226736835|sp|B7LW89|RNH_ESCF3 RecName: Full=Ribonuclease H; Short=RNase H
gi|229564306|sp|B1XD78|RNH_ECODH RecName: Full=Ribonuclease H; Short=RNase H
gi|238056787|sp|B5Z0I8|RNH_ECO5E RecName: Full=Ribonuclease H; Short=RNase H
gi|238056788|sp|B6HZS7|RNH_ECOSE RecName: Full=Ribonuclease H; Short=RNase H
gi|238689502|sp|B2U352|RNH_SHIB3 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808026|sp|B7MQ23|RNH_ECO81 RecName: Full=Ribonuclease H; Short=RNase H
gi|259494078|sp|C4ZRV1|RNH_ECOBW RecName: Full=Ribonuclease H; Short=RNase H
gi|157833653|pdb|1RCH|A Chain A, Solution Nmr Structure Of Ribonuclease Hi From Escherichia
Coli, 8 Structures
gi|157833661|pdb|1RDD|A Chain A, Crystal Structure Of Escherichia Coli Rnase Hi In Complex
With Mg2+ At 2.8 Angstroms Resolution: Proof For A
Single Mg2+ Site
gi|157836338|pdb|2RN2|A Chain A, Structural Details Of Ribonuclease H From Escherichia Coli
As Refined To An Atomic Resolution
gi|12512942|gb|AAG54510.1|AE005196_8 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli O157:H7 str. EDL933]
gi|42062|emb|CAA27660.1| unnamed protein product [Escherichia coli]
gi|42777|emb|CAA23620.1| ribonuclease H [Escherichia coli]
gi|147680|gb|AAA24565.1| ribonuclease H [Escherichia coli]
gi|1552784|gb|AAB08636.1| ribonuclease H [Escherichia coli]
gi|1786408|gb|AAC73319.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|4902951|dbj|BAA77885.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K12 substr. W3110]
gi|13359666|dbj|BAB33633.1| RNase HI [Escherichia coli O157:H7 str. Sakai]
gi|30040008|gb|AAP15742.1| RNase HI [Shigella flexneri 2a str. 2457T]
gi|73854306|gb|AAZ87013.1| RNase HI [Shigella sonnei Ss046]
gi|81239748|gb|ABB60458.1| RNase HI [Shigella dysenteriae Sd197]
gi|81244218|gb|ABB64926.1| RNase HI [Shigella boydii Sb227]
gi|157078123|gb|ABV17831.1| ribonuclease H [Escherichia coli E24377A]
gi|169756366|gb|ACA79065.1| Ribonuclease H [Escherichia coli ATCC 8739]
gi|169887680|gb|ACB01387.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. DH10B]
gi|170520252|gb|ACB18430.1| ribonuclease H [Escherichia coli SMS-3-5]
gi|187427552|gb|ACD06826.1| ribonuclease H [Shigella boydii CDC 3083-94]
gi|187768426|gb|EDU32270.1| ribonuclease H [Escherichia coli O157:H7 str. EC4196]
gi|188015545|gb|EDU53667.1| ribonuclease H [Escherichia coli O157:H7 str. EC4113]
gi|188491136|gb|EDU66239.1| ribonuclease H [Escherichia coli 53638]
gi|188999616|gb|EDU68602.1| ribonuclease H [Escherichia coli O157:H7 str. EC4076]
gi|189355700|gb|EDU74119.1| ribonuclease H [Escherichia coli O157:H7 str. EC4401]
gi|189361084|gb|EDU79503.1| ribonuclease H [Escherichia coli O157:H7 str. EC4486]
gi|189366386|gb|EDU84802.1| ribonuclease H [Escherichia coli O157:H7 str. EC4501]
gi|189370760|gb|EDU89176.1| ribonuclease H [Escherichia coli O157:H7 str. EC869]
gi|189377335|gb|EDU95751.1| ribonuclease H [Escherichia coli O157:H7 str. EC508]
gi|190902905|gb|EDV62632.1| ribonuclease H [Escherichia coli B7A]
gi|192958987|gb|EDV89423.1| ribonuclease H [Escherichia coli E110019]
gi|194422876|gb|EDX38871.1| ribonuclease H [Escherichia coli 101-1]
gi|208728093|gb|EDZ77694.1| ribonuclease H [Escherichia coli O157:H7 str. EC4206]
gi|208733274|gb|EDZ81961.1| ribonuclease H [Escherichia coli O157:H7 str. EC4045]
gi|208740821|gb|EDZ88503.1| ribonuclease H [Escherichia coli O157:H7 str. EC4042]
gi|209157574|gb|ACI35007.1| ribonuclease H [Escherichia coli O157:H7 str. EC4115]
gi|209745484|gb|ACI71049.1| RNase HI [Escherichia coli]
gi|209745486|gb|ACI71050.1| RNase HI [Escherichia coli]
gi|209745488|gb|ACI71051.1| RNase HI [Escherichia coli]
gi|209745490|gb|ACI71052.1| RNase HI [Escherichia coli]
gi|209745492|gb|ACI71053.1| RNase HI [Escherichia coli]
gi|209910660|dbj|BAG75734.1| ribonuclease H [Escherichia coli SE11]
gi|217320470|gb|EEC28894.1| ribonuclease H [Escherichia coli O157:H7 str. TW14588]
gi|218355205|emb|CAQ87812.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia
fergusonii ATCC 35469]
gi|218359557|emb|CAQ97097.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
IAI1]
gi|218363919|emb|CAR01584.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
S88]
gi|218368825|emb|CAR16573.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
IAI39]
gi|218425648|emb|CAR06435.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
ED1a]
gi|218430560|emb|CAR11426.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
UMN026]
gi|238863469|gb|ACR65467.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
BW2952]
gi|242376044|emb|CAQ30729.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli BL21(DE3)]
gi|253325808|gb|ACT30410.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972229|gb|ACT37900.1| ribonuclease H [Escherichia coli B str. REL606]
gi|253976438|gb|ACT42108.1| ribonuclease H [Escherichia coli BL21(DE3)]
gi|254590741|gb|ACT70102.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O157:H7 str. TW14359]
gi|257752068|dbj|BAI23570.1| ribonuclease HI [Escherichia coli O26:H11 str. 11368]
gi|257762713|dbj|BAI34208.1| ribonuclease HI [Escherichia coli O111:H- str. 11128]
gi|260450589|gb|ACX41011.1| Ribonuclease H [Escherichia coli DH1]
gi|284919984|emb|CBG33039.1| ribonuclease HI [Escherichia coli 042]
gi|290760904|gb|ADD54865.1| RNase HI [Escherichia coli O55:H7 str. CB9615]
gi|291324836|gb|EFE64251.1| ribonuclease HI [Escherichia coli B088]
gi|291429146|gb|EFF02166.1| rnhA [Escherichia coli FVEC1412]
gi|291433527|gb|EFF06500.1| ribonuclease HI [Escherichia coli B185]
gi|291471481|gb|EFF13964.1| ribonuclease HI [Escherichia coli B354]
gi|294493120|gb|ADE91876.1| ribonuclease H [Escherichia coli IHE3034]
gi|298280020|gb|EFI21524.1| ribonuclease H [Escherichia coli FVEC1302]
gi|299877468|gb|EFI85679.1| ribonuclease HI [Escherichia coli MS 196-1]
gi|300356435|gb|EFJ72305.1| ribonuclease HI [Escherichia coli MS 198-1]
gi|300398082|gb|EFJ81620.1| ribonuclease HI [Escherichia coli MS 69-1]
gi|300402535|gb|EFJ86073.1| ribonuclease HI [Escherichia coli MS 84-1]
gi|300413744|gb|EFJ97054.1| ribonuclease HI [Escherichia coli MS 115-1]
gi|300417424|gb|EFK00735.1| ribonuclease HI [Escherichia coli MS 182-1]
gi|300451237|gb|EFK14857.1| ribonuclease HI [Escherichia coli MS 116-1]
gi|301076260|gb|EFK91066.1| ribonuclease HI [Escherichia coli MS 146-1]
gi|306905815|gb|EFN36340.1| Ribonuclease H [Escherichia coli W]
gi|307628304|gb|ADN72608.1| ribonuclease H [Escherichia coli UM146]
gi|308924689|gb|EFP70184.1| ribonuclease H [Shigella dysenteriae 1617]
gi|309700416|emb|CBI99705.1| ribonuclease HI [Escherichia coli ETEC H10407]
gi|310336961|gb|EFQ02099.1| ribonuclease H [Escherichia coli 1827-70]
gi|313646729|gb|EFS11188.1| ribonuclease H [Shigella flexneri 2a str. 2457T]
gi|315059427|gb|ADT73754.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
W]
gi|315134899|dbj|BAJ42058.1| ribonuclease H [Escherichia coli DH1]
gi|315289702|gb|EFU49095.1| ribonuclease HI [Escherichia coli MS 110-3]
gi|315616888|gb|EFU97505.1| ribonuclease H [Escherichia coli 3431]
gi|320173694|gb|EFW48883.1| Ribonuclease HI [Shigella dysenteriae CDC 74-1112]
gi|320179851|gb|EFW54797.1| Ribonuclease HI [Shigella boydii ATCC 9905]
gi|320186398|gb|EFW61130.1| Ribonuclease HI [Shigella flexneri CDC 796-83]
gi|320190265|gb|EFW64915.1| Ribonuclease HI [Escherichia coli O157:H7 str. EC1212]
gi|320638234|gb|EFX07962.1| ribonuclease H [Escherichia coli O157:H7 str. G5101]
gi|320643618|gb|EFX12762.1| ribonuclease H [Escherichia coli O157:H- str. 493-89]
gi|320650354|gb|EFX18831.1| ribonuclease H [Escherichia coli O157:H- str. H 2687]
gi|320654629|gb|EFX22630.1| ribonuclease H [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660197|gb|EFX27707.1| ribonuclease H [Escherichia coli O55:H7 str. USDA 5905]
gi|320665448|gb|EFX32510.1| ribonuclease H [Escherichia coli O157:H7 str. LSU-61]
gi|323157951|gb|EFZ44053.1| ribonuclease H [Escherichia coli EPECa14]
gi|323176526|gb|EFZ62118.1| ribonuclease H [Escherichia coli 1180]
gi|323181626|gb|EFZ67041.1| ribonuclease H [Escherichia coli 1357]
gi|323380014|gb|ADX52282.1| Ribonuclease H [Escherichia coli KO11]
gi|323938757|gb|EGB35003.1| RNase H [Escherichia coli E1520]
gi|323943405|gb|EGB39557.1| RNase H [Escherichia coli E482]
gi|323945582|gb|EGB41632.1| RNase H [Escherichia coli H120]
gi|323948752|gb|EGB44652.1| RNase H [Escherichia coli H252]
gi|323958798|gb|EGB54497.1| RNase H [Escherichia coli H263]
gi|323963577|gb|EGB59134.1| RNase H [Escherichia coli H489]
gi|323972506|gb|EGB67712.1| RNase H [Escherichia coli TA007]
gi|323975919|gb|EGB71014.1| RNase H [Escherichia coli TW10509]
gi|324020674|gb|EGB89893.1| ribonuclease HI [Escherichia coli MS 117-3]
gi|324111224|gb|EGC05207.1| RNase H [Escherichia fergusonii B253]
gi|324115458|gb|EGC09400.1| RNase H [Escherichia coli E1167]
gi|325496140|gb|EGC93999.1| ribonuclease H [Escherichia fergusonii ECD227]
gi|326338810|gb|EGD62629.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1044]
gi|326342398|gb|EGD66178.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1125]
gi|330910060|gb|EGH38570.1| ribonuclease H1 [Escherichia coli AA86]
gi|331060007|gb|EGI31971.1| ribonuclease HI [Escherichia coli TA143]
gi|331066300|gb|EGI38178.1| ribonuclease HI [Escherichia coli TA271]
gi|332093750|gb|EGI98805.1| ribonuclease H [Shigella boydii 3594-74]
gi|332341542|gb|AEE54876.1| ribonuclease HI RnhA [Escherichia coli UMNK88]
gi|332754110|gb|EGJ84480.1| ribonuclease H [Shigella flexneri 2747-71]
gi|332761997|gb|EGJ92269.1| ribonuclease H [Shigella flexneri 4343-70]
gi|332764638|gb|EGJ94868.1| ribonuclease H [Shigella flexneri K-671]
gi|332768613|gb|EGJ98794.1| ribonuclease HI [Shigella flexneri 2930-71]
gi|333009001|gb|EGK28460.1| ribonuclease H [Shigella flexneri K-218]
gi|333009687|gb|EGK29137.1| ribonuclease H [Shigella flexneri VA-6]
gi|333010754|gb|EGK30180.1| ribonuclease H [Shigella flexneri K-272]
gi|333021253|gb|EGK40506.1| ribonuclease H [Shigella flexneri K-227]
gi|333022172|gb|EGK41412.1| ribonuclease H [Shigella flexneri K-304]
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157833640|pdb|1RBT|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+D K VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157833639|pdb|1RBS|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 ACEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157833659|pdb|1RDB|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRM+LMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMQLMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|308185775|ref|YP_003929906.1| Ribonuclease HI [Pantoea vagans C9-1]
gi|308056285|gb|ADO08457.1| Ribonuclease HI [Pantoea vagans C9-1]
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY EK S G TTNNRMELMAAI +L AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYGQHEKTFSAGYYLTTNNRMELMAAIVSLEALTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + HK+ W+K
Sbjct: 63 CDVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLALSTHKIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR+AA +
Sbjct: 123 GHAGHPENERCDVLARSAAEN 143
>gi|157833642|pdb|1RBV|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+D K VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|323165913|gb|EFZ51695.1| ribonuclease H [Shigella sonnei 53G]
Length = 155
Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTSTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|294012805|ref|YP_003546265.1| ribonuclease HI [Sphingobium japonicum UT26S]
gi|292676135|dbj|BAI97653.1| ribonuclease HI [Sphingobium japonicum UT26S]
Length = 148
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 111/147 (75%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L +V +TDGAC GNPGPGGWG +LR+ KEK ISGGE +TTNNRME+MAA++AL L
Sbjct: 2 SDLPQVEIFTDGACKGNPGPGGWGAVLRFGEKEKEISGGEAQTTNNRMEMMAAVQALETL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K PC+V L+TDS YV G ++W+ WQ+NGWKT+D+K VKN +LW + V A+A+HKV
Sbjct: 62 KRPCRVTLHTDSKYVMDGITKWVFGWQKNGWKTADRKPVKNAELWQELVRAAARHKVTWQ 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D++A AA F+
Sbjct: 122 WVKGHAGHPENERADQLACAAAEQFRK 148
>gi|227329797|ref|ZP_03833821.1| ribonuclease H [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 154
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/141 (56%), Positives = 99/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLTTNNRMELMAAIAALETLTTA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW K A H V W+K
Sbjct: 63 CDVVLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQKLDAAIQHHSVQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAASA 143
>gi|157833641|pdb|1RBU|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+D K VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157831220|pdb|1GOB|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV + +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQAITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157369156|ref|YP_001477145.1| ribonuclease H [Serratia proteamaculans 568]
gi|189043710|sp|A8GA77|RNH_SERP5 RecName: Full=Ribonuclease H; Short=RNase H
gi|157320920|gb|ABV40017.1| Ribonuclease H [Serratia proteamaculans 568]
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 103/142 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYKQTEKTFSAGFRLTTNNRMEMMAAIVALEALTT 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A +H V W+
Sbjct: 62 PCEVTLSTDSQYVRQGITTWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIQRHTVKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR+AA +
Sbjct: 122 KGHAGHPENERCDVLARDAASN 143
>gi|157831760|pdb|1LAW|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS Y+ +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYIRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|261820458|ref|YP_003258564.1| ribonuclease H [Pectobacterium wasabiae WPP163]
gi|261604471|gb|ACX86957.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
Length = 154
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLTTNNRMELMAAIAALETLTTD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A +H V W+K
Sbjct: 63 CDVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDTAIQRHSVRWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAASA 143
>gi|83645319|ref|YP_433754.1| ribonuclease HI [Hahella chejuensis KCTC 2396]
gi|123726401|sp|Q2SJ45|RNH_HAHCH RecName: Full=Ribonuclease H; Short=RNase H
gi|83633362|gb|ABC29329.1| Ribonuclease HI [Hahella chejuensis KCTC 2396]
Length = 148
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 94/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGAC NPGPGGWG +L Y EK I GGE +TTNNRMELMAAI+AL ALK
Sbjct: 1 MKTVEIYTDGACKKNPGPGGWGAILIYGKNEKEIYGGELDTTNNRMELMAAIEALRALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV LYTDS YV KG ++W++ W + GW+TS VKN+DLW + +H + W+
Sbjct: 61 GCKVELYTDSQYVRKGITEWMQNWIKKGWRTSGGDPVKNVDLWQALDKERNKHDISWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ NE+ D +A
Sbjct: 121 KGHSGHPLNERADELANLGVKEA 143
>gi|161486315|ref|NP_752197.2| ribonuclease H [Escherichia coli CFT073]
gi|331656204|ref|ZP_08357166.1| ribonuclease HI [Escherichia coli TA206]
gi|331681595|ref|ZP_08382231.1| ribonuclease HI [Escherichia coli H299]
gi|307552061|gb|ADN44836.1| RNase HI [Escherichia coli ABU 83972]
gi|315300179|gb|EFU59416.1| ribonuclease HI [Escherichia coli MS 16-3]
gi|331054452|gb|EGI26461.1| ribonuclease HI [Escherichia coli TA206]
gi|331081169|gb|EGI52331.1| ribonuclease HI [Escherichia coli H299]
Length = 155
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G ++WI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|323143748|ref|ZP_08078416.1| ribonuclease HI [Succinatimonas hippei YIT 12066]
gi|322416461|gb|EFY07127.1| ribonuclease HI [Succinatimonas hippei YIT 12066]
Length = 154
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 97/140 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E++ YTDG+C NPGPGG+GV+L+YK K +S G +TTNNRME+MA I L LK
Sbjct: 1 MKEINLYTDGSCLNNPGPGGYGVILKYKEHVKELSCGYLQTTNNRMEIMAVIVGLEQLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V + +DS YV G + WIK W++NGW TS+KK VKN DLW + +H V W+
Sbjct: 61 PCCVTVTSDSQYVKNGITSWIKTWKRNGWMTSNKKPVKNKDLWQRLDSLCQKHLVKWEWV 120
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 121 KGHAGHAENERCDELARAAA 140
>gi|281177434|dbj|BAI53764.1| ribonuclease H [Escherichia coli SE15]
Length = 155
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCKVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|311280821|ref|YP_003943052.1| Ribonuclease H [Enterobacter cloacae SCF1]
gi|308750016|gb|ADO49768.1| Ribonuclease H [Enterobacter cloacae SCF1]
Length = 155
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+ EK S G TTNNRMELMAAI AL LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRQHEKTFSAGYYMTTNNRMELMAAIVALEGLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A + H++ W+
Sbjct: 62 HCEVVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHQIRWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA+S
Sbjct: 122 KGHAGHPENERCDELARAAAMS 143
>gi|319784690|ref|YP_004144166.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170578|gb|ADV14116.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 176
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 86/144 (59%), Positives = 105/144 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGACSGNPGPGGWG +LR+ G K +SGGE ETTNNRMEL+AAI AL ALK P
Sbjct: 3 KQVEIFTDGACSGNPGPGGWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L+TDS YV G S+WI W++NGWKT+DKK VKN +LW EA+ +HKV W+K
Sbjct: 63 CTVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANKRHKVTWNWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ ENE+ D +AR FK
Sbjct: 123 GHDGHVENERADELAREGMAPFKK 146
>gi|288958379|ref|YP_003448720.1| ribonuclease HI [Azospirillum sp. B510]
gi|288910687|dbj|BAI72176.1| ribonuclease HI [Azospirillum sp. B510]
Length = 158
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 102/147 (69%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ V +TDGACSGNPGPGGWG +LRY EK + GGE TTNNRMELMAAI AL ALK
Sbjct: 11 RPKTVDIFTDGACSGNPGPGGWGAILRYGEVEKELYGGEPATTNNRMELMAAIMALEALK 70
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P V L+TDS YV G ++WI W+ GW T+D+K VKN+DLW + EA QH+++ +W
Sbjct: 71 KPVTVRLFTDSEYVKNGITKWIHGWKAKGWMTADRKPVKNVDLWQRLEEAKRQHQIEFHW 130
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
++GHAG+ ENE+ D +AR + +
Sbjct: 131 VRGHAGHPENERADELARRGVADVRAQ 157
>gi|330503133|ref|YP_004380002.1| ribonuclease H [Pseudomonas mendocina NK-01]
gi|328917419|gb|AEB58250.1| ribonuclease H [Pseudomonas mendocina NK-01]
Length = 150
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 95/144 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
EV YTDGAC GNPGPGGWG LL YKG EK + GG+ TTNNRMELMAAI L AL P
Sbjct: 5 DEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPNTTNNRMELMAAIAGLIALTRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV KG +W+ W++ GWKT+ K+ VKN DLW K E +H+V W++
Sbjct: 65 CSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEEVNRHQVSWQWVR 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ NE+ D++A ++
Sbjct: 125 GHTGHPGNERADQLANRGVDEVRS 148
>gi|37524934|ref|NP_928278.1| ribonuclease HI (RNase HI) (ribonuclease H) (RNaseH) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81834060|sp|Q7N807|RNH_PHOLL RecName: Full=Ribonuclease H; Short=RNase H
gi|36784360|emb|CAE13237.1| ribonuclease HI (RNase HI) (Ribonuclease H) (RNaseH) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 156
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GVLLRY+ EK +S G TTNNRMELMAAI L L P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVLLRYQQHEKTLSEGFYHTTNNRMELMAAIIGLETLTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CK++L TDS YV +G +QWI W++ GW+ +DK V N+DLW + +A ++H +D W+K
Sbjct: 63 CKIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHNIDWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA S
Sbjct: 123 GHAGHDENERCDELARAAANS 143
>gi|308198442|pdb|3AA5|X Chain X, A52f E.Coli Rnase Hi
Length = 155
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMA I AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAFIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|88703293|ref|ZP_01101009.1| Ribonuclease HI [Congregibacter litoralis KT71]
gi|88702007|gb|EAQ99110.1| Ribonuclease HI [Congregibacter litoralis KT71]
Length = 145
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 94/143 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGWG LL Y KE+ + GG +TTNNRMEL AAI+ L A+
Sbjct: 1 MKRVDLFTDGACRGNPGPGGWGALLVYGSKERELYGGAADTTNNRMELSAAIEGLAAISE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS+YV KG ++W+ W++ GWKT+ KK V N DLW + +H ++ W+
Sbjct: 61 PCAVKLVTDSTYVMKGITEWLPNWKRRGWKTAAKKPVANADLWQRLEAECERHSIEWEWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ NE+ D +A A
Sbjct: 121 KGHSGHPGNERADALANKAIDEM 143
>gi|56966975|pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966976|pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966977|pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966978|pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|61680231|pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
gi|61680232|pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRM LMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMALMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|120611321|ref|YP_970999.1| ribonuclease H [Acidovorax citrulli AAC00-1]
gi|326317357|ref|YP_004235029.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
gi|187611385|sp|A1TQI7|RNH_ACIAC RecName: Full=Ribonuclease H; Short=RNase H
gi|120589785|gb|ABM33225.1| RNase HI [Acidovorax citrulli AAC00-1]
gi|323374193|gb|ADX46462.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 149
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGV+LR EK + GGE TTNNRMEL+A I+AL ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGVVLRSGALEKELFGGELGTTNNRMELLAVIEALGALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V LY DS YV KG ++WI+ W++ GW+T+ + VKN++LW + + A H +D
Sbjct: 61 PCAVTLYLDSQYVRKGITEWIQGWKKKGWRTASGQPVKNVELWKRLDDLVAGGGHVIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ NE+ D +A
Sbjct: 121 WVKGHAGDPGNERADALANKGVDKA 145
>gi|261346345|ref|ZP_05973989.1| ribonuclease HI [Providencia rustigianii DSM 4541]
gi|282565659|gb|EFB71194.1| ribonuclease HI [Providencia rustigianii DSM 4541]
Length = 156
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRY+ EK +S G TTNNRMEL+AAI AL +L P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYQQHEKTLSDGFFLTTNNRMELLAAIIALESLTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WK +DK V N+DLW + +A +H +D W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKRRQWKKADKSPVVNVDLWKRLDQAITRHTIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENEK D +AR AA S
Sbjct: 123 GHAGHAENEKCDELARAAANS 143
>gi|90420108|ref|ZP_01228016.1| ribonuclease H [Aurantimonas manganoxydans SI85-9A1]
gi|90335442|gb|EAS49192.1| ribonuclease H [Aurantimonas manganoxydans SI85-9A1]
Length = 153
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 106/144 (73%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG +LR+ G EK + GGE+ TTNNRMEL+A I+ALTALK C
Sbjct: 6 RVEIHTDGACSGNPGPGGWGAILRFNGNEKELKGGEEHTTNNRMELLAVIEALTALKRSC 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +Y+DS Y+ G ++WI W++NGWKT+DKK VKN +LW K E +H V +W+KG
Sbjct: 66 PVDIYSDSQYMRDGITKWIHGWKRNGWKTADKKPVKNAELWQKLEEEKGRHDVTFHWVKG 125
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG++ NE+ D++AR+ FK +
Sbjct: 126 HAGDEMNERADQLARDGMEPFKRR 149
>gi|85713112|ref|ZP_01044146.1| Ribonuclease HI [Idiomarina baltica OS145]
gi|85693060|gb|EAQ31024.1| Ribonuclease HI [Idiomarina baltica OS145]
Length = 154
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 103/147 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +VH +TDG+C GNPGPGG+GV+L Y K +SGG + TTNNRMEL+A IK L L
Sbjct: 1 MAKVHIFTDGSCLGNPGPGGYGVVLEYGQHHKELSGGYQCTTNNRMELLACIKGLQVLNR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V+L TDS YV +G QWI W++NGW+TS+KK VKN+DLW + +A A HKV W+
Sbjct: 61 ACDVILTTDSQYVKQGIEQWIHNWKRNGWRTSNKKAVKNVDLWQQLDQAIAAHKVTWEWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ +NE+ D +AR AA ++
Sbjct: 121 KGHAGHPQNERCDELARAAAEQNPTQV 147
>gi|227112970|ref|ZP_03826626.1| ribonuclease H [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 154
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL L
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLTTNNRMELMAAIAALETLTTD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A +H V W+K
Sbjct: 63 CDVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDIAIQRHSVRWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAASA 143
>gi|59712543|ref|YP_205319.1| ribonuclease H [Vibrio fischeri ES114]
gi|81310895|sp|Q5E3G5|RNH_VIBF1 RecName: Full=Ribonuclease H; Short=RNase H
gi|59480644|gb|AAW86431.1| ribonuclease HI [Vibrio fischeri ES114]
Length = 157
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/147 (52%), Positives = 106/147 (72%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ +++V +TDG+C GNPGPGG+G+++RYKG EK S G +TTNNRME++AA+ AL
Sbjct: 1 MITEIMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNRMEMLAAVVAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC V+L TDS YV +G +QWI W++ WK +DKK V N DLW + S +HK+
Sbjct: 61 RKLKEPCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKKPVVNADLWKQLDAESERHKI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
D W+KGHAG++ENE D +AR AA +
Sbjct: 121 DWRWVKGHAGHRENEMCDELARTAAEN 147
>gi|183601083|ref|ZP_02962576.1| hypothetical protein PROSTU_04708 [Providencia stuartii ATCC 25827]
gi|188019424|gb|EDU57464.1| hypothetical protein PROSTU_04708 [Providencia stuartii ATCC 25827]
Length = 156
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 103/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G+LLRY+ EK ++ G TTNNRMEL+AAI AL +LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGILLRYQQHEKTLNEGFFMTTNNRMELLAAIVALESLKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C ++L TDS YV +G +QWI W++ W+ +DK V N+DLW + A A+HK+D W+K
Sbjct: 63 CDIILTTDSQYVRQGITQWIHNWKRRQWRKADKSPVVNVDLWKRLDTAIARHKIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENEK D +AR AA S
Sbjct: 123 GHAGHPENEKCDELARQAAES 143
>gi|23014347|ref|ZP_00054168.1| COG0328: Ribonuclease HI [Magnetospirillum magnetotacticum MS-1]
Length = 154
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 83/145 (57%), Positives = 104/145 (71%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
V YTDGACSGNPGPGGWG +LR+KG EK + GGE +TTNNRME+MA + AL AL
Sbjct: 7 KPETVEIYTDGACSGNPGPGGWGAILRFKGIEKELKGGEPQTTNNRMEMMAVLSALNALT 66
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC + LYTDS YV KG ++W++ W+ GWKT+DKK VKN DLW EA+A+HKV +W
Sbjct: 67 RPCAIDLYTDSEYVKKGMTEWLRGWKARGWKTADKKPVKNDDLWKALDEAAARHKVSWHW 126
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGHAG+ ENE+ D +AR +
Sbjct: 127 VKGHAGHPENERADALAREGIADMR 151
>gi|330829020|ref|YP_004391972.1| ribonuclease H [Aeromonas veronii B565]
gi|328804156|gb|AEB49355.1| Ribonuclease H [Aeromonas veronii B565]
Length = 154
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 72/140 (51%), Positives = 98/140 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+G ++ Y K IS G K TTNNRMELMAAI L L
Sbjct: 2 LKQIDVYTDGSCLGNPGPGGYGAVMVYGKHRKEISAGFKLTTNNRMELMAAIMGLRTLNE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV L TDS YV +G +QWI W++ GW T++++ VKN+DLW + +H+++ W+
Sbjct: 62 PCKVRLTTDSQYVRQGITQWIIGWKKKGWMTANRQPVKNVDLWKELDAEVGRHQIEWLWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+G+ ENE+ D +AR AA
Sbjct: 122 KGHSGHPENERCDELAREAA 141
>gi|226328904|ref|ZP_03804422.1| hypothetical protein PROPEN_02806 [Proteus penneri ATCC 35198]
gi|225202090|gb|EEG84444.1| hypothetical protein PROPEN_02806 [Proteus penneri ATCC 35198]
Length = 157
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/141 (52%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY+ EK +S G TTNNRMEL+AAI AL LK+P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYQQHEKTLSEGFFMTTNNRMELLAAIVALETLKFP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CK+ L TDS YV +G +QWI W++ W+ +DK V N+DLW + A +H+++ +W+K
Sbjct: 63 CKITLTTDSQYVRQGITQWIHSWKKRQWRKADKSPVLNVDLWKRLDSAITRHEIEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA S
Sbjct: 123 GHAGHDENERCDELARTAAQS 143
>gi|197284136|ref|YP_002150008.1| ribonuclease HI [Proteus mirabilis HI4320]
gi|227357998|ref|ZP_03842340.1| ribonuclease HI [Proteus mirabilis ATCC 29906]
gi|238693160|sp|B4EUG3|RNH_PROMH RecName: Full=Ribonuclease H; Short=RNase H
gi|194681623|emb|CAR40651.1| ribonuclease HI [Proteus mirabilis HI4320]
gi|227161733|gb|EEI46765.1| ribonuclease HI [Proteus mirabilis ATCC 29906]
Length = 159
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/141 (51%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY+ EK +S G TTNNRMEL+AAI AL ALK+P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYQQHEKTLSEGFFMTTNNRMELLAAIVALEALKFP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CK+ L TDS YV +G ++WI W++ W+ +DK V N+DLW + +A +H+++ +W+K
Sbjct: 63 CKITLTTDSQYVRQGITKWIHSWKKRQWRKADKSPVLNVDLWKRLDKAIERHEIEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +A+ AA S
Sbjct: 123 GHAGHDENERCDELAKAAAQS 143
>gi|148252527|ref|YP_001237112.1| ribonuclease H [Bradyrhizobium sp. BTAi1]
gi|189043683|sp|A5EAL2|RNH_BRASB RecName: Full=Ribonuclease H; Short=RNase H
gi|146404700|gb|ABQ33206.1| RNase HI [Bradyrhizobium sp. BTAi1]
Length = 154
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 85/146 (58%), Positives = 106/146 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L V YTDGACSGNPGPGGWG +LR+ KEK + GGE TTNNRMELMAAI AL ALK
Sbjct: 4 LPTVSIYTDGACSGNPGPGGWGAILRFGDKEKELKGGEPHTTNNRMELMAAISALEALKK 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LYTDS YV +G + WI W++NGWKT+DKK VKN +LW + A HKV+ +W+
Sbjct: 64 SCQVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAALKPHKVNWHWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D++AR+ + +
Sbjct: 124 KGHAGHAENERADQLARDGVAMARLQ 149
>gi|146307094|ref|YP_001187559.1| ribonuclease H [Pseudomonas mendocina ymp]
gi|189043703|sp|A4XU11|RNH_PSEMY RecName: Full=Ribonuclease H; Short=RNase H
gi|145575295|gb|ABP84827.1| RNase HI [Pseudomonas mendocina ymp]
Length = 150
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 95/144 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
EV YTDGAC GNPGPGGWG LL YKG EK + GG+ TTNNRMELMAAI L AL P
Sbjct: 5 DEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPSTTNNRMELMAAIAGLIALTRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV KG +W+ W++ GWKT+ K+ VKN DLW K E +H+V W++
Sbjct: 65 CSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEEVNRHQVSWQWVR 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ NE+ D++A ++
Sbjct: 125 GHTGHPGNERADQLANRGVDEVRS 148
>gi|260460294|ref|ZP_05808546.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
gi|259033939|gb|EEW35198.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
Length = 176
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 86/144 (59%), Positives = 104/144 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDGACSGNPGPGGWG +LR+ G K +SGGE ETTNNRMEL+AAI AL ALK P
Sbjct: 3 KNVEIFTDGACSGNPGPGGWGAILRFNGATKELSGGEAETTNNRMELLAAISALNALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L+TDS YV G S+WI W++NGWKT+DKK VKN +LW EA+ +HKV W+K
Sbjct: 63 CTVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANRRHKVTWNWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ ENE+ D +AR FK
Sbjct: 123 GHDGHVENERADELARQGMAPFKK 146
>gi|332526657|ref|ZP_08402762.1| ribonuclease H [Rubrivivax benzoatilyticus JA2]
gi|332110918|gb|EGJ11095.1| ribonuclease H [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 96/145 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGAC GNPGPGGWG LR EK + GGE TTNNRMELMA I+ALT+LK
Sbjct: 1 MNEVVIYTDGACKGNPGPGGWGAWLRSGEHEKELWGGEPLTTNNRMELMAVIQALTSLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV +YTDS YV G + WI W+Q GW+T+DKK VKN +LW + ++ H +W+
Sbjct: 61 RCKVAIYTDSEYVRNGITSWIHGWKQRGWRTADKKPVKNAELWQQLDALASSHDTSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ NE+ D +A S +
Sbjct: 121 KGHAGDPGNERADALANRGCESVRR 145
>gi|226939809|ref|YP_002794882.1| RnhA [Laribacter hongkongensis HLHK9]
gi|226714735|gb|ACO73873.1| RnhA [Laribacter hongkongensis HLHK9]
Length = 149
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 98/149 (65%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ K V YTDGAC GNPGPGGWG LLR +G+EK + GG +TTNNRMEL A I+AL
Sbjct: 1 MNQKPDTMVEIYTDGACKGNPGPGGWGALLRCQGQEKELFGGAPDTTNNRMELQAVIEAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC + +YTDS YV KG S+WI W+ GW+T+ K VKN DLW A+H++
Sbjct: 61 RCLKRPCDIDIYTDSQYVQKGISEWITGWKARGWRTASKAPVKNADLWQMLDAEVARHRI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+W+KGHAG++ NE+ D +A +
Sbjct: 121 QWHWVKGHAGHEFNERADELANRGVDLVR 149
>gi|85714345|ref|ZP_01045333.1| ribonuclease H [Nitrobacter sp. Nb-311A]
gi|85698792|gb|EAQ36661.1| ribonuclease H [Nitrobacter sp. Nb-311A]
Length = 151
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 102/151 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S L V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MNSPALPHVTIFTDGACSGNPGPGGWGAILRFGDIEKELKGGEPHTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK P V L TDS YV +G WI W++NGW+T+DKK VKN DLW + A H+V
Sbjct: 61 EALKRPALVDLTTDSQYVRQGIMSWIHNWKRNGWRTADKKPVKNADLWQRLDAALQPHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+WIKGH G+ ENE+ D++AR + K
Sbjct: 121 RWHWIKGHDGHSENERADQLAREGVAIARLK 151
>gi|284009179|emb|CBA76232.1| ribonuclease HI [Arsenophonus nasoniae]
Length = 156
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G+LLRY EK +S G TTNNRMELMAAI L LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGILLRYHKHEKTLSKGYFRTTNNRMELMAAIIGLETLKQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ W+ +DK V N+DLW + A ++H+V+ +W+K
Sbjct: 63 CQVILTTDSQYVRQGITQWIHNWKSRQWRRADKSPVLNVDLWQRLDAAISRHQVEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +ARNAA S
Sbjct: 123 GHAGHPENERCDELARNAANS 143
>gi|323703339|ref|ZP_08114989.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
gi|323531702|gb|EGB21591.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
Length = 154
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPGPGG+GV+L Y+G K +SGG ++TTNNRME++AAI L ALK
Sbjct: 1 MKDVVIYTDGACSGNPGPGGYGVVLLYQGHRKELSGGFRDTTNNRMEILAAIVGLEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C V +YTDS Y++ + KKW+ NGW + K+ N DLW + ++ +H V W
Sbjct: 61 SCNVTVYTDSQYLYNAIEKGWAKKWRANGWMRNKKEPALNPDLWDRLLKLMERHNVKFVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHAG+ ENE+ D++A AA
Sbjct: 121 VKGHAGHPENERCDQLAVAAAKQ 143
>gi|170767817|ref|ZP_02902270.1| ribonuclease H [Escherichia albertii TW07627]
gi|170123305|gb|EDS92236.1| ribonuclease H [Escherichia albertii TW07627]
Length = 155
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWQWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|304395366|ref|ZP_07377249.1| Ribonuclease H [Pantoea sp. aB]
gi|304356660|gb|EFM21024.1| Ribonuclease H [Pantoea sp. aB]
Length = 155
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY EK S G TTNNRMELMAAI +L AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYGQHEKTFSAGYHLTTNNRMELMAAIVSLEALTQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + HK+ W+K
Sbjct: 63 CDVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLALSTHKIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDVLARTAAEN 143
>gi|220934131|ref|YP_002513030.1| ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
gi|219995441|gb|ACL72043.1| ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
Length = 150
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 100/142 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGAC GNPGPGGWG +LR+KG+E+ + G E ETTNNRMEL AAI AL L P
Sbjct: 5 QRVEIYTDGACRGNPGPGGWGAVLRFKGRERTLKGAEAETTNNRMELTAAIMALETLTRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +QWI W++ GW+T+D K VKN DLWM+ A+A+H+V +W++
Sbjct: 65 CAVDLTTDSQYVKQGLTQWIHGWKRKGWRTADGKPVKNQDLWMRLDAAAARHEVAWHWVR 124
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GH G+ ENE D++A A
Sbjct: 125 GHTGHPENELADQLANEAIDEM 146
>gi|254503050|ref|ZP_05115201.1| RNase H [Labrenzia alexandrii DFL-11]
gi|222439121|gb|EEE45800.1| RNase H [Labrenzia alexandrii DFL-11]
Length = 150
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ V YTDGACSGNPGPGGWGV++R+ E+ + GGE ETTNNRMEL AAI+AL
Sbjct: 1 MSQEN--RVTIYTDGACSGNPGPGGWGVIMRFGEHERELKGGEVETTNNRMELTAAIEAL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC V LYTDS+YV G S+W+ W++ WKT+ K VKN DLW A +H V
Sbjct: 59 NALKRPCVVDLYTDSTYVRSGISEWMYGWKRKNWKTAANKPVKNADLWQALDAARERHDV 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+W+KGHAG+ +NE+ D +AR FK
Sbjct: 119 TWHWVKGHAGHPDNERADELARGGMEPFKK 148
>gi|332188363|ref|ZP_08390088.1| RNase H family protein [Sphingomonas sp. S17]
gi|332011592|gb|EGI53672.1| RNase H family protein [Sphingomonas sp. S17]
Length = 145
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 108/145 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V TDGAC GNPGPGGWG L+R EK +SGGE TTNNRMELMAAI+AL ALK
Sbjct: 1 MTPVEIATDGACKGNPGPGGWGALIRSGAHEKELSGGEALTTNNRMELMAAIEALNALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS YV G ++WI W++NGW+T+DKK VKN +LW +EA+A+H+++ W+
Sbjct: 61 PCAVTLSTDSRYVMDGLTKWIHGWKRNGWRTADKKPVKNAELWQALLEAAARHQIEWKWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ +NE+ D++A +AA +F+
Sbjct: 121 KGHAGHPDNERADKLASDAAETFRK 145
>gi|332288191|ref|YP_004419043.1| ribonuclease H [Gallibacterium anatis UMN179]
gi|330431087|gb|AEC16146.1| ribonuclease H [Gallibacterium anatis UMN179]
Length = 153
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPG GG G++LRYK +K +S G K TTNNRMEL+AAI AL LK
Sbjct: 2 LKKIEIFTDGSCLGNPGAGGIGIVLRYKQHQKEVSQGYKLTTNNRMELLAAITALNLLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LY+DS Y+ KG ++WI+KW++N WKT+ K+ VKN DLW+ +A H+++ W+
Sbjct: 62 PCAVTLYSDSQYLRKGITEWIQKWKKNQWKTAQKQPVKNQDLWIALDQAITPHQIEWQWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 122 KGHAGHPENERCDTLAREAAAN 143
>gi|307545282|ref|YP_003897761.1| ribonuclease H [Halomonas elongata DSM 2581]
gi|307217306|emb|CBV42576.1| ribonuclease H [Halomonas elongata DSM 2581]
Length = 156
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/153 (49%), Positives = 100/153 (65%), Gaps = 4/153 (2%)
Query: 1 MDSKHLR----EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
M+ + + +V YTDGAC GNPGPGGWG LL EK + G E +TTNNRMELMAA
Sbjct: 1 MNDEPPQVALSDVTIYTDGACRGNPGPGGWGALLVSGEHEKALKGAEAKTTNNRMELMAA 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
I AL ALK PC+V L+TDS Y+ +G ++WI W + WKT+ +K VKN +LW E S
Sbjct: 61 IMALRALKRPCRVALWTDSEYLRRGITEWIHGWIKRDWKTASRKPVKNAELWRDLHEQSK 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+H V+ +W+KGH+G+ NE+ D +A A +
Sbjct: 121 RHSVEWHWVKGHSGHPGNERADALANEAIDEMQ 153
>gi|118590744|ref|ZP_01548145.1| ribonuclease H [Stappia aggregata IAM 12614]
gi|118436720|gb|EAV43360.1| ribonuclease H [Stappia aggregata IAM 12614]
Length = 156
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/147 (55%), Positives = 102/147 (69%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ V YTDGACSGNPGPGGWGV+LR+ EK + GGE ETTNNRMELMAAI+AL AL
Sbjct: 3 ENTNRVTIYTDGACSGNPGPGGWGVILRFGEHEKELCGGEAETTNNRMELMAAIEALNAL 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K PC V LYTDS+YV G +W+ W++ W+T+ K VKN DLW A +H V +
Sbjct: 63 KRPCAVDLYTDSTYVRSGIKEWMYGWKRKNWRTAANKPVKNADLWQALDAAKERHDVTWH 122
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ +NE+ D +AR +KN
Sbjct: 123 WVKGHAGHPDNERADELARGGMAPYKN 149
>gi|325002635|ref|ZP_08123747.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Pseudonocardia sp. P1]
Length = 872
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT-NNRMELMAAIKALTALKYPC 67
V +TDGAC NPGPGGWG +LRY E+ + GGE TT NNRMEL A I+AL AL
Sbjct: 5 VEIFTDGACVPNPGPGGWGAVLRYGEHERELHGGEPTTTTNNRMELTAPIRALEALTRHS 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+YV G +QW+ +W+ GW+T+ + VKN DLW + A +H V +W+KG
Sbjct: 65 VVHLHTDSTYVRNGITQWLPRWKTRGWRTAAGEPVKNDDLWRELDAAVRRHDVTWFWVKG 124
Query: 128 HAGNQENEKVDRIARNA 144
H+G+ ENE+ DR+A
Sbjct: 125 HSGHPENERADRLAAQG 141
>gi|157147190|ref|YP_001454509.1| ribonuclease H [Citrobacter koseri ATCC BAA-895]
gi|189043686|sp|A8AKR0|RNH_CITK8 RecName: Full=Ribonuclease H; Short=RNase H
gi|157084395|gb|ABV14073.1| hypothetical protein CKO_02969 [Citrobacter koseri ATCC BAA-895]
Length = 155
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYSLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|94311146|ref|YP_584356.1| ribonuclease H [Cupriavidus metallidurans CH34]
gi|122987906|sp|Q1LL89|RNH_RALME RecName: Full=Ribonuclease H; Short=RNase H
gi|93354998|gb|ABF09087.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Cupriavidus
metallidurans CH34]
Length = 145
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 79/143 (55%), Positives = 97/143 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPGPGGWG +L G EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MQEVTIYSDGACKGNPGPGGWGAVLVAGGHEKELFGGESPTTNNRMELMAVIEALRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +YTDS YV KG S+WI W+ GWKT+DKK VKN DLW EA H++ +W+
Sbjct: 61 PCIVNIYTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ D +A S
Sbjct: 121 RGHNGHPGNERADALANRGVASI 143
>gi|144898458|emb|CAM75322.1| Ribonuclease HI [Magnetospirillum gryphiswaldense MSR-1]
Length = 147
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 82/139 (58%), Positives = 101/139 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG +LRYKG EK + GGE TTNNRME+MAAI AL L C
Sbjct: 4 RVEIFTDGACSGNPGPGGWGAILRYKGVEKELCGGENPTTNNRMEMMAAIMALETLSRSC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS YV KG ++W+K W+ GWKT+DKK VKN DLW + A A+H++ W+KG
Sbjct: 64 PVTLYTDSQYVMKGMTEWLKGWKARGWKTADKKPVKNDDLWQRLDAACARHQITWQWVKG 123
Query: 128 HAGNQENEKVDRIARNAAV 146
HAG+ ENE+ D++AR+
Sbjct: 124 HAGHPENERADQLARDGIK 142
>gi|167470220|ref|ZP_02334924.1| RNase H [Yersinia pestis FV-1]
Length = 154
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V + DG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL P
Sbjct: 3 KQVEVFADGSCLGNPGPGGYGAILRYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTSP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+D+K V+N+DLW + A H + W+K
Sbjct: 63 CEVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAIQSHTIQWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR A S
Sbjct: 123 GHAGHPENERCDELARQGANS 143
>gi|145631631|ref|ZP_01787396.1| ribonuclease H [Haemophilus influenzae R3021]
gi|144982765|gb|EDJ90294.1| ribonuclease H [Haemophilus influenzae R3021]
Length = 174
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWKSLDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 143 GHAGHRENEICDELAKKGAEN 163
>gi|17987740|ref|NP_540374.1| ribonuclease H [Brucella melitensis bv. 1 str. 16M]
gi|23501378|ref|NP_697505.1| ribonuclease H [Brucella suis 1330]
gi|62289458|ref|YP_221251.1| ribonuclease H [Brucella abortus bv. 1 str. 9-941]
gi|82699384|ref|YP_413958.1| ribonuclease H [Brucella melitensis biovar Abortus 2308]
gi|148559858|ref|YP_001258494.1| ribonuclease H [Brucella ovis ATCC 25840]
gi|161618448|ref|YP_001592335.1| ribonuclease H [Brucella canis ATCC 23365]
gi|163842758|ref|YP_001627162.1| ribonuclease H [Brucella suis ATCC 23445]
gi|189023707|ref|YP_001934475.1| ribonuclease H [Brucella abortus S19]
gi|225626982|ref|ZP_03785021.1| Ribonuclease H [Brucella ceti str. Cudo]
gi|225852013|ref|YP_002732246.1| ribonuclease H [Brucella melitensis ATCC 23457]
gi|237814945|ref|ZP_04593943.1| Ribonuclease H [Brucella abortus str. 2308 A]
gi|254688769|ref|ZP_05152023.1| ribonuclease H [Brucella abortus bv. 6 str. 870]
gi|254693253|ref|ZP_05155081.1| ribonuclease H [Brucella abortus bv. 3 str. Tulya]
gi|254696899|ref|ZP_05158727.1| ribonuclease H [Brucella abortus bv. 2 str. 86/8/59]
gi|254701280|ref|ZP_05163108.1| ribonuclease H [Brucella suis bv. 5 str. 513]
gi|254703826|ref|ZP_05165654.1| ribonuclease H [Brucella suis bv. 3 str. 686]
gi|254707795|ref|ZP_05169623.1| ribonuclease H [Brucella pinnipedialis M163/99/10]
gi|254709621|ref|ZP_05171432.1| ribonuclease H [Brucella pinnipedialis B2/94]
gi|254712963|ref|ZP_05174774.1| ribonuclease H [Brucella ceti M644/93/1]
gi|254716683|ref|ZP_05178494.1| ribonuclease H [Brucella ceti M13/05/1]
gi|254718651|ref|ZP_05180462.1| ribonuclease H [Brucella sp. 83/13]
gi|254729802|ref|ZP_05188380.1| ribonuclease H [Brucella abortus bv. 4 str. 292]
gi|256031114|ref|ZP_05444728.1| ribonuclease H [Brucella pinnipedialis M292/94/1]
gi|256044191|ref|ZP_05447098.1| ribonuclease H [Brucella melitensis bv. 1 str. Rev.1]
gi|256060611|ref|ZP_05450777.1| ribonuclease H [Brucella neotomae 5K33]
gi|256113006|ref|ZP_05453903.1| ribonuclease H [Brucella melitensis bv. 3 str. Ether]
gi|256159187|ref|ZP_05457000.1| ribonuclease H [Brucella ceti M490/95/1]
gi|256254517|ref|ZP_05460053.1| ribonuclease H [Brucella ceti B1/94]
gi|256257016|ref|ZP_05462552.1| ribonuclease H [Brucella abortus bv. 9 str. C68]
gi|256264482|ref|ZP_05467014.1| ribonuclease HI [Brucella melitensis bv. 2 str. 63/9]
gi|256368930|ref|YP_003106436.1| ribonuclease H [Brucella microti CCM 4915]
gi|260168245|ref|ZP_05755056.1| ribonuclease H [Brucella sp. F5/99]
gi|260545789|ref|ZP_05821530.1| ribonuclease HI [Brucella abortus NCTC 8038]
gi|260563550|ref|ZP_05834036.1| ribonuclease HI [Brucella melitensis bv. 1 str. 16M]
gi|260566920|ref|ZP_05837390.1| ribonuclease HI [Brucella suis bv. 4 str. 40]
gi|260754255|ref|ZP_05866603.1| ribonuclease HI [Brucella abortus bv. 6 str. 870]
gi|260757475|ref|ZP_05869823.1| ribonuclease HI [Brucella abortus bv. 4 str. 292]
gi|260761300|ref|ZP_05873643.1| ribonuclease HI [Brucella abortus bv. 2 str. 86/8/59]
gi|260883280|ref|ZP_05894894.1| ribonuclease HI [Brucella abortus bv. 9 str. C68]
gi|261213502|ref|ZP_05927783.1| ribonuclease HI [Brucella abortus bv. 3 str. Tulya]
gi|261218488|ref|ZP_05932769.1| ribonuclease HI [Brucella ceti M13/05/1]
gi|261221694|ref|ZP_05935975.1| ribonuclease HI [Brucella ceti B1/94]
gi|261315281|ref|ZP_05954478.1| ribonuclease HI [Brucella pinnipedialis M163/99/10]
gi|261317153|ref|ZP_05956350.1| ribonuclease HI [Brucella pinnipedialis B2/94]
gi|261320662|ref|ZP_05959859.1| ribonuclease HI [Brucella ceti M644/93/1]
gi|261324607|ref|ZP_05963804.1| ribonuclease HI [Brucella neotomae 5K33]
gi|261751821|ref|ZP_05995530.1| ribonuclease HI [Brucella suis bv. 5 str. 513]
gi|261754477|ref|ZP_05998186.1| ribonuclease HI [Brucella suis bv. 3 str. 686]
gi|261757708|ref|ZP_06001417.1| ribonuclease HI [Brucella sp. F5/99]
gi|265983632|ref|ZP_06096367.1| ribonuclease HI [Brucella sp. 83/13]
gi|265988191|ref|ZP_06100748.1| ribonuclease HI [Brucella pinnipedialis M292/94/1]
gi|265990606|ref|ZP_06103163.1| ribonuclease HI [Brucella melitensis bv. 1 str. Rev.1]
gi|265994438|ref|ZP_06106995.1| ribonuclease HI [Brucella melitensis bv. 3 str. Ether]
gi|265997656|ref|ZP_06110213.1| ribonuclease HI [Brucella ceti M490/95/1]
gi|294851853|ref|ZP_06792526.1| ribonuclease HI [Brucella sp. NVSL 07-0026]
gi|297247871|ref|ZP_06931589.1| ribonuclease HI [Brucella abortus bv. 5 str. B3196]
gi|306839828|ref|ZP_07472626.1| ribonuclease H [Brucella sp. NF 2653]
gi|306842239|ref|ZP_07474902.1| ribonuclease H [Brucella sp. BO2]
gi|306845105|ref|ZP_07477685.1| ribonuclease H [Brucella sp. BO1]
gi|54039246|sp|P66674|RNH_BRUSU RecName: Full=Ribonuclease HI; Short=RNase HI
gi|54042000|sp|P66673|RNH_BRUME RecName: Full=Ribonuclease HI; Short=RNase HI
gi|81309451|sp|Q57EP4|RNH_BRUAB RecName: Full=Ribonuclease H; Short=RNase H
gi|123740900|sp|Q2YMI3|RNH_BRUA2 RecName: Full=Ribonuclease H; Short=RNase H
gi|187611352|sp|A5VP47|RNH_BRUO2 RecName: Full=Ribonuclease H; Short=RNase H
gi|187611353|sp|B0CKG2|RNH_BRUSI RecName: Full=Ribonuclease H; Short=RNase H
gi|17983460|gb|AAL52638.1| ribonuclease hi [Brucella melitensis bv. 1 str. 16M]
gi|23347273|gb|AAN29420.1| ribonuclease H [Brucella suis 1330]
gi|62195590|gb|AAX73890.1| RnhA, ribonuclease H [Brucella abortus bv. 1 str. 9-941]
gi|82615485|emb|CAJ10459.1| RNase H [Brucella melitensis biovar Abortus 2308]
gi|148371115|gb|ABQ61094.1| RNase H [Brucella ovis ATCC 25840]
gi|161335259|gb|ABX61564.1| ribonuclease H [Brucella canis ATCC 23365]
gi|163673481|gb|ABY37592.1| ribonuclease H [Brucella suis ATCC 23445]
gi|189019279|gb|ACD72001.1| RNase H [Brucella abortus S19]
gi|225618639|gb|EEH15682.1| Ribonuclease H [Brucella ceti str. Cudo]
gi|225640378|gb|ACO00292.1| Ribonuclease H [Brucella melitensis ATCC 23457]
gi|237789782|gb|EEP63992.1| Ribonuclease H [Brucella abortus str. 2308 A]
gi|255999088|gb|ACU47487.1| ribonuclease H [Brucella microti CCM 4915]
gi|260097196|gb|EEW81071.1| ribonuclease HI [Brucella abortus NCTC 8038]
gi|260153566|gb|EEW88658.1| ribonuclease HI [Brucella melitensis bv. 1 str. 16M]
gi|260156438|gb|EEW91518.1| ribonuclease HI [Brucella suis bv. 4 str. 40]
gi|260667793|gb|EEX54733.1| ribonuclease HI [Brucella abortus bv. 4 str. 292]
gi|260671732|gb|EEX58553.1| ribonuclease HI [Brucella abortus bv. 2 str. 86/8/59]
gi|260674363|gb|EEX61184.1| ribonuclease HI [Brucella abortus bv. 6 str. 870]
gi|260872808|gb|EEX79877.1| ribonuclease HI [Brucella abortus bv. 9 str. C68]
gi|260915109|gb|EEX81970.1| ribonuclease HI [Brucella abortus bv. 3 str. Tulya]
gi|260920278|gb|EEX86931.1| ribonuclease HI [Brucella ceti B1/94]
gi|260923577|gb|EEX90145.1| ribonuclease HI [Brucella ceti M13/05/1]
gi|261293352|gb|EEX96848.1| ribonuclease HI [Brucella ceti M644/93/1]
gi|261296376|gb|EEX99872.1| ribonuclease HI [Brucella pinnipedialis B2/94]
gi|261300587|gb|EEY04084.1| ribonuclease HI [Brucella neotomae 5K33]
gi|261304307|gb|EEY07804.1| ribonuclease HI [Brucella pinnipedialis M163/99/10]
gi|261737692|gb|EEY25688.1| ribonuclease HI [Brucella sp. F5/99]
gi|261741574|gb|EEY29500.1| ribonuclease HI [Brucella suis bv. 5 str. 513]
gi|261744230|gb|EEY32156.1| ribonuclease HI [Brucella suis bv. 3 str. 686]
gi|262552124|gb|EEZ08114.1| ribonuclease HI [Brucella ceti M490/95/1]
gi|262765551|gb|EEZ11340.1| ribonuclease HI [Brucella melitensis bv. 3 str. Ether]
gi|263001390|gb|EEZ13965.1| ribonuclease HI [Brucella melitensis bv. 1 str. Rev.1]
gi|263094813|gb|EEZ18551.1| ribonuclease HI [Brucella melitensis bv. 2 str. 63/9]
gi|264660388|gb|EEZ30649.1| ribonuclease HI [Brucella pinnipedialis M292/94/1]
gi|264662224|gb|EEZ32485.1| ribonuclease HI [Brucella sp. 83/13]
gi|294820442|gb|EFG37441.1| ribonuclease HI [Brucella sp. NVSL 07-0026]
gi|297175040|gb|EFH34387.1| ribonuclease HI [Brucella abortus bv. 5 str. B3196]
gi|306274520|gb|EFM56315.1| ribonuclease H [Brucella sp. BO1]
gi|306287619|gb|EFM59066.1| ribonuclease H [Brucella sp. BO2]
gi|306405014|gb|EFM61295.1| ribonuclease H [Brucella sp. NF 2653]
gi|326408507|gb|ADZ65572.1| RNase H [Brucella melitensis M28]
gi|326538224|gb|ADZ86439.1| ribonuclease H [Brucella melitensis M5-90]
Length = 154
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 91/144 (63%), Positives = 107/144 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + AYTDGACSGNPGPGGWG LLR+ G EK + GGE ETTNNRMELMAAI AL+ALK
Sbjct: 1 MKRIEAYTDGACSGNPGPGGWGALLRWNGNEKELKGGEAETTNNRMELMAAISALSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G S WI+ W++NGWKT+ KK VKN +LW EA HKV +WI
Sbjct: 61 PCEVDLYTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKAHKVTWHWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARAGMEPFK 144
>gi|168261339|ref|ZP_02683312.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|205350040|gb|EDZ36671.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
Length = 155
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT+++K VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAERKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|107022360|ref|YP_620687.1| ribonuclease H [Burkholderia cenocepacia AU 1054]
gi|116689307|ref|YP_834930.1| ribonuclease H [Burkholderia cenocepacia HI2424]
gi|170732606|ref|YP_001764553.1| ribonuclease H [Burkholderia cenocepacia MC0-3]
gi|254245770|ref|ZP_04939091.1| Ribonuclease H [Burkholderia cenocepacia PC184]
gi|105892549|gb|ABF75714.1| RNase HI [Burkholderia cenocepacia AU 1054]
gi|116647396|gb|ABK08037.1| RNase HI [Burkholderia cenocepacia HI2424]
gi|124870546|gb|EAY62262.1| Ribonuclease H [Burkholderia cenocepacia PC184]
gi|169815848|gb|ACA90431.1| Ribonuclease H [Burkholderia cenocepacia MC0-3]
Length = 147
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGSQEKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+++ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHEIEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|152968804|ref|YP_001333913.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|262044051|ref|ZP_06017131.1| ribonuclease H [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|330005756|ref|ZP_08305368.1| ribonuclease HI [Klebsiella sp. MS 92-3]
gi|189043699|sp|A6T512|RNH_KLEP7 RecName: Full=Ribonuclease H; Short=RNase H
gi|150953653|gb|ABR75683.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|259038623|gb|EEW39814.1| ribonuclease H [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|328536124|gb|EGF62512.1| ribonuclease HI [Klebsiella sp. MS 92-3]
Length = 155
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 80/140 (57%), Positives = 104/140 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY+ EK S G + TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QHK+ W+
Sbjct: 62 HCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>gi|260581299|ref|ZP_05849116.1| ribonuclease HI [Haemophilus influenzae RdAW]
gi|260092048|gb|EEW75994.1| ribonuclease HI [Haemophilus influenzae RdAW]
Length = 174
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 143 GHAGHRENEICDELAKKGAEN 163
>gi|332095032|gb|EGJ00067.1| ribonuclease H [Shigella boydii 5216-82]
Length = 155
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ +NE+ D +AR AA++
Sbjct: 122 KGHAGHPKNERCDELARAAAMN 143
>gi|16759249|ref|NP_454866.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16763646|ref|NP_459261.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142976|ref|NP_806318.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56414617|ref|YP_151692.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161504624|ref|YP_001571736.1| ribonuclease H [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|161615576|ref|YP_001589541.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|162139612|ref|YP_215246.2| ribonuclease H [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|167995092|ref|ZP_02576182.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168232194|ref|ZP_02657252.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238648|ref|ZP_02663706.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168239997|ref|ZP_02664929.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168465316|ref|ZP_02699198.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194442619|ref|YP_002039497.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194447817|ref|YP_002044247.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194468903|ref|ZP_03074887.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194736767|ref|YP_002113280.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197247626|ref|YP_002145263.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197264871|ref|ZP_03164945.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197363545|ref|YP_002143182.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198242273|ref|YP_002214219.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|200390417|ref|ZP_03217028.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927370|ref|ZP_03218572.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205351594|ref|YP_002225395.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855775|ref|YP_002242426.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213162307|ref|ZP_03348017.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213428416|ref|ZP_03361166.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213612767|ref|ZP_03370593.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213646368|ref|ZP_03376421.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213852643|ref|ZP_03382175.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|238913717|ref|ZP_04657554.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289828783|ref|ZP_06546542.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|61233311|sp|P0A2B9|RNH_SALTY RecName: Full=Ribonuclease HI; Short=RNase HI; AltName:
Full=Ribonuclease H; Short=RNase H
gi|61233317|sp|P0A2C0|RNH_SALTI RecName: Full=Ribonuclease HI; Short=RNase HI
gi|81821397|sp|Q5PFD8|RNH_SALPA RecName: Full=Ribonuclease H; Short=RNase H
gi|187611424|sp|Q57SZ6|RNH_SALCH RecName: Full=Ribonuclease H; Short=RNase H
gi|189043708|sp|A9MPF1|RNH_SALAR RecName: Full=Ribonuclease H; Short=RNase H
gi|189043709|sp|A9MZ19|RNH_SALPB RecName: Full=Ribonuclease H; Short=RNase H
gi|238689766|sp|B4TYH0|RNH_SALSV RecName: Full=Ribonuclease H; Short=RNase H
gi|238689949|sp|B5BDW5|RNH_SALPK RecName: Full=Ribonuclease H; Short=RNase H
gi|238690067|sp|B5F8X2|RNH_SALA4 RecName: Full=Ribonuclease H; Short=RNase H
gi|238690314|sp|B5FJ58|RNH_SALDC RecName: Full=Ribonuclease H; Short=RNase H
gi|238690459|sp|B5R449|RNH_SALEP RecName: Full=Ribonuclease H; Short=RNase H
gi|238690469|sp|B5R5L3|RNH_SALG2 RecName: Full=Ribonuclease H; Short=RNase H
gi|238690681|sp|B4TK85|RNH_SALHS RecName: Full=Ribonuclease H; Short=RNase H
gi|238693525|sp|B4SV39|RNH_SALNS RecName: Full=Ribonuclease H; Short=RNase H
gi|25289240|pir||AE0534 ribonuclease H [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|48822|emb|CAA40447.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16418763|gb|AAL19220.1| RNase HI [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16501540|emb|CAD08717.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi]
gi|29138608|gb|AAO70178.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56128874|gb|AAV78380.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|160865971|gb|ABX22594.1| hypothetical protein SARI_02739 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161364940|gb|ABX68708.1| hypothetical protein SPAB_03351 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401282|gb|ACF61504.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406121|gb|ACF66340.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194455267|gb|EDX44106.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194712269|gb|ACF91490.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195631809|gb|EDX50329.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197095022|emb|CAR60568.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197211329|gb|ACH48726.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197243126|gb|EDY25746.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197288562|gb|EDY27939.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936789|gb|ACH74122.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|199602862|gb|EDZ01408.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204324035|gb|EDZ09230.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205271375|emb|CAR36168.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205327157|gb|EDZ13921.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205333469|gb|EDZ20233.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205340000|gb|EDZ26764.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|206707578|emb|CAR31852.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261245488|emb|CBG23278.1| RNase H [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267991950|gb|ACY86835.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156884|emb|CBW16360.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911228|dbj|BAJ35202.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224917|gb|EFX49978.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614543|gb|EFY11472.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620061|gb|EFY16933.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623356|gb|EFY20195.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629346|gb|EFY26125.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632066|gb|EFY28820.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637196|gb|EFY33898.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640309|gb|EFY36969.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645924|gb|EFY42444.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652377|gb|EFY48731.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322652581|gb|EFY48931.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660391|gb|EFY56627.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664544|gb|EFY60737.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669403|gb|EFY65553.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670949|gb|EFY67082.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678812|gb|EFY74867.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681841|gb|EFY77866.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687967|gb|EFY83933.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322713280|gb|EFZ04851.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323128578|gb|ADX16008.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323194321|gb|EFZ79516.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197737|gb|EFZ82869.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203467|gb|EFZ88492.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206788|gb|EFZ91741.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213393|gb|EFZ98194.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214686|gb|EFZ99437.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221461|gb|EGA05877.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323226221|gb|EGA10437.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229991|gb|EGA14111.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233730|gb|EGA17819.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238576|gb|EGA22634.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244264|gb|EGA28273.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246425|gb|EGA30408.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323258047|gb|EGA41726.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259855|gb|EGA43486.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265130|gb|EGA48629.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272693|gb|EGA56100.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326621963|gb|EGE28308.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|326626622|gb|EGE32965.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332987209|gb|AEF06192.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 155
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|53805083|ref|YP_113229.1| RNase H [Methylococcus capsulatus str. Bath]
gi|81823697|sp|Q60AW8|RNH_METCA RecName: Full=Ribonuclease H; Short=RNase H
gi|53758844|gb|AAU93135.1| RNase H [Methylococcus capsulatus str. Bath]
Length = 155
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 105/146 (71%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S+ V+AYTDGAC GNPGPGGWGVLLRY K + I GGE+ETTNNRMELMAAI+AL
Sbjct: 2 SETEPTVYAYTDGACRGNPGPGGWGVLLRYGSKTREIYGGERETTNNRMELMAAIRALET 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L PCKV + TDS YV KG ++W+ +W++ GWKT+ + VKNIDLW + ++A +H+V
Sbjct: 62 LSRPCKVKIVTDSQYVKKGITEWVAQWEKRGWKTAGRSPVKNIDLWQRLIQAEQRHQVSW 121
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIKGH+G+ ENE DR+A
Sbjct: 122 GWIKGHSGHPENEAADRLANRGIDEL 147
>gi|119898346|ref|YP_933559.1| ribonuclease H [Azoarcus sp. BH72]
gi|119670759|emb|CAL94672.1| Ribonuclease H [Azoarcus sp. BH72]
Length = 152
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 80/146 (54%), Positives = 102/146 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGACSGNPGPGGWG +LR G EK I GGE +TTNNRMEL+A I+AL ALK
Sbjct: 1 MEEVDIYTDGACSGNPGPGGWGAILRSNGHEKEIWGGEPQTTNNRMELIAVIRALEALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P ++TDS YV KG S+WI W+ GWKT+ K+ VKN DLW E + +H+V W+
Sbjct: 61 PVAARVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWRTLDEVAGRHQVKWLWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GHAG+ ENE+ D +AR A + + +
Sbjct: 121 RGHAGHVENERADALARRGAEAARKQ 146
>gi|239993484|ref|ZP_04714008.1| ribonuclease H [Alteromonas macleodii ATCC 27126]
Length = 158
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +H YTDG+C GNPGPGG+G +L YK K +S G TTNNRMEL+A I+AL +L P
Sbjct: 6 KTIHIYTDGSCLGNPGPGGYGAVLIYKQHRKELSDGFAHTTNNRMELLAPIEALNSLNEP 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV G +QWI W++NGW+T+DKK VKN DLW + EA +HK++ +W+K
Sbjct: 66 CNVELTTDSQYVKNGINQWIHNWRKNGWRTADKKPVKNADLWQRLDEAVKKHKINWHWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE+ D +AR AA +
Sbjct: 126 GHSGHPENERCDDLARGAAEA 146
>gi|160286375|pdb|2Z1H|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT92KQ105KQ113RQ115KN143KT145K)
Length = 155
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 82/144 (56%), Positives = 105/144 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKRVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWK +DKK VKN+DLW + A +HK+ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGRHKIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR AA+ K
Sbjct: 122 KGHAGHPENERCDELARAAAMKPK 145
>gi|88813348|ref|ZP_01128586.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
gi|88789406|gb|EAR20535.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
Length = 147
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 101/143 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V YTDGAC GNPGPGGWG +LRY G EK + GG +TTNNRMEL AAI+AL +LK
Sbjct: 1 MAPVEIYTDGACRGNPGPGGWGAVLRYGGHEKSLCGGATQTTNNRMELTAAIQALESLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS Y+ +G ++W+ W++ GW+T+++K VKN DLW + +A+H+VD W+
Sbjct: 61 PCRVVLTTDSQYLRRGITEWLPNWKRRGWRTAERKPVKNADLWQRLDMLAARHEVDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ DR+A
Sbjct: 121 RGHNGHPGNEQADRLANQGIDEM 143
>gi|292493432|ref|YP_003528871.1| ribonuclease H [Nitrosococcus halophilus Nc4]
gi|291582027|gb|ADE16484.1| ribonuclease H [Nitrosococcus halophilus Nc4]
Length = 147
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 105/142 (73%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPGPGGWG LLRY+G+EK +SG E TTNNRMELMAAI+AL +LK PC+
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLRYRGREKTLSGMETRTTNNRMELMAAIQALESLKRPCR 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS Y+ +G + W+ +W+Q GWKT++++ VKN DLW + A A H+V+ +W++GH
Sbjct: 65 VRLTTDSQYLRQGITCWMPRWKQRGWKTANRQPVKNRDLWQRLERAVAPHQVEWFWVRGH 124
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
G+ ENE+ D +AR A +
Sbjct: 125 EGHPENERADALARKAITELEE 146
>gi|121607587|ref|YP_995394.1| ribonuclease H [Verminephrobacter eiseniae EF01-2]
gi|187611401|sp|A1WFG9|RNH_VEREI RecName: Full=Ribonuclease H; Short=RNase H
gi|121552227|gb|ABM56376.1| ribonuclease H [Verminephrobacter eiseniae EF01-2]
Length = 155
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGVLLR EK + GG TTNNRMELMA I+AL+AL+
Sbjct: 1 MNQVEIYTDGACKGNPGPGGWGVLLRSGPTEKALFGGALGTTNNRMELMAVIEALSALQR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V LY DS YV KG ++WI W+ GW+T+ ++ VKN+DLW + ++ H+++
Sbjct: 61 PCAVTLYLDSEYVRKGITEWIHGWKAKGWRTAARQPVKNVDLWQRLDALVSTGGHRIEWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGH+G+ NE+ D +A
Sbjct: 121 WVKGHSGDPGNERADALANRGVDQA 145
>gi|33152311|ref|NP_873664.1| ribonuclease H [Haemophilus ducreyi 35000HP]
gi|38372406|sp|Q7VM15|RNH_HAEDU RecName: Full=Ribonuclease HI; Short=RNase HI
gi|33148534|gb|AAP96053.1| ribonuclease H [Haemophilus ducreyi 35000HP]
Length = 153
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 97/142 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V+ +TDG+C GNPGPGG GV+LRY +K +S G +TTNNRMEL A I+ L+ LK
Sbjct: 1 MKSVNIFTDGSCLGNPGPGGIGVVLRYNQHQKKVSQGYFQTTNNRMELRAVIEGLSMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DS Y+ G ++WI KW+++ WKT++ K VKN DLW+ E H ++ W+
Sbjct: 61 ACNVTLYSDSQYMKNGITKWIFKWKKSNWKTANGKAVKNKDLWLLLDEKIQIHYIEWKWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE D +A+ A +
Sbjct: 121 KGHSGHYENEICDELAKLGANN 142
>gi|290476065|ref|YP_003468962.1| RNase HI [Xenorhabdus bovienii SS-2004]
gi|289175395|emb|CBJ82198.1| RNase HI, degrades RNA of DNA-RNA hybrids [Xenorhabdus bovienii
SS-2004]
Length = 156
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRY+ EK +S G TTNNRMELMAAI L +L P
Sbjct: 3 KKVEIFTDGSCLGNPGPGGYGVVLRYQQHEKTLSKGYFRTTNNRMELMAAIAGLESLTCP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWK +DK V N+DLW + +A A H +D W+K
Sbjct: 63 CNVILTTDSQYVRQGITQWIHNWKKRGWKKADKSPVINVDLWQRLDQAIADHDIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE+ D +AR AA S
Sbjct: 123 GHAGHRENEQCDELARTAANS 143
>gi|92114065|ref|YP_573993.1| ribonuclease H [Chromohalobacter salexigens DSM 3043]
gi|123387438|sp|Q1QW64|RNH_CHRSD RecName: Full=Ribonuclease H; Short=RNase H
gi|91797155|gb|ABE59294.1| ribonuclease H [Chromohalobacter salexigens DSM 3043]
Length = 164
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 98/144 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V YTDGAC GNPGPGGWG +LRY EK + GGE TTNNRMELMAAI+AL L
Sbjct: 10 MPRVTIYTDGACRGNPGPGGWGAVLRYGQHEKTLKGGEAVTTNNRMELMAAIQALRTLTR 69
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L+TDS Y+ KG ++WI W + GWKT+ K+ VKN +LW + + + +H+++ +W+
Sbjct: 70 ACDVALWTDSEYLRKGITEWIHGWVKRGWKTAAKQPVKNAELWRELLAETQRHRIEWHWV 129
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+G++ NE D +A A +
Sbjct: 130 KGHSGHEGNELADTLANAATDEIQ 153
>gi|87119405|ref|ZP_01075303.1| ribonuclease HI [Marinomonas sp. MED121]
gi|86165796|gb|EAQ67063.1| ribonuclease HI [Marinomonas sp. MED121]
Length = 158
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 96/149 (64%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ ++ V YTDGAC GNPGPGGWG + + EK + GGE +TTNNRMEL AI+ L
Sbjct: 10 RDEIVKHVIIYTDGACKGNPGPGGWGAWITFGEHEKRLCGGENDTTNNRMELSGAIEGLK 69
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL PCKV LYTDSSYV KG +QW+ W++ GWKT+ K+ VKN DLW E +H ++
Sbjct: 70 ALTEPCKVTLYTDSSYVQKGITQWLAGWKKKGWKTASKQPVKNKDLWQALDEECQRHDIE 129
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG + NE D +A ++
Sbjct: 130 WKWVKGHAGIKGNEIADELANLGIEKIRD 158
>gi|212709215|ref|ZP_03317343.1| hypothetical protein PROVALCAL_00249 [Providencia alcalifaciens DSM
30120]
gi|212688127|gb|EEB47655.1| hypothetical protein PROVALCAL_00249 [Providencia alcalifaciens DSM
30120]
Length = 156
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRY+ EK +S G TTNNRMEL+AAI AL +L P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYQQHEKTLSDGFFLTTNNRMELLAAIIALESLTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WK +DK V N+DLW + +A +H +D W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKRRQWKKADKSPVVNVDLWKRLDQAITRHTIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENEK D +AR AA +
Sbjct: 123 GHAGHAENEKCDELARAAANA 143
>gi|71736245|ref|YP_273949.1| ribonuclease H [Pseudomonas syringae pv. phaseolicola 1448A]
gi|123747674|sp|Q48KX6|RNH_PSE14 RecName: Full=Ribonuclease H; Short=RNase H
gi|71556798|gb|AAZ36009.1| ribonuclease HI [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 149
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 93/143 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL +KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVFKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHNVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|319762433|ref|YP_004126370.1| ribonuclease h [Alicycliphilus denitrificans BC]
gi|317116994|gb|ADU99482.1| ribonuclease H [Alicycliphilus denitrificans BC]
Length = 148
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGV+LR EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGVVLRSGELEKELFGGELGTTNNRMELMAVIQALAALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC+V LY DS YV +G ++WI W++ GW+T+ + VKN++LW + E A H+++ +
Sbjct: 61 PCQVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHKAGHRIEWH 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ NE+ D +A
Sbjct: 121 WVKGHAGDPGNERADALANKGVEQA 145
>gi|260583277|ref|ZP_05851053.1| ribonuclease HI [Haemophilus influenzae NT127]
gi|260093684|gb|EEW77596.1| ribonuclease HI [Haemophilus influenzae NT127]
Length = 174
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 143 GHAGHRENEICDELAKKGAEN 163
>gi|329123856|ref|ZP_08252413.1| ribonuclease HI [Haemophilus aegyptius ATCC 11116]
gi|327468819|gb|EGF14293.1| ribonuclease HI [Haemophilus aegyptius ATCC 11116]
Length = 174
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 143 GHAGHRENEICDELAKKGAEN 163
>gi|271501672|ref|YP_003334698.1| Ribonuclease H [Dickeya dadantii Ech586]
gi|270345227|gb|ACZ77992.1| Ribonuclease H [Dickeya dadantii Ech586]
Length = 154
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 80/141 (56%), Positives = 102/141 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G LLRYK EK +S G + TTNNRMELMAAI AL +L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSAGYRLTTNNRMELMAAIVALESLTS 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV +G + WI W++ GWKT++KK VKNIDLW + A +H + W+
Sbjct: 62 PCEVTLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNIDLWQRLDVAIQRHTLHWMWV 121
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARQAAN 142
>gi|301060000|ref|ZP_07200874.1| ribonuclease HI [delta proteobacterium NaphS2]
gi|300445879|gb|EFK09770.1| ribonuclease HI [delta proteobacterium NaphS2]
Length = 157
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/150 (51%), Positives = 101/150 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V +TDGACSGNPGPGG+G +LRY K ISG E +TTNNRME++A I+AL
Sbjct: 1 MKGGSAQTVEIFTDGACSGNPGPGGYGSVLRYGKVTKEISGCEPQTTNNRMEMIAVIEAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PCK+++ TDS YV KG + WI W +N WK S KK V N DLW + + S H++
Sbjct: 61 RCLKRPCKIIITTDSQYVMKGMTHWIHGWIKNNWKNSQKKAVLNKDLWQEMLRLSRPHEI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGH G+ ENE+ DR+AR A ++ K+
Sbjct: 121 KWKWVKGHDGHPENERCDRLAREAILNCKS 150
>gi|238026772|ref|YP_002911003.1| RNase H [Burkholderia glumae BGR1]
gi|237875966|gb|ACR28299.1| RNase H [Burkholderia glumae BGR1]
Length = 149
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/147 (52%), Positives = 101/147 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ + YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMEL+A I+AL ALK
Sbjct: 2 TLQLIDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEAGTTNNRMELLAVIRALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + QH+++ W
Sbjct: 62 RPCRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKQLDALVGQHEIEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHAG+ ENE+ D +A S +
Sbjct: 122 VKGHAGHAENERADALANRGVESLSQR 148
>gi|157962224|ref|YP_001502258.1| ribonuclease H [Shewanella pealeana ATCC 700345]
gi|157847224|gb|ABV87723.1| Ribonuclease H [Shewanella pealeana ATCC 700345]
Length = 185
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+G++L+YK + K ++ G TTNNRME++A I AL ALK
Sbjct: 28 LKQISIYTDGSCLGNPGPGGYGIVLKYKKRTKELADGFALTTNNRMEMLAPIIALEALKV 87
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L +DS Y+ +G +QWI W++ GW TS + VKN+DLW + S +H+V+ W+
Sbjct: 88 PCEVILTSDSQYMRQGITQWIHGWKRKGWMTSTNQPVKNVDLWKRLDTVSQRHQVEWRWV 147
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 148 KGHAGHSENERCDDLARQAAEA 169
>gi|239831346|ref|ZP_04679675.1| Ribonuclease H [Ochrobactrum intermedium LMG 3301]
gi|239823613|gb|EEQ95181.1| Ribonuclease H [Ochrobactrum intermedium LMG 3301]
Length = 154
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 87/144 (60%), Positives = 107/144 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + A+TDGACSGNPGPGGWG +LR+ G K + GGE +TTNNRMELMAAI AL+ALK
Sbjct: 1 MKRIEAFTDGACSGNPGPGGWGAILRWNGNVKELKGGEADTTNNRMELMAAISALSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS YV G S WI+ W++NGWKT+ KK VKN +LW EA HKV+ +WI
Sbjct: 61 PCEVDLYTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKPHKVNWHWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARAGMEPFK 144
>gi|242240257|ref|YP_002988438.1| ribonuclease H [Dickeya dadantii Ech703]
gi|242132314|gb|ACS86616.1| Ribonuclease H [Dickeya dadantii Ech703]
Length = 154
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 102/142 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G LLRYK EK +SGG + TTNNRMELMAAI AL L
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSGGYRLTTNNRMELMAAIAALETLTT 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN DLW + A +H + WI
Sbjct: 62 ECEVTLSTDSQYVRQGITQWIHNWKKRGWKTTEKKPVKNADLWQRLDTAVQRHHLHWKWI 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE+ D +A+ AA +
Sbjct: 122 KGHSGHPENERCDVLAKQAANN 143
>gi|288921896|ref|ZP_06416109.1| ribonuclease H [Frankia sp. EUN1f]
gi|288346744|gb|EFC81060.1| ribonuclease H [Frankia sp. EUN1f]
Length = 156
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI+AL AL
Sbjct: 1 MAGVEIFTDGACSGNPGPGGWGAVLRYGTHEKTLYGGEAADTTNNRMELLAAIRALEALT 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P V L+TDS Y+ G S W+ +W++NGW T+DKK VKN DLW + + +H ++ W
Sbjct: 61 RPSAVRLHTDSQYLRNGVSGWLPRWKRNGWLTADKKPVKNADLWQQLDVLAGRHTIEWLW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGHAG+ +NE+ DR+A +
Sbjct: 121 VKGHAGHPDNERADRLANRGMKEAR 145
>gi|170722631|ref|YP_001750319.1| ribonuclease H [Pseudomonas putida W619]
gi|229564315|sp|B1JBN1|RNH_PSEPW RecName: Full=Ribonuclease H; Short=RNase H
gi|169760634|gb|ACA73950.1| ribonuclease H [Pseudomonas putida W619]
Length = 148
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 80/145 (55%), Positives = 101/145 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGAC GNPGPGGWGVLL YKG EK + GGE+ETTNNRMELMAAI+ L ALK
Sbjct: 3 DSVELYTDGACKGNPGPGGWGVLLIYKGVEKELWGGERETTNNRMELMAAIQGLMALKRE 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW + E +HKV W++
Sbjct: 63 CEVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVNRHKVTWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH G+ NE+ D++A + K
Sbjct: 123 GHIGHPGNERADQLANRGVDEVRAK 147
>gi|330825716|ref|YP_004389019.1| ribonuclease H [Alicycliphilus denitrificans K601]
gi|329311088|gb|AEB85503.1| Ribonuclease H [Alicycliphilus denitrificans K601]
Length = 148
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGV+LR EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGVVLRSGELEKELFGGELGTTNNRMELMAVIQALAALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC+V LY DS YV +G ++WI W++ GW+T+ + VKN++LW + E A H+++ +
Sbjct: 61 PCQVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHKAGHRIEWH 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ NE+ D +A
Sbjct: 121 WVKGHAGDPGNERADALANKGVEQA 145
>gi|238897889|ref|YP_002923568.1| RNase HI, degrades RNA of DNA-RNA hybrids [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465646|gb|ACQ67420.1| RNase HI, degrades RNA of DNA-RNA hybrids [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 154
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPG GG+ +LRY+ EKI S G + TTNNRMELMA+I AL ALK
Sbjct: 1 MKQVEIFTDGSCLGNPGAGGYASILRYQQHEKIFSQGYRLTTNNRMELMASIVALQALKS 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L+TDS YV +G +QW+ W++ GWKTS++K VKNIDLW +H+++ W+
Sbjct: 61 PCTVTLFTDSQYVRQGITQWVVHWKKRGWKTSERKEVKNIDLWKALDAEIQKHQINWQWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D++AR AA S
Sbjct: 121 KGHAGHPENERCDKLARLAASS 142
>gi|115351215|ref|YP_773054.1| ribonuclease H [Burkholderia ambifaria AMMD]
gi|171318243|ref|ZP_02907406.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
gi|172060229|ref|YP_001807881.1| ribonuclease H [Burkholderia ambifaria MC40-6]
gi|115281203|gb|ABI86720.1| RNase HI [Burkholderia ambifaria AMMD]
gi|171096587|gb|EDT41481.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
gi|171992746|gb|ACB63665.1| Ribonuclease H [Burkholderia ambifaria MC40-6]
Length = 147
Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 96/142 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGDREKELFGGEPNTTNNRMELMGVIGALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + QH+++ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVVQHEIEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|254464407|ref|ZP_05077818.1| RNase H [Rhodobacterales bacterium Y4I]
gi|206685315|gb|EDZ45797.1| RNase H [Rhodobacterales bacterium Y4I]
Length = 154
Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 87/151 (57%), Positives = 107/151 (70%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVLLR KEK +SGGE ETTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGVLLRAMDGDSIVKEKELSGGEAETTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P + + TDS+YV G + WI W++NGWKTS+KK VKN++LW + EA +HKV
Sbjct: 61 ESLARPSTITVVTDSAYVKNGVTGWIFGWKKNGWKTSNKKPVKNVELWQRLDEAQRRHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR FK K
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKKK 151
>gi|182679289|ref|YP_001833435.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635172|gb|ACB95946.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
Length = 153
Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 104/142 (73%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V YTDGACSGNPGPGGWG +L + EK +SGGE +TTNNRMEL AAI+AL AL PC
Sbjct: 4 RVTIYTDGACSGNPGPGGWGAILMFGQHEKELSGGEAQTTNNRMELTAAIRALEALTRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+Y+ G + WIK W++NGW+T+DKK VKN++LW + + +A H++ +W+KG
Sbjct: 64 AVDLHTDSNYLRGGVTSWIKGWKKNGWRTADKKPVKNVELWQELDQLAASHEIAWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
HAG+ NE+ D +AR F+
Sbjct: 124 HAGHPLNERADALARQGMAPFR 145
>gi|241765318|ref|ZP_04763296.1| ribonuclease H [Acidovorax delafieldii 2AN]
gi|241364999|gb|EER59910.1| ribonuclease H [Acidovorax delafieldii 2AN]
Length = 149
Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ ++ YTDGAC GNPGPGGWG LLR EK + GGE TTNNRMELMA I+AL+ALK
Sbjct: 1 MNQIEIYTDGACKGNPGPGGWGALLRAGATEKELFGGELGTTNNRMELMAVIEALSALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V LY DS YV KG ++WI W+ GW+T+ K+ VKN++LW + +A H++D
Sbjct: 61 PCAVTLYLDSEYVRKGITEWIHGWKARGWRTAAKQPVKNVELWQRLDALVTTAGHRIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W++GH+G+ NE+ D +A
Sbjct: 121 WVRGHSGDPGNERADALANRGVDKA 145
>gi|319793187|ref|YP_004154827.1| ribonuclease h [Variovorax paradoxus EPS]
gi|315595650|gb|ADU36716.1| Ribonuclease H [Variovorax paradoxus EPS]
Length = 149
Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGAC GNPGPGGWG L+ EK + GGE TTNNRMEL A I+ L ALK
Sbjct: 1 MNEVVIYTDGACKGNPGPGGWGAWLKSGATEKELFGGELNTTNNRMELTAVIEGLAALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PCKVLLY DS YV KG ++WI+ W+ GW T+ K+ VKN++LW + + A H ++
Sbjct: 61 PCKVLLYLDSQYVRKGITEWIRGWKAKGWMTASKQPVKNVELWQRLDKLVAEGGHTIEWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+KGH+G+ NE+ D +A +I
Sbjct: 121 WVKGHSGDPGNERADMLANKGVDKALGRI 149
>gi|167587485|ref|ZP_02379873.1| ribonuclease H [Burkholderia ubonensis Bu]
Length = 147
Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELMA I +L ALK
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGDREKEMFGGEPNTTNNRMELMAVIASLEALKRE 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+V+ W+K
Sbjct: 64 CRVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHQVEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|213422427|ref|ZP_03355493.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
Length = 146
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|78065898|ref|YP_368667.1| ribonuclease H [Burkholderia sp. 383]
gi|77966643|gb|ABB08023.1| RNase HI [Burkholderia sp. 383]
Length = 147
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG L+RY KEK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALMRYGDKEKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+V+ W+K
Sbjct: 64 CQVIVHTDSQYVQKGISEWIHGWKKKGWITAAKTPVKNADLWKRLDALVAQHEVEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|30173168|sp|Q8GF77|RNH_PHOLU RecName: Full=Ribonuclease H; Short=RNase H
gi|27479697|gb|AAO17224.1| RnhA [Photorhabdus luminescens]
Length = 156
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GVLLRY+ EK +S G TTNNRMELMAAI L L P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVLLRYQQHEKTLSEGFYRTTNNRMELMAAIIGLETLTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CK++L TDS YV +G +QWI W++ GW+ +DK V N+DLW + +A ++H +D W+K
Sbjct: 63 CKIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHDIDWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE D +AR AA S
Sbjct: 123 GHSGHNENEHCDELARAAANS 143
>gi|325527244|gb|EGD04624.1| ribonuclease H [Burkholderia sp. TJI49]
Length = 147
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 96/142 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRFGDREKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + QH+V+ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWMTAAKTPVKNADLWKRLDALVVQHEVEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|264677772|ref|YP_003277678.1| ribonuclease H [Comamonas testosteroni CNB-2]
gi|299531593|ref|ZP_07044998.1| ribonuclease H [Comamonas testosteroni S44]
gi|262208284|gb|ACY32382.1| ribonuclease H [Comamonas testosteroni CNB-2]
gi|298720309|gb|EFI61261.1| ribonuclease H [Comamonas testosteroni S44]
Length = 149
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWG LL+ +K + GGE TTNNRMEL A I+AL+ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGALLQAGSAQKELFGGELGTTNNRMELKAVIEALSALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V+LY DS YV KG ++WI+ W+ GW T+ K+ VKN++LW + + H++D
Sbjct: 61 PCDVVLYLDSQYVRKGITEWIQGWKAKGWVTASKEPVKNVELWKQLDALVQGSGHRIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ NE+ D +A K
Sbjct: 121 WVKGHAGDPGNERADALANKGVELALKK 148
>gi|209695824|ref|YP_002263754.1| ribonuclease H [Aliivibrio salmonicida LFI1238]
gi|238056784|sp|B6EJV2|RNH_ALISL RecName: Full=Ribonuclease H; Short=RNase H
gi|208009777|emb|CAQ80083.1| Ribonuclease H [Aliivibrio salmonicida LFI1238]
Length = 157
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 107/147 (72%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ +++V +TDG+C GNPGPGG+G+++RYKG EK SGG +TTNNRME++AA+ AL
Sbjct: 1 MITEIMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSGGFNQTTNNRMEMLAAVVAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC V+L TDS YV +G +QWI W++ GWK +DKK V N DLW + + +H V
Sbjct: 61 RNLKEPCIVVLTTDSQYVRQGITQWIHGWKKRGWKKADKKPVVNADLWKQLDAEAERHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
D W+KGHAG++ENE D +AR AA +
Sbjct: 121 DWRWVKGHAGHRENEMCDDLARTAAEN 147
>gi|146343359|ref|YP_001208407.1| ribonuclease H [Bradyrhizobium sp. ORS278]
gi|189043684|sp|A4Z216|RNH_BRASO RecName: Full=Ribonuclease H; Short=RNase H
gi|146196165|emb|CAL80192.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS278]
Length = 154
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 105/143 (73%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGACSGNPGPGGWG +LR+ KEK + GGE TTNNRMELMAAI AL ALK C+
Sbjct: 7 VSIFTDGACSGNPGPGGWGAILRFGDKEKELKGGEPHTTNNRMELMAAISALEALKKSCQ 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV +G + WI W++NGWKT+DKK VKN +LW + A HK++ +W+KGH
Sbjct: 67 VELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAALKPHKINWHWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
AG+ ENE+ D++AR+ + +
Sbjct: 127 AGHPENERADQLARDGVAMARMQ 149
>gi|168819165|ref|ZP_02831165.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205344274|gb|EDZ31038.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084512|emb|CBY94304.1| RNase HI, degrades RNA of DNA-RNA hybrids [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 155
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYMLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|326383631|ref|ZP_08205317.1| Ribonuclease H [Gordonia neofelifaecis NRRL B-59395]
gi|326197715|gb|EGD54903.1| Ribonuclease H [Gordonia neofelifaecis NRRL B-59395]
Length = 156
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 100/144 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V TDGAC GNPGPGGWG +LRY EK ISG E +TTNNRMEL AAI+AL AL P
Sbjct: 12 KVVEISTDGACLGNPGPGGWGAVLRYGDVEKEISGSEADTTNNRMELTAAIEALRALTRP 71
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V+LYTDSSYV G ++W+ WQ+NGWKT+ K+ VKN DLW + A H V+ W+K
Sbjct: 72 STVILYTDSSYVRNGITKWVAGWQRNGWKTASKQPVKNADLWQDLIAAEDVHTVEWRWVK 131
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG++ NE D +A +AA ++
Sbjct: 132 GHAGDKYNEIADTLATSAARKLRD 155
>gi|119944270|ref|YP_941950.1| ribonuclease H [Psychromonas ingrahamii 37]
gi|119862874|gb|ABM02351.1| RNase HI [Psychromonas ingrahamii 37]
Length = 173
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 98/143 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++++ +TDG+C GNPGPGG+G ++ Y K +S G TTNNRME++A IKAL +L
Sbjct: 20 RMKKIQLFTDGSCLGNPGPGGYGAVMIYNEHCKELSEGFLLTTNNRMEMLACIKALQSLT 79
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V L TDS YV +G + WI W++ GWKT+ K VKN+DLW A +HKV +W
Sbjct: 80 EPCEVELTTDSQYVRQGITLWIHNWKKRGWKTAAKAPVKNVDLWKALDAAQEKHKVAWHW 139
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGH+G+ ENE+ D +AR AA +
Sbjct: 140 VKGHSGHPENERCDDLARRAAEN 162
>gi|253988341|ref|YP_003039697.1| DNA replication ribonuclease HI [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779791|emb|CAQ82952.1| putative DNA replication ribonuclease HI [Photorhabdus asymbiotica]
Length = 171
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
Query: 1 MDSKHL----REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
M+ K L ++V +TDG+C GNPGPGG+GVLLRY+ E+ +S G TTNNRMELMAA
Sbjct: 8 MNKKSLPEMSKQVEIFTDGSCLGNPGPGGYGVLLRYQQHERTLSQGFHHTTNNRMELMAA 67
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
I L L PCK++L TDS YV +G ++WI W++ GW+ +DK V N+DLW + +A
Sbjct: 68 IIGLETLTRPCKIVLTTDSQYVRQGITKWIHNWKRRGWRKADKSPVSNVDLWQRLDQAIT 127
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+H +D W+KGHAG+ ENE+ D +AR AA S
Sbjct: 128 RHDIDWQWVKGHAGHHENERCDELARTAANS 158
>gi|254252713|ref|ZP_04946031.1| Ribonuclease H [Burkholderia dolosa AUO158]
gi|124895322|gb|EAY69202.1| Ribonuclease H [Burkholderia dolosa AUO158]
Length = 147
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 92/142 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY EK + GGE TTNNRMELM I AL LK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGDHEKELFGGEPNTTNNRMELMGVIAALEVLKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + H ++ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVMLHDIEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVASL 145
>gi|170697940|ref|ZP_02889023.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
gi|170137106|gb|EDT05351.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
Length = 147
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGDREKELFGGEPNTTNNRMELMGVIGALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+++ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHEIEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|206559632|ref|YP_002230393.1| ribonuclease HI [Burkholderia cenocepacia J2315]
gi|198035670|emb|CAR51557.1| ribonuclease HI [Burkholderia cenocepacia J2315]
Length = 147
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGSQEKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+++ W++
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHEIEWRWVR 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|17546232|ref|NP_519634.1| ribonuclease H [Ralstonia solanacearum GMI1000]
gi|22096082|sp|Q8XZ91|RNH_RALSO RecName: Full=Ribonuclease H; Short=RNase H
gi|17428529|emb|CAD15215.1| probable ribonuclease h (rnase h) protein [Ralstonia solanacearum
GMI1000]
Length = 151
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 97/147 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L G EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E H+V +W+
Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ NE+ D +A + I
Sbjct: 121 KGHAGHPGNERADALANKGVEIARQAI 147
>gi|157833660|pdb|1RDC|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L T+S YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTNSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|39997169|ref|NP_953120.1| ribonuclease H [Geobacter sulfurreducens PCA]
gi|81832016|sp|Q74BH0|RNH_GEOSL RecName: Full=Ribonuclease H; Short=RNase H
gi|39984059|gb|AAR35447.1| ribonuclease HI [Geobacter sulfurreducens PCA]
gi|298506182|gb|ADI84905.1| ribonuclease HI [Geobacter sulfurreducens KN400]
Length = 149
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 98/144 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
EV + DGACSGNPG GG+G +LRY EK +SG + +TTNNRMEL AAI+AL AL PC
Sbjct: 4 EVEVFCDGACSGNPGVGGYGAILRYGSAEKELSGADGDTTNNRMELTAAIRALEALSRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + TDS Y+ KG ++W+ W + GW S K+ V N DLW + E + +H+V W++G
Sbjct: 64 AVTITTDSQYLVKGMTEWLSGWVRRGWVNSKKEPVLNRDLWERLRELTGKHQVRWVWVRG 123
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
H G+ ENE+ D +AR A +++N+
Sbjct: 124 HNGHPENERCDALARRAIDAYRNE 147
>gi|294788664|ref|ZP_06753906.1| ribonuclease HI [Simonsiella muelleri ATCC 29453]
gi|294483541|gb|EFG31226.1| ribonuclease HI [Simonsiella muelleri ATCC 29453]
Length = 148
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V+ YTDGAC GNPG GGWG LLRY EK + GGE TTNNRMEL A I L+ L
Sbjct: 3 MSSVYLYTDGACKGNPGVGGWGALLRYGSHEKELYGGETHTTNNRMELTAIIAGLSTLTR 62
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V++ TDS YV G WI W++NGW+T+ KK VKN DLW + E +H+V W+
Sbjct: 63 PCEVVICTDSQYVKNGMESWIHSWKRNGWQTASKKPVKNEDLWKQLDEQVKRHQVTWTWV 122
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ ENE+ D +A
Sbjct: 123 KGHSGHPENERADALANLGVEDI 145
>gi|12084647|pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+ GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERADELARAAAMN 143
>gi|134295348|ref|YP_001119083.1| ribonuclease H [Burkholderia vietnamiensis G4]
gi|134138505|gb|ABO54248.1| RNase HI [Burkholderia vietnamiensis G4]
Length = 147
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 97/142 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGDREKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + AQH+++ W+K
Sbjct: 64 CRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHEIEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVESL 145
>gi|145633564|ref|ZP_01789292.1| ribonuclease H [Haemophilus influenzae 3655]
gi|144985770|gb|EDJ92384.1| ribonuclease H [Haemophilus influenzae 3655]
Length = 174
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWKALDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 143 GHAGHRENEICDELAKKGAEN 163
>gi|224582104|ref|YP_002635902.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|254808027|sp|C0Q6N2|RNH_SALPC RecName: Full=Ribonuclease H; Short=RNase H
gi|224466631|gb|ACN44461.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 155
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 81/141 (57%), Positives = 104/141 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGHAG+ ENE+ D +AR AA+
Sbjct: 122 KGHAGHPENERCDELARAAAM 142
>gi|323495337|ref|ZP_08100415.1| ribonuclease H [Vibrio brasiliensis LMG 20546]
gi|323310408|gb|EGA63594.1| ribonuclease H [Vibrio brasiliensis LMG 20546]
Length = 154
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 103/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRYK EK ++ G TTNNRME++A I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVLRYKQTEKTLAKGYTLTTNNRMEMLATIVALKALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +H+VD W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDAETQRHQVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARAAAEN 143
>gi|13787086|pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+ GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V+L TDS YV +G +QWI W+ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERADELARAAAMN 143
>gi|88857807|ref|ZP_01132449.1| ribonuclease HI [Pseudoalteromonas tunicata D2]
gi|88819424|gb|EAR29237.1| ribonuclease HI [Pseudoalteromonas tunicata D2]
Length = 156
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 71/141 (50%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+GV++RY K +S G + TTNNRMEL+AAI L +LK
Sbjct: 3 KSVAIYTDGSCLGNPGPGGYGVVMRYNEHLKELSQGFELTTNNRMELLAAIVGLESLKQA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G W++ W++ W T++K+ VKNIDLW + + H V W+K
Sbjct: 63 CDVVLTTDSQYVKQGIESWLQGWKKRNWLTANKQPVKNIDLWQRLDIINQTHHVQWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE+ D +AR+AA S
Sbjct: 123 GHSGHFENERCDVLARSAAES 143
>gi|221067918|ref|ZP_03544023.1| ribonuclease H [Comamonas testosteroni KF-1]
gi|220712941|gb|EED68309.1| ribonuclease H [Comamonas testosteroni KF-1]
Length = 149
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWG LL+ +K + GGE TTNNRMEL A I+AL+ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGALLQAGSAQKELFGGELGTTNNRMELKAVIEALSALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V+LY DS YV KG ++WI+ W+ GW T+ K+ VKN++LW + + H++D
Sbjct: 61 PCDVVLYLDSQYVRKGITEWIQGWKAKGWVTASKEPVKNVELWKQLDALVQGSGHRIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG+ NE+ D +A
Sbjct: 121 WVKGHAGDPGNERADALANKGVE 143
>gi|317490807|ref|ZP_07949243.1| RNase H [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920354|gb|EFV41677.1| RNase H [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 156
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 83/142 (58%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRYK EK +S G TTNNRMELMAAI AL LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYKQHEKTLSAGYYLTTNNRMELMAAIVALETLKD 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L +DS YV +G +QWI W++ GWKT+DKK VKN+DLW + A HK++ WI
Sbjct: 62 PCSVILCSDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIQSHKIEWVWI 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA S
Sbjct: 122 KGHAGHIENERCDELARAAAGS 143
>gi|283783998|ref|YP_003363863.1| ribonuclease HI [Citrobacter rodentium ICC168]
gi|282947452|emb|CBG86999.1| ribonuclease HI [Citrobacter rodentium ICC168]
Length = 155
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMA I AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYTLTTNNRMELMATIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|284799575|ref|ZP_05984324.2| ribonuclease HI [Neisseria subflava NJ9703]
gi|284797429|gb|EFC52776.1| ribonuclease HI [Neisseria subflava NJ9703]
Length = 180
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGV +RY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 38 KPVYLYTDGACKGNPGAGGWGVFMRYGTHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 97
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G WI+ W++NGWKT+ KK VKN DLW + QH V W+K
Sbjct: 98 CQVVICTDSQYVKNGMESWIRGWKKNGWKTAAKKPVKNDDLWKELDSLVQQHDVRWTWVK 157
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 158 GHAGHPENEKADELANRGAAKF 179
>gi|158423090|ref|YP_001524382.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
gi|158329979|dbj|BAF87464.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
Length = 150
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 102/144 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDGACSGNPGPGGWG +LR EK + GGE TTNNRMELMAAI AL ALK
Sbjct: 1 MSRVEIWTDGACSGNPGPGGWGAILRSGPHEKELKGGEALTTNNRMELMAAISALEALKK 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L+TDS Y+ G ++W+ W++NGW+T+DKK VKN DLW + A H + +W+
Sbjct: 61 PCGVDLHTDSEYLRNGITKWMFGWKRNGWRTADKKPVKNQDLWERLDAALHSHDIAWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAGN+ NE+ D++AR+ FK
Sbjct: 121 KGHAGNELNERADQLARDGMAPFK 144
>gi|197334927|ref|YP_002156765.1| ribonuclease HI [Vibrio fischeri MJ11]
gi|197316417|gb|ACH65864.1| ribonuclease HI [Vibrio fischeri MJ11]
Length = 152
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 103/142 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPGPGG+G+++RYKG EK S G +TTNNRME++AA+ AL LK
Sbjct: 1 MKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNRMEMLAAVIALRNLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G +QWI W++ WK +DKK V N DLW + S +HK+D W+
Sbjct: 61 PCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKKPVVNADLWKQLDAESERHKIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ENE D +AR AA +
Sbjct: 121 KGHAGHRENEMCDELARTAAEN 142
>gi|187929120|ref|YP_001899607.1| ribonuclease H [Ralstonia pickettii 12J]
gi|187726010|gb|ACD27175.1| ribonuclease H [Ralstonia pickettii 12J]
Length = 148
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 96/144 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGSHEKELFGGETLTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E A H+V +W+
Sbjct: 61 PCRVQVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVAGHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE+ D +A +
Sbjct: 121 KGHAGHPGNERADALANKGVEMAR 144
>gi|256823145|ref|YP_003147108.1| Ribonuclease H [Kangiella koreensis DSM 16069]
gi|256796684|gb|ACV27340.1| Ribonuclease H [Kangiella koreensis DSM 16069]
Length = 149
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDGAC GNPGPGGWG LLRY EK + GGE TTNNRMELMAAI+AL ALK
Sbjct: 1 MKKIEIYTDGACKGNPGPGGWGALLRYNKHEKHLFGGELNTTNNRMELMAAIEALKALKD 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV G +QW++ W+ GWKT+++K VKN DLW + + A+H V +W+
Sbjct: 61 KCQVDLTTDSVYVKNGINQWLENWKAKGWKTANRKPVKNQDLWQQLDQQVARHNVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ EN+ D +A
Sbjct: 121 KGHSGHPENDIADELANKGVEK 142
>gi|160900327|ref|YP_001565909.1| ribonuclease H [Delftia acidovorans SPH-1]
gi|160365911|gb|ABX37524.1| ribonuclease H [Delftia acidovorans SPH-1]
Length = 148
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWGV+L K + GGE TTNNRME+MA I+AL+AL+
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGVVLESGSARKELFGGELNTTNNRMEMMAVIEALSALRR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC V+LY DS YV KG ++WI W+ GWKT+ K+ VKN++LW + H++D
Sbjct: 61 PCDVVLYIDSQYVLKGITEWIHGWKAKGWKTASKEPVKNVELWQRLDALVQGGGHRIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ NE+ D +A
Sbjct: 121 WVKGHAGDPGNERADALANKGVDQA 145
>gi|332993504|gb|AEF03559.1| ribonuclease H [Alteromonas sp. SN2]
Length = 155
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 103/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +H +TDG+C GNPGPGG+G +L Y K +SGG TTNNRMELMA I+AL +L P
Sbjct: 4 KTIHIFTDGSCLGNPGPGGYGAVLVYNSHRKELSGGFAHTTNNRMELMAPIEALNSLTEP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV G +QWI W++NGW+TSDKK VKN DLW + EA ++HK++ +W+K
Sbjct: 64 CNVELTTDSQYVKNGINQWIHNWRKNGWRTSDKKAVKNADLWKRLDEAVSKHKINWHWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE+ D +AR AA +
Sbjct: 124 GHSGHPENERCDDLARGAAEA 144
>gi|206576707|ref|YP_002240303.1| ribonuclease H [Klebsiella pneumoniae 342]
gi|288937008|ref|YP_003441067.1| ribonuclease H [Klebsiella variicola At-22]
gi|238056789|sp|B5Y1G2|RNH_KLEP3 RecName: Full=Ribonuclease H; Short=RNase H
gi|206565765|gb|ACI07541.1| ribonuclease H [Klebsiella pneumoniae 342]
gi|288891717|gb|ADC60035.1| Ribonuclease H [Klebsiella variicola At-22]
Length = 155
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 80/140 (57%), Positives = 104/140 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY+ EK S G + TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QHK+ W+
Sbjct: 62 HCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>gi|241663328|ref|YP_002981688.1| ribonuclease H [Ralstonia pickettii 12D]
gi|309782457|ref|ZP_07677181.1| ribonuclease HI [Ralstonia sp. 5_7_47FAA]
gi|240865355|gb|ACS63016.1| ribonuclease H [Ralstonia pickettii 12D]
gi|308918794|gb|EFP64467.1| ribonuclease HI [Ralstonia sp. 5_7_47FAA]
Length = 148
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 96/144 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGSHEKELFGGEALTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E A H+V +W+
Sbjct: 61 PCRVQVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVAGHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE+ D +A +
Sbjct: 121 KGHAGHPGNERADALANKGVEMAR 144
>gi|328545000|ref|YP_004305109.1| RNase H [polymorphum gilvum SL003B-26A1]
gi|326414742|gb|ADZ71805.1| RNase H [Polymorphum gilvum SL003B-26A1]
Length = 153
Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 101/141 (71%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDGACSGNPGPGGWG +L++ + +SGGE +TTNNRMEL AAIKAL ALK PC V
Sbjct: 2 TIHTDGACSGNPGPGGWGAILQFGEHTRELSGGEAQTTNNRMELTAAIKALNALKRPCTV 61
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LYTDS YV G ++W+ W++N W+TSD+K VKN +LW EA +HK+ +W+KGHA
Sbjct: 62 DLYTDSVYVRDGITKWMFNWKRNNWRTSDRKPVKNAELWQALDEAQKRHKISWHWVKGHA 121
Query: 130 GNQENEKVDRIARNAAVSFKN 150
G+ ENE+ D +AR ++
Sbjct: 122 GHPENERADELAREGMKPYQR 142
>gi|312795585|ref|YP_004028507.1| ribonuclease HI [Burkholderia rhizoxinica HKI 454]
gi|312167360|emb|CBW74363.1| Ribonuclease HI (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454]
Length = 149
Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats.
Identities = 78/148 (52%), Positives = 100/148 (67%), Gaps = 2/148 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S L + YTDGAC GNPGPGGWG LLR+ +EK + GGE+ TTNNRMELMA I AL
Sbjct: 1 MESNTL--IEIYTDGACKGNPGPGGWGALLRFGTQEKELFGGERSTTNNRMELMAVIAAL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PCK +++TDS YV KG S+WI W++ W T+ K VKN DLW + S H++
Sbjct: 59 EALKRPCKAVVHTDSQYVQKGISEWIHGWKKKNWMTAAKTPVKNADLWQRLDALSVLHEI 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W++GHAG+ ENE+ D +A S
Sbjct: 119 EWRWVRGHAGHPENERADALANRGVTSL 146
>gi|300024399|ref|YP_003757010.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
gi|299526220|gb|ADJ24689.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
Length = 159
Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ + + Y+DGACSGNPGPGGWG +L K ISGGE TTNNRMEL+AAI AL
Sbjct: 1 MTAEAPK-ILIYSDGACSGNPGPGGWGAVLISGKHRKEISGGEVLTTNNRMELLAAISAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK +V LYTDS+YV G + W+ W++NGW+T+DKK VKN++LW +H V
Sbjct: 60 EALKKRSEVALYTDSAYVKNGITGWVHGWKKNGWRTADKKPVKNVELWQALDALRNKHDV 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ +W+KGHAG+ ENE+ D +AR A FK
Sbjct: 120 EWHWLKGHAGHPENERADELARQAMAPFK 148
>gi|218516750|ref|ZP_03513590.1| ribonuclease H [Rhizobium etli 8C-3]
Length = 151
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 88/145 (60%), Positives = 107/145 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAILALQALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV G S+WI W++NGW TSDKK VKN +LW EA +HKV L+W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWKKNGWNTSDKKLVKNAELWQALEEARNRHKVTLHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ ENE+ D +AR FK
Sbjct: 121 KGHAGHPENERADELARRGIEPFKK 145
>gi|289207685|ref|YP_003459751.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
gi|288943316|gb|ADC71015.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
Length = 153
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 97/141 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V+ YTDGAC GNPGPGGWG +LRY+G E+ + G E ETTNNRMEL AAI+AL LK PC
Sbjct: 5 RVYIYTDGACRGNPGPGGWGAILRYRGTERELYGAEAETTNNRMELTAAIRALETLKRPC 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
KV L TDS YV +G ++W+ W++ WK++ VKN DLW +A+H ++ YW++G
Sbjct: 65 KVELVTDSKYVKQGLTEWLPGWKRRNWKSASGSPVKNRDLWEALDAEAARHDIEWYWVRG 124
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ ENE+ D +A +
Sbjct: 125 HSGHPENERADELANAGIDAL 145
>gi|300703803|ref|YP_003745405.1| ribonuclease h (RNAse h) [Ralstonia solanacearum CFBP2957]
gi|299071466|emb|CBJ42786.1| Ribonuclease H (RNase H) [Ralstonia solanacearum CFBP2957]
Length = 151
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 96/144 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L G EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLISGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E H+V +W+
Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVAHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE+ D +A +
Sbjct: 121 KGHAGHPGNERADALANKGVEVAR 144
>gi|299066482|emb|CBJ37670.1| Ribonuclease H (RNase H) [Ralstonia solanacearum CMR15]
Length = 151
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 97/147 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L G EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E H+V +W+
Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVAHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ NE+ D +A + I
Sbjct: 121 KGHAGHPGNERADALANKGVEVARQAI 147
>gi|71907225|ref|YP_284812.1| ribonuclease H [Dechloromonas aromatica RCB]
gi|123760553|sp|Q47FN9|RNH_DECAR RecName: Full=Ribonuclease H; Short=RNase H
gi|71846846|gb|AAZ46342.1| RNase HI [Dechloromonas aromatica RCB]
Length = 148
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 96/142 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGAC GNPGPGGWG +LR EK + GGEKETTNNRMEL AAI+A+ ALK P
Sbjct: 6 TVEIFTDGACKGNPGPGGWGAILRLGPHEKELWGGEKETTNNRMELTAAIRAIEALKRPI 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+YTDS YV KG ++WI W++NGWKTSDKK VKN DLW HK++ W++G
Sbjct: 66 GGKIYTDSQYVMKGINEWIHGWKKNGWKTSDKKPVKNADLWQLLDAQVKLHKLEWIWVRG 125
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H+G+ ENE+ D +A K
Sbjct: 126 HSGHPENERADALANRGIEELK 147
>gi|188534759|ref|YP_001908556.1| Putative ribonuclease H (RNase H) [Erwinia tasmaniensis Et1/99]
gi|238690918|sp|B2VHJ5|RNH_ERWT9 RecName: Full=Ribonuclease H; Short=RNase H
gi|188029801|emb|CAO97681.1| Putative ribonuclease H (RNase H) [Erwinia tasmaniensis Et1/99]
Length = 155
Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats.
Identities = 79/140 (56%), Positives = 102/140 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY EKI S G + TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYGKHEKIFSAGFRLTTNNRMEMMAAIVALEALTQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H + W+
Sbjct: 62 PCAVVLSTDSQYVRQGITSWIHNWKKRGWKTTDKKPVKNVDLWKRLDAALSHHDITWKWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +ARNAA
Sbjct: 122 KGHAGHVENERCDELARNAA 141
>gi|161525205|ref|YP_001580217.1| ribonuclease H [Burkholderia multivorans ATCC 17616]
gi|189350056|ref|YP_001945684.1| ribonuclease HI [Burkholderia multivorans ATCC 17616]
gi|221201956|ref|ZP_03574992.1| RNase H [Burkholderia multivorans CGD2M]
gi|221204914|ref|ZP_03577931.1| RNase H [Burkholderia multivorans CGD2]
gi|221213891|ref|ZP_03586864.1| RNase H [Burkholderia multivorans CGD1]
gi|160342634|gb|ABX15720.1| Ribonuclease H [Burkholderia multivorans ATCC 17616]
gi|189334078|dbj|BAG43148.1| ribonuclease HI [Burkholderia multivorans ATCC 17616]
gi|221166068|gb|EED98541.1| RNase H [Burkholderia multivorans CGD1]
gi|221175771|gb|EEE08201.1| RNase H [Burkholderia multivorans CGD2]
gi|221178039|gb|EEE10450.1| RNase H [Burkholderia multivorans CGD2M]
Length = 147
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELM I AL ALK P
Sbjct: 4 DTIDIYTDGACKGNPGPGGWGALLRYGEREKELFGGEPNTTNNRMELMGVIAALEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+++TDS YV KG S+WI W++ GW T+ K VKN DLW + A H+V+ W+K
Sbjct: 64 CHVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVALHEVEWRWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A S
Sbjct: 124 GHAGHPENERADALANRGVASL 145
>gi|83747774|ref|ZP_00944808.1| Hypothetical Protein RRSL_02196 [Ralstonia solanacearum UW551]
gi|207723984|ref|YP_002254382.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum MolK2]
gi|207742894|ref|YP_002259286.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum IPO1609]
gi|83725546|gb|EAP72690.1| Hypothetical Protein RRSL_02196 [Ralstonia solanacearum UW551]
gi|206589192|emb|CAQ36154.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum MolK2]
gi|206594289|emb|CAQ61216.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum IPO1609]
Length = 151
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 96/144 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L G EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLISGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E H+V +W+
Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVAHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE+ D +A +
Sbjct: 121 KGHAGHPGNERADALANKGVEVAR 144
>gi|167623804|ref|YP_001674098.1| ribonuclease H [Shewanella halifaxensis HAW-EB4]
gi|226736837|sp|B0TRM1|RNH_SHEHH RecName: Full=Ribonuclease H; Short=RNase H
gi|167353826|gb|ABZ76439.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4]
Length = 161
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 105/146 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+G++L+YK + K ++ G TTNNRMEL+A I AL LK
Sbjct: 4 LKQISIYTDGSCLGNPGPGGYGIVLKYKKQTKELADGFALTTNNRMELLAPIVALEVLKV 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L +DS Y+ +G +QWI W++ GW TS + VKN+DLW + S +H++D W+
Sbjct: 64 PCQVILTSDSQYMRQGITQWIHGWKRKGWLTSAGQPVKNVDLWKRLDTVSQRHQIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR AA + ++
Sbjct: 124 KGHAGHTENERCDDLARQAAEAKPSQ 149
>gi|322831645|ref|YP_004211672.1| Ribonuclease H [Rahnella sp. Y9602]
gi|321166846|gb|ADW72545.1| Ribonuclease H [Rahnella sp. Y9602]
Length = 155
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 101/139 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRME+MAAI AL AL P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGFGAILRYKQHEKEFSAGFRLTTNNRMEMMAAIVALEALSTP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A H+++ W+K
Sbjct: 63 CEVTLSTDSQYVRQGITLWIHNWKKRGWKTADKKPVKNVDLWKRLDAAIQTHELNWMWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE+ D +A+ AA
Sbjct: 123 GHAGHPENERCDVLAKEAA 141
>gi|307824633|ref|ZP_07654857.1| Ribonuclease H [Methylobacter tundripaludum SV96]
gi|307734287|gb|EFO05140.1| Ribonuclease H [Methylobacter tundripaludum SV96]
Length = 151
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 101/145 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGAC GNPGPGGWGV+L YKG K I GG+ +TTNNRMELMAAI+AL L P
Sbjct: 3 DSVIIYTDGACRGNPGPGGWGVILCYKGTIKEIYGGDPDTTNNRMELMAAIQALEILTKP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS YV +G ++WI W++ GWKT+ + VKN DLW + A +H ++ +W+K
Sbjct: 63 CSVQINTDSKYVMQGITEWISNWKKRGWKTASRTPVKNEDLWRRLDAAIQRHNIEWFWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH+G+++N++ D +A S KN+
Sbjct: 123 GHSGHKDNDRADELANLGIDSLKNE 147
>gi|297560924|ref|YP_003679898.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296845372|gb|ADH67392.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 160
Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats.
Identities = 77/146 (52%), Positives = 107/146 (73%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + V YTDGACSGNPGPGGWGV LRY G EK + GGE +TTNNRMELMAAI+AL +
Sbjct: 12 QEPTQRVVIYTDGACSGNPGPGGWGVWLRYGGHEKELYGGEAQTTNNRMELMAAIRALES 71
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L+ P VL++TDSSYV G + W+ W++ GW+T+DKK VKN+DLW + E +++++V+
Sbjct: 72 LRQPLPVLVHTDSSYVRNGITSWLHGWKRRGWRTADKKPVKNVDLWQRLDEVASRYEVEW 131
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH+G++ NE+ D +AR
Sbjct: 132 RWVRGHSGDEGNERADALARRGRDEA 157
>gi|320451005|ref|YP_004203101.1| ribonuclease HI [Thermus scotoductus SA-01]
gi|320151174|gb|ADW22552.1| ribonuclease HI [Thermus scotoductus SA-01]
Length = 161
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 99/144 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDGAC GNPGPGGW LLRY E+++SGGE TTNNRMEL A ++ L ALK
Sbjct: 1 MKQVELFTDGACLGNPGPGGWAALLRYGSHERMLSGGEPCTTNNRMELTALLQGLRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L++DS Y+ K ++W+ W++ G + +D K ++N DLW + +H+V +WI
Sbjct: 61 PCEVHLFSDSQYLVKALNEWLPAWEKRGMRRADGKPIENRDLWEALMPELKRHRVVPHWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH G+ ENE+VDR AR A K
Sbjct: 121 RGHNGHPENERVDREARRQAQRQK 144
>gi|127513040|ref|YP_001094237.1| ribonuclease H [Shewanella loihica PV-4]
gi|189043715|sp|A3QET0|RNH_SHELP RecName: Full=Ribonuclease H; Short=RNase H
gi|126638335|gb|ABO23978.1| ribonuclease H [Shewanella loihica PV-4]
Length = 158
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 109/147 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPGPGG+GV+++YK K +SGG TTNNRMEL+A I AL ALK
Sbjct: 4 LKQLLIFTDGSCLGNPGPGGYGVVMKYKAHVKELSGGFALTTNNRMELLAPIMALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L +DS Y+ +G +QWI W++ GW T+ K+ VKN+DLW + A++ HK+D W+
Sbjct: 64 PCQIILTSDSQYMRQGITQWIHGWKKRGWLTAAKEPVKNVDLWQRLDAATSTHKIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D +AR AA + +++
Sbjct: 124 KGHAGHIENERCDTLAREAAEAGPSEV 150
>gi|258627374|ref|ZP_05722158.1| Ribonuclease HI [Vibrio mimicus VM603]
gi|258580412|gb|EEW05377.1| Ribonuclease HI [Vibrio mimicus VM603]
Length = 156
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME++AA+ AL LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ GW+T+DKK VKN DLW +A+H+V+ W+K
Sbjct: 63 CRVILTTDSQYVRQGITQWIHNWKLRGWRTADKKPVKNADLWQALDRETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|117920809|ref|YP_870001.1| ribonuclease H [Shewanella sp. ANA-3]
gi|189043717|sp|A0KXS6|RNH_SHESA RecName: Full=Ribonuclease H; Short=RNase H
gi|117613141|gb|ABK48595.1| ribonuclease H [Shewanella sp. ANA-3]
Length = 158
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 107/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL ALK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIVALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L +DS Y+ +G + WI W++ GW TS++ VKN+DLW + +A+ H++D W+
Sbjct: 64 PCKVILTSDSQYMRQGITTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D++AR AA + ++
Sbjct: 124 KGHAGHPENERCDQLARAAAEASPTQV 150
>gi|16272105|ref|NP_438307.1| ribonuclease H [Haemophilus influenzae Rd KW20]
gi|1173097|sp|P43807|RNH_HAEIN RecName: Full=Ribonuclease HI; Short=RNase HI
gi|1573091|gb|AAC21809.1| ribonuclease H (rnh) [Haemophilus influenzae Rd KW20]
Length = 154
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 97/142 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK
Sbjct: 2 PKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFQTTNNRMELRAVIEALNTLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+
Sbjct: 62 PCLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ENE D +A+ A +
Sbjct: 122 KGHAGHRENEICDELAKKGAEN 143
>gi|257483797|ref|ZP_05637838.1| ribonuclease H [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289627518|ref|ZP_06460472.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289649931|ref|ZP_06481274.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. 2250]
gi|298486277|ref|ZP_07004340.1| Ribonuclease HI [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298159284|gb|EFI00342.1| Ribonuclease HI [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|320325375|gb|EFW81442.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. B076]
gi|320327640|gb|EFW83648.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. race 4]
gi|330868360|gb|EGH03069.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330985655|gb|EGH83758.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331012693|gb|EGH92749.1| ribonuclease H [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 149
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHNVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|258621020|ref|ZP_05716054.1| Ribonuclease HI [Vibrio mimicus VM573]
gi|258586408|gb|EEW11123.1| Ribonuclease HI [Vibrio mimicus VM573]
Length = 156
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME++AA+ AL LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN DLW +A+H+V+ W+K
Sbjct: 63 CRVVLTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|209886441|ref|YP_002290298.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
gi|229564314|sp|B6JJ39|RNH_OLICO RecName: Full=Ribonuclease H; Short=RNase H
gi|209874637|gb|ACI94433.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
Length = 149
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 81/144 (56%), Positives = 98/144 (68%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MSEPQRPHVVIFTDGACSGNPGPGGWGAILRFGEIEKELKGGENPTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK V L TDS YV +G + WI W++NGW+TSDKK VKN+DLW + A H+V
Sbjct: 61 EALKRSAIVDLTTDSQYVRQGITSWIFNWKKNGWRTSDKKPVKNVDLWQRLDAALKPHEV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+WIKGHAG+ ENE+ D +AR
Sbjct: 121 RWHWIKGHAGHAENERADELAREG 144
>gi|145635315|ref|ZP_01791018.1| ribonuclease H [Haemophilus influenzae PittAA]
gi|145267459|gb|EDK07460.1| ribonuclease H [Haemophilus influenzae PittAA]
Length = 174
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/139 (50%), Positives = 97/139 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 142
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG++ENE D +A+ A
Sbjct: 143 GHAGHRENEICDELAKKGA 161
>gi|187611430|sp|A1SS86|RNH_PSYIN RecName: Full=Ribonuclease H; Short=RNase H
Length = 153
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 98/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDG+C GNPGPGG+G ++ Y K +S G TTNNRME++A IKAL +L
Sbjct: 1 MKKIQLFTDGSCLGNPGPGGYGAVMIYNEHCKELSEGFLLTTNNRMEMLACIKALQSLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L TDS YV +G + WI W++ GWKT+ K VKN+DLW A +HKV +W+
Sbjct: 61 PCEVELTTDSQYVRQGITLWIHNWKKRGWKTAAKAPVKNVDLWKALDAAQEKHKVAWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE+ D +AR AA +
Sbjct: 121 KGHSGHPENERCDDLARRAAEN 142
>gi|118581344|ref|YP_902594.1| ribonuclease H [Pelobacter propionicus DSM 2379]
gi|187611390|sp|A1AT66|RNH_PELPD RecName: Full=Ribonuclease H; Short=RNase H
gi|118504054|gb|ABL00537.1| ribonuclease H [Pelobacter propionicus DSM 2379]
Length = 163
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 97/141 (68%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGACSGNPGPGG+G +LRY G EK I G E TTNNRMEL AA++AL L PC+
Sbjct: 20 VEIYCDGACSGNPGPGGYGAILRYNGHEKEIRGSEAHTTNNRMELTAAMEALRLLTRPCR 79
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS Y+ KG ++WI+ WQ+ GW+ S K+ V N DLW + ++ SA H V WI+GH
Sbjct: 80 ITIVTDSQYLVKGMTEWIQGWQRRGWQNSKKEPVLNRDLWEELLKLSAHHDVSWQWIRGH 139
Query: 129 AGNQENEKVDRIARNAAVSFK 149
AG+ ENE+ D +AR A +
Sbjct: 140 AGHAENERCDSLARQAITEMR 160
>gi|104782587|ref|YP_609085.1| ribonuclease H [Pseudomonas entomophila L48]
gi|123079132|sp|Q1I7T4|RNH_PSEE4 RecName: Full=Ribonuclease H; Short=RNase H
gi|95111574|emb|CAK16294.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudomonas entomophila
L48]
Length = 148
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/145 (53%), Positives = 101/145 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGAC GNPGPGGWGVL+ +KG EK + GGE+ETTNNRMELMAAI+ L ALK
Sbjct: 3 DSVEIYTDGACKGNPGPGGWGVLMVFKGVEKELWGGERETTNNRMELMAAIEGLKALKRE 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLWM E +HKV W++
Sbjct: 63 CEVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWMALDEQVNRHKVTWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH G+ NE+ D++A + +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVRAQ 147
>gi|300787941|ref|YP_003768232.1| ribonuclease HI [Amycolatopsis mediterranei U32]
gi|299797455|gb|ADJ47830.1| ribonuclease HI [Amycolatopsis mediterranei U32]
Length = 153
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
+V YTDGACSGNPGPGGWG +LRY E+ + GGE TTNNRMEL A I+AL +L P
Sbjct: 2 DVEIYTDGACSGNPGPGGWGAVLRYGRHERELYGGEATPTTNNRMELTAPIRALESLTRP 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V +YTDS+YV G +QW+ +W+ NGW+T+ + VKN DLW + A H V+ W+K
Sbjct: 62 SQVRVYTDSTYVRNGITQWLPRWKSNGWQTTARAPVKNADLWQRLDAAIGGHTVEWLWVK 121
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ ENE+ DR+A + +
Sbjct: 122 GHAGHPENERADRLAVRGVQEARER 146
>gi|77166267|ref|YP_344792.1| ribonuclease H [Nitrosococcus oceani ATCC 19707]
gi|254435452|ref|ZP_05048959.1| RNase H [Nitrosococcus oceani AFC27]
gi|123730602|sp|Q3J7D4|RNH_NITOC RecName: Full=Ribonuclease H; Short=RNase H
gi|76884581|gb|ABA59262.1| Ribonuclease H [Nitrosococcus oceani ATCC 19707]
gi|207088563|gb|EDZ65835.1| RNase H [Nitrosococcus oceani AFC27]
Length = 147
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 108/143 (75%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPGPGGWG LL Y+G+EK +SG E +TTNNRMELMAAI+AL LK PC+
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLCYQGREKTLSGAESKTTNNRMELMAAIRALETLKRPCR 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS Y+ +G + W+ W++ GWKT++++ VKNIDLW + + +AQH+++ +W++GH
Sbjct: 65 VHLTTDSQYLRQGITCWLSNWKRRGWKTANRQPVKNIDLWQRLDQVAAQHRIEWFWVRGH 124
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
G+ NE+ D +AR+A + + K
Sbjct: 125 EGHPGNERADALARSAITNGEEK 147
>gi|121594113|ref|YP_986009.1| ribonuclease H [Acidovorax sp. JS42]
gi|187611387|sp|A1W6Q8|RNH_ACISJ RecName: Full=Ribonuclease H; Short=RNase H
gi|120606193|gb|ABM41933.1| RNase HI [Acidovorax sp. JS42]
Length = 148
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWG +LR EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGAVLRSGTLEKELFGGELGTTNNRMELMAVIQALGALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC+V LY DS YV +G ++WI W++ GW+T+ + VKN++LW + E A H+++ +
Sbjct: 61 PCQVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHQAGHRIEWH 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W++GHAG+ NE+ D +A
Sbjct: 121 WVRGHAGDPGNERADMLANKGVEQ 144
>gi|114332141|ref|YP_748363.1| ribonuclease H [Nitrosomonas eutropha C91]
gi|122313179|sp|Q0AE34|RNH_NITEC RecName: Full=Ribonuclease H; Short=RNase H
gi|114309155|gb|ABI60398.1| RNase HI [Nitrosomonas eutropha C91]
Length = 162
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 100/156 (64%), Gaps = 7/156 (4%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT- 61
++ V +TDGAC GNPGPGGWGV L + G+ + GGE TTNNRMEL+AAI+AL
Sbjct: 4 KSDMKRVEIFTDGACKGNPGPGGWGVCLHFNGETREFFGGEPVTTNNRMELLAAIRALQE 63
Query: 62 ------ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+ +V L+TDS YV KG S+WI W++ GW+T+DKK VKN LW + + S
Sbjct: 64 LESLEDNGQQHLQVQLHTDSQYVQKGISEWIHGWKKRGWRTADKKPVKNEALWRELDDLS 123
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+H+V+ +W++GH G+ NE+ DR+A S +K
Sbjct: 124 QRHQVEWFWVRGHNGHAGNERADRLANQGVESVLSK 159
>gi|119775016|ref|YP_927756.1| ribonuclease H [Shewanella amazonensis SB2B]
gi|189043711|sp|A1S6T0|RNH_SHEAM RecName: Full=Ribonuclease H; Short=RNase H
gi|119767516|gb|ABM00087.1| ribonuclease HI [Shewanella amazonensis SB2B]
Length = 156
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ YTDG+C GNPGPGG+GV++ YK K ++ G TTNNRMEL+A I AL +LK
Sbjct: 4 LKQIRIYTDGSCLGNPGPGGYGVVMIYKQHRKELADGFALTTNNRMELLAPIVALESLKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L +DS Y+ +G ++WI W++ GW T+ K VKN+DLW + A+A+HKVD W+
Sbjct: 64 PCDVILTSDSQYMRQGITEWIHGWKKKGWVTASKTPVKNVDLWQRLDAAAAKHKVDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D +AR AA + +I
Sbjct: 124 KGHAGHAENERCDTLAREAAEAKPTQI 150
>gi|331007395|ref|ZP_08330581.1| Ribonuclease HI [gamma proteobacterium IMCC1989]
gi|330418803|gb|EGG93283.1| Ribonuclease HI [gamma proteobacterium IMCC1989]
Length = 142
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 102/140 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V ++DGAC GNPGPGGWG LLRY EK + GGEK TTNNRMELMAAI+ L +LK
Sbjct: 1 MKKVEIFSDGACKGNPGPGGWGALLRYGDTEKPLCGGEKNTTNNRMELMAAIEGLRSLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV KG ++WIK W++NGWKT+ KK VKN DLW + + +H V+ +W+
Sbjct: 61 ACEVELTTDSQYVRKGITEWIKNWKKNGWKTAAKKPVKNADLWQQLDDEVTRHTVNWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+G++ENE D +A
Sbjct: 121 KGHSGHRENEIADELANKGI 140
>gi|329850267|ref|ZP_08265112.1| RNase H family protein [Asticcacaulis biprosthecum C19]
gi|328840582|gb|EGF90153.1| RNase H family protein [Asticcacaulis biprosthecum C19]
Length = 151
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 98/146 (67%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L +V YTDGAC GNPG GGWG +L EK + G E ETTNNRMELMA I+AL AL
Sbjct: 2 SDLPKVTIYTDGACKGNPGRGGWGAILISGEHEKELYGYEPETTNNRMELMAVIQALEAL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K PC V L+ DS YV KG +WI W++ GWKT+D K VKN DLW++ A+ +HK+ +
Sbjct: 62 KKPCDVDLHADSQYVLKGIKEWIFAWKKRGWKTADNKPVKNDDLWIRLDTATKRHKIKWH 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG++ NE+ D++A +
Sbjct: 122 WVKGHAGHELNERADQLANKGITEAR 147
>gi|330878789|gb|EGH12938.1| ribonuclease H [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330963306|gb|EGH63566.1| ribonuclease H [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 150
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|296136537|ref|YP_003643779.1| Ribonuclease H [Thiomonas intermedia K12]
gi|295796659|gb|ADG31449.1| Ribonuclease H [Thiomonas intermedia K12]
Length = 151
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 103/148 (69%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++ E+ YTDGAC GNPGPGGWGV+LR EK + GGE +TTNNRMELMAAI AL
Sbjct: 1 MTTESDNEIIIYTDGACKGNPGPGGWGVVLRSGAHEKTLHGGEPQTTNNRMELMAAIMAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK P +VLL+TDS YV KG ++WI W++ GW T+DKK VKN+DLW + +A+A H +
Sbjct: 61 EALKRPSRVLLHTDSQYVLKGMTEWIVGWKRRGWTTADKKPVKNVDLWQRLEKAAAPHTL 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH G+ NE+ D +A +
Sbjct: 121 RWVWVRGHTGDPGNEQADALANQGVEAA 148
>gi|145639807|ref|ZP_01795409.1| ribonuclease H [Haemophilus influenzae PittII]
gi|145271175|gb|EDK11090.1| ribonuclease H [Haemophilus influenzae PittII]
Length = 154
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 123 GHAGHRENEICDELAKKGAEN 143
>gi|46143222|ref|ZP_00135642.2| COG0328: Ribonuclease HI [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207907|ref|YP_001053132.1| ribonuclease H [Actinobacillus pleuropneumoniae L20]
gi|303249786|ref|ZP_07335990.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307251975|ref|ZP_07533876.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|187611388|sp|A3MZE1|RNH_ACTP2 RecName: Full=Ribonuclease H; Short=RNase H
gi|126096699|gb|ABN73527.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|302651353|gb|EFL81505.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860667|gb|EFM92679.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 153
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN +LW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFSWKKNNWKTANGKPVKNKELWIALDQEIQRHKIEWTWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 121 KGHSGHRENEICDELAKAGANN 142
>gi|295096913|emb|CBK86003.1| RNase HI [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 155
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G ++RY+ EK S G TTNNRMELMAAI AL ALK
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKEH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+K
Sbjct: 63 CDVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHEIKWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAASN 143
>gi|90416119|ref|ZP_01224052.1| ribonuclease HI [marine gamma proteobacterium HTCC2207]
gi|90332493|gb|EAS47690.1| ribonuclease HI [marine gamma proteobacterium HTCC2207]
Length = 143
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 97/143 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGWGVL+RY KEK + GGE ETTNNRMEL A I+ + AL
Sbjct: 1 MKAVELFTDGACRGNPGPGGWGVLMRYGDKEKTLCGGEAETTNNRMELTAVIEGIAALSE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV + +DS+YV KG +W+ W++ WKT+ KK VKN+DLW K H +D +W+
Sbjct: 61 PCKVSVTSDSTYVLKGIQEWMPAWKKRNWKTASKKPVKNVDLWQKLDAVIKHHDIDWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G+ ENE D++A
Sbjct: 121 KGHSGHAENEIADQLANRGIDEL 143
>gi|323498001|ref|ZP_08103010.1| ribonuclease H [Vibrio sinaloensis DSM 21326]
gi|323317046|gb|EGA70048.1| ribonuclease H [Vibrio sinaloensis DSM 21326]
Length = 154
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++A I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRMEMLATIVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKT+DKK VKN DLW +A+H VD W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNSDLWKALDSETARHNVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARAAAEN 143
>gi|330889981|gb|EGH22642.1| ribonuclease H [Pseudomonas syringae pv. mori str. 301020]
Length = 149
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHNVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|294340665|emb|CAZ89057.1| Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) [Thiomonas
sp. 3As]
Length = 151
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 80/148 (54%), Positives = 102/148 (68%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M S+ E+ YTDGAC GNPGPGGWGV+LR EK + GGE +TTNNRMELMAAI AL
Sbjct: 1 MTSESDNEIIIYTDGACKGNPGPGGWGVVLRSGAHEKTLHGGELQTTNNRMELMAAIMAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK P VLL+TDS YV KG ++WI W++ GW T+DKK VKN+DLW + +A+A H +
Sbjct: 61 EALKRPSHVLLHTDSQYVLKGMTEWIVGWKRRGWTTADKKPVKNVDLWQRLEKAAAPHTL 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH G+ NE+ D +A +
Sbjct: 121 RWTWVRGHTGDPGNEQADALANQGVEAA 148
>gi|153825359|ref|ZP_01978026.1| ribonuclease HI [Vibrio cholerae MZO-2]
gi|153829943|ref|ZP_01982610.1| ribonuclease HI [Vibrio cholerae 623-39]
gi|183179466|ref|ZP_02957677.1| ribonuclease HI [Vibrio cholerae MZO-3]
gi|229513877|ref|ZP_04403339.1| ribonuclease HI [Vibrio cholerae TMA 21]
gi|229522181|ref|ZP_04411598.1| ribonuclease HI [Vibrio cholerae TM 11079-80]
gi|229524237|ref|ZP_04413642.1| ribonuclease HI [Vibrio cholerae bv. albensis VL426]
gi|229528762|ref|ZP_04418152.1| ribonuclease HI [Vibrio cholerae 12129(1)]
gi|254225775|ref|ZP_04919380.1| ribonuclease HI [Vibrio cholerae V51]
gi|254286457|ref|ZP_04961414.1| ribonuclease HI [Vibrio cholerae AM-19226]
gi|262192141|ref|ZP_06050302.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
gi|297580876|ref|ZP_06942801.1| ribonuclease HI [Vibrio cholerae RC385]
gi|125621681|gb|EAZ50010.1| ribonuclease HI [Vibrio cholerae V51]
gi|148874578|gb|EDL72713.1| ribonuclease HI [Vibrio cholerae 623-39]
gi|149741043|gb|EDM55112.1| ribonuclease HI [Vibrio cholerae MZO-2]
gi|150423406|gb|EDN15350.1| ribonuclease HI [Vibrio cholerae AM-19226]
gi|183012877|gb|EDT88177.1| ribonuclease HI [Vibrio cholerae MZO-3]
gi|229332536|gb|EEN98022.1| ribonuclease HI [Vibrio cholerae 12129(1)]
gi|229337818|gb|EEO02835.1| ribonuclease HI [Vibrio cholerae bv. albensis VL426]
gi|229341106|gb|EEO06111.1| ribonuclease HI [Vibrio cholerae TM 11079-80]
gi|229349058|gb|EEO14015.1| ribonuclease HI [Vibrio cholerae TMA 21]
gi|262031990|gb|EEY50567.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
gi|297534702|gb|EFH73538.1| ribonuclease HI [Vibrio cholerae RC385]
gi|327484752|gb|AEA79159.1| Ribonuclease HI [Vibrio cholerae LMA3894-4]
Length = 156
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 107/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN DLW + +A+H+V+ W+K
Sbjct: 63 CRVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|222111165|ref|YP_002553429.1| ribonuclease h [Acidovorax ebreus TPSY]
gi|221730609|gb|ACM33429.1| ribonuclease H [Acidovorax ebreus TPSY]
Length = 148
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 98/145 (67%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPGPGGWG +LR EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MNQVVIYTDGACKGNPGPGGWGAVLRSGTLEKELFGGELGTTNNRMELMAVIQALGALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC+V LY DS YV +G ++WI W++ GW+T+ + VKN++LW + E A H+++ +
Sbjct: 61 PCQVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHQAGHRIEWH 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W++GHAG+ NE+ D +A
Sbjct: 121 WVRGHAGDPGNERADMLANKGVEQA 145
>gi|91978489|ref|YP_571148.1| ribonuclease H [Rhodopseudomonas palustris BisB5]
gi|123721569|sp|Q131J2|RNH_RHOPS RecName: Full=Ribonuclease H; Short=RNase H
gi|91684945|gb|ABE41247.1| RNase HI [Rhodopseudomonas palustris BisB5]
Length = 150
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/146 (56%), Positives = 103/146 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R V +TDGACSGNPGPGGWG +L++ EK + GGE TTNNRMEL+AAI AL AL
Sbjct: 1 MRPVIIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEAHTTNNRMELLAAISALEALTR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LYTDS YV G WI W++NGWKT+DKK VKN+DLW + A H+V +W+
Sbjct: 61 PCTVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHEVRWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D++AR+ + K
Sbjct: 121 KGHAGHDENERADQLARDGLTKHRLK 146
>gi|27365233|ref|NP_760761.1| ribonuclease H [Vibrio vulnificus CMCP6]
gi|37680714|ref|NP_935323.1| ribonuclease H [Vibrio vulnificus YJ016]
gi|29839440|sp|Q8DBD5|RNH_VIBVU RecName: Full=Ribonuclease HI; Short=RNase HI
gi|56749446|sp|Q7MII6|RNH_VIBVY RecName: Full=Ribonuclease H; Short=RNase H
gi|27361380|gb|AAO10288.1| Ribonuclease HI [Vibrio vulnificus CMCP6]
gi|37199463|dbj|BAC95294.1| ribonuclease HI [Vibrio vulnificus YJ016]
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRYK EK ++ G + TTNNRME+MA I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVLRYKQVEKTLAQGYRLTTNNRMEMMATIVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + + +H +D W+K
Sbjct: 63 CNVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETTRHTIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARAAAEN 143
>gi|28870867|ref|NP_793486.1| ribonuclease HI [Pseudomonas syringae pv. tomato str. DC3000]
gi|213968848|ref|ZP_03396989.1| ribonuclease HI [Pseudomonas syringae pv. tomato T1]
gi|301384106|ref|ZP_07232524.1| ribonuclease H [Pseudomonas syringae pv. tomato Max13]
gi|302135018|ref|ZP_07261008.1| ribonuclease H [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|37999387|sp|Q87YT0|RNH_PSESM RecName: Full=Ribonuclease HI; Short=RNase HI
gi|28854116|gb|AAO57181.1| ribonuclease HI [Pseudomonas syringae pv. tomato str. DC3000]
gi|213926451|gb|EEB60005.1| ribonuclease HI [Pseudomonas syringae pv. tomato T1]
gi|331019244|gb|EGH99300.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 150
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|157831636|pdb|1KVC|A Chain A, E. Coli Ribonuclease Hi D134n Mutant
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ + +AR AA++
Sbjct: 122 KGHAGHPENERCNELARAAAMN 143
>gi|241760397|ref|ZP_04758492.1| ribonuclease HI [Neisseria flavescens SK114]
gi|241319275|gb|EER55753.1| ribonuclease HI [Neisseria flavescens SK114]
Length = 165
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 94/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGV +RY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 23 KPVYLYTDGACKGNPGAGGWGVFMRYGTHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G WI W++NGWKT+ KK VKN DLW + QH V W+K
Sbjct: 83 CQVVICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKNDDLWKELDSLVQQHDVRWTWVK 142
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 143 GHAGHPENEKADELANQGAAKF 164
>gi|311694694|gb|ADP97567.1| ribonuclease Hi chain A-like protein [marine bacterium HP15]
Length = 147
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGV+LRY K + GGE TTNNRMELMAAI+ L ALK PC
Sbjct: 4 KVTLYTDGACKGNPGPGGWGVVLRYGDNRKTLHGGETNTTNNRMELMAAIRGLEALKRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V L+TDS YV KG ++W+ W++NGWKTS KK VKN DLW + A+H+++ +W+KG
Sbjct: 64 EVELFTDSQYVRKGITEWMAGWKRNGWKTSAKKPVKNEDLWRELDAEVARHQINWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G +NE D +A
Sbjct: 124 HSGVPDNELADELANRGVDEL 144
>gi|320155617|ref|YP_004187996.1| ribonuclease HI [Vibrio vulnificus MO6-24/O]
gi|319930929|gb|ADV85793.1| ribonuclease HI [Vibrio vulnificus MO6-24/O]
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRYK EK ++ G + TTNNRME+MA I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVLRYKQVEKTLAQGYRLTTNNRMEMMATIVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + + +H +D W+K
Sbjct: 63 CNVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETTRHSIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARAAAEN 143
>gi|190149716|ref|YP_001968241.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307260898|ref|ZP_07542584.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307263025|ref|ZP_07544647.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189914847|gb|ACE61099.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|306869465|gb|EFN01256.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306871651|gb|EFN03373.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 153
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYFQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN +LW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNKELWIALDQEIQRHKIEWTWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 121 KGHSGHRENEICDELAKAGANN 142
>gi|261211354|ref|ZP_05925642.1| ribonuclease HI [Vibrio sp. RC341]
gi|260839309|gb|EEX65935.1| ribonuclease HI [Vibrio sp. RC341]
Length = 156
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W+ GWKT+DKK VKN DLW +A+H+V+ W+K
Sbjct: 63 CHVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|258450513|gb|ACV72186.1| ribonuclease H [uncultured organism]
Length = 161
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 105/143 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R V YTDGACSGNPGPGG+G +L + E+ ISG + TTNNRMELMAAI AL ALK P
Sbjct: 4 RRVVIYTDGACSGNPGPGGYGAILTFGDHEREISGSDPHTTNNRMELMAAIAALEALKKP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CKV L+TDS Y+ KG S WIK+W++NGW+T+D+K VKN DLW + A A+H+VD W++
Sbjct: 64 CKVELHTDSEYLQKGISTWIKQWKRNGWRTADRKPVKNADLWQRLDAALARHEVDWRWVR 123
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++AR A +
Sbjct: 124 GHVGHAMNERADQLARAAIGKAQ 146
>gi|171058653|ref|YP_001791002.1| ribonuclease H [Leptothrix cholodnii SP-6]
gi|170776098|gb|ACB34237.1| ribonuclease H [Leptothrix cholodnii SP-6]
Length = 160
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/144 (51%), Positives = 96/144 (66%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
EV YTDGAC GNPGPGGWG L G EK + GGE TTNNRME+MA I+AL +LK C
Sbjct: 17 EVVIYTDGACKGNPGPGGWGAWLVSGGHEKELCGGEANTTNNRMEMMAVIEALASLKRSC 76
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ +YTDS+YV G S WI W++ GWKT+D K VKN+DLW + S H+++ W+KG
Sbjct: 77 RITVYTDSAYVQNGISSWIHGWKRRGWKTADNKPVKNVDLWQRLDALSTLHQIEWRWVKG 136
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG+ NE+ D +A + +
Sbjct: 137 HAGDPGNERADALANRGVEVARAR 160
>gi|222833136|gb|EEE71613.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWGV+L K + GGE TTNNRME+MA I+AL+AL+ PC
Sbjct: 233 VVIYTDGACKGNPGPGGWGVVLEAGSARKELFGGELNTTNNRMEMMAVIEALSALRRPCD 292
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLYWIK 126
V+LY DS YV KG ++WI W+ GWKT+ K+ VKN++LW + H++D W+K
Sbjct: 293 VVLYIDSQYVLKGITEWIHGWKAKGWKTASKEPVKNVELWQRLDALVQGGGHRIDWRWVK 352
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ NE+ D +A
Sbjct: 353 GHAGDPGNERADALANKGVDQA 374
>gi|157831635|pdb|1KVB|A Chain A, E. Coli Ribonuclease Hi D134h Mutant
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ +AR AA++
Sbjct: 122 KGHAGHPENERCHELARAAAMN 143
>gi|165975882|ref|YP_001651475.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|303252666|ref|ZP_07338829.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307245255|ref|ZP_07527346.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307254202|ref|ZP_07536047.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307256469|ref|ZP_07538251.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307258667|ref|ZP_07540402.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|165875983|gb|ABY69031.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|302648634|gb|EFL78827.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306853899|gb|EFM86113.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306862902|gb|EFM94851.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306865099|gb|EFM97000.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306867324|gb|EFM99177.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 153
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN +LW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNKELWIALDQEIQRHKIEWTWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 121 KGHSGHRENEICDELAKAGANN 142
>gi|322514769|ref|ZP_08067793.1| ribonuclease H [Actinobacillus ureae ATCC 25976]
gi|322119265|gb|EFX91393.1| ribonuclease H [Actinobacillus ureae ATCC 25976]
Length = 153
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYFQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN DLW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNKDLWIALDQEIQRHKIEWSWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 121 KGHSGHRENEICDELAKAGANN 142
>gi|325983346|ref|YP_004295748.1| ribonuclease H [Nitrosomonas sp. AL212]
gi|325532865|gb|ADZ27586.1| Ribonuclease H [Nitrosomonas sp. AL212]
Length = 151
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/151 (49%), Positives = 102/151 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V YTDGAC GNPG GGWG LLRY E+ I GGEK TTNNRMEL+AAI+AL
Sbjct: 1 MIGNISKVVEIYTDGACKGNPGIGGWGALLRYGDHEREIFGGEKLTTNNRMELLAAIRAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+LK PCK+ L+TDS Y+ KG S+W+ W+ W T+DKK VKN DLW + + QH++
Sbjct: 61 ESLKRPCKIHLHTDSQYLQKGISEWLDSWKARNWCTADKKPVKNEDLWKLLDQLTQQHEI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W++GH+G+ +NE+ D++A ++
Sbjct: 121 EWCWVRGHSGHIDNERADQLANRGVEMIISE 151
>gi|296101379|ref|YP_003611525.1| RNase HI [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295055838|gb|ADF60576.1| RNase HI [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G ++RY+ EK S G TTNNRMELMAAI AL ALK
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKEH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH + W+K
Sbjct: 63 CDVVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHNIKWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARTAAAN 143
>gi|170292440|pdb|2YV0|X Chain X, Structural And Thermodynamic Analyses Of E. Coli
Ribonuclease Hi Variant With Quintuple Thermostabilizing
Mutations
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+ +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYAAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS Y+ +G +QWI W++ GWKT+D K VKN+DLW + A QH++ W+
Sbjct: 62 PCEVILSTDSQYLRQGITQWIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ +AR AA++
Sbjct: 122 KGHAGHPENERCHELARAAAMN 143
>gi|152987448|ref|YP_001348840.1| ribonuclease H [Pseudomonas aeruginosa PA7]
gi|189043702|sp|A6V705|RNH_PSEA7 RecName: Full=Ribonuclease H; Short=RNase H
gi|150962606|gb|ABR84631.1| ribonuclease H [Pseudomonas aeruginosa PA7]
Length = 148
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/141 (52%), Positives = 97/141 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPG GGWG LL YKG E+ + GGE +TTNNRMELMAAI+AL ALK C
Sbjct: 6 QVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRSC 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ L TDS YV +G ++W+ W++ GWKT+ K+ VKN DLW E A+H+V+ W++G
Sbjct: 66 PIRLVTDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVRG 125
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H G+ NE+ D++A
Sbjct: 126 HTGDPGNERADQLANRGVAEL 146
>gi|330959401|gb|EGH59661.1| ribonuclease H [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 150
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMPNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|160286380|pdb|2Z1J|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115KN143K
T145K)
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/144 (56%), Positives = 106/144 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPGPGG+G +LRY+G+EK S G + TTNNRMELMAAI AL ALK
Sbjct: 2 LKRVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYERTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV KG ++WI W++ GWK +DKK VKN+DLW + A +HK+ W+
Sbjct: 62 HCEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGRHKIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+ D +AR AA+ K
Sbjct: 122 KGHAGHPENERCDELARAAAMKPK 145
>gi|217970690|ref|YP_002355924.1| ribonuclease H [Thauera sp. MZ1T]
gi|217508017|gb|ACK55028.1| Ribonuclease H [Thauera sp. MZ1T]
Length = 152
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 99/145 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGACSGNPGPGGWG +LR EK I GGE TTNNRMEL+A I+AL ALK
Sbjct: 1 MEEVDIYTDGACSGNPGPGGWGAILRSGSHEKEIWGGEPATTNNRMELLAVIRALDALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P ++TDS YV KG S+WI W+ GWKT+ K+ VKN DLW +A+++H+V W+
Sbjct: 61 PVAARVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWRALDDAASRHQVKWLWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
+GH G+ ENE+ D +AR + +
Sbjct: 121 RGHNGHPENERADALARRGVDAVRK 145
>gi|242277655|ref|YP_002989784.1| ribonuclease H [Desulfovibrio salexigens DSM 2638]
gi|242120549|gb|ACS78245.1| ribonuclease H [Desulfovibrio salexigens DSM 2638]
Length = 154
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDG+C GNPG GG+G +L + K +S G K+TTNNRME+ A I ALT LK P
Sbjct: 4 KKLTIYTDGSCLGNPGKGGYGAVLLFNEHRKELSQGYKKTTNNRMEMRAVIAALTELKEP 63
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LYTDS YV F++ WQ+NGWKT+ KK VKN DLW++F+ +H V W+
Sbjct: 64 CEVTLYTDSQYVKNAFTKKWIDNWQKNGWKTAAKKPVKNKDLWLQFIPLLEKHDVTFRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA S
Sbjct: 124 KGHAGDPENERCDDLARTAASS 145
>gi|323137849|ref|ZP_08072924.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
gi|322396852|gb|EFX99378.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
Length = 152
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/138 (55%), Positives = 99/138 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDGACSGNPGPGGWG +LR+ EK ISGGE TTNNRMELMAAI AL AL P
Sbjct: 3 KRVSIWTDGACSGNPGPGGWGAILRFGEHEKEISGGEPLTTNNRMELMAAIMALEALTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS Y+ G + WIK W+ GW+T+D+K VKN++LW + A +H V +W+K
Sbjct: 63 CVIDLYTDSQYLRGGVTSWIKGWKARGWRTADRKPVKNVELWQRLEAAEERHDVHWHWVK 122
Query: 127 GHAGNQENEKVDRIARNA 144
GH+G++ N++ D +AR
Sbjct: 123 GHSGHEMNDRADALARAG 140
>gi|262393545|ref|YP_003285399.1| ribonuclease HI [Vibrio sp. Ex25]
gi|262337139|gb|ACY50934.1| ribonuclease HI [Vibrio sp. Ex25]
Length = 154
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK +S G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLKQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CKV L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+V+ +W+K
Sbjct: 63 CKVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEICDELARTAAEN 143
>gi|157831219|pdb|1GOA|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 107/143 (74%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C+V+L TDS YV +G +Q WI W++ GWKT+DKK VKN+DLW + A QH++ W
Sbjct: 62 HCEVILSTDSQYVRQGITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHAG+ ENE+ D +AR AA++
Sbjct: 122 VKGHAGHPENERCDELARAAAMN 144
>gi|157833658|pdb|1RDA|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +T+G+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTNGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|157831221|pdb|1GOC|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/143 (56%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C+V+L TDS YV + +Q WI W++ GWKT+DKK VKN+DLW + A QH++ W
Sbjct: 62 HCEVILSTDSQYVRQAITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHAG+ ENE+ D +AR AA++
Sbjct: 122 VKGHAGHPENERCDELARAAAMN 144
>gi|319898106|ref|YP_004136303.1| ribonuclease hi [Haemophilus influenzae F3031]
gi|317433612|emb|CBY81996.1| ribonuclease HI [Haemophilus influenzae F3031]
Length = 154
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFKTTNNRMELRAVIEALNTLKES 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 123 GHAGHRENEICDELAKKGAEN 143
>gi|56966979|pdb|1WSI|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966980|pdb|1WSI|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966981|pdb|1WSI|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966982|pdb|1WSI|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|61680237|pdb|1WSG|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680238|pdb|1WSG|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680239|pdb|1WSG|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680240|pdb|1WSG|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRM LMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMALMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ + +AR AA++
Sbjct: 122 KGHAGHPENERCNELARAAAMN 143
>gi|146310411|ref|YP_001175485.1| ribonuclease H [Enterobacter sp. 638]
gi|189043690|sp|A4W6V4|RNH_ENT38 RecName: Full=Ribonuclease H; Short=RNase H
gi|145317287|gb|ABP59434.1| RNase HI [Enterobacter sp. 638]
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 103/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRY+G EK + G TTNNRMELMAAI AL ALK
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFNEGYHLTTNNRMELMAAIVALEALKED 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A + H + W+K
Sbjct: 63 CDVVISTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHTIKWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA++
Sbjct: 123 GHAGHPENERCDELARAAAMN 143
>gi|160286373|pdb|2Z1G|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105K)
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPGPGG+G +LRY+G+EK S G + TTNNRMELMAAI AL ALK
Sbjct: 2 LKRVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYERTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV KG ++WI W++ GWK +DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|56966983|pdb|1WSJ|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966984|pdb|1WSJ|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966985|pdb|1WSJ|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966986|pdb|1WSJ|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966987|pdb|1WSJ|E Chain E, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966988|pdb|1WSJ|F Chain F, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966989|pdb|1WSJ|G Chain G, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966990|pdb|1WSJ|H Chain H, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KG AG+ ENE+ D +AR AA++
Sbjct: 122 KGAAGHPENERCDELARAAAMN 143
>gi|229845440|ref|ZP_04465570.1| ribonuclease H [Haemophilus influenzae 6P18H1]
gi|229811636|gb|EEP47335.1| ribonuclease H [Haemophilus influenzae 6P18H1]
Length = 154
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKTLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWKALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 123 GHAGHRENEICDELAKKGAEN 143
>gi|157831634|pdb|1KVA|A Chain A, E. Coli Ribonuclease Hi D134a Mutant
Length = 155
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ +AR AA++
Sbjct: 122 KGHAGHPENERCAELARAAAMN 143
>gi|308049180|ref|YP_003912746.1| RNase HI [Ferrimonas balearica DSM 9799]
gi|307631370|gb|ADN75672.1| RNase HI [Ferrimonas balearica DSM 9799]
Length = 156
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/139 (52%), Positives = 100/139 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+G++L YK K + G + TTNNRME+MAA++ L L P
Sbjct: 5 KRVTLYTDGSCLGNPGPGGYGIVLIYKRHRKEVGYGYQHTTNNRMEMMAALQGLALLTEP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V LYTDS Y+ +G +QWI W++NGWKT+ K+ VKN+DLW A+H++D +W+K
Sbjct: 65 CQVSLYTDSQYLRQGITQWIHGWKRNGWKTAAKEPVKNVDLWQALDAQVARHEIDWHWVK 124
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ NE+ D +AR AA
Sbjct: 125 GHAGDPNNERCDELARTAA 143
>gi|307249646|ref|ZP_07531632.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306858344|gb|EFM90414.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 153
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 100/142 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL AAI+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYLQTTNNRMELRAAIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN +LW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNKELWIALDQEIQRHKIEWTWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 121 KGHSGHRENEICDELAKAGANN 142
>gi|146282600|ref|YP_001172753.1| ribonuclease H [Pseudomonas stutzeri A1501]
gi|187611395|sp|A4VLR0|RNH_PSEU5 RecName: Full=Ribonuclease H; Short=RNase H
gi|145570805|gb|ABP79911.1| ribonuclease H [Pseudomonas stutzeri A1501]
gi|327480857|gb|AEA84167.1| ribonuclease H [Pseudomonas stutzeri DSM 4166]
Length = 151
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 98/143 (68%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWG LL YKG ++ + GGE +TTNNRMELMAAI+AL LK PCK
Sbjct: 6 VEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDTTNNRMELMAAIRALAELKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS YV +G + W+ W++ GWKT+ K+ VKN DLW + E +H+V W++GH
Sbjct: 66 VRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHEVSWQWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
G+ NE+ D +A V K +
Sbjct: 126 TGHPGNEQADLLANRGVVQAKRQ 148
>gi|289679440|ref|ZP_06500330.1| ribonuclease H [Pseudomonas syringae pv. syringae FF5]
gi|330975086|gb|EGH75152.1| ribonuclease H [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 150
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|209966893|ref|YP_002299808.1| ribonuclease H [Rhodospirillum centenum SW]
gi|209960359|gb|ACJ00996.1| ribonuclease H [Rhodospirillum centenum SW]
Length = 153
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/138 (58%), Positives = 101/138 (73%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGWG +LR+KG EK + GGE+ TTNNRMELMAAI+AL ALK P
Sbjct: 8 VDIYTDGACSGNPGPGGWGAILRWKGTEKELKGGERLTTNNRMELMAAIQALEALKRPVT 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+TDS YV G + WI W++NGWKT+ + VKN DLW + E +H V+ +W+KGH
Sbjct: 68 VRLHTDSQYVKNGITTWIHGWKKNGWKTAGRDPVKNADLWQRLDELVGRHTVEFHWVKGH 127
Query: 129 AGNQENEKVDRIARNAAV 146
AG+ ENE+ D++AR
Sbjct: 128 AGHPENERADQLAREGMR 145
>gi|91223499|ref|ZP_01258764.1| ribonuclease H [Vibrio alginolyticus 12G01]
gi|269966276|ref|ZP_06180365.1| Ribonuclease HI [Vibrio alginolyticus 40B]
gi|91191585|gb|EAS77849.1| ribonuclease H [Vibrio alginolyticus 12G01]
gi|269829191|gb|EEZ83436.1| Ribonuclease HI [Vibrio alginolyticus 40B]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK +S G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLKQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
CKV L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+V+ +W+K
Sbjct: 63 CKVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARTAAEN 143
>gi|61680233|pdb|1WSF|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(D134a) With Mn2+
gi|61680234|pdb|1WSF|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(D134a) With Mn2+
gi|61680235|pdb|1WSF|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(D134a) With Mn2+
gi|61680236|pdb|1WSF|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(D134a) With Mn2+
Length = 155
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ +AR AA++
Sbjct: 122 KGHAGHPENERCAELARAAAMN 143
>gi|330984381|gb|EGH82484.1| Ribonuclease H [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 330
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 99/145 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
E+ YTDGAC GNPGPGGWG +L ++ + GG ETTNN+MEL+AAI+AL ALK P
Sbjct: 3 NEILIYTDGACKGNPGPGGWGAILVAGENQREMHGGTLETTNNQMELLAAIEALEALKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS Y+ G S+WI W++NGW+T +KK VKN+DLW + E ++H V W++
Sbjct: 63 CSVKLYTDSQYLIDGSSKWIHGWKRNGWRTKEKKPVKNMDLWQRMDEQLSRHDVRFVWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH+G+ NE+ D +A + N+
Sbjct: 123 GHSGDPLNERADALANLGCQPYLNQ 147
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V AYTDG+C GGWGV++ +G+E +SGG TTNNRME+MAAI AL ++
Sbjct: 182 QVVAYTDGSCLK-SKAGGWGVVIIDQGQEYELSGGAAGTTNNRMEMMAAISALLSISPER 240
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ TDS Y+ KG + I W++ W+ +D +KN+DLW + +V W+KG
Sbjct: 241 PTVIVTDSEYLKKGIEEHIHTWKEKNWRKADGGPIKNLDLWKQLDAMCLNRQVVWKWVKG 300
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H+ ++ N+ DR+A + + ++
Sbjct: 301 HSNDKYNDWADRLATTESKAIQD 323
>gi|66045008|ref|YP_234849.1| ribonuclease H [Pseudomonas syringae pv. syringae B728a]
gi|75502659|sp|Q4ZVL1|RNH_PSEU2 RecName: Full=Ribonuclease H; Short=RNase H
gi|63255715|gb|AAY36811.1| RNase H [Pseudomonas syringae pv. syringae B728a]
gi|330952813|gb|EGH53073.1| ribonuclease H [Pseudomonas syringae Cit 7]
gi|330972573|gb|EGH72639.1| ribonuclease H [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 150
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|28899067|ref|NP_798672.1| ribonuclease H [Vibrio parahaemolyticus RIMD 2210633]
gi|260876851|ref|ZP_05889206.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|260899808|ref|ZP_05908203.1| ribonuclease HI [Vibrio parahaemolyticus AQ4037]
gi|31076862|sp|Q87MG2|RNH_VIBPA RecName: Full=Ribonuclease HI; Short=RNase HI
gi|28807291|dbj|BAC60556.1| ribonuclease HI [Vibrio parahaemolyticus RIMD 2210633]
gi|308091477|gb|EFO41172.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|308107271|gb|EFO44811.1| ribonuclease HI [Vibrio parahaemolyticus AQ4037]
gi|328474396|gb|EGF45201.1| ribonuclease H [Vibrio parahaemolyticus 10329]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK +S G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+VD +W+K
Sbjct: 63 CRVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVDWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEICDELARTAAEN 143
>gi|325679327|ref|ZP_08158912.1| ribonuclease HI [Ruminococcus albus 8]
gi|324108924|gb|EGC03155.1| ribonuclease HI [Ruminococcus albus 8]
Length = 157
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDGACSGNPGPGG+G +LR+ K + GG+ +TTNNRME+MA IK L ALK
Sbjct: 1 MKKIEIFTDGACSGNPGPGGYGTILRFNDITKELYGGDPKTTNNRMEMMAVIKGLQALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C++ LY+DS YV ++ + W++ GW SDKK N DLW ++ A HKV W
Sbjct: 61 SCEITLYSDSQYVINAITKGWAEGWKKRGWVKSDKKPALNSDLWEIILQLLAVHKVSFVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGHAG+ ENE+ D +A + K
Sbjct: 121 VKGHAGHPENERCDHLAVTGSQEAKK 146
>gi|323526834|ref|YP_004228987.1| Ribonuclease H [Burkholderia sp. CCGE1001]
gi|323383836|gb|ADX55927.1| Ribonuclease H [Burkholderia sp. CCGE1001]
Length = 148
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK PC+
Sbjct: 6 IDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEANTTNNRMELMGVISALEALKRPCQ 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+++TDS YV KG S+WI W++ GW T+ K+ VKN DLW + AQH+V W++GH
Sbjct: 66 VVVHTDSQYVQKGISEWIHGWKKKGWVTAAKQPVKNADLWKRLDALVAQHEVQWRWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
G+ ENE+ D++A S
Sbjct: 126 NGHPENERADQLANRGVASL 145
>gi|262404570|ref|ZP_06081125.1| ribonuclease HI [Vibrio sp. RC586]
gi|262349602|gb|EEY98740.1| ribonuclease HI [Vibrio sp. RC586]
Length = 156
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 107/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN DLW +A+H+V+ W+K
Sbjct: 63 CQVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR+AA +
Sbjct: 123 GHAGHRENEMCDELARSAAEN 143
>gi|15601972|ref|NP_245044.1| ribonuclease H [Pasteurella multocida subsp. multocida str. Pm70]
gi|13431827|sp|P57813|RNH_PASMU RecName: Full=Ribonuclease HI; Short=RNase HI
gi|12720319|gb|AAK02191.1| Rnh [Pasteurella multocida subsp. multocida str. Pm70]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG GVLLRYK EK IS G TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGPGGIGVLLRYKQHEKQISAGYFLTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L++DS Y+ G ++WI W++N WK S K VKN DLW++ +A +H ++ W+K
Sbjct: 63 CSVTLHSDSQYMKNGITKWIFNWKKNNWKASTGKPVKNQDLWIQLDQAIQRHHINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE D++A+ A +
Sbjct: 123 GHSGHIENEICDQLAKAGAEN 143
>gi|148979852|ref|ZP_01815730.1| ribonuclease H [Vibrionales bacterium SWAT-3]
gi|145961544|gb|EDK26845.1| ribonuclease H [Vibrionales bacterium SWAT-3]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKKVEKTLAQGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKT+DKK VKN DLW K + +A+H VD W+K
Sbjct: 63 CSVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQKLDKETARHTVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARTAAEN 143
>gi|257095468|ref|YP_003169109.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257047992|gb|ACV37180.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 160
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 97/142 (68%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ + DG C GNPGPGGWGV+L+ EK + GGE +TTNNRME+ AAI+AL ALK P
Sbjct: 7 ITIFADGGCRGNPGPGGWGVVLQAGEHEKELWGGEPDTTNNRMEMTAAIRALEALKRPAS 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+TDS Y+ KG S+WI W++NGW+T+DKK VKN DLW + E + +H++ W+KGH
Sbjct: 67 VRLHTDSQYLQKGISEWIHNWKRNGWRTADKKPVKNADLWQRLDELAGEHRIQWCWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
AG+ NE+ D +A +
Sbjct: 127 AGHSGNERADALANRGMDELQR 148
>gi|145628969|ref|ZP_01784768.1| ribonuclease H [Haemophilus influenzae 22.1-21]
gi|145641464|ref|ZP_01797042.1| ribonuclease H [Haemophilus influenzae R3021]
gi|144978472|gb|EDJ88195.1| ribonuclease H [Haemophilus influenzae 22.1-21]
gi|145273755|gb|EDK13623.1| ribonuclease H [Haemophilus influenzae 22.4-21]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 123 GHAGHRENEICDELAKKGAEN 143
>gi|68248746|ref|YP_247858.1| ribonuclease H [Haemophilus influenzae 86-028NP]
gi|148827279|ref|YP_001292032.1| ribonuclease H [Haemophilus influenzae PittGG]
gi|229847256|ref|ZP_04467359.1| ribonuclease H [Haemophilus influenzae 7P49H1]
gi|319775990|ref|YP_004138478.1| ribonuclease HI [Haemophilus influenzae F3047]
gi|81336839|sp|Q4QP49|RNH_HAEI8 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043698|sp|A5UFU3|RNH_HAEIG RecName: Full=Ribonuclease H; Short=RNase H
gi|68056945|gb|AAX87198.1| ribonuclease HI [Haemophilus influenzae 86-028NP]
gi|148718521|gb|ABQ99648.1| ribonuclease H [Haemophilus influenzae PittGG]
gi|229809799|gb|EEP45522.1| ribonuclease H [Haemophilus influenzae 7P49H1]
gi|301168791|emb|CBW28382.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Haemophilus
influenzae 10810]
gi|317450581|emb|CBY86798.1| ribonuclease HI [Haemophilus influenzae F3047]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +A+ A +
Sbjct: 123 GHAGHRENEICDELAKKGAEN 143
>gi|300691207|ref|YP_003752202.1| ribonuclease H (RNase H) [Ralstonia solanacearum PSI07]
gi|299078267|emb|CBJ50915.1| Ribonuclease H (RNase H) [Ralstonia solanacearum PSI07]
Length = 151
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 95/144 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV Y+DGAC GNPG GGWG +L G EK + GGE TTNNRMELMA I+A ALK
Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V +YTDS YV KG S+W+ W+ GWKT+DKK VKN DLW E H+V +W+
Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVTAHEVSWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE D +A +
Sbjct: 121 KGHAGHPGNEHADALANKGVEMAR 144
>gi|15597012|ref|NP_250506.1| ribonuclease H [Pseudomonas aeruginosa PAO1]
gi|116049765|ref|YP_791428.1| ribonuclease H [Pseudomonas aeruginosa UCBPP-PA14]
gi|218892231|ref|YP_002441098.1| ribonuclease H [Pseudomonas aeruginosa LESB58]
gi|254234909|ref|ZP_04928232.1| ribonuclease H [Pseudomonas aeruginosa C3719]
gi|254240208|ref|ZP_04933530.1| ribonuclease H [Pseudomonas aeruginosa 2192]
gi|296389794|ref|ZP_06879269.1| ribonuclease H [Pseudomonas aeruginosa PAb1]
gi|313110513|ref|ZP_07796398.1| ribonuclease H [Pseudomonas aeruginosa 39016]
gi|21362890|sp|Q9I2S9|RNH_PSEAE RecName: Full=Ribonuclease HI; Short=RNase HI
gi|122258876|sp|Q02KV8|RNH_PSEAB RecName: Full=Ribonuclease H; Short=RNase H
gi|226736836|sp|B7VB62|RNH_PSEA8 RecName: Full=Ribonuclease H; Short=RNase H
gi|9947800|gb|AAG05204.1|AE004608_3 ribonuclease H [Pseudomonas aeruginosa PAO1]
gi|115584986|gb|ABJ11001.1| ribonuclease H [Pseudomonas aeruginosa UCBPP-PA14]
gi|126166840|gb|EAZ52351.1| ribonuclease H [Pseudomonas aeruginosa C3719]
gi|126193586|gb|EAZ57649.1| ribonuclease H [Pseudomonas aeruginosa 2192]
gi|218772457|emb|CAW28239.1| ribonuclease H [Pseudomonas aeruginosa LESB58]
gi|310882900|gb|EFQ41494.1| ribonuclease H [Pseudomonas aeruginosa 39016]
Length = 148
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/141 (52%), Positives = 97/141 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPG GGWG LL YKG E+ + GGE +TTNNRMELMAAI+AL ALK C
Sbjct: 6 QVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRSC 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ L TDS YV +G ++W+ W++ GWKT+ K+ VKN DLW E A+H+V+ W++G
Sbjct: 66 PIRLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVRG 125
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H G+ NE+ D++A
Sbjct: 126 HTGDPGNERADQLANRGVAEL 146
>gi|20150576|pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Free Variant Of E.
Coli Rnase Hi
Length = 155
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+ GNPGPGG+G +LRY+G+EK S G TTNNRMELMAA AL ALK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAAVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERADELARAAAMN 143
>gi|15642232|ref|NP_231865.1| ribonuclease H [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121586236|ref|ZP_01676026.1| ribonuclease HI [Vibrio cholerae 2740-80]
gi|121726567|ref|ZP_01679816.1| ribonuclease HI [Vibrio cholerae V52]
gi|147675243|ref|YP_001217750.1| ribonuclease H [Vibrio cholerae O395]
gi|153213821|ref|ZP_01949029.1| ribonuclease HI [Vibrio cholerae 1587]
gi|153817118|ref|ZP_01969785.1| ribonuclease HI [Vibrio cholerae NCTC 8457]
gi|153820802|ref|ZP_01973469.1| ribonuclease HI [Vibrio cholerae B33]
gi|227082358|ref|YP_002810909.1| ribonuclease HI [Vibrio cholerae M66-2]
gi|229507691|ref|ZP_04397196.1| ribonuclease HI [Vibrio cholerae BX 330286]
gi|229512114|ref|ZP_04401593.1| ribonuclease HI [Vibrio cholerae B33]
gi|229519249|ref|ZP_04408692.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229607195|ref|YP_002877843.1| ribonuclease H [Vibrio cholerae MJ-1236]
gi|254849365|ref|ZP_05238715.1| ribonuclease HI [Vibrio cholerae MO10]
gi|255747068|ref|ZP_05421013.1| ribonuclease HI [Vibrio cholera CIRS 101]
gi|262161387|ref|ZP_06030497.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
gi|262167743|ref|ZP_06035445.1| ribonuclease HI [Vibrio cholerae RC27]
gi|298500391|ref|ZP_07010196.1| ribonuclease HI [Vibrio cholerae MAK 757]
gi|21362893|sp|Q9KPX8|RNH_VIBCH RecName: Full=Ribonuclease HI; Short=RNase HI
gi|189043720|sp|A5F633|RNH_VIBC3 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808029|sp|C3LPN8|RNH_VIBCM RecName: Full=Ribonuclease H; Short=RNase H
gi|9656793|gb|AAF95378.1| ribonuclease HI [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121549502|gb|EAX59528.1| ribonuclease HI [Vibrio cholerae 2740-80]
gi|121631020|gb|EAX63399.1| ribonuclease HI [Vibrio cholerae V52]
gi|124115745|gb|EAY34565.1| ribonuclease HI [Vibrio cholerae 1587]
gi|126512386|gb|EAZ74980.1| ribonuclease HI [Vibrio cholerae NCTC 8457]
gi|126521594|gb|EAZ78817.1| ribonuclease HI [Vibrio cholerae B33]
gi|146317126|gb|ABQ21665.1| ribonuclease HI [Vibrio cholerae O395]
gi|227010246|gb|ACP06458.1| ribonuclease HI [Vibrio cholerae M66-2]
gi|227014130|gb|ACP10340.1| ribonuclease HI [Vibrio cholerae O395]
gi|229343938|gb|EEO08913.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229352079|gb|EEO17020.1| ribonuclease HI [Vibrio cholerae B33]
gi|229355196|gb|EEO20117.1| ribonuclease HI [Vibrio cholerae BX 330286]
gi|229369850|gb|ACQ60273.1| ribonuclease HI [Vibrio cholerae MJ-1236]
gi|254845070|gb|EET23484.1| ribonuclease HI [Vibrio cholerae MO10]
gi|255735470|gb|EET90870.1| ribonuclease HI [Vibrio cholera CIRS 101]
gi|262023808|gb|EEY42507.1| ribonuclease HI [Vibrio cholerae RC27]
gi|262028698|gb|EEY47352.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
gi|297541084|gb|EFH77138.1| ribonuclease HI [Vibrio cholerae MAK 757]
Length = 156
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 107/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G+++RYK EK ++ G + TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W+ GWKT+DKK VKN DLW + +A+H+V+ W+K
Sbjct: 63 CRVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|254491285|ref|ZP_05104466.1| RNase H [Methylophaga thiooxidans DMS010]
gi|224463798|gb|EEF80066.1| RNase H [Methylophaga thiooxydans DMS010]
Length = 145
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 100/143 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDGACSGNPGPGGWG +LR G EK +SG EK+TTNNRME+MA I AL ALK
Sbjct: 1 MDHVEIFTDGACSGNPGPGGWGAILRSSGTEKELSGSEKQTTNNRMEMMAVIVALEALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V + TDS YV KG ++W+ W+ WKT+ KK VKN++LW + A QH+V+ W+
Sbjct: 61 PCRVTITTDSQYVIKGMTEWLPGWKAKNWKTAAKKPVKNVELWQRLDNAINQHEVEWQWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ ENE+ D++A A
Sbjct: 121 RGHQGHVENERADQLAVRAREQI 143
>gi|239815323|ref|YP_002944233.1| ribonuclease H [Variovorax paradoxus S110]
gi|239801900|gb|ACS18967.1| ribonuclease H [Variovorax paradoxus S110]
Length = 149
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGAC GNPGPGGWG L+ EK + GGE TTNNRMEL A I+ L ALK
Sbjct: 1 MNEVVIYTDGACKGNPGPGGWGAWLKSGATEKELFGGELNTTNNRMELTAVIEGLAALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PCKV+LY DS YV G ++WI+ W+ GW+TS K+ VKN++LW K + A H ++
Sbjct: 61 PCKVILYLDSQYVRMGITEWIRGWKAKGWRTSTKQPVKNVELWQKLDKLVAEGGHVIEWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+KGH+G+ NE+ D +A +I
Sbjct: 121 WVKGHSGDVGNERADMLANKGVDKALGRI 149
>gi|291543457|emb|CBL16566.1| RNase HI [Ruminococcus sp. 18P13]
Length = 144
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGG+GV+LR+ EK +SGGE TTNNRMELM I L+ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGYGVVLRFGTVEKELSGGEPNTTNNRMELMGVITGLSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V L TDS YV ++ W++ GW SDKK N+DLW + + +H+V W
Sbjct: 61 PCDVTLTTDSKYVVDSITKGWVYGWKRKGWIKSDKKPALNVDLWERLLPLLERHQVQFVW 120
Query: 125 IKGHAGNQENEKVDRIARN 143
+KGHAG+ ENE+ D +A
Sbjct: 121 VKGHAGHPENERCDALAVA 139
>gi|16127595|ref|NP_422159.1| ribonuclease HI [Caulobacter crescentus CB15]
gi|221236412|ref|YP_002518849.1| ribonuclease H [Caulobacter crescentus NA1000]
gi|21362889|sp|Q9A341|RNH_CAUCR RecName: Full=Ribonuclease HI; Short=RNase HI
gi|254808023|sp|B8H4W7|RNH_CAUCN RecName: Full=Ribonuclease H; Short=RNase H
gi|13425071|gb|AAK25327.1| ribonuclease HI [Caulobacter crescentus CB15]
gi|220965585|gb|ACL96941.1| ribonuclease HI [Caulobacter crescentus NA1000]
Length = 149
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 80/145 (55%), Positives = 97/145 (66%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWG +L Y K+K I GGE TTNNRMELMAAI+AL L PC
Sbjct: 4 KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS YV KG +WI+ W+ GWKT+DK VKN DLW + A A+H VD W+KG
Sbjct: 64 VVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HAG+ NE+ D +A ++
Sbjct: 124 HAGHPLNERADALANEGLRQANPRV 148
>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
Length = 577
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKA 59
++ K + A+TDGAC GNPGPGGWG L G++ GG+ TTNN+MELM AI A
Sbjct: 4 LNPKPNTTI-AFTDGACKGNPGPGGWGAFLVLSDGQQIEYFGGDAHTTNNKMELMGAIIA 62
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L + + ++TDSSYV G + WI+ W+ GWKTS K VKN +LW + A
Sbjct: 63 LEKSPHDQHLEIWTDSSYVKDGITSWIQGWKNKGWKTSGNKPVKNKELWQRLDALQASRD 122
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V +W+KGHAG++ NEK D +A +S
Sbjct: 123 VSWHWVKGHAGHEGNEKADELANRGILS 150
>gi|223938769|ref|ZP_03630658.1| Ribonuclease H [bacterium Ellin514]
gi|223892620|gb|EEF59092.1| Ribonuclease H [bacterium Ellin514]
Length = 197
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 78/148 (52%), Positives = 102/148 (68%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
K L++V +TDGAC GNPGPGGW +L + ++ +SGG TTNNRMEL AAI+ALTA
Sbjct: 13 RKQLKKVTIHTDGACHGNPGPGGWAAILEFGPHKRELSGGAPATTNNRMELQAAIEALTA 72
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK PC+V +TDS Y+ +G S WI W++NGW+T DKK VKN +LW A A+HK+
Sbjct: 73 LKEPCEVDFFTDSEYLRQGVSGWIWNWKRNGWRTKDKKPVKNDELWRLLDTAVARHKISW 132
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
+W+KGHAGN NE+ D +A +A K
Sbjct: 133 HWVKGHAGNTGNERCDVLATDAIAHIKK 160
>gi|329900786|ref|ZP_08272590.1| Ribonuclease HI [Oxalobacteraceae bacterium IMCC9480]
gi|327549375|gb|EGF33943.1| Ribonuclease HI [Oxalobacteraceae bacterium IMCC9480]
Length = 144
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 97/144 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGAC GNPG GGWG L EK + GGE++TTNNRMEL A I+ALTAL+
Sbjct: 1 MEKVEIYTDGACKGNPGRGGWGAWLVAGTNEKELFGGERDTTNNRMELKAVIEALTALRR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+++TDS YV KG S+WI W++ GWKT+ ++ VKN+DLW A H++ W+
Sbjct: 61 PCDVIVHTDSQYVQKGISEWINGWKKRGWKTAAREPVKNVDLWQALDLAQQMHQIQWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH+G+ NE+ D +A S +
Sbjct: 121 RGHSGHVGNERADVLANRGVDSIR 144
>gi|297250855|ref|ZP_06934321.1| ribonuclease HI [Neisseria polysaccharea ATCC 43768]
gi|296837887|gb|EFH21825.1| ribonuclease HI [Neisseria polysaccharea ATCC 43768]
Length = 174
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Query: 5 HL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ + V+ YTDGAC GNPGPGGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +L
Sbjct: 29 NMDKTVYLYTDGACKGNPGPGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSL 88
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V
Sbjct: 89 KRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWT 148
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ ENE+ D +A A F
Sbjct: 149 WVKGHAGHAENERADDLANRGAAQF 173
>gi|163854936|ref|YP_001629234.1| ribonuclease H [Bordetella petrii DSM 12804]
gi|163258664|emb|CAP40963.1| rnhA [Bordetella petrii]
Length = 159
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/144 (51%), Positives = 99/144 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V +TDGAC GNPGPGGWGVL+R EK + GGE TTNNRMEL+A I+ L LK PC
Sbjct: 12 QVEMWTDGACKGNPGPGGWGVLMRAGAHEKTLHGGEAGTTNNRMELLAVIEGLRTLKRPC 71
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V+++TDS YV KG ++W+ W++ GW T+DKK VKN +LW E A+HKV W++G
Sbjct: 72 QVVIHTDSQYVMKGMTEWLANWKRRGWLTADKKPVKNAELWQALDEQVARHKVSWRWVRG 131
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG+ NE+ D +A S + +
Sbjct: 132 HAGDPGNERADALANLGVESLRKR 155
>gi|302187968|ref|ZP_07264641.1| ribonuclease H [Pseudomonas syringae pv. syringae 642]
Length = 150
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMANWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|307730501|ref|YP_003907725.1| Ribonuclease H [Burkholderia sp. CCGE1003]
gi|307585036|gb|ADN58434.1| Ribonuclease H [Burkholderia sp. CCGE1003]
Length = 148
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 98/140 (70%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK PCK
Sbjct: 6 IDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEANTTNNRMELMGVISALEALKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+++TDS YV KG S+WI W++ GW T+ ++ VKN DLW + AQH+V+ W++GH
Sbjct: 66 VVVHTDSQYVQKGISEWIHGWKKKGWVTAARQPVKNADLWKRLDALVAQHEVEWRWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
G+ ENE+ D++A S
Sbjct: 126 NGHPENERADQLANRGVASL 145
>gi|87199107|ref|YP_496364.1| RNase HI [Novosphingobium aromaticivorans DSM 12444]
gi|123749889|sp|Q2G9E3|RNH_NOVAD RecName: Full=Ribonuclease H; Short=RNase H
gi|87134788|gb|ABD25530.1| RNase HI [Novosphingobium aromaticivorans DSM 12444]
Length = 143
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 84/143 (58%), Positives = 106/143 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPG GGWG LLR EK ++G EKETTNNRMELMAAI+AL ALK
Sbjct: 1 MKHVEIFTDGACKGNPGKGGWGALLRMGEHEKEMAGSEKETTNNRMELMAAIRALEALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV G ++WI WQ+ GWKT+D K VKN DLW V+A HKV+ W+
Sbjct: 61 PCRVTLHTDSKYVLDGITKWIFGWQKKGWKTADNKPVKNEDLWRALVDAVRPHKVEWVWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH G+ ENE+VD++A +AA++
Sbjct: 121 KGHDGHPENERVDKLASDAALAA 143
>gi|160286377|pdb|2Z1I|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
gi|160286378|pdb|2Z1I|B Chain B, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
Length = 155
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPGPGG+G +LRY+G+EK S G + TTNNRMELMAAI AL ALK
Sbjct: 2 LKRVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYERTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L TDS YV KG ++WI W++ GWK +DKK VKN+DLW + A +HK+ W+
Sbjct: 62 HCEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGRHKIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERCDELARAAAMN 143
>gi|292487329|ref|YP_003530201.1| ribonuclease HI [Erwinia amylovora CFBP1430]
gi|292898575|ref|YP_003537944.1| ribonuclease HI [Erwinia amylovora ATCC 49946]
gi|291198423|emb|CBJ45531.1| ribonuclease HI [Erwinia amylovora ATCC 49946]
gi|291552748|emb|CBA19793.1| Ribonuclease HI [Erwinia amylovora CFBP1430]
Length = 155
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 99/140 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY EK S G TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYGKHEKTFSAGFHLTTNNRMEMMAAIVALEALTQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H + W+
Sbjct: 62 PCAVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHDIHWKWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHVENERCDELARTAA 141
>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
Length = 474
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + +E + GGE TTNNRMEL AAI+ +
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYIITETEEHKLCGGEDNTTNNRMELTAAIEGILFCPTD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K++++TDS+YV +G ++WI W+ + K VKN DLW K A +D +W+K
Sbjct: 63 AKLVVWTDSTYVKRGITEWITGWK-----KKNWKDVKNPDLWKKLDAACQGRDIDWHWVK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG++ NE D++A A + ++
Sbjct: 118 GHAGHEGNEMADQLANLGADQTQAQL 143
>gi|85058569|ref|YP_454271.1| ribonuclease H [Sodalis glossinidius str. 'morsitans']
gi|123752639|sp|Q2NVF9|RNH_SODGM RecName: Full=Ribonuclease H; Short=RNase H
gi|84779089|dbj|BAE73866.1| ribonuclease H [Sodalis glossinidius str. 'morsitans']
Length = 163
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 99/139 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK S G + TTNNRMELMAAI AL AL
Sbjct: 3 KQVAIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYRLTTNNRMELMAAIVALEALTDA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV +G +QWI W++ GWKT+ KK VKN+DLW + A H + W+K
Sbjct: 63 CEVVLSTDSQYVRQGITQWIHNWKKRGWKTAYKKPVKNVDLWQRLDAAIQPHTLRWDWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+G+ ENE+ D +AR AA
Sbjct: 123 GHSGHPENERCDELARTAA 141
>gi|186475633|ref|YP_001857103.1| ribonuclease H [Burkholderia phymatum STM815]
gi|184192092|gb|ACC70057.1| Ribonuclease H [Burkholderia phymatum STM815]
Length = 148
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDGAC GNPGPGGWG LLRY +EK + GGE TTNNRMELMA I AL ALK PCK
Sbjct: 6 IEIFTDGACKGNPGPGGWGALLRYGTQEKELFGGEANTTNNRMELMAVIAALEALKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+++TDS YV KG S+WI W++ GW T+ + VKN DLW + + QH+++ W+KGH
Sbjct: 66 AVVHTDSQYVQKGISEWIHGWKKKGWVTAARAPVKNADLWKRLDALTQQHQLEWRWVKGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A S
Sbjct: 126 AGHPENERADALANRGVASL 145
>gi|260775261|ref|ZP_05884158.1| ribonuclease HI [Vibrio coralliilyticus ATCC BAA-450]
gi|260608442|gb|EEX34607.1| ribonuclease HI [Vibrio coralliilyticus ATCC BAA-450]
Length = 154
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME+MA I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKQVEKTLAKGYTLTTNNRMEMMATIVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKTSDKK VKN DLW + +HK+D W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRDWKTSDKKPVKNADLWKALDAETGRHKIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARAAAEN 143
>gi|170726954|ref|YP_001760980.1| ribonuclease H [Shewanella woodyi ATCC 51908]
gi|238688668|sp|B1KHK0|RNH_SHEWM RecName: Full=Ribonuclease H; Short=RNase H
gi|169812301|gb|ACA86885.1| Ribonuclease H [Shewanella woodyi ATCC 51908]
Length = 161
Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPGPGG+GV+++YK K +S G TTNNRMEL+A I AL ALK
Sbjct: 4 LKQLSIFTDGSCLGNPGPGGYGVVMKYKAHTKELSDGFALTTNNRMELLAPIIALEALKV 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS Y+ +G +QWI W++ W TS K+ VKN+DLW + A+ H++D +W+
Sbjct: 64 PCKIILTSDSQYMRQGITQWIHGWKKKNWITSTKQPVKNVDLWKRLDAATQSHEIDWHWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 124 KGHAGHVENERCDTLARVAAEA 145
>gi|269960616|ref|ZP_06174988.1| Ribonuclease HI [Vibrio harveyi 1DA3]
gi|269834693|gb|EEZ88780.1| Ribonuclease HI [Vibrio harveyi 1DA3]
Length = 154
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+VD +W+K
Sbjct: 63 CQVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVDWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEICDELARTAAEN 143
>gi|261340924|ref|ZP_05968782.1| ribonuclease HI [Enterobacter cancerogenus ATCC 35316]
gi|288316781|gb|EFC55719.1| ribonuclease HI [Enterobacter cancerogenus ATCC 35316]
Length = 155
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G ++RY+ EK S G TTNNRMELMAAI AL ALK
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGAIMRYREHEKTFSEGYFLTTNNRMELMAAIVALEALKEH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH + W+K
Sbjct: 63 CDVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHVIKWEWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +AR AA +
Sbjct: 123 GHAGHPENERCDELARAAATN 143
>gi|302059180|ref|ZP_07250721.1| ribonuclease H [Pseudomonas syringae pv. tomato K40]
Length = 150
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/143 (49%), Positives = 91/143 (63%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWK + K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWLVNWKKRGWKPAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|156975480|ref|YP_001446387.1| ribonuclease H [Vibrio harveyi ATCC BAA-1116]
gi|189043721|sp|A7MY21|RNH_VIBHB RecName: Full=Ribonuclease H; Short=RNase H
gi|156527074|gb|ABU72160.1| hypothetical protein VIBHAR_03211 [Vibrio harveyi ATCC BAA-1116]
Length = 154
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 105/141 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+HKVD +W+K
Sbjct: 63 CQVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHKVDWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEICDELARTAAEN 143
>gi|295677149|ref|YP_003605673.1| ribonuclease H [Burkholderia sp. CCGE1002]
gi|295436992|gb|ADG16162.1| ribonuclease H [Burkholderia sp. CCGE1002]
Length = 148
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 98/144 (68%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK
Sbjct: 2 TPDHIDIYTDGACKGNPGPGGWGALLRFGSQEKELFGGEANTTNNRMELMGVISALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV+++TDS YV KG S+WI W++ GW T+ K+ VKN DLW + AQH+V+ W
Sbjct: 62 RPCKVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKQPVKNADLWKRLDALVAQHQVEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
++GH G+ ENE+ D++A S
Sbjct: 122 VRGHNGHPENERADQLANRGVASL 145
>gi|312171435|emb|CBX79693.1| Ribonuclease HI [Erwinia amylovora ATCC BAA-2158]
Length = 155
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 99/140 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY EK S G TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYGKHEKTFSAGFHLTTNNRMEMMAAIVALEALTQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H + W+
Sbjct: 62 PCAVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHDIHWKWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHVENERCDELARTAA 141
>gi|261253703|ref|ZP_05946276.1| ribonuclease HI [Vibrio orientalis CIP 102891]
gi|260937094|gb|EEX93083.1| ribonuclease HI [Vibrio orientalis CIP 102891]
Length = 154
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV+LRYK EK ++ G TTNNRME++A I AL ALK
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVLRYKQTEKTLAKGYTMTTNNRMEMLATIVALQALKES 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + + +H VD W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWKALDQETERHTVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARGAAEN 143
>gi|254508654|ref|ZP_05120769.1| ribonuclease HI [Vibrio parahaemolyticus 16]
gi|219548411|gb|EED25421.1| ribonuclease HI [Vibrio parahaemolyticus 16]
Length = 154
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++A I AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRMEMLATIVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW S +H +D W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWKALDAESERHNIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARTAAEN 143
>gi|309750445|gb|ADO80429.1| Ribonuclease HI [Haemophilus influenzae R2866]
Length = 154
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/139 (50%), Positives = 97/139 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG++ENE D +A+ A
Sbjct: 123 GHAGHRENEICDELAKKGA 141
>gi|298369300|ref|ZP_06980618.1| ribonuclease HI [Neisseria sp. oral taxon 014 str. F0314]
gi|298283303|gb|EFI24790.1| ribonuclease HI [Neisseria sp. oral taxon 014 str. F0314]
Length = 145
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 93/142 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVLLRY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 3 KTVYLYTDGACKGNPGAGGWGVLLRYGTHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS YV G WI W++NGWKT+ K+ VKN DLW + QH V W+K
Sbjct: 63 CTVEICTDSQYVKNGMESWIHGWKKNGWKTAAKQPVKNDDLWKELDNLVRQHDVRWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 123 GHAGHPENEKADVLANQGAAQF 144
>gi|152978552|ref|YP_001344181.1| ribonuclease H [Actinobacillus succinogenes 130Z]
gi|189043680|sp|A6VMP9|RNH_ACTSZ RecName: Full=Ribonuclease H; Short=RNase H
gi|150840275|gb|ABR74246.1| ribonuclease H [Actinobacillus succinogenes 130Z]
Length = 154
Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/141 (48%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG GV+LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGVGGIGVVLRYKQHEKTLSKGYFQTTNNRMELRAVIEALNLLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+++L++DS Y+ G +QWI W++N W+ S K VKN DLW+ A H + W+K
Sbjct: 63 CEIILHSDSQYMKNGITQWIFNWKKNNWRASTGKPVKNQDLWIALDSAIQPHTIHWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ENE D +A+ A +
Sbjct: 123 GHSGHRENEMCDELAKQGAEN 143
>gi|254361532|ref|ZP_04977670.1| ribonuclease H [Mannheimia haemolytica PHL213]
gi|153093050|gb|EDN74066.1| ribonuclease H [Mannheimia haemolytica PHL213]
Length = 154
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G+LLRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 2 MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNNRMELRAVIEALAMLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV L +DS Y+ G +WI W++N WKTSDKK VKN DLW+ + +H+++ W+
Sbjct: 62 PCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDLWVALDQEIQRHQIEWSWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 122 KGHSGHRENEICDELAKQGANN 143
>gi|238020809|ref|ZP_04601235.1| hypothetical protein GCWU000324_00699 [Kingella oralis ATCC 51147]
gi|237867789|gb|EEP68795.1| hypothetical protein GCWU000324_00699 [Kingella oralis ATCC 51147]
Length = 148
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGAC GNPG GGWGVL+RY EK + GGE TTNNRMEL A I+ L ALK P
Sbjct: 5 KTVTLYTDGACKGNPGKGGWGVLMRYGSHEKELFGGEAHTTNNRMELTAIIQGLAALKRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++YTDS YV G +WI W++NGWKT+ K+ VKN DLW + +AQH++ W++
Sbjct: 65 CAVVIYTDSQYVKNGMEKWIHGWKKNGWKTASKQPVKNEDLWQQLDRLAAQHQIQWQWVR 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D +A S
Sbjct: 125 GHAGHAENERADALANQGVAS 145
>gi|99082413|ref|YP_614567.1| ribonuclease H [Ruegeria sp. TM1040]
gi|123077455|sp|Q1GDG1|RNH_SILST RecName: Full=Ribonuclease H; Short=RNase H
gi|99038693|gb|ABF65305.1| ribonuclease H [Ruegeria sp. TM1040]
Length = 157
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG LLR KE+ + GGEKETTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGALLRAMDGETVLKERELKGGEKETTNNRMELLAAIHAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P K+ + TDS+YV G + WI W++NGWKTS KK VKN++LW + A ++H V
Sbjct: 61 ESLARPSKITVVTDSAYVKNGVTGWIFGWKKNGWKTSAKKPVKNVELWQRLDAAQSRHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK+
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKS 150
>gi|26990835|ref|NP_746260.1| ribonuclease H [Pseudomonas putida KT2440]
gi|148546961|ref|YP_001267063.1| ribonuclease H [Pseudomonas putida F1]
gi|167034709|ref|YP_001669940.1| ribonuclease H [Pseudomonas putida GB-1]
gi|37999405|sp|Q88FF5|RNH_PSEPK RecName: Full=Ribonuclease HI; Short=RNase HI
gi|189043704|sp|A5W169|RNH_PSEP1 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043705|sp|B0KN00|RNH_PSEPG RecName: Full=Ribonuclease H; Short=RNase H
gi|24985843|gb|AAN69724.1|AE016608_10 ribonuclease HI [Pseudomonas putida KT2440]
gi|148511019|gb|ABQ77879.1| RNase HI [Pseudomonas putida F1]
gi|166861197|gb|ABY99604.1| Ribonuclease H [Pseudomonas putida GB-1]
gi|313498008|gb|ADR59374.1| RnhA [Pseudomonas putida BIRD-1]
Length = 148
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 101/145 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWGVL+ YKG EK + GGE+ETTNNRMELMAAI+ L +LK
Sbjct: 3 DSVEMFTDGACKGNPGPGGWGVLMIYKGVEKELWGGERETTNNRMELMAAIQGLMSLKRE 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW + E +HKV W++
Sbjct: 63 CEVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVNRHKVTWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH G+ NE+ D++A + +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVRAQ 147
>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
Length = 458
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ Y DGAC GNPG GGWG + +E I GGE TTNNRMEL AAI+ +
Sbjct: 4 TITLYVDGACRGNPGLGGWGAYIVNGQQEHKICGGEDHTTNNRMELTAAIEGILFCDKQD 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K+++YTDS YV +G ++WI W+ + K VKN DLW K E ++ +W+KG
Sbjct: 64 KLVIYTDSKYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDEVCQGRDIEWHWVKG 118
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG+ NE D++A A K
Sbjct: 119 HAGHPGNEMADQLANLGADETLKK 142
>gi|119897063|ref|YP_932276.1| RnhA1 protein [Azoarcus sp. BH72]
gi|119669476|emb|CAL93389.1| RnhA1 protein [Azoarcus sp. BH72]
Length = 149
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 95/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWGV+L + K + GGE ETTNNRMEL AAIKAL ALK P
Sbjct: 6 VTIYTDGACRGNPGPGGWGVILSRGRQYKELYGGEPETTNNRMELTAAIKALEALKRPLP 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+LYTDS Y+ +G +QW+ KW+ GW+ +D K V+N DLW EA++ H V +W++GH
Sbjct: 66 VILYTDSKYLVQGMTQWLPKWKAKGWRKADGKPVENADLWKVLDEAASVHDVQWHWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
GN NE+ D +A +
Sbjct: 126 NGNPGNERADTLANLGIDTI 145
>gi|260432742|ref|ZP_05786713.1| ribonuclease HI [Silicibacter lacuscaerulensis ITI-1157]
gi|260416570|gb|EEX09829.1| ribonuclease HI [Silicibacter lacuscaerulensis ITI-1157]
Length = 155
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVLLR KE+ ++GGE ETTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGVLLRAVDGETVLKERELNGGEAETTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL+ P K+ + TDS+YV G + WI W++NGWKT+ +K VKN+DLW + EA +H V
Sbjct: 61 EALERPSKITIVTDSAYVKNGVTGWIHGWKRNGWKTASRKPVKNVDLWQRLDEAQQRHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR FK K
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKPK 151
>gi|295687772|ref|YP_003591465.1| ribonuclease H [Caulobacter segnis ATCC 21756]
gi|295429675|gb|ADG08847.1| ribonuclease H [Caulobacter segnis ATCC 21756]
Length = 149
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 81/137 (59%), Positives = 96/137 (70%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWG +L Y K+K I GGE TTNNRMELMAAI+AL L PC
Sbjct: 4 KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
KV L+TDS YV KG +WI+ W+ GWKT+DK VKN DLW + A A+H VD W+KG
Sbjct: 64 KVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123
Query: 128 HAGNQENEKVDRIARNA 144
HAG+ NE+ D +A
Sbjct: 124 HAGHPLNERADALANEG 140
>gi|86146864|ref|ZP_01065183.1| ribonuclease H [Vibrio sp. MED222]
gi|85835316|gb|EAQ53455.1| ribonuclease H [Vibrio sp. MED222]
Length = 154
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 106/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKKVEKTLAEGFTLTTNNRMEMLAAVVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKT+DKK VKN DLW + + +A+H VD W+K
Sbjct: 63 CSVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQRLDKETARHSVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR+AA +
Sbjct: 123 GHAGHRENEMCDDLARSAAEN 143
>gi|225075061|ref|ZP_03718260.1| hypothetical protein NEIFLAOT_00060 [Neisseria flavescens
NRL30031/H210]
gi|224953545|gb|EEG34754.1| hypothetical protein NEIFLAOT_00060 [Neisseria flavescens
NRL30031/H210]
Length = 147
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 94/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGV +RY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 5 KPVYLYTDGACKGNPGAGGWGVFMRYGTHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G WI W++NGWKT+ KK VKN DLW + QH V W+K
Sbjct: 65 CQVVICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKNDDLWKELDSLVQQHDVRWTWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 125 GHAGHPENEKADELANQGAAKF 146
>gi|254510607|ref|ZP_05122674.1| ribonuclease HI [Rhodobacteraceae bacterium KLH11]
gi|221534318|gb|EEE37306.1| ribonuclease HI [Rhodobacteraceae bacterium KLH11]
Length = 155
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVLLR KE+ + GGE ETTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGVLLRAMDGETVLKERELKGGEAETTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L+ + + TDS+YV G + WI W++NGWKTS+KK VKN+DLW + EA A+H+V
Sbjct: 61 ETLERASDITIVTDSAYVKNGVTGWIFGWKRNGWKTSNKKPVKNVDLWQRLDEAQARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFK 149
>gi|261492155|ref|ZP_05988726.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495749|ref|ZP_05992191.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308604|gb|EEY09865.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312228|gb|EEY13360.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 164
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G+LLRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 12 MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNNRMELRAVIEALAMLKE 71
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV L +DS Y+ G +WI W++N WKTSDKK VKN DLW+ + +H+++ W+
Sbjct: 72 PCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDLWVALDQEIQRHQIEWSWV 131
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ENE D +A+ A +
Sbjct: 132 KGHSGHRENEICDELAKQGANN 153
>gi|319637706|ref|ZP_07992472.1| ribonuclease H [Neisseria mucosa C102]
gi|317400861|gb|EFV81516.1| ribonuclease H [Neisseria mucosa C102]
Length = 147
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 94/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGV +RY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 5 KPVYLYTDGACKGNPGAGGWGVFMRYGTHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G WI W++NGWKT+ KK VKN DLW + QH V W+K
Sbjct: 65 CQVVICTDSQYVKNGMESWIYGWKKNGWKTAAKKPVKNDDLWKELDSLVQQHDVRWTWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 125 GHAGHPENEKADELANQGAAKF 146
>gi|91793374|ref|YP_563025.1| ribonuclease H [Shewanella denitrificans OS217]
gi|123356760|sp|Q12MM4|RNH_SHEDO RecName: Full=Ribonuclease H; Short=RNase H
gi|91715376|gb|ABE55302.1| ribonuclease H [Shewanella denitrificans OS217]
Length = 159
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 105/146 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V+ YTDG+C GNPGPGG+G++++YK K I+ G TTNNRMEL+A I AL AL P
Sbjct: 6 KQVNIYTDGSCLGNPGPGGYGIVMQYKQHSKEIADGFALTTNNRMELLAPIIALEALMEP 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L +DS Y+ +G +QWI W++ GW TS+K+ VKN+DLW + S +H +D W+K
Sbjct: 66 CIVTLTSDSQYMRQGITQWIHGWKKKGWMTSNKQAVKNVDLWKRLDSVSQRHNIDWRWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GH G+++NE+ D++AR+AA + +I
Sbjct: 126 GHTGHKQNERCDKLARDAAEAKPKQI 151
>gi|261379101|ref|ZP_05983674.1| ribonuclease HI [Neisseria cinerea ATCC 14685]
gi|269144416|gb|EEZ70834.1| ribonuclease HI [Neisseria cinerea ATCC 14685]
Length = 145
Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDG+C GNPGPGGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 KTVYLYTDGSCKGNPGPGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GH G+ ENE+ D +A A F
Sbjct: 123 GHVGHAENERADDLANRGAAQF 144
>gi|94502172|ref|ZP_01308670.1| RNase H [Oceanobacter sp. RED65]
gi|94425697|gb|EAT10707.1| RNase H [Oceanobacter sp. RED65]
Length = 147
Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats.
Identities = 76/139 (54%), Positives = 97/139 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPGPGGWGVLLRY EK + GGE ETTNNRMELMAAI+ L AL PCK
Sbjct: 5 VEMFTDGACKGNPGPGGWGVLLRYGAHEKELFGGELETTNNRMELMAAIRGLEALTKPCK 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS YV +G +QW+ W++ W TS ++ VKN +LW + A ++H V+ +W+KGH
Sbjct: 65 VRLTTDSQYVRQGITQWLSGWKKKNWMTSSRQPVKNKELWQRLDSAVSKHDVEWHWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVS 147
+G+ ENE+ D +A
Sbjct: 125 SGHIENERADDLANKGVEQ 143
>gi|52425626|ref|YP_088763.1| ribonuclease H [Mannheimia succiniciproducens MBEL55E]
gi|81825504|sp|Q65S82|RNH_MANSM RecName: Full=Ribonuclease H; Short=RNase H
gi|52307678|gb|AAU38178.1| RnhA protein [Mannheimia succiniciproducens MBEL55E]
Length = 158
Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats.
Identities = 71/141 (50%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG GV+LRYK EK +S G +TTNNRMEL A I+AL LK P
Sbjct: 7 KQIEIFTDGSCLGNPGAGGIGVVLRYKQHEKTLSQGYFKTTNNRMELRAVIEALNLLKEP 66
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L++DS Y+ G +QWI W++ WK S+ K VKN DLWM A H +D W+K
Sbjct: 67 CAVTLHSDSQYMKNGITQWIFNWKKKNWKASNGKPVKNQDLWMALDNAVQAHTIDWRWVK 126
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ENE D++A+ A +
Sbjct: 127 GHSGHRENELCDQLAKQGAEN 147
>gi|237748729|ref|ZP_04579209.1| ribonuclease H [Oxalobacter formigenes OXCC13]
gi|229380091|gb|EEO30182.1| ribonuclease H [Oxalobacter formigenes OXCC13]
Length = 144
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 107/142 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDGAC GNPGPGGWGV + G EK + GG+ +TTNNRMELMA I+AL ALK
Sbjct: 1 MNEVEIYTDGACRGNPGPGGWGVWMIAGGHEKELFGGDADTTNNRMELMAVIEALRALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L+TDS YV KG S+WI KW+ GW+T+DKK VKN+DLWM+ +A AQH +D WI
Sbjct: 61 PCKVVLHTDSQYVQKGISEWIHKWKARGWRTADKKLVKNVDLWMELDQARAQHDIDWRWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ NEK D++A S
Sbjct: 121 KGHAGHEGNEKADQLANKGVDS 142
>gi|149377451|ref|ZP_01895194.1| ribonuclease H [Marinobacter algicola DG893]
gi|149358292|gb|EDM46771.1| ribonuclease H [Marinobacter algicola DG893]
Length = 148
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 81/143 (56%), Positives = 100/143 (69%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGV+LRY K++ GGE TTNNRMELMAAI+ L AL+ C
Sbjct: 4 KVVLYTDGACKGNPGPGGWGVVLRYGDANKMLHGGEANTTNNRMELMAAIQGLKALRRTC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS YV KG ++W+ W++NGWKTS KK VKN DLW + A+HKV+ +W+KG
Sbjct: 64 DVELYTDSQYVRKGITEWMTGWKRNGWKTSAKKPVKNEDLWRELDNEVARHKVNWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H+GN +NE D +A N
Sbjct: 124 HSGNPDNELADELANRGVEELAN 146
>gi|86748467|ref|YP_484963.1| ribonuclease H [Rhodopseudomonas palustris HaA2]
gi|123408625|sp|Q2J0F8|RNH_RHOP2 RecName: Full=Ribonuclease H; Short=RNase H
gi|86571495|gb|ABD06052.1| RNase HI [Rhodopseudomonas palustris HaA2]
Length = 161
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 81/139 (58%), Positives = 100/139 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
R V +TDGACSGNPGPGGWG +L++ EK + GGE TTNNRMEL+AAI AL AL
Sbjct: 12 PRPVVIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEAHTTNNRMELLAAISALEALTR 71
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LYTDS YV G WI W++NGWKT+DKK VKN+DLW + A H+V +W+
Sbjct: 72 PCTVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHQVRWHWV 131
Query: 126 KGHAGNQENEKVDRIARNA 144
KGHAG+ ENE+ D++AR+
Sbjct: 132 KGHAGHDENERADQLARDG 150
>gi|309972739|gb|ADO95940.1| Ribonuclease HI [Haemophilus influenzae R2846]
Length = 154
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 70/139 (50%), Positives = 96/139 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNILKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G ++WI W++N WK S K VKN DLW+ E+ +HK++ W+K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG +ENE D +A+ A
Sbjct: 123 GHAGRRENEICDELAKKGA 141
>gi|299134143|ref|ZP_07027336.1| Ribonuclease H [Afipia sp. 1NLS2]
gi|298590890|gb|EFI51092.1| Ribonuclease H [Afipia sp. 1NLS2]
Length = 151
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 102/151 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMELMAAI AL
Sbjct: 1 MSEPPRPHVVIFTDGACSGNPGPGGWGAILRFGEIEKEMKGGENPTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK P V L TDS YV +G + WI W++NGW+T+DKK VKN +LW + A H+V
Sbjct: 61 EALKKPASVDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNAELWQRLDAALKPHEV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+WIKGHAG+ ENE+ D++AR+ + K
Sbjct: 121 RWHWIKGHAGHAENERADQLARDGLAEHRLK 151
>gi|298293043|ref|YP_003694982.1| ribonuclease H [Starkeya novella DSM 506]
gi|296929554|gb|ADH90363.1| ribonuclease H [Starkeya novella DSM 506]
Length = 171
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 3 SKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + +TDGACSGNPGPGGWG +LRY G EK +SGGE TTNNRMELMAAI AL
Sbjct: 16 KQPPKGIVAVWTDGACSGNPGPGGWGAILRYAGAEKELSGGESPTTNNRMELMAAISALE 75
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
ALK PC V L+TDS Y+ G ++WI W++NGW+T+DKK VKN+DLW + A +H++
Sbjct: 76 ALKRPCTVDLHTDSEYLRNGITKWIAGWKRNGWRTADKKPVKNVDLWERLESAMERHEIR 135
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+W+KGHAG++ NE+ D +AR FK
Sbjct: 136 WHWVKGHAGDEMNERADELARAGMAPFKR 164
>gi|29653667|ref|NP_819359.1| ribonuclease H [Coxiella burnetii RSA 493]
gi|161829961|ref|YP_001596267.1| ribonuclease H [Coxiella burnetii RSA 331]
gi|81839104|sp|Q83EK3|RNH_COXBU RecName: Full=Ribonuclease H; Short=RNase H
gi|187611366|sp|A9NB52|RNH_COXBR RecName: Full=Ribonuclease H; Short=RNase H
gi|29540929|gb|AAO89873.1| ribonuclease HI [Coxiella burnetii RSA 493]
gi|161761828|gb|ABX77470.1| RNase H [Coxiella burnetii RSA 331]
Length = 154
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 96/151 (63%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V+ Y DGAC GNPGPGGWGVLLRY E+ + GG TTNN+MEL AAI+ L
Sbjct: 1 MAKQEQNIVYLYCDGACRGNPGPGGWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+LK PC+V++ TDS Y+ +G ++W+ W++ GW+TS+KK VKN LW +H +
Sbjct: 61 KSLKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLEREVERHTI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGH+G+ ENE D +A +
Sbjct: 121 VWHWVKGHSGHAENEIADELANRGIDEVLKR 151
>gi|316935790|ref|YP_004110772.1| Ribonuclease H [Rhodopseudomonas palustris DX-1]
gi|315603504|gb|ADU46039.1| Ribonuclease H [Rhodopseudomonas palustris DX-1]
Length = 151
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 102/151 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V +TDGACSGNPGPGGWG +L++ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MSEADQKPVIIHTDGACSGNPGPGGWGAILKFGDVEKELKGGEPHTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LYTDS YV G WI W++NGWKT+DKK VKN+DLW + A H +
Sbjct: 61 EALTRPCSVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKTHSI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGHAG+ ENE+ D++AR+ + K
Sbjct: 121 RWHWVKGHAGHAENERADQLARDGLTENRLK 151
>gi|251792048|ref|YP_003006768.1| ribonuclease H [Aggregatibacter aphrophilus NJ8700]
gi|247533435|gb|ACS96681.1| ribonuclease HI [Aggregatibacter aphrophilus NJ8700]
Length = 154
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG GVLLRYK EK +S G TTNNRMEL+A I+AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGVLLRYKQHEKSLSKGYFLTTNNRMELLAVIEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G +QWI W++N WK S K VKN DLW+ +A A+HKVD W+K
Sbjct: 63 CDIHLYSDSQYMKNGITQWIFNWKKNNWKASSGKPVKNQDLWIALDQAIARHKVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH G++ENE D++A+ A +
Sbjct: 123 GHTGHRENEICDQLAKQGAEN 143
>gi|56460795|ref|YP_156076.1| ribonuclease HI [Idiomarina loihiensis L2TR]
gi|81821750|sp|Q5QZL3|RNH_IDILO RecName: Full=Ribonuclease H; Short=RNase H
gi|56179805|gb|AAV82527.1| Ribonuclease HI [Idiomarina loihiensis L2TR]
Length = 157
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 100/143 (69%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ + VH YTDG+C GNPGPGG+G +L Y K +S G + TTNNRME++A I L L
Sbjct: 2 SNSKTVHLYTDGSCLGNPGPGGYGAVLEYGKHHKELSQGYRLTTNNRMEMLATIAGLREL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C V+L TDS YV +G QW+ +W+QNGW+TS +K VKN DLW + E +HKV+
Sbjct: 62 KRSCHVILTTDSQYVKQGVEQWMHRWKQNGWRTSARKAVKNKDLWQQLDEEVNRHKVEWK 121
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
WIKGH+G+++NE+ D +AR+AA
Sbjct: 122 WIKGHSGHKQNERCDELARDAAT 144
>gi|121604585|ref|YP_981914.1| ribonuclease H [Polaromonas naphthalenivorans CJ2]
gi|187611391|sp|A1VMW5|RNH_POLNA RecName: Full=Ribonuclease H; Short=RNase H
gi|120593554|gb|ABM36993.1| RNase HI [Polaromonas naphthalenivorans CJ2]
Length = 161
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ V YTDGAC GNPGPGGWG LL G EK I GGE TTNNRME+ A I+AL AL
Sbjct: 11 SQPQHVVIYTDGACKGNPGPGGWGALLASGGTEKEIFGGEMGTTNNRMEMTAVIEALAAL 70
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVD 121
K PC V LY DS YV KG ++WI W+ GW+T+ K VKN+DLW + S+ H +D
Sbjct: 71 KKPCTVTLYLDSQYVLKGITEWIHGWKARGWRTAAKAPVKNVDLWQRLDALLVSSGHSID 130
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W++GH G+ NE+ D +A ++
Sbjct: 131 WRWVRGHNGDPGNERADALANKGVERALGRL 161
>gi|56479130|ref|YP_160719.1| ribonuclease HI [Aromatoleum aromaticum EbN1]
gi|81821004|sp|Q5NYP6|RNH_AZOSE RecName: Full=Ribonuclease H; Short=RNase H
gi|56315173|emb|CAI09818.1| Ribonuclease HI (EC 3.1.26.4) [Aromatoleum aromaticum EbN1]
Length = 153
Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 98/145 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ +TDGACSGNPGPGGWG +LR EK I GGE TTNNRMEL+A I+AL LK P
Sbjct: 3 DQIEIFTDGACSGNPGPGGWGAILRSGAHEKEIWGGEPHTTNNRMELLAVIRALELLKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++TDS YV KG S+WI W+ GWKT+ K VKN DLW EA+++H+V W++
Sbjct: 63 VVARVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNEDLWRALDEAASRHQVQWVWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ ENE+ D +AR + + +
Sbjct: 123 GHAGHVENERADELARRGVDAVRRQ 147
>gi|154707372|ref|YP_001425095.1| ribonuclease H [Coxiella burnetii Dugway 5J108-111]
gi|212213174|ref|YP_002304110.1| ribonuclease H [Coxiella burnetii CbuG_Q212]
gi|187611365|sp|A9KGQ0|RNH_COXBN RecName: Full=Ribonuclease H; Short=RNase H
gi|238056786|sp|B6J1Y7|RNH_COXB2 RecName: Full=Ribonuclease H; Short=RNase H
gi|154356658|gb|ABS78120.1| ribonuclease HI [Coxiella burnetii Dugway 5J108-111]
gi|212011584|gb|ACJ18965.1| ribonuclease HI [Coxiella burnetii CbuG_Q212]
Length = 154
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 96/151 (63%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V+ Y DGAC GNPGPGGWGVLLRY E+ + GG TTNN+MEL AAI+ L
Sbjct: 1 MAKQEQNIVYLYCDGACRGNPGPGGWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+LK PC+V++ TDS Y+ +G ++W+ W++ GW+TS+KK VKN LW +H +
Sbjct: 61 KSLKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLEREVERHTI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGH+G+ ENE D +A +
Sbjct: 121 VWHWVKGHSGHAENEIADELANRGIDEVLKR 151
>gi|254283125|ref|ZP_04958093.1| ribonuclease HI [gamma proteobacterium NOR51-B]
gi|219679328|gb|EED35677.1| ribonuclease HI [gamma proteobacterium NOR51-B]
Length = 146
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 74/142 (52%), Positives = 98/142 (69%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V A+TDGAC GNPGPGGWGVLLR +E+ + GGE +TTNNRMEL AAI+AL +LK
Sbjct: 4 SVEAFTDGACRGNPGPGGWGVLLRRGDRERELWGGEAQTTNNRMELTAAIEALRSLKDGS 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L TDS YV G ++W+ W++NGW+T+ +K VKN DLW E A+H+V +W+KG
Sbjct: 64 TVDLTTDSVYVRDGITRWVAGWKRNGWRTAARKPVKNQDLWQSLDEQCARHEVRWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H+G+ EN++ D +A K
Sbjct: 124 HSGHAENDRADALANRGIDELK 145
>gi|229590112|ref|YP_002872231.1| ribonuclease H [Pseudomonas fluorescens SBW25]
gi|312960548|ref|ZP_07775054.1| Ribonuclease H [Pseudomonas fluorescens WH6]
gi|229361978|emb|CAY48878.1| ribonuclease HI [Pseudomonas fluorescens SBW25]
gi|311285074|gb|EFQ63649.1| Ribonuclease H [Pseudomonas fluorescens WH6]
Length = 150
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 72/143 (50%), Positives = 91/143 (63%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMELM AI+ L LK
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELMGAIRGLEELKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C VLL TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E +H + W++
Sbjct: 63 CNVLLVTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQCNRHDITWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHPGNERADQLANRGVDEVR 145
>gi|54310043|ref|YP_131063.1| putative ribonuclease HI [Photobacterium profundum SS9]
gi|46914482|emb|CAG21261.1| putative ribonuclease HI [Photobacterium profundum SS9]
Length = 179
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Query: 4 KHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
++ ++V +TDG+C GNPGPGG+G +LRYK EK +S G TTNNRMEL+AAI L+
Sbjct: 22 SNMTKQVEVFTDGSCLGNPGPGGYGTVLRYKQHEKELSEGFFMTTNNRMELLAAIVGLSN 81
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VD 121
LK C V L TDS YV +G +QWI W++ GW+T+DK+ VKN DLW + + +H V+
Sbjct: 82 LKEACHVELTTDSQYVRQGITQWIHNWKKRGWQTADKRPVKNADLWQRLDAETQRHIVVN 141
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+W+KGHAG+ ENE+ D +ARNAA
Sbjct: 142 WHWVKGHAGHIENERCDVLARNAAEK 167
>gi|224824457|ref|ZP_03697564.1| Ribonuclease H [Lutiella nitroferrum 2002]
gi|224602950|gb|EEG09126.1| Ribonuclease H [Lutiella nitroferrum 2002]
Length = 147
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 79/140 (56%), Positives = 100/140 (71%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGAC GNPGPGGWGVLLR+KG+EK + GGE+ TTNNRMEL A I+ L LK PCK
Sbjct: 6 VEIYPDGACKGNPGPGGWGVLLRFKGREKELFGGEQGTTNNRMELTAVIEGLAQLKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV KG S+WI W++ GWKT+ K+ VKN DLW K A H++ +W+KGH
Sbjct: 66 VAVYTDSQYVQKGISEWIHGWKKRGWKTAAKEPVKNADLWQKLDALQAGHQISWHWVKGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG++ NE+ D++A +
Sbjct: 126 AGHEFNERADQLANRGVETL 145
>gi|332535810|ref|ZP_08411543.1| ribonuclease HI [Pseudoalteromonas haloplanktis ANT/505]
gi|332034788|gb|EGI71326.1| ribonuclease HI [Pseudoalteromonas haloplanktis ANT/505]
Length = 154
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 98/141 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+G+ + Y G EK +S G K TTNNRME++AAI AL +L
Sbjct: 3 KTVEIYTDGSCLGNPGPGGYGIFMIYNGHEKEMSQGYKLTTNNRMEMLAAIVALESLTRE 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G WI W++ GW TS KK VKN+DLW + +A ++H V W+K
Sbjct: 63 CDVNLTTDSQYVKQGIESWITNWKKRGWLTSAKKPVKNVDLWKRLDKACSEHNVTWKWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+GN+ NE VD +AR+AA S
Sbjct: 123 GHSGNKYNEIVDDLARDAAGS 143
>gi|218710291|ref|YP_002417912.1| ribonuclease H [Vibrio splendidus LGP32]
gi|254808030|sp|B7VIP1|RNH_VIBSL RecName: Full=Ribonuclease H; Short=RNase H
gi|218323310|emb|CAV19487.1| Ribonuclease HI [Vibrio splendidus LGP32]
Length = 154
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 106/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRY+ EK ++ G TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYRKVEKTLAEGFTLTTNNRMEMLAAVVALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKT+DKK VKN DLW + + +A+H VD W+K
Sbjct: 63 CSVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQRLDKETARHSVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR+AA +
Sbjct: 123 GHAGHRENEMCDDLARSAAEN 143
>gi|153208788|ref|ZP_01947020.1| RNase H [Coxiella burnetii 'MSU Goat Q177']
gi|165920928|ref|ZP_02219598.1| RNase H [Coxiella burnetii RSA 334]
gi|212218151|ref|YP_002304938.1| ribonuclease H [Coxiella burnetii CbuK_Q154]
gi|238056785|sp|B6J5V1|RNH_COXB1 RecName: Full=Ribonuclease H; Short=RNase H
gi|120575750|gb|EAX32374.1| RNase H [Coxiella burnetii 'MSU Goat Q177']
gi|165916776|gb|EDR35380.1| RNase H [Coxiella burnetii RSA 334]
gi|212012413|gb|ACJ19793.1| ribonuclease HI [Coxiella burnetii CbuK_Q154]
Length = 154
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 96/151 (63%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V+ Y DGAC GNPGPGGWGVLLRY E+ + GG TTNN+MEL AAI+ L
Sbjct: 1 MAKQEQNIVYLYCDGACRGNPGPGGWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+LK PC+V++ TDS Y+ +G ++W+ W++ GW+TS+KK VKN LW +H +
Sbjct: 61 KSLKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLEREVERHTI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+W+KGH+G+ ENE D +A +
Sbjct: 121 VWHWVKGHSGHAENEIADELANRGIDEVLKR 151
>gi|317056374|ref|YP_004104841.1| Ribonuclease H [Ruminococcus albus 7]
gi|315448643|gb|ADU22207.1| Ribonuclease H [Ruminococcus albus 7]
Length = 157
Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDGACSGNPGPGG+G +LR++ K + GG+ +TTNNRME+ A IK L ALK
Sbjct: 1 MKKIEIFTDGACSGNPGPGGYGTILRFRDINKELYGGDPKTTNNRMEMTAVIKGLQALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS YV ++ W++ GW +DKK N DLW ++ HKV+ W
Sbjct: 61 PCEVTLYSDSKYVIDAITKGWAVGWKKRGWVKADKKPALNSDLWQIILDLLDVHKVEFVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGHAG+ ENE+ D +A + ++
Sbjct: 121 VKGHAGHTENERCDELAVKGSQEARS 146
>gi|77458413|ref|YP_347918.1| ribonuclease H [Pseudomonas fluorescens Pf0-1]
gi|123772231|sp|Q3KE77|RNH_PSEPF RecName: Full=Ribonuclease H; Short=RNase H
gi|77382416|gb|ABA73929.1| ribonuclease HI [Pseudomonas fluorescens Pf0-1]
gi|258450509|gb|ACV72184.1| ribonuclease H [uncultured organism]
Length = 153
Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 98/147 (66%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S+ + V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL+ AI+ L A
Sbjct: 2 SESVDSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELLGAIRGLEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK PC+VLL TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E +HKV
Sbjct: 62 LKRPCEVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKALDEQVNRHKVTW 121
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
W++GH G+ NE+ D++A +
Sbjct: 122 KWVRGHIGHHGNERADQLANRGVDEVR 148
>gi|315498581|ref|YP_004087385.1| ribonuclease h [Asticcacaulis excentricus CB 48]
gi|315416593|gb|ADU13234.1| Ribonuclease H [Asticcacaulis excentricus CB 48]
Length = 147
Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGAC GNPG GGWG +L + EK + G E ETTNNRMELMA I AL ALK
Sbjct: 1 MKKVTIYTDGACKGNPGKGGWGAILTFGPHEKELYGFEAETTNNRMELMAVIMALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ ++ DS YV KG +WI W+ GWKT+DKK VKN DLW++ A +HK+ +W+
Sbjct: 61 PCEIDVHADSQYVLKGIKEWIHGWKARGWKTADKKPVKNDDLWIRLDAARQRHKIHWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGHAG++ NE+ D +A A
Sbjct: 121 KGHAGHEMNERADGLANKAITEA 143
>gi|84389767|ref|ZP_00991319.1| ribonuclease H [Vibrio splendidus 12B01]
gi|84376868|gb|EAP93742.1| ribonuclease H [Vibrio splendidus 12B01]
Length = 154
Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 106/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL ALK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKKVEKTLAEGFTLTTNNRMEMLAAVIALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ WKT+DKK VKN DLW + + +A+H VD W+K
Sbjct: 63 CSVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQRLDKETARHSVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +ARNAA +
Sbjct: 123 GHAGHRENEMCDDLARNAAEN 143
>gi|254499193|ref|ZP_05111873.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254351583|gb|EET10438.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 144
Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 100/143 (69%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTDGAC GNPGPGGWGVLLRY+G+EK + GGE TTNNRMELMAAIK L ALK C
Sbjct: 2 SIEIYTDGACKGNPGPGGWGVLLRYQGQEKTLHGGEAHTTNNRMELMAAIKGLEALKRSC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS Y+ +G W+ W++NGW+ S K+ VKN DLW + ++QH++ +W+KG
Sbjct: 62 VVDLYTDSQYLRQGMMDWLAGWKKNGWRNSKKEPVKNADLWKMLDDLASQHQIKWHWVKG 121
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H+G+ ENE VD +A +
Sbjct: 122 HSGHTENELVDALANKGIEELRE 144
>gi|300312712|ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
gi|300075497|gb|ADJ64896.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
Length = 143
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V Y+DGAC GNPG GGWG LL GKEK I GGE TTNNRMELMA I+AL ALK
Sbjct: 1 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+++TDS YV KG S+WI W+ GWKT+ K+ VKN DLW A QH+V+ W+
Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH G+ NE+ D++A S
Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143
>gi|270156748|ref|ZP_06185405.1| ribonuclease HI [Legionella longbeachae D-4968]
gi|289164805|ref|YP_003454943.1| ribonuclease HI [Legionella longbeachae NSW150]
gi|269988773|gb|EEZ95027.1| ribonuclease HI [Legionella longbeachae D-4968]
gi|288857978|emb|CBJ11838.1| putative ribonuclease HI [Legionella longbeachae NSW150]
Length = 144
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 100/142 (70%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWGVLLR KG+EK + GGE TTNNRMELMAAIK L ALK C
Sbjct: 3 VEIYTDGACKGNPGPGGWGVLLRCKGQEKTLHGGEAHTTNNRMELMAAIKGLEALKRSCI 62
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS Y+ +G W+ W+ GW+ S K+ VKN DLWM E +++H+++ +W+KGH
Sbjct: 63 VDLYTDSQYLRQGMLDWLPNWKMKGWRNSKKEPVKNADLWMMLDELASRHQINWHWVKGH 122
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
+G+ ENE VD +A A +
Sbjct: 123 SGHLENELVDALANQAIEELRE 144
>gi|33594118|ref|NP_881762.1| ribonuclease H [Bordetella pertussis Tohama I]
gi|81836121|sp|Q7VRX8|RNH_BORPE RecName: Full=Ribonuclease H; Short=RNase H
gi|33564192|emb|CAE43477.1| ribonuclease HI [Bordetella pertussis Tohama I]
gi|332383534|gb|AEE68381.1| ribonuclease H [Bordetella pertussis CS]
Length = 155
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 103/145 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGAC GNPGPGGWGVL+R EK + GGE++TTNNRMELMA I+ L ALK P
Sbjct: 11 QQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRP 70
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V ++TDS YV KG ++W+ W++ GW+T+DKK VKN++LW E +H+V W++
Sbjct: 71 CRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVR 130
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ NE+ D +A + + +
Sbjct: 131 GHAGDPGNERADALANQGMEAARGR 155
>gi|163801803|ref|ZP_02195700.1| ribonuclease H [Vibrio sp. AND4]
gi|159174311|gb|EDP59115.1| ribonuclease H [Vibrio sp. AND4]
Length = 154
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ WKT+DKK VKN DLW + +A+H+VD +W+K
Sbjct: 63 CQVSLTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQALDKETARHQVDWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEICDDLARAAAEN 143
>gi|148264891|ref|YP_001231597.1| ribonuclease H [Geobacter uraniireducens Rf4]
gi|187611374|sp|A5G5F6|RNH_GEOUR RecName: Full=Ribonuclease H; Short=RNase H
gi|146398391|gb|ABQ27024.1| RNase HI [Geobacter uraniireducens Rf4]
Length = 147
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 97/144 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V + DGACSGNPG GGWG +LRY K +SG + +TTNNRME+ AAI+AL +LK PC
Sbjct: 2 KVEIFCDGACSGNPGVGGWGSILRYGDTVKELSGADGDTTNNRMEMTAAIEALASLKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V+L TDS Y+ KG ++W+ W + GW S K+ V N +LW + + S HK+ W++G
Sbjct: 62 EVVLTTDSQYLVKGMTEWMSGWIRKGWVNSKKEPVLNRELWERLLALSKIHKIRWAWVRG 121
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
H G+ ENE+ D +AR A FK +
Sbjct: 122 HNGHPENERCDELARAAIEVFKGR 145
>gi|255263666|ref|ZP_05343008.1| ribonuclease HI [Thalassiobium sp. R2A62]
gi|255106001|gb|EET48675.1| ribonuclease HI [Thalassiobium sp. R2A62]
Length = 152
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG L+ + K++ + GGE TTNNRMEL+ AI L
Sbjct: 1 MPDLIAYTDGACSGNPGPGGWGALMIARDGDTVLKKRELKGGEAHTTNNRMELLGAINVL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L P + + TDS+YV G ++WI W++ GWKTS KK VKN DLW + E + +H V
Sbjct: 61 ETLAKPSVITIVTDSAYVKGGITEWIFGWKRRGWKTSTKKPVKNEDLWKRLDEVTQRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMEPFK 149
>gi|258450503|gb|ACV72181.1| ribonuclease H [uncultured organism]
Length = 149
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/136 (55%), Positives = 97/136 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+GV+LRY+ +K +S G ++TTNNRMEL+AAI L +LK P
Sbjct: 3 KRVAIYTDGSCLGNPGPGGYGVVLRYQQHQKEMSAGYQQTTNNRMELLAAIVGLESLKQP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV G +QW+ W WKTS K+ VKN DLW + A HKV+ +W+K
Sbjct: 63 CEVDLTTDSQYVRLGITQWLANWNPPPWKTSQKEPVKNQDLWRRLDAACQGHKVNWHWVK 122
Query: 127 GHAGNQENEKVDRIAR 142
GHAG+ ENE+ D +AR
Sbjct: 123 GHAGHPENERCDELAR 138
>gi|330939729|gb|EGH43018.1| ribonuclease H [Pseudomonas syringae pv. pisi str. 1704B]
Length = 140
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/138 (52%), Positives = 91/138 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122
Query: 127 GHAGNQENEKVDRIARNA 144
GH G+ NE+ D++A
Sbjct: 123 GHIGHPGNERADQLANRG 140
>gi|39937329|ref|NP_949605.1| ribonuclease H [Rhodopseudomonas palustris CGA009]
gi|192293110|ref|YP_001993715.1| ribonuclease H [Rhodopseudomonas palustris TIE-1]
gi|81829462|sp|Q6N1Y3|RNH_RHOPA RecName: Full=Ribonuclease H; Short=RNase H
gi|229564316|sp|B3Q6U1|RNH_RHOPT RecName: Full=Ribonuclease H; Short=RNase H
gi|39651187|emb|CAE29710.1| ribonuclease H [Rhodopseudomonas palustris CGA009]
gi|192286859|gb|ACF03240.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1]
Length = 155
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 100/144 (69%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V +TDGACSGNPGPGGWG +L++ EK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MSEADQKPVIIHTDGACSGNPGPGGWGAILKFGDVEKELKGGEPHTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LYTDS YV G WI W++NGWKT+DKK VKN+DLW + A H +
Sbjct: 61 EALTRPCSVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKTHSI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+W+KGHAG+ ENE+ D++AR+
Sbjct: 121 RWHWVKGHAGHAENERADQLARDG 144
>gi|83951631|ref|ZP_00960363.1| ribonuclease HI [Roseovarius nubinhibens ISM]
gi|83836637|gb|EAP75934.1| ribonuclease HI [Roseovarius nubinhibens ISM]
Length = 154
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVL++ K K++ +SGGE TTNN+MELMAAI AL
Sbjct: 1 MVDLVAYTDGACSGNPGPGGWGVLMQAKRGAEVIKQRELSGGEALTTNNQMELMAAITAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L+ P + + TDS YV G + WI W++NGWKTS KK VKN++LW + A A+HKV
Sbjct: 61 ETLEKPSTITIVTDSQYVKNGVTGWIFGWKKNGWKTSAKKPVKNVELWQRLDAAQARHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR +K K
Sbjct: 121 TWEWVKGHAGHPENERADELAREGMAPYKPK 151
>gi|312199471|ref|YP_004019532.1| ribonuclease H [Frankia sp. EuI1c]
gi|311230807|gb|ADP83662.1| Ribonuclease H [Frankia sp. EuI1c]
Length = 192
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALKYPC 67
V YTDGAC GNPGPGGWG +LRY E+ I GGE +TTNNRMELMAAI AL AL P
Sbjct: 47 VEIYTDGACKGNPGPGGWGAVLRYGTHERAICGGEAGDTTNNRMELMAAIMALEALTRPS 106
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V ++TDS Y+ G ++W+ +W++NGWKT +KK VKN+DLW + A+ H V+ W++G
Sbjct: 107 VVRIHTDSQYLRSGINEWLARWKRNGWKTGEKKPVKNVDLWQRLDAATRVHDVEWLWVRG 166
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG+ NE D++A V + +
Sbjct: 167 HAGDPGNELADQLANRGLVGARRQ 190
>gi|167855392|ref|ZP_02478158.1| ribonuclease H [Haemophilus parasuis 29755]
gi|219871305|ref|YP_002475680.1| ribonuclease H [Haemophilus parasuis SH0165]
gi|167853458|gb|EDS24706.1| ribonuclease H [Haemophilus parasuis 29755]
gi|219691509|gb|ACL32732.1| ribonuclease H [Haemophilus parasuis SH0165]
Length = 153
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/142 (52%), Positives = 100/142 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G+LLRY+GKEK IS G TTNNRMEL+A I AL ALK
Sbjct: 1 MKLVDIFTDGSCLGNPGKGGIGILLRYQGKEKRISQGYYLTTNNRMELLAVITALNALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L++DS Y+ G +WI W++N WKTS+ VKN DLW+ +A +H+V+ W+
Sbjct: 61 PCNVHLHSDSQYMQNGIQKWIFNWKKNNWKTSNNTPVKNQDLWIALDKAITRHQVEWQWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE D++A+ A +
Sbjct: 121 KGHSGHTENEICDQLAKEGANN 142
>gi|113970495|ref|YP_734288.1| ribonuclease H [Shewanella sp. MR-4]
gi|122943794|sp|Q0HI86|RNH_SHESM RecName: Full=Ribonuclease H; Short=RNase H
gi|113885179|gb|ABI39231.1| ribonuclease H [Shewanella sp. MR-4]
Length = 158
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 106/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL ALK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIVALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L +DS Y+ +G + WI W++ GW TS++ VKN+DLW + +A+ H +D W+
Sbjct: 64 PCKVILTSDSQYMRQGITTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHHIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D++AR AA + +I
Sbjct: 124 KGHAGHAENERCDQLARAAAEASPTQI 150
>gi|189425834|ref|YP_001953011.1| ribonuclease H [Geobacter lovleyi SZ]
gi|189422093|gb|ACD96491.1| Ribonuclease H [Geobacter lovleyi SZ]
Length = 153
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 1 MDSKH-LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
M ++ L EV + DGACSGNPGPGG+G +LR +GKEK +SG ETTNNRMEL AA++
Sbjct: 1 MKQQNSLTEVEIFCDGACSGNPGPGGYGTILRCRGKEKELSGAATETTNNRMELTAALEG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L L C+V + TDS Y+ KG ++W+ WQ+NGWK S K+ V N DLW VEAS H+
Sbjct: 61 LRQLTRSCRVTITTDSQYLVKGMTEWLPGWQRNGWKNSKKEPVLNRDLWEALVEASKPHQ 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V W++GHAG+ ENE+ D +AR A + +
Sbjct: 121 VAWQWVRGHAGHAENERCDTLAREAISAMQ 150
>gi|328952836|ref|YP_004370170.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
gi|328453160|gb|AEB08989.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
Length = 168
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L++V YTDGAC GNPGPGG+G +L Y K +SGG + TTNNRMELMA I AL ALK
Sbjct: 9 TLKKVTIYTDGACIGNPGPGGYGAILIYGKHRKELSGGYRLTTNNRMELMAVIAALEALK 68
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PC+V +++DS YV ++ KKW+ GW+ + + KN DLW + + ++H+V +
Sbjct: 69 IPCQVEIFSDSQYVVNAMTKGWAKKWRAFGWRRNKEDKAKNPDLWDRLLRLCSRHQVSFF 128
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
WIKGH G+ ENE+ D++A AA +
Sbjct: 129 WIKGHDGHVENERCDQLAVRAASA 152
>gi|322419823|ref|YP_004199046.1| ribonuclease H [Geobacter sp. M18]
gi|320126210|gb|ADW13770.1| ribonuclease H [Geobacter sp. M18]
Length = 163
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/142 (50%), Positives = 96/142 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V + DGACSGNPG GGWG +LRY K K +SG E ETTNNRME+ AAI AL AL PC
Sbjct: 2 QVEIFCDGACSGNPGVGGWGSILRYGDKVKELSGAEGETTNNRMEMSAAIGALEALTRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V++ TDS Y+ KG ++W+ W + GW S K+ V N DLW + V + H++ W++G
Sbjct: 62 EVVVTTDSQYLAKGMTEWVAGWIRKGWVNSKKEPVVNRDLWERLVALARVHRIKWVWVRG 121
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H G+ ENE+ D +AR A S++
Sbjct: 122 HNGHVENERCDELARAAIDSYR 143
>gi|91784548|ref|YP_559754.1| ribonuclease H [Burkholderia xenovorans LB400]
gi|187924849|ref|YP_001896491.1| Ribonuclease H [Burkholderia phytofirmans PsJN]
gi|296158206|ref|ZP_06841038.1| ribonuclease H [Burkholderia sp. Ch1-1]
gi|91688502|gb|ABE31702.1| RNase HI [Burkholderia xenovorans LB400]
gi|187716043|gb|ACD17267.1| Ribonuclease H [Burkholderia phytofirmans PsJN]
gi|295891542|gb|EFG71328.1| ribonuclease H [Burkholderia sp. Ch1-1]
Length = 148
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK PCK
Sbjct: 6 IDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEANTTNNRMELMGVIAALEALKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+++TDS YV KG S+WI W++ GW T+ K+ VKN DLW + AQH+++ W++GH
Sbjct: 66 AVVHTDSQYVQKGISEWIHGWKKKGWITAAKQPVKNADLWKRLDALVAQHEIEWRWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
G+ ENE+ D++A S
Sbjct: 126 NGHPENERADQLANRGVASL 145
>gi|117925405|ref|YP_866022.1| RNase HI [Magnetococcus sp. MC-1]
gi|117609161|gb|ABK44616.1| RNase HI [Magnetococcus sp. MC-1]
Length = 238
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 89/142 (62%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
E+ YTDGACSGNPGPGGWGV RY + G +TTNNRME++AAI AL L
Sbjct: 87 EIILYTDGACSGNPGPGGWGVHGRYGEQMADQMGWAPQTTNNRMEMLAAIHALEPLPEGS 146
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V + TDS+YV G ++WI W+ GWK SD TV N+DLW + A V WIKG
Sbjct: 147 RVKIITDSAYVKDGITKWIHGWKVRGWKKSDGNTVLNVDLWKRLDAARQNRDVTWQWIKG 206
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
HAG+ NE+ DR+ARNA +
Sbjct: 207 HAGHAGNEQADRLARNAITQGQ 228
>gi|317402508|gb|EFV83075.1| RnhA protein [Achromobacter xylosoxidans C54]
Length = 153
Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 98/144 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGAC GNPGPGGWGVL+R EK + GGE +TTNNRMEL+A I+ L ALK P
Sbjct: 9 QKVEMWTDGACKGNPGPGGWGVLMRAGVHEKTMHGGEAQTTNNRMELLAVIEGLRALKRP 68
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V ++TDS YV KG ++W+ W++ GW T+DKK VKN +LW E +H V W++
Sbjct: 69 CAVTIHTDSQYVMKGMTEWLSNWKRRGWMTADKKPVKNAELWQSLDEQVRRHTVSWRWVR 128
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ NE+ D++A S +
Sbjct: 129 GHAGDPGNERADQLANQGVESVRR 152
>gi|310766704|gb|ADP11654.1| ribonuclease H (RNase H) [Erwinia sp. Ejp617]
Length = 153
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 101/141 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY EKI S G TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYGKHEKIFSAGFHLTTNNRMEMMAAIVALEALTQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H ++ W+
Sbjct: 62 PCAVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHDINWKWV 121
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHVENERCDVLARTAAE 142
>gi|114047730|ref|YP_738280.1| ribonuclease H [Shewanella sp. MR-7]
gi|123131350|sp|Q0HUI2|RNH_SHESR RecName: Full=Ribonuclease H; Short=RNase H
gi|113889172|gb|ABI43223.1| ribonuclease H [Shewanella sp. MR-7]
Length = 158
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 106/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL ALK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIVALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L +DS Y+ +G + WI W++ GW TS++ VKN+DLW + +A+ H +D W+
Sbjct: 64 PCKVILTSDSQYMRQGITTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHHIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D++AR AA + +I
Sbjct: 124 KGHAGHAENERCDQLARAAAEASPTQI 150
>gi|160871674|ref|ZP_02061806.1| ribonuclease HI [Rickettsiella grylli]
gi|159120473|gb|EDP45811.1| ribonuclease HI [Rickettsiella grylli]
Length = 150
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 102/141 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ +TDGAC GNPGPG W LLR++GKEK +SG E TTNNRMELMAAI+AL A+K PC
Sbjct: 6 KIEIFTDGACRGNPGPGAWAALLRFQGKEKTLSGTEASTTNNRMELMAAIQALIAVKKPC 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+++L TDS YV KG ++W+ +W++ W T++KK VKN DLW + + +H++ W+KG
Sbjct: 66 RIILSTDSKYVQKGITEWLPQWKRRAWLTANKKPVKNSDLWKELALQAERHQISWEWVKG 125
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ EN++VD +A A
Sbjct: 126 HSGHPENDRVDYLANVALDKL 146
>gi|311103920|ref|YP_003976773.1| RNAse H [Achromobacter xylosoxidans A8]
gi|310758609|gb|ADP14058.1| RNAse H [Achromobacter xylosoxidans A8]
Length = 153
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 104/149 (69%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
D + ++V +TDGAC GNPGPGGWGVL+R G EK + GGE +TTNNRMEL+A I+ L
Sbjct: 4 DKANEQKVEMWTDGACKGNPGPGGWGVLMRAGGHEKTLHGGELQTTNNRMELLAVIQGLR 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
ALK PC+V+++TDS YV KG ++W+ W++ GW T+DKK VKN++LW E +H V
Sbjct: 64 ALKRPCRVIIHTDSQYVMKGMTEWLANWKRRGWMTADKKPVKNVELWQLLDEQVQRHTVS 123
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W++GHAG+ NE+ D++A S K
Sbjct: 124 WRWVRGHAGDPGNERADQLANMGVESAKR 152
>gi|157375129|ref|YP_001473729.1| ribonuclease H [Shewanella sediminis HAW-EB3]
gi|189043718|sp|A8FUS8|RNH_SHESH RecName: Full=Ribonuclease H; Short=RNase H
gi|157317503|gb|ABV36601.1| Ribonuclease H [Shewanella sediminis HAW-EB3]
Length = 156
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 105/146 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDG+C GNPGPGG+GV+++YK K I+ G TTNNRMEL+A I AL ALK
Sbjct: 4 MKQLSIFTDGSCLGNPGPGGYGVVMKYKQHTKEIADGFLLTTNNRMELLAPIIALEALKV 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS Y+ +G +QWI W++ GW TS K+ VKN+DLW + AS H++D W+
Sbjct: 64 PCKIVLTSDSQYMRQGITQWIHGWKKKGWITSSKQPVKNVDLWKRLDLASKGHEIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D +AR AA + +
Sbjct: 124 KGHAGHVENERCDTLAREAAEAKPKQ 149
>gi|251770918|gb|EES51503.1| ribonuclease H [Leptospirillum ferrodiazotrophum]
Length = 153
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 102/144 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
EV + DGACSGNPGPGGWGVLLR +G + ISGGE +TTNNRMEL I L+ALK P
Sbjct: 4 DEVELFADGACSGNPGPGGWGVLLRCRGHVREISGGEFQTTNNRMELSGVIAGLSALKKP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G + WI+ W++NG++TS + VKN DLW + +A H++ +W++
Sbjct: 64 CRVMVTTDSQYVKNGMTTWIRSWKKNGFRTSSGQPVKNEDLWRELDRLAALHEITWHWVR 123
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ ENE+VD +AR A S +
Sbjct: 124 GHDGHPENERVDLLAREAISSVRK 147
>gi|296141037|ref|YP_003648280.1| ribonuclease H [Tsukamurella paurometabola DSM 20162]
gi|296029171|gb|ADG79941.1| ribonuclease H [Tsukamurella paurometabola DSM 20162]
Length = 142
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 103/140 (73%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDGAC GNPGPGGWG +LR+ K + G EK+TTNNRMELM AI AL A+ P V+
Sbjct: 2 IYTDGACLGNPGPGGWGAVLRFGEHTKELYGAEKDTTNNRMELMGAISALEAITKPFPVV 61
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
LYTDSSYV G ++W++ W++NGWKT++K+ VKN++LW + E +A++++D W+KGHAG
Sbjct: 62 LYTDSSYVKNGITKWVEGWKRNGWKTANKQPVKNVELWQRLDEVAARYEIDWRWVKGHAG 121
Query: 131 NQENEKVDRIARNAAVSFKN 150
N+ NE D++A A ++
Sbjct: 122 NEGNELADQLASRGAAEARD 141
>gi|161870471|ref|YP_001599643.1| ribonuclease H [Neisseria meningitidis 053442]
gi|161596024|gb|ABX73684.1| ribonuclease HI [Neisseria meningitidis 053442]
Length = 174
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 5 HLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +L
Sbjct: 29 NMDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSL 88
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V
Sbjct: 89 KRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWT 148
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ ENE+ D +A A F
Sbjct: 149 WVKGHAGHAENERADDLANRGAAQF 173
>gi|296444362|ref|ZP_06886327.1| ribonuclease H [Methylosinus trichosporium OB3b]
gi|296258009|gb|EFH05071.1| ribonuclease H [Methylosinus trichosporium OB3b]
Length = 159
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 98/143 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG +LR+ +EK + GGE+ TTNNRMEL AAI AL AL PC
Sbjct: 4 RVAIWTDGACSGNPGPGGWGAILRFGDREKELCGGEEATTNNRMELTAAIMALEALTRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LYTDS YV G S WI W+ GWKT+D+K VKN +LW + A +H V +W++G
Sbjct: 64 PIDLYTDSQYVRDGVSSWIHGWKARGWKTADRKPVKNAELWRRLDAAQERHDVAWHWVRG 123
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG++ NE+ D +AR F+
Sbjct: 124 HAGDEMNERADALARKGMAPFQR 146
>gi|163738225|ref|ZP_02145641.1| ribonuclease HI [Phaeobacter gallaeciensis BS107]
gi|161388841|gb|EDQ13194.1| ribonuclease HI [Phaeobacter gallaeciensis BS107]
Length = 155
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 84/149 (56%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVLLR KEK +SGGE ETTNNRMEL+AAI AL
Sbjct: 1 MAELFAYTDGACSGNPGPGGWGVLLRAMDGETIVKEKELSGGEAETTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L P + + TDS+YV G + WI W++NGWKT+ KK VKN++LW + EA +H V
Sbjct: 61 ENLARPSTLTVVTDSAYVKNGVTGWIHGWKRNGWKTASKKPVKNVELWQRLDEAQRRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFK 149
>gi|260767800|ref|ZP_05876735.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|260617309|gb|EEX42493.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|315179369|gb|ADT86283.1| ribonuclease H [Vibrio furnissii NCTC 11218]
Length = 155
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 106/141 (75%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+GV++RYK EK ++ G + TTNNRME+MAA+ AL LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGVVMRYKQVEKTLAKGYRLTTNNRMEMMAAVVALKTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW +A+H+V+ +W+K
Sbjct: 63 CHVSLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDAETARHQVEWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR+AA +
Sbjct: 123 GHAGHRENEMCDELARSAAEN 143
>gi|33598343|ref|NP_885986.1| ribonuclease H [Bordetella parapertussis 12822]
gi|33603253|ref|NP_890813.1| ribonuclease H [Bordetella bronchiseptica RB50]
gi|81836755|sp|Q7WCJ8|RNH_BORBR RecName: Full=Ribonuclease H; Short=RNase H
gi|33566901|emb|CAE39117.1| ribonuclease HI [Bordetella parapertussis]
gi|33577377|emb|CAE34642.1| ribonuclease HI [Bordetella bronchiseptica RB50]
Length = 155
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 103/145 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGAC GNPGPGGWGVL+R EK + GGE++TTNNRMELMA I+ L ALK P
Sbjct: 11 QQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRP 70
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V ++TDS YV KG ++W+ W++ GW+T+DKK VKN++LW E +H+V W++
Sbjct: 71 CRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVR 130
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ NE+ D +A + + +
Sbjct: 131 GHAGDPGNERADALANQGVEAARGR 155
>gi|56698044|ref|YP_168415.1| ribonuclease H [Ruegeria pomeroyi DSS-3]
gi|81819933|sp|Q5LNJ2|RNH_SILPO RecName: Full=Ribonuclease H; Short=RNase H
gi|56679781|gb|AAV96447.1| ribonuclease HI [Ruegeria pomeroyi DSS-3]
Length = 155
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVLLR KE+ + GGE ETTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L+ P K+ + TDS+YV G + WI W++NGWKT+ KK VKN++LW + A A+H V
Sbjct: 61 ETLERPSKITVVTDSAYVKNGVTGWIFGWKRNGWKTAGKKPVKNVELWQRLDLAQARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR FK K
Sbjct: 121 TWKWVKGHAGHPENERADELARAGMKPFKPK 151
>gi|257438704|ref|ZP_05614459.1| ribonuclease HI [Faecalibacterium prausnitzii A2-165]
gi|257198839|gb|EEU97123.1| ribonuclease HI [Faecalibacterium prausnitzii A2-165]
Length = 181
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 5/147 (3%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAI 57
K +++V YTDGACSGNPGPGGWG +LRY+ EK +SGG+ TTNNRMEL A I
Sbjct: 24 REKQMKQVEVYTDGACSGNPGPGGWGAVLRYRFNGKVYEKELSGGDASTTNNRMELTAFI 83
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+AL LK PC+V L +DS YV G + + W++ GWK SD N DLW + +E A
Sbjct: 84 EALRQLKEPCEVRLCSDSQYVINGLEKGWARGWKRRGWKKSDGSPALNPDLWEQALEQEA 143
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
+HK+ W+KGHAG+ ENE+ D++A
Sbjct: 144 RHKITYVWVKGHAGHPENERCDQLAVA 170
>gi|319410827|emb|CBY91217.1| ribonuclease H [Neisseria meningitidis WUE 2594]
Length = 174
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 5 HLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +L
Sbjct: 29 NMDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSL 88
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V
Sbjct: 89 KRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWT 148
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ ENE+ D +A A F
Sbjct: 149 WVKGHAGHAENERADDLANRGAAQF 173
>gi|126738014|ref|ZP_01753735.1| ribonuclease HI [Roseobacter sp. SK209-2-6]
gi|126720511|gb|EBA17216.1| ribonuclease HI [Roseobacter sp. SK209-2-6]
Length = 153
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/150 (53%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWGVLLR KEK + GGE ETTNNRMEL+AAI AL
Sbjct: 1 MPDLYAYTDGACSGNPGPGGWGVLLRAMDGEAIIKEKELQGGEAETTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L + + TDS+YV G + WI W++NGWKT+ KK VKN++LW + EA ++H+V
Sbjct: 61 ESLARSSTITVVTDSAYVKNGVTGWIFGWKKNGWKTAAKKPVKNVELWQRLDEAQSRHRV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR +K
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPYKK 150
>gi|209517196|ref|ZP_03266041.1| Ribonuclease H [Burkholderia sp. H160]
gi|209502332|gb|EEA02343.1| Ribonuclease H [Burkholderia sp. H160]
Length = 148
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 97/144 (67%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK
Sbjct: 2 TPDHIDIYTDGACKGNPGPGGWGALLRFGSQEKELFGGEANTTNNRMELMGVISALEALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCK +++TDS YV KG S+WI W++ GW T+ K+ VKN DLW + AQH+++ W
Sbjct: 62 RPCKAIVHTDSQYVQKGISEWIHGWKKKGWVTAAKQPVKNADLWKRLDALVAQHEIEWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
++GH G+ ENE+ D++A S
Sbjct: 122 VRGHNGHPENERADQLANRGVASL 145
>gi|34496711|ref|NP_900926.1| ribonuclease H [Chromobacterium violaceum ATCC 12472]
gi|81834716|sp|Q7NYL8|RNH_CHRVO RecName: Full=Ribonuclease H; Short=RNase H
gi|34102566|gb|AAQ58931.1| ribonuclease H [Chromobacterium violaceum ATCC 12472]
Length = 147
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 101/142 (71%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGAC GNPGPGGWG L+RYKGKEK + GGE+ TTNNRME+MA I+AL AL P
Sbjct: 5 DRVEIYTDGACKGNPGPGGWGALMRYKGKEKELFGGERGTTNNRMEIMAVIRALAALNRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWI 125
CKV++YTDS YV KG S+WI W+ GWKT+ K+ VKN DLW + +H V+ W+
Sbjct: 65 CKVVVYTDSQYVQKGISEWIHGWKARGWKTAAKEPVKNADLWQQLDAERNRHLDVEWRWV 124
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ NE+ D++A S
Sbjct: 125 KGHAGHEFNERADQLANKGVES 146
>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
Length = 459
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGVSFCPAD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCTGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHPGNEMADQLANLGADKTAKEL 143
>gi|20150465|pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 104/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +T G+ GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA++
Sbjct: 122 KGHAGHPENERADELARAAAMN 143
>gi|167772111|ref|ZP_02444164.1| hypothetical protein ANACOL_03485 [Anaerotruncus colihominis DSM
17241]
gi|167665909|gb|EDS10039.1| hypothetical protein ANACOL_03485 [Anaerotruncus colihominis DSM
17241]
Length = 188
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++++ +++V +TDGACSGNPG GGWG +LR+ EK +SGG+ +TTNNRMEL A I+AL
Sbjct: 39 LEAETIKQVEIFTDGACSGNPGAGGWGAVLRFGEHEKELSGGQAQTTNNRMELTAVIEAL 98
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ALK PC V L TDS YV S+ WQ+ W + + KN DLW + +HK
Sbjct: 99 SALKEPCSVTLTTDSKYVSDAVSKGWVYGWQKKNWMRAPGEPAKNADLWKLLLPLLGRHK 158
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V +W+KGHAG+ ENE+ D +A A F+
Sbjct: 159 VTFHWVKGHAGHPENERCDALAVAAIARFR 188
>gi|309797894|ref|ZP_07692275.1| ribonuclease HI [Escherichia coli MS 145-7]
gi|308118502|gb|EFO55764.1| ribonuclease HI [Escherichia coli MS 145-7]
Length = 225
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L+ V ++DG+C NPG PGG+G++L+Y G+E+ S G TTNNRME+M A+ L L
Sbjct: 66 QLKTVKIFSDGSCLKNPGGPGGYGIVLQYGGEEREFSDGFHSTTNNRMEMMGALIGLERL 125
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KYPC V+LY+DS Y+ G +QW+K W++NGW TSDKK VKN+DLW + EA+++H V
Sbjct: 126 KYPCNVILYSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKNVDLWKRLDEAASRHNVRWK 185
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG++ENE DR+A+ AA S
Sbjct: 186 WVKGHAGHRENEICDRLAKIAAFSA 210
>gi|300724514|ref|YP_003713837.1| RNase HI, degrades RNA of DNA-RNA hybrids [Xenorhabdus nematophila
ATCC 19061]
gi|297631054|emb|CBJ91740.1| RNase HI, degrades RNA of DNA-RNA hybrids [Xenorhabdus nematophila
ATCC 19061]
Length = 156
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 104/141 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G+LLRY+ EK ++GG TTNNRMELMAAI L LK+P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGILLRYQQHEKKLNGGYFRTTNNRMELMAAIIGLETLKHP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWK +DK V N+DLW + +A ++H++D W+K
Sbjct: 63 CTVILTTDSQYVRQGITQWIHNWKKRGWKKADKSPVINVDLWQRLDKAISRHEIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH G++ENE D +AR AA +
Sbjct: 123 GHTGHRENEICDELARAAANN 143
>gi|269214692|ref|ZP_06158751.1| ribonuclease HI [Neisseria lactamica ATCC 23970]
gi|269209238|gb|EEZ75693.1| ribonuclease HI [Neisseria lactamica ATCC 23970]
Length = 174
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 5 HLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +L
Sbjct: 29 NMDTPVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSL 88
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V
Sbjct: 89 KRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWT 148
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ ENE+ D +A A F
Sbjct: 149 WVKGHAGHAENERADDLANRGAAQF 173
>gi|259909388|ref|YP_002649744.1| ribonuclease H (RNase H) [Erwinia pyrifoliae Ep1/96]
gi|224965010|emb|CAX56540.1| ribonuclease H (RNase H) [Erwinia pyrifoliae Ep1/96]
gi|283479461|emb|CAY75377.1| rnhA [Erwinia pyrifoliae DSM 12163]
Length = 153
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 101/140 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G ++RY EKI S G TTNNRME+MAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAIMRYGKHEKIFSAGFHLTTNNRMEMMAAIVALEALTQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+L TDS YV +G + WI W++ GWKT+DKK VKN+DLW + A + H ++ W+
Sbjct: 62 PCAVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHDINWKWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ ENE+ D +AR AA
Sbjct: 122 KGHAGHVENERCDVLARTAA 141
>gi|149913454|ref|ZP_01901987.1| ribonuclease HI [Roseobacter sp. AzwK-3b]
gi|149812574|gb|EDM72403.1| ribonuclease HI [Roseobacter sp. AzwK-3b]
Length = 152
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVLL+ KE+ +SGGE ETTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGVLLQAIEGDTVLKERELSGGEAETTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L P K+ + TDS+YV G + WI W++NGWKT+ +K VKN++LW + EA A+H V
Sbjct: 61 ETLAKPSKITIVTDSAYVKNGVTGWIHGWKRNGWKTAARKPVKNVELWQRLDEAQARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADALARAGMAPFK 149
>gi|70730661|ref|YP_260402.1| ribonuclease H [Pseudomonas fluorescens Pf-5]
gi|123734801|sp|Q4KBI1|RNH_PSEF5 RecName: Full=Ribonuclease H; Short=RNase H
gi|68344960|gb|AAY92566.1| RNase H [Pseudomonas fluorescens Pf-5]
Length = 150
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMELMAAI+ L LK
Sbjct: 3 DSVEIFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELMAAIRGLEELKRQ 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW + E +H V W++
Sbjct: 63 CDVQLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWQQLDEQVNRHNVTWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHTGHHGNERADQLANRGVDEVR 145
>gi|218887755|ref|YP_002437076.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|226736829|sp|B8DIU7|RNH_DESVM RecName: Full=Ribonuclease H; Short=RNase H
gi|218758709|gb|ACL09608.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 156
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/144 (51%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++ V A+TDG+C GNPGPGGW +LR G E+ +SGG TTNNRME++A I+AL LK
Sbjct: 2 TMKNVQAFTDGSCLGNPGPGGWAAVLRCNGSERELSGGFALTTNNRMEILAVIEALALLK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PC V LYTDS YV + W++NGWKTSDKK VKN DLW + H+V +
Sbjct: 62 EPCGVDLYTDSQYVRNAVEKKWLAGWRRNGWKTSDKKPVKNRDLWERLQPLLDLHQVRFH 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W++GH+G+ ENE+ D +AR A S
Sbjct: 122 WVRGHSGHPENERCDVLARTQASS 145
>gi|259417491|ref|ZP_05741410.1| ribonuclease HI [Silicibacter sp. TrichCH4B]
gi|259346397|gb|EEW58211.1| ribonuclease HI [Silicibacter sp. TrichCH4B]
Length = 161
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG LLR KE+ + GGE+ETTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGALLRAMDGETVVKERELKGGEQETTNNRMELLAAIHAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P K+ + TDS+YV G + WI W++NGWKT+ KK VKN++LW + A A+H V
Sbjct: 61 ESLARPSKITVVTDSAYVKNGVTGWIFGWKKNGWKTAAKKPVKNVELWQRLDAAQARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK+
Sbjct: 121 IWEWVKGHAGHPENERADELARAGMAPFKS 150
>gi|90407280|ref|ZP_01215466.1| putative ribonuclease HI [Psychromonas sp. CNPT3]
gi|90311563|gb|EAS39662.1| putative ribonuclease HI [Psychromonas sp. CNPT3]
Length = 153
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 96/142 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDG+C GNPGPGG+GV+L + K ++ G TTNNRME++A IK L +L
Sbjct: 1 MKKIEIYTDGSCLGNPGPGGYGVVLIFNKHRKELAEGYVRTTNNRMEMLACIKGLQSLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G + WI W++ GWKT+ K VKN+DLW A +H V +W+
Sbjct: 61 RCEVDLTTDSQYVRQGITLWIHNWKKRGWKTASKAPVKNVDLWKALDLAQEKHTVHWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ ENE D +ARNAA +
Sbjct: 121 KGHSGHPENECCDDLARNAAEN 142
>gi|170719140|ref|YP_001784287.1| ribonuclease H [Haemophilus somnus 2336]
gi|168827269|gb|ACA32640.1| Ribonuclease H [Haemophilus somnus 2336]
Length = 154
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 98/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPG GG G+LLRYK EK + G +TTNNRMEL A I AL +LK
Sbjct: 2 LKKIEIFTDGSCLGNPGAGGIGILLRYKQHEKKLYQGFFQTTNNRMELRAVIVALNSLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+LY+DS Y+ G ++WI W++N WKTS VKN DLW +A +H+++ W+
Sbjct: 62 PCSVILYSDSQYMKNGITKWIFNWKKNNWKTSSGNAVKNQDLWCSLDQAIQKHQIEWRWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G++ENE D++A+ A +
Sbjct: 122 KGHNGHRENEICDQLAKQGAEN 143
>gi|329120710|ref|ZP_08249372.1| ribonuclease HI [Neisseria bacilliformis ATCC BAA-1200]
gi|327460507|gb|EGF06843.1| ribonuclease HI [Neisseria bacilliformis ATCC BAA-1200]
Length = 148
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/139 (56%), Positives = 92/139 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVLLRY EK + GGE ETTNNRMEL A I+ L ALK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLLRYGRHEKELFGGEAETTNNRMELTAVIEGLKALKRT 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V + TDS YV G WI W++NGWKTS K+ VKN DLW + +A H V W+K
Sbjct: 63 SCVEICTDSQYVKNGMQSWIHGWKKNGWKTSAKQPVKNEDLWRELDRLAAAHNVSWKWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE+ D +A A
Sbjct: 123 GHAGHPENERADALANRGA 141
>gi|170695449|ref|ZP_02886594.1| Ribonuclease H [Burkholderia graminis C4D1M]
gi|170139640|gb|EDT07823.1| Ribonuclease H [Burkholderia graminis C4D1M]
Length = 148
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGWG LLR+ +EK + GGE TTNNRMELM I AL ALK PCK
Sbjct: 6 IDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGEANTTNNRMELMGVISALEALKRPCK 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+++TDS YV KG S+WI W++ GW T+ K+ VKN DLW + AQH+++ W++GH
Sbjct: 66 AVVHTDSQYVQKGISEWIHGWKKKGWVTAAKQPVKNADLWKRLDALVAQHEIEWRWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSF 148
G+ ENE+ D++A S
Sbjct: 126 NGHPENERADQLANRGVASL 145
>gi|254293410|ref|YP_003059433.1| ribonuclease H [Hirschia baltica ATCC 49814]
gi|254041941|gb|ACT58736.1| Ribonuclease H [Hirschia baltica ATCC 49814]
Length = 321
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/140 (50%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDGACSGNPGPGGWG L+ G+E + GGE TTNNRMELM AI+AL ++ K
Sbjct: 5 IEIWTDGACSGNPGPGGWGALIVNDGQEIELYGGEANTTNNRMELMGAIEALNSINTSSK 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ L+TDS+YV G +QWI W++NGWKT+ K+ VKN DLW EA +H+++ W+KGH
Sbjct: 65 ITLHTDSTYVKNGLTQWIHGWKRNGWKTASKQPVKNKDLWQALDEACKRHQIEWKWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
+G++ NE+ D +A A
Sbjct: 125 SGDEGNERADSLAVKGAREA 144
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 79/144 (54%), Positives = 105/144 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V +TDGACSGNPGPGGWG LL+ EK + GGEK+TTNNRMELM AI+ALT+LK P
Sbjct: 177 QVQIWTDGACSGNPGPGGWGALLKMGEHEKELYGGEKDTTNNRMELMGAIEALTSLKGPS 236
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V+L TDS+YV G ++WI W++NGWKT+ KK VKN DLW EA ++H+++ W+KG
Sbjct: 237 NVILSTDSTYVKDGLTKWIHGWKKNGWKTAAKKPVKNQDLWQALDEACSRHQIEWRWVKG 296
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
HAG++ NE+ D +A ++ K
Sbjct: 297 HAGDEGNERADGLAVKGSMEASGK 320
>gi|21230448|ref|NP_636365.1| ribonuclease H [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769558|ref|YP_244320.1| ribonuclease H [Xanthomonas campestris pv. campestris str. 8004]
gi|188992766|ref|YP_001904776.1| ribonuclease H [Xanthomonas campestris pv. campestris str. B100]
gi|25009127|sp|Q8PBX8|RNH_XANCP RecName: Full=Ribonuclease H; Short=RNase H
gi|81304487|sp|Q4URM3|RNH_XANC8 RecName: Full=Ribonuclease H; Short=RNase H
gi|21112011|gb|AAM40289.1| ribonuclease H [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574890|gb|AAY50300.1| ribonuclease H [Xanthomonas campestris pv. campestris str. 8004]
gi|167734526|emb|CAP52736.1| ribonuclease H [Xanthomonas campestris pv. campestris]
Length = 150
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEANSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++LL+TDS YV +G ++W+ W + GWKTS VKN +LW + A+ +H ++ W+
Sbjct: 61 PCQILLHTDSQYVRQGITEWMPGWVRRGWKTSGGDPVKNRELWERLHAATQRHSIEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ + +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRGGL 147
>gi|293390397|ref|ZP_06634731.1| ribonuclease HI [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950931|gb|EFE01050.1| ribonuclease HI [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 155
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G+LLRYK EK +S G TTNNRMEL+A ++AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGILLRYKQHEKKLSKGFFLTTNNRMELLAVVEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G +QWI W++N WK S K VKN DLWM +A A+HKVD W+K
Sbjct: 63 CDIHLYSDSQYMKNGITQWIFNWKKNHWKASSGKPVKNQDLWMALDQAIARHKVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D++A+ A +
Sbjct: 123 GHAGHRENEICDQLAKRGAEN 143
>gi|197106350|ref|YP_002131727.1| ribonuclease HI [Phenylobacterium zucineum HLK1]
gi|238690129|sp|B4R8T3|RNH_PHEZH RecName: Full=Ribonuclease H; Short=RNase H
gi|196479770|gb|ACG79298.1| ribonuclease HI [Phenylobacterium zucineum HLK1]
Length = 153
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 82/137 (59%), Positives = 100/137 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
EV YTDGACSGNPGPGGWG +L + +EK + GGE TTNNRMELMAAI+AL ALK PC
Sbjct: 4 EVVIYTDGACSGNPGPGGWGAILIHGEREKELCGGEAATTNNRMELMAAIQALEALKRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V L+TDS YV KG +WI W++ GW T+DKK VKN DLW + A +H VD W+KG
Sbjct: 64 RVELHTDSQYVQKGIHEWIHGWKKRGWLTADKKPVKNDDLWKRLDAARLRHHVDWRWVKG 123
Query: 128 HAGNQENEKVDRIARNA 144
HAG++ NE+ D +AR
Sbjct: 124 HAGHELNERADALARKG 140
>gi|325925276|ref|ZP_08186680.1| RNase HI [Xanthomonas perforans 91-118]
gi|325544322|gb|EGD15701.1| RNase HI [Xanthomonas perforans 91-118]
Length = 150
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 106/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ ++ +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRDGL 147
>gi|312883832|ref|ZP_07743551.1| ribonuclease H [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368581|gb|EFP96114.1| ribonuclease H [Vibrio caribbenthicus ATCC BAA-2122]
Length = 154
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G++LRYK EK ++ G TTNNRME+MA I AL LK P
Sbjct: 3 KQVEIFTDGSCLGNPGPGGYGIVLRYKKVEKTLAQGYAMTTNNRMEMMATIVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V+L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +H +D W+K
Sbjct: 63 CDVILTTDSQYVRQGITQWIHNWKKRGWKTADKKQVKNADLWQALDTETQRHNIDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D +AR AA +
Sbjct: 123 GHAGHRENEMCDELARQAAEN 143
>gi|262204391|ref|YP_003275599.1| ribonuclease H [Gordonia bronchialis DSM 43247]
gi|262087738|gb|ACY23706.1| Ribonuclease H [Gordonia bronchialis DSM 43247]
Length = 159
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 83/140 (59%), Positives = 100/140 (71%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGAC GNPGPGGWG +LRY+G EK ISGGE +TNN+MEL AAI+ L AL P
Sbjct: 12 VEISTDGACLGNPGPGGWGAVLRYRGTEKRISGGEPNSTNNKMELTAAIEGLAALTRPST 71
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+LYTDS+YV G ++W+K WQ+NGWKT+DKK VKN DLW + VE H V+ W+KGH
Sbjct: 72 VILYTDSTYVRNGITKWVKGWQRNGWKTADKKPVKNADLWRRLVEEEKVHTVEWRWVKGH 131
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+Q NE D +A AA
Sbjct: 132 AGDQYNEIADELATTAARQI 151
>gi|193215034|ref|YP_001996233.1| ribonuclease H [Chloroherpeton thalassium ATCC 35110]
gi|193088511|gb|ACF13786.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110]
Length = 146
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPG GGWG +L + K + ISG E +TTNNRME+MAAI+AL LK
Sbjct: 1 MKQVVIYTDGACSGNPGKGGWGAVLIFGEKRREISGYEAQTTNNRMEMMAAIQALEQLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LY+DSSY+ F++ W + GWKT+ KK V N DLW + + ++ H+V +
Sbjct: 61 PCAVDLYSDSSYLVNAFNEGWIDGWLRRGWKTAGKKPVLNQDLWQRLLGLTSSHQVTFHK 120
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+KGH+ ++ N + D +A A
Sbjct: 121 VKGHSTDELNNRCDFLATEAIK 142
>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
Length = 459
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGVSFCPAD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCTGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHPGNEMADQLANLGADKTAKEL 143
>gi|46199493|ref|YP_005160.1| ribonuclease H [Thermus thermophilus HB27]
gi|81830588|sp|Q72IE1|RNH_THET2 RecName: Full=Ribonuclease H; Short=RNase H
gi|46197119|gb|AAS81533.1| ribonuclease H [Thermus thermophilus HB27]
Length = 166
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ + V +TDGAC GNPGPGGW LLR+ EK++SGGE TTNNRMEL AAI+ L
Sbjct: 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFNAHEKLLSGGEACTTNNRMELKAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
ALK PC+V LYTDS Y+ K F++ + W++ GW+T++ K VKN DLW + A A H+
Sbjct: 61 KALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V +++KGH G+ ENE+VDR AR A S
Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQAQSQAK 151
>gi|261868454|ref|YP_003256376.1| ribonuclease H [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413786|gb|ACX83157.1| ribonuclease HI [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 155
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G+LLRYK EK +S G TTNNRMEL+A ++AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGILLRYKQHEKKLSKGFFLTTNNRMELLAVVEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G +QWI W++N WK S K VKN DLWM +A A+HKVD W+K
Sbjct: 63 CDIHLYSDSQYMKNGITQWIFNWKKNHWKASSGKPVKNQDLWMALDQAIARHKVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D++A+ A +
Sbjct: 123 GHAGHRENEICDQLAKQGAEN 143
>gi|325578762|ref|ZP_08148809.1| ribonuclease H [Haemophilus parainfluenzae ATCC 33392]
gi|325159586|gb|EGC71718.1| ribonuclease H [Haemophilus parainfluenzae ATCC 33392]
Length = 153
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G++LRYK EK IS G +TTNNRMEL A I+AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGIVLRYKQHEKHISKGYFKTTNNRMELRAVIEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LY+DS Y+ G +QWI W++N WK S K VKN DLW+ +A H +D W+K
Sbjct: 63 CHVTLYSDSQYMKNGITQWIYTWKKNNWKASTGKAVKNQDLWIALDQAIQTHNIDWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ENE D +A+ A +
Sbjct: 123 GHSGHRENEICDELAKQGAEN 143
>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
Length = 459
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A +I
Sbjct: 118 GHAGHPGNEMADQLANLGADKTAQEI 143
>gi|284928670|ref|YP_003421192.1| RNase HI [cyanobacterium UCYN-A]
gi|284809129|gb|ADB94834.1| RNase HI [cyanobacterium UCYN-A]
Length = 157
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDGACSGNPG GG+GV+L + K +SGG + TTNNRME+++ I L AL
Sbjct: 1 MKKLKIYTDGACSGNPGKGGYGVILVFNKYRKELSGGYRLTTNNRMEIISIIIGLEALTK 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C V +Y+DS YV ++ Q+ + ++ KN DLW + ++ +H V W
Sbjct: 61 LCNVTIYSDSRYVVDTMNKGWASKWQSNNWKRNKQEIAKNSDLWKRLLDLCTKHNVQFIW 120
Query: 125 IKGHAGNQENEKVDRIARNA---AVSFKNKI 152
+KGH+G+ ENE+ D++A A F +K+
Sbjct: 121 VKGHSGHPENERCDQLAVLASKRMELFIDKV 151
>gi|226945028|ref|YP_002800101.1| ribonuclease H [Azotobacter vinelandii DJ]
gi|226719955|gb|ACO79126.1| Ribonuclease H [Azotobacter vinelandii DJ]
Length = 152
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 97/145 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+V YTDGAC GNPGPGGWG LL +G E+ + GGE ETTNNRMEL AAI+AL LK P
Sbjct: 3 DKVEIYTDGACKGNPGPGGWGALLVCQGVERELWGGEAETTNNRMELTAAIRALAELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +W+ W++ GWKT+ ++ VKN DLW + E +H+V W++
Sbjct: 63 CEVHLTTDSEYVMRGILEWLPNWKKRGWKTAARQPVKNADLWQQLDEQVGRHRVTWGWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH G+ NE+ D +A + + +
Sbjct: 123 GHTGHPGNERADLLANRGVAAARAQ 147
>gi|171463546|ref|YP_001797659.1| ribonuclease H [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193084|gb|ACB44045.1| ribonuclease H [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 154
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 92/146 (63%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S H + YTDGAC GNPGPGGWG +LR G EK I GGEK TTNNRME+ A I AL A
Sbjct: 7 SHHQPHIVIYTDGACKGNPGPGGWGAVLRSGGHEKHIHGGEKLTTNNRMEICAVIFALKA 66
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK V L+TDS YV KG ++W++ W++ GWKT+ K VKN DLW + H +
Sbjct: 67 LKQSSTVELWTDSQYVQKGVTEWLEGWKKRGWKTASKDPVKNADLWQELDTLIPDHDISW 126
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
+W++GH G+ NE D++A F
Sbjct: 127 HWVRGHDGHPGNELADQLANKGVEEF 152
>gi|304320024|ref|YP_003853667.1| ribonuclease H [Parvularcula bermudensis HTCC2503]
gi|303298927|gb|ADM08526.1| ribonuclease H [Parvularcula bermudensis HTCC2503]
Length = 140
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/137 (51%), Positives = 89/137 (64%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGACSGNPGPGGWGVL+ + ++GGE TTNNRMEL AAIKAL ++
Sbjct: 2 IEIYTDGACSGNPGPGGWGVLIEWGEDTSRLNGGEPNTTNNRMELTAAIKALESVDPKTP 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
LYTDS YV G WI W++NGW+T++KK VKN DLW + + V W+KGH
Sbjct: 62 FTLYTDSQYVKNGVETWIHGWKRNGWRTANKKPVKNQDLWQTLDRLAQERAVTWKWVKGH 121
Query: 129 AGNQENEKVDRIARNAA 145
AG+ NE+ DR+AR
Sbjct: 122 AGHPGNEEADRLAREGM 138
>gi|330810141|ref|YP_004354603.1| ribonuclease HI [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327378249|gb|AEA69599.1| ribonuclease HI [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 150
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMELM AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGETNTTNNRMELMGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C VLL TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E ++H V W++
Sbjct: 63 CDVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKLLDEQVSRHNVTWKWVR 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH G+ NE+ D++A +
Sbjct: 123 GHIGHHGNERADQLANRGVDEVR 145
>gi|113460749|ref|YP_718816.1| ribonuclease H [Haemophilus somnus 129PT]
gi|112822792|gb|ABI24881.1| RNase HI [Haemophilus somnus 129PT]
Length = 154
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 98/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPG GG G+LLRYK EK + G +TTNNRMEL A I AL +LK
Sbjct: 2 LKKIEIFTDGSCLGNPGAGGIGILLRYKQHEKKLYQGFFQTTNNRMELRAVIVALNSLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V+LY+DS Y+ G ++WI W++N WKTS VKN DLW +A +H+++ W+
Sbjct: 62 PCSVILYSDSQYMKNGITKWIFNWKKNNWKTSSGNAVKNQDLWCSLDQAIQKHQIEWRWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G++ENE D++A+ A +
Sbjct: 122 KGHNGHRENEICDQLAKQGAEN 143
>gi|194099521|ref|YP_002002645.1| ribonuclease H [Neisseria gonorrhoeae NCCP11945]
gi|291043009|ref|ZP_06568744.1| ribonuclease H [Neisseria gonorrhoeae DGI2]
gi|293398346|ref|ZP_06642537.1| ribonuclease HI [Neisseria gonorrhoeae F62]
gi|193934811|gb|ACF30635.1| ribonuclease H [Neisseria gonorrhoeae NCCP11945]
gi|291013049|gb|EFE05020.1| ribonuclease H [Neisseria gonorrhoeae DGI2]
gi|291611270|gb|EFF40354.1| ribonuclease HI [Neisseria gonorrhoeae F62]
gi|317165021|gb|ADV08562.1| ribonuclease H [Neisseria gonorrhoeae TCDC-NG08107]
Length = 174
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 95/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +LK C
Sbjct: 34 VYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 93
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+KGH
Sbjct: 94 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWQELDALVGQHQVSWTWVKGH 153
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 154 AGHAENERADDLANRGAAQF 173
>gi|77360889|ref|YP_340464.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas
haloplanktis TAC125]
gi|123771594|sp|Q3IIS1|RNH_PSEHT RecName: Full=Ribonuclease H; Short=RNase H
gi|76875800|emb|CAI87021.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas
haloplanktis TAC125]
Length = 154
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/141 (51%), Positives = 95/141 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+G+ + Y EK +S G K TTNNRME++ AI AL L P
Sbjct: 3 KTVEIYTDGSCLGNPGPGGYGIFMIYNEHEKKLSQGYKLTTNNRMEMLGAIVALEVLTRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + + TDS YV +G WI W++ GW TS KK VKN+DLW + A A+H V W+K
Sbjct: 63 CVINITTDSQYVKQGIESWITNWKKRGWLTSAKKPVKNVDLWKRLDLACAKHTVTWKWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ NE VD +AR+AA S
Sbjct: 123 GHSGHKYNEIVDDLARDAAGS 143
>gi|119471755|ref|ZP_01614115.1| RNase HI, degrades RNA of DNA-RNA hybrids [Alteromonadales
bacterium TW-7]
gi|119445378|gb|EAW26666.1| RNase HI, degrades RNA of DNA-RNA hybrids [Alteromonadales
bacterium TW-7]
Length = 154
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/141 (52%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+G+ + Y EK +S G K TTNNRME++AAI AL +L
Sbjct: 3 KTVEIYTDGSCLGNPGPGGYGIFMIYDAHEKKLSQGYKLTTNNRMEMLAAIVALESLNRA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G WI W++ GW TS KK VKN+DLW + A ++H V+ W+K
Sbjct: 63 CVVNLTTDSQYVKQGIESWISNWKKRGWITSAKKPVKNVDLWKRLDAACSKHTVNWKWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ NE VD +AR+AA S
Sbjct: 123 GHSGHKYNEIVDDLARDAAGS 143
>gi|74317681|ref|YP_315421.1| ribonuclease HI [Thiobacillus denitrificans ATCC 25259]
gi|123745452|sp|Q3SIB2|RNH_THIDA RecName: Full=Ribonuclease H; Short=RNase H
gi|74057176|gb|AAZ97616.1| ribonuclease HI [Thiobacillus denitrificans ATCC 25259]
Length = 148
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 93/141 (65%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y+DGAC GNPG GGWG LL G K ISGGE TTNNRME+ A I+AL LK P
Sbjct: 6 IYIYSDGACKGNPGAGGWGALLVAGGHRKEISGGEPNTTNNRMEMTAVIRALELLKRPST 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V ++TDS YV KG S+W+ W++ W+T+D K VKN DLW + S QH++ W++GH
Sbjct: 66 VEVHTDSQYVQKGVSEWLPGWKRRNWRTADGKPVKNQDLWQQLDALSQQHRIVWKWVRGH 125
Query: 129 AGNQENEKVDRIARNAAVSFK 149
AG+ ENE+ D +A + +
Sbjct: 126 AGHPENERADVLANQGVLQAR 146
>gi|304413387|ref|ZP_07394860.1| ribonuclease H [Candidatus Regiella insecticola LSR1]
gi|304284230|gb|EFL92623.1| ribonuclease H [Candidatus Regiella insecticola LSR1]
Length = 185
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 100/141 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EKI+S G TTNNRMELMAAI AL AL P
Sbjct: 27 KQVEIFTDGSCLGNPGPGGYGAILRYKQHEKILSDGYYLTTNNRMELMAAIIALEALTSP 86
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L +DS YV +G S+WI W++ GWKT+ + VKN DLW + H+V W+K
Sbjct: 87 CQVRLSSDSQYVRQGISEWIHNWKKRGWKTTQRTPVKNADLWQRLDGVIQNHQVTWLWVK 146
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ ENE+ D++AR AA +
Sbjct: 147 GHAGHLENERCDQLARIAANN 167
>gi|254476383|ref|ZP_05089769.1| ribonuclease HI [Ruegeria sp. R11]
gi|214030626|gb|EEB71461.1| ribonuclease HI [Ruegeria sp. R11]
Length = 155
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWG LLR KEK + GGE ETTNNRMEL+AAI AL
Sbjct: 1 MAELFAYTDGACSGNPGPGGWGALLRAMDGDTVIKEKELKGGEAETTNNRMELLAAIHAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P + + TDS+YV G + WI W++NGWKT+ KK VKN++LW + EA +H V
Sbjct: 61 ESLARPSTITVVTDSAYVKNGVTGWIHGWKRNGWKTASKKPVKNVELWQRLDEAQRRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFK 149
>gi|94987198|ref|YP_595131.1| ribonuclease H [Lawsonia intracellularis PHE/MN1-00]
gi|94731447|emb|CAJ54810.1| Ribonuclease HI [Lawsonia intracellularis PHE/MN1-00]
Length = 161
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M S +L+ V +TDG+C GNPG GGW +LRY E+ ISGG TTNNRME++AAI AL
Sbjct: 1 MRSNYLKSVEVFTDGSCLGNPGAGGWAAILRYGDYEQEISGGFSYTTNNRMEMIAAIYAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
LK C V+LYTDS Y+ + W++N WKT+ KK VKN DLW + +H
Sbjct: 61 EKLKESCLVMLYTDSQYLRNAVEKQWLVFWEKNNWKTASKKPVKNQDLWKRLQRQLERHN 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V W++GH+G+ ENE+ D +AR A
Sbjct: 121 VIFTWVRGHSGHFENERCDNLARMEA 146
>gi|148555602|ref|YP_001263184.1| ribonuclease H [Sphingomonas wittichii RW1]
gi|148500792|gb|ABQ69046.1| ribonuclease H [Sphingomonas wittichii RW1]
Length = 146
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 79/140 (56%), Positives = 105/140 (75%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGAC GNPG GGWG LLR+ EK +SG E +TNNRMELMAAI+AL ALK PC+
Sbjct: 7 VEIATDGACKGNPGRGGWGALLRFGATEKEMSGAENPSTNNRMELMAAIRALEALKKPCR 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS YV G ++WI W++NGWKT+DKK VKN +LW + ++A+A H+++ W+KGH
Sbjct: 67 VKLSTDSRYVMDGLTKWIHGWRKNGWKTADKKPVKNAELWQRLLDAAAPHRIEWIWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ +NE+ D++A +AA+
Sbjct: 127 AGHPDNERADKLASDAALGL 146
>gi|126733754|ref|ZP_01749501.1| ribonuclease HI [Roseobacter sp. CCS2]
gi|126716620|gb|EBA13484.1| ribonuclease HI [Roseobacter sp. CCS2]
Length = 150
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 99/149 (66%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG LL + KE+ + GGE +TTNNRMEL+AAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGALLVARDGDKVLKERELCGGEADTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L + + TDSSYV G +QWI W+ GWKT+ KK VKN DLW + E +A+H V
Sbjct: 61 ETLDRSTALTIVTDSSYVKDGITQWIHGWKARGWKTAAKKPVKNEDLWKRLDEVTARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENEK D +AR FK
Sbjct: 121 TWEWVKGHAGHPENEKADELARAGMEPFK 149
>gi|315126185|ref|YP_004068188.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas sp.
SM9913]
gi|315014699|gb|ADT68037.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas sp.
SM9913]
Length = 154
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/139 (53%), Positives = 98/139 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GNPGPGG+G+ + Y+ EK +S G K TTNNRME++AAI AL +L
Sbjct: 3 KTVEIYTDGSCLGNPGPGGYGIFMIYEAHEKKLSQGYKLTTNNRMEMLAAIVALESLNRS 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G WI W++ GW+TS KK VKN+DLW + +A A+H V W+K
Sbjct: 63 CPVTLTTDSQYVKQGIESWITNWKKRGWQTSAKKPVKNVDLWKRLDKACAEHDVTWKWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+G++ NE VD +AR+AA
Sbjct: 123 GHSGHKYNEIVDDLARDAA 141
>gi|83945317|ref|ZP_00957665.1| ribonuclease H [Oceanicaulis alexandrii HTCC2633]
gi|83851151|gb|EAP89008.1| ribonuclease H [Oceanicaulis alexandrii HTCC2633]
Length = 148
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 80/144 (55%), Positives = 102/144 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDGACSGNPGPGGWG +L +KG EK +SG E ETTNNRMELMAAI AL ALK
Sbjct: 4 NTIVIHTDGACSGNPGPGGWGAILHWKGHEKELSGAEAETTNNRMELMAAIAALEALKRR 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V L TDS+YV G ++WI W++NGWKT+ KK VKN DLW + +++H V W+K
Sbjct: 64 STVRLVTDSTYVRDGVTKWIHGWKRNGWKTAAKKPVKNDDLWKRLDAIASKHDVTWEWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ ENE+ D++AR+A +
Sbjct: 124 GHAGHPENERADQLARDAIATLSK 147
>gi|325267867|ref|ZP_08134517.1| ribonuclease HI [Kingella denitrificans ATCC 33394]
gi|324980748|gb|EGC16410.1| ribonuclease HI [Kingella denitrificans ATCC 33394]
Length = 154
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 3 SKHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + V+ +TDGAC GNPG GGWGVLLRY EK + GGE +TTNNRMEL A + L
Sbjct: 5 REPMEKTVYLFTDGACKGNPGAGGWGVLLRYGTHEKELFGGEVQTTNNRMELTAVLSGLK 64
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L PC V++ TDS YV G WI W++NGWKT+ ++ VKN DLW + E A+H+V
Sbjct: 65 TLNRPCDVVICTDSQYVKNGMESWIHNWKKNGWKTAGRQPVKNADLWQQLDEQVARHRVR 124
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG+ ENE+ D +A
Sbjct: 125 WQWVKGHAGHAENERADALANRGVEQA 151
>gi|115526123|ref|YP_783034.1| ribonuclease H [Rhodopseudomonas palustris BisA53]
gi|115520070|gb|ABJ08054.1| RNase HI [Rhodopseudomonas palustris BisA53]
Length = 153
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 83/141 (58%), Positives = 103/141 (73%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L V +TDGACSGNPGPGGWG +L++ +EK + GGE TTNNRMELMAAI AL AL
Sbjct: 2 STLPAVLIHTDGACSGNPGPGGWGAILKFGEREKELKGGESHTTNNRMELMAAISALEAL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PC V L+TDS YV G S WI W++NGWKT+DKK VKN+DLW + A QH+V +
Sbjct: 62 TKPCSVDLHTDSQYVRNGISSWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKQHEVRWH 121
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W+KGHAG+ ENE+ D++AR+
Sbjct: 122 WVKGHAGHAENERADQLARDG 142
>gi|301155942|emb|CBW15412.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Haemophilus
parainfluenzae T3T1]
Length = 153
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G++LRYK EK IS G +TTNNRMEL A I+AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGIVLRYKQHEKHISKGYFKTTNNRMELRAVIEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LY+DS Y+ G +QWI W++N WK S K VKN DLW+ +A H +D W+K
Sbjct: 63 CHVTLYSDSQYMKNGITQWIYNWKKNNWKASTGKAVKNQDLWIALDQAIQTHNIDWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G++ENE D +A+ A +
Sbjct: 123 GHSGHRENEICDELAKQGAEN 143
>gi|134300295|ref|YP_001113791.1| ribonuclease H [Desulfotomaculum reducens MI-1]
gi|187611367|sp|A4J7B3|RNH_DESRM RecName: Full=Ribonuclease H; Short=RNase H
gi|134052995|gb|ABO50966.1| RNase HI [Desulfotomaculum reducens MI-1]
Length = 159
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+L+E+ YTDGACSGNPGPGG+GV++ YKG K +S G ++TTNNRMEL+A I L LK
Sbjct: 8 NLKEITMYTDGACSGNPGPGGYGVVMLYKGHRKELSAGFRDTTNNRMELLATIVGLETLK 67
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
C V LYTDS YV + KKW+ NGW + K+ N DLW + ++ H V
Sbjct: 68 EKCNVNLYTDSQYVVNAIEKGWAKKWRANGWMRNKKEPALNPDLWERLLKLCEFHNVKFN 127
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D++A AA
Sbjct: 128 WVKGHAGHPENERCDQLAVAAAKQ 151
>gi|172039303|ref|YP_001805804.1| ribonuclease H [Cyanothece sp. ATCC 51142]
gi|171700757|gb|ACB53738.1| ribonuclease H [Cyanothece sp. ATCC 51142]
Length = 155
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPG GG+G++L + K +SGG + TTNNRME+MAAI L ALK
Sbjct: 1 MKKVQIYTDGACSGNPGKGGYGIILVHNEHRKELSGGYRLTTNNRMEMMAAIIGLEALKM 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYW 124
PC V LYTDS Y+ ++ K Q +KK + ++ +H+V+ W
Sbjct: 61 PCDVTLYTDSRYLVDAITKGWAKKWQGNGWKRNKKETAKNPDLWQKLLDLCEEHEVEFVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHAG+ ENE+ DR+A AA
Sbjct: 121 VKGHAGHPENEQCDRLAVTAAQQ 143
>gi|325277452|ref|ZP_08143060.1| ribonuclease H [Pseudomonas sp. TJI-51]
gi|324097410|gb|EGB95648.1| ribonuclease H [Pseudomonas sp. TJI-51]
Length = 141
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 99/140 (70%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDGAC GNPGPGGWGVL+ YKG EK + GGE+ETTNNRMELMAAI+ L +LK C+V+L
Sbjct: 1 FTDGACKGNPGPGGWGVLMIYKGVEKELWGGERETTNNRMELMAAIQGLMSLKRECEVVL 60
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW E +HKV W++GH G+
Sbjct: 61 TTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVNRHKVTWKWVRGHIGH 120
Query: 132 QENEKVDRIARNAAVSFKNK 151
NE+ D++A + +
Sbjct: 121 PGNERADQLANRGVDEVRAQ 140
>gi|126726106|ref|ZP_01741948.1| ribonuclease HI [Rhodobacterales bacterium HTCC2150]
gi|126705310|gb|EBA04401.1| ribonuclease HI [Rhodobacterales bacterium HTCC2150]
Length = 150
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 84/150 (56%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVLL K +EK + GGE+ETTNNRMELMAAI AL
Sbjct: 1 MPDLFAYTDGACSGNPGPGGWGVLLIAKNADKVLREKELCGGEQETTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L P + + TDS YV G +QW+ W++NGWKT+ KK VKN +LW + EA A+H+V
Sbjct: 61 ENLSRPSTLTIITDSVYVKNGVTQWVHGWKRNGWKTASKKPVKNEELWKRIDEAQARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
WIKGHAG++ENE+ D +AR FK
Sbjct: 121 TWKWIKGHAGHEENERADELARRGMAPFKK 150
>gi|126174223|ref|YP_001050372.1| ribonuclease H [Shewanella baltica OS155]
gi|153000539|ref|YP_001366220.1| ribonuclease H [Shewanella baltica OS185]
gi|160875176|ref|YP_001554492.1| ribonuclease H [Shewanella baltica OS195]
gi|217973495|ref|YP_002358246.1| ribonuclease H [Shewanella baltica OS223]
gi|304408610|ref|ZP_07390231.1| Ribonuclease H [Shewanella baltica OS183]
gi|307305438|ref|ZP_07585186.1| Ribonuclease H [Shewanella baltica BA175]
gi|189043712|sp|A3D440|RNH_SHEB5 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043713|sp|A6WMW8|RNH_SHEB8 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043714|sp|A9L0F2|RNH_SHEB9 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808028|sp|B8E599|RNH_SHEB2 RecName: Full=Ribonuclease H; Short=RNase H
gi|125997428|gb|ABN61503.1| ribonuclease H [Shewanella baltica OS155]
gi|151365157|gb|ABS08157.1| Ribonuclease H [Shewanella baltica OS185]
gi|160860698|gb|ABX49232.1| Ribonuclease H [Shewanella baltica OS195]
gi|217498630|gb|ACK46823.1| Ribonuclease H [Shewanella baltica OS223]
gi|304352431|gb|EFM16828.1| Ribonuclease H [Shewanella baltica OS183]
gi|306911741|gb|EFN42166.1| Ribonuclease H [Shewanella baltica BA175]
gi|315267370|gb|ADT94223.1| Ribonuclease H [Shewanella baltica OS678]
Length = 156
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL +LK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIIALESLKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L +DS Y+ +G WI W++ GW TS++ VKN+DLW + +AS H +D W+
Sbjct: 64 PCQVVLTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKASQMHTIDWQWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA S
Sbjct: 124 KGHAGHAENERCDVLARTAAES 145
>gi|24374103|ref|NP_718146.1| ribonuclease HI [Shewanella oneidensis MR-1]
gi|38372422|sp|Q8EE30|RNH_SHEON RecName: Full=Ribonuclease HI; Short=RNase HI
gi|146386464|pdb|2E4L|A Chain A, Thermodynamic And Structural Analysis Of Thermolabile
Rnase Hi From Shewanella Oneidensis Mr-1
gi|24348590|gb|AAN55590.1|AE015697_12 ribonuclease HI [Shewanella oneidensis MR-1]
Length = 158
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 106/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL ALK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS Y+ +G WI W++ GW TS++ VKN+DLW + +A+ H++D W+
Sbjct: 64 PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D++AR AA + +I
Sbjct: 124 KGHAGHAENERCDQLARAAAEANPTQI 150
>gi|58580664|ref|YP_199680.1| ribonuclease H [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84622597|ref|YP_449969.1| ribonuclease H [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|166710937|ref|ZP_02242144.1| ribonuclease H [Xanthomonas oryzae pv. oryzicola BLS256]
gi|188578362|ref|YP_001915291.1| ribonuclease H [Xanthomonas oryzae pv. oryzae PXO99A]
gi|81311959|sp|Q5H426|RNH_XANOR RecName: Full=Ribonuclease H; Short=RNase H
gi|123739173|sp|Q2P6Y2|RNH_XANOM RecName: Full=Ribonuclease H; Short=RNase H
gi|58425258|gb|AAW74295.1| ribonuclease H [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84366537|dbj|BAE67695.1| Ribonuclease H [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522814|gb|ACD60759.1| RNase H [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 150
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 104/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCEIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ +NE+VD +ARN A + ++
Sbjct: 121 KGHNGDPDNERVDVLARNQATAQRD 145
>gi|120554454|ref|YP_958805.1| ribonuclease H [Marinobacter aquaeolei VT8]
gi|187611379|sp|A1U0U9|RNH_MARAV RecName: Full=Ribonuclease H; Short=RNase H
gi|120324303|gb|ABM18618.1| ribonuclease H [Marinobacter aquaeolei VT8]
Length = 147
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 99/141 (70%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGV+LRY K + GGE +TTNNRMELMAAI+ L LK C
Sbjct: 4 KVVMYTDGACKGNPGPGGWGVVLRYGDACKTMHGGELQTTNNRMELMAAIRGLRELKRAC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V LYTDS YV KG ++W+ W++NGWKTS KK VKN DLW + +A+H V+ +W+KG
Sbjct: 64 QVELYTDSQYVRKGITEWMSGWKRNGWKTSAKKPVKNADLWQELDAETARHTVNWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ +NE D +A
Sbjct: 124 HSGHPDNELADELANRGVREL 144
>gi|332529405|ref|ZP_08405366.1| ribonuclease H [Hylemonella gracilis ATCC 19624]
gi|332041203|gb|EGI77568.1| ribonuclease H [Hylemonella gracilis ATCC 19624]
Length = 172
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 7/146 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWGVLLR G EK + GGE TTNNRMELMA I+AL ALK PC
Sbjct: 22 VEIYTDGACKGNPGPGGWGVLLRSAGVEKELFGGEPATTNNRMELMAVIQALEALKRPCH 81
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-------EASAQHKVD 121
V+L+ DS YV KG ++W+ W+ GWKT+ K+ VKN+DLW + A H+++
Sbjct: 82 VVLHADSQYVLKGITEWLVGWKAKGWKTASKQPVKNVDLWQRLDLLVNGAPGQVATHRIE 141
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGH G+ NE+ D +A
Sbjct: 142 WRWVKGHDGDPGNERADALANRGVEQ 167
>gi|154496142|ref|ZP_02034838.1| hypothetical protein BACCAP_00426 [Bacteroides capillosus ATCC
29799]
gi|150274697|gb|EDN01761.1| hypothetical protein BACCAP_00426 [Bacteroides capillosus ATCC
29799]
Length = 146
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGACSGNPGPGGWG +L Y +K +SGGE TTNNRMEL I AL ALK
Sbjct: 1 MKTVTIYTDGACSGNPGPGGWGAILMYGTFKKELSGGEGHTTNNRMELTGVITALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LY+DS YV + K W+ GW +DKK N DLW + + +H V+L+W
Sbjct: 61 PCVVELYSDSKYVIDALQKGWAKSWKAKGWVKADKKPALNPDLWERLLSLCERHTVNLHW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGHA N N + D +A + +K
Sbjct: 121 VKGHASNPYNNRCDELAVAESKKYK 145
>gi|300112989|ref|YP_003759564.1| ribonuclease H [Nitrosococcus watsonii C-113]
gi|299538926|gb|ADJ27243.1| Ribonuclease H [Nitrosococcus watsonii C-113]
Length = 147
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 76/139 (54%), Positives = 107/139 (76%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPGPGGWG LLRY+G EK ++G +TTNNRMELMAAI+AL LK PC+
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLRYQGHEKTLAGAAPKTTNNRMELMAAIRALETLKRPCR 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS Y+ +G + W+ W++ GWKT++++ VKNIDLW + +A+AQH+++ +W++GH
Sbjct: 65 VHLTTDSQYLRQGITCWLTNWKRRGWKTANRQPVKNIDLWQRLDQAAAQHRIEWFWVRGH 124
Query: 129 AGNQENEKVDRIARNAAVS 147
G+ ENE+ D +AR A ++
Sbjct: 125 EGHSENERADALARGAIIN 143
>gi|91788150|ref|YP_549102.1| ribonuclease H [Polaromonas sp. JS666]
gi|123059899|sp|Q12B88|RNH_POLSJ RecName: Full=Ribonuclease H; Short=RNase H
gi|91697375|gb|ABE44204.1| RNase HI [Polaromonas sp. JS666]
Length = 159
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 92/140 (65%), Gaps = 2/140 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGGWGVLL EK + GGE TTNNRME+ A I+AL ALK PC+
Sbjct: 14 VVIYTDGACKGNPGPGGWGVLLAMGDTEKELFGGEPVTTNNRMEMTAVIEALAALKRPCR 73
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLYWIK 126
V LY DS YV KG ++WI W+ GW+T+ K VKN+DLW + S+ HK+D W+K
Sbjct: 74 VTLYLDSEYVRKGITEWIHGWKARGWRTAAKAPVKNVDLWQRLDALVTSSGHKIDWRWVK 133
Query: 127 GHAGNQENEKVDRIARNAAV 146
GH G+ NE+ D +A
Sbjct: 134 GHNGDPGNERADALANQGVE 153
>gi|296133241|ref|YP_003640488.1| Ribonuclease H [Thermincola sp. JR]
gi|296031819|gb|ADG82587.1| Ribonuclease H [Thermincola potens JR]
Length = 146
Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPGPGGWG +L Y K K ISG E TTNNRMEL AAIKAL ALK
Sbjct: 1 MKKVTIYTDGACSGNPGPGGWGAILMYGEKSKEISGYEPSTTNNRMELTAAIKALRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS+Y+ F Q KWQQ GW S K+ V+N DLW + ++ + HKV
Sbjct: 61 PCEVDLYSDSAYLVNAFQQDWLGKWQQKGWVNSKKEPVENQDLWQELLKLTKTHKVKWIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGHA N+ N + D +AR + +N
Sbjct: 121 VKGHADNEFNNRCDELARGEITAHQN 146
>gi|320538890|ref|ZP_08038566.1| putative ribonuclease HI, degrades RNA of DNA-RNA hybrids [Serratia
symbiotica str. Tucson]
gi|320031050|gb|EFW13053.1| putative ribonuclease HI, degrades RNA of DNA-RNA hybrids [Serratia
symbiotica str. Tucson]
Length = 155
Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 102/140 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL AL
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSMGYHLTTNNRMELMAAIVALEALTA 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L TDS YV +G +QWI W++ GWKT++K+ VKN+DLW + A +H + W+
Sbjct: 62 PCKVILSTDSQYVRQGITQWILNWKKRGWKTANKQPVKNVDLWQRLDLAIQRHTITWEWV 121
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGHAG+ +NE+ D +AR+ A
Sbjct: 122 KGHAGHVDNERCDVLARDEA 141
>gi|329894915|ref|ZP_08270714.1| Ribonuclease HI [gamma proteobacterium IMCC3088]
gi|328922644|gb|EGG29979.1| Ribonuclease HI [gamma proteobacterium IMCC3088]
Length = 148
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 95/143 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R V YTDGAC GNPG GGWG LR EK + GGE +TTNNRMEL A IKAL LK P
Sbjct: 3 RNVVIYTDGACKGNPGIGGWGAWLRAGEHEKEMCGGEHDTTNNRMELTATIKALETLKVP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V +YTDS YV G ++W+ W++N W+T+ K+ VKN DLW A QH+++ +W+K
Sbjct: 63 CTVDIYTDSVYVRDGVTKWMSNWKRNNWRTASKQLVKNKDLWQALDAAIGQHEINWHWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GH+GNQ NE+ D++A +
Sbjct: 123 GHSGNQGNERADQLANQGIEQLR 145
>gi|325920992|ref|ZP_08182878.1| RNase HI [Xanthomonas gardneri ATCC 19865]
gi|325548526|gb|EGD19494.1| RNase HI [Xanthomonas gardneri ATCC 19865]
Length = 150
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEATSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + GWKT+ VKN +LW + A+ +H +D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMSGWVRRGWKTAGGDPVKNRELWERLHAATQRHSIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ + +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRGSL 147
>gi|320160986|ref|YP_004174210.1| ribonuclease H [Anaerolinea thermophila UNI-1]
gi|319994839|dbj|BAJ63610.1| ribonuclease H [Anaerolinea thermophila UNI-1]
Length = 173
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M +++V +TDGAC GNPGPGG+ +L Y +K I+GG + TTNNRMELMAAI AL
Sbjct: 1 MKPTVMKKVIIFTDGACIGNPGPGGYAAILIYGKNKKEITGGFRYTTNNRMELMAAIAAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHK 119
ALK PC+V+LY+DS+Y+ + FS + + +KK V+N+DLW +F++ H+
Sbjct: 61 EALKEPCEVILYSDSNYLVENFSSGLVFRWREKGWKRNKKEPVENVDLWTRFIKNCETHR 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ GH G +ENE+ D +AR A
Sbjct: 121 VSLEWVMGHQGIRENERCDFLARQTAK 147
>gi|332654829|ref|ZP_08420571.1| ribonuclease HI [Ruminococcaceae bacterium D16]
gi|332516172|gb|EGJ45780.1| ribonuclease HI [Ruminococcaceae bacterium D16]
Length = 145
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGACSGNPGPGGWG +L Y +K +SGGE +TTNNRMEL I AL ALK
Sbjct: 1 MKTVTIYTDGACSGNPGPGGWGAILMYGPHKKEMSGGEPQTTNNRMELTGVISALRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LY+DS YV + K + DKK N DLW + +E H V+L+W
Sbjct: 61 PCVVELYSDSKYVIDALEKGWAKGWRARGWVKGDKKPALNPDLWQQLLELCEYHTVNLHW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGHA N N + D +A + FK
Sbjct: 121 VKGHASNPYNNRCDELAVAQSQKFK 145
>gi|296273888|ref|YP_003656519.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
gi|296098062|gb|ADG94012.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
Length = 148
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 105/146 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++++ Y+DG+ GNPGPGG+G +L + GK+K +SGGE TTNNRMEL I+ L ALK
Sbjct: 1 MKKINLYSDGSSLGNPGPGGYGTILEFNGKQKELSGGEDNTTNNRMELKGVIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V + +DS+YV KG ++W+ W +N WK+S KK VKN DLW ++VE S HK+ W+
Sbjct: 61 PCDVHITSDSTYVVKGINEWLSSWIKNNWKSSTKKPVKNDDLWKEYVEVSKNHKILASWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG++ENE+ D +A+ A + K K
Sbjct: 121 KGHAGHEENERCDILAKEFAQNIKEK 146
>gi|21241846|ref|NP_641428.1| ribonuclease H [Xanthomonas axonopodis pv. citri str. 306]
gi|25009128|sp|Q8PNH8|RNH_XANAC RecName: Full=Ribonuclease H; Short=RNase H
gi|21107227|gb|AAM35964.1| ribonuclease H [Xanthomonas axonopodis pv. citri str. 306]
Length = 150
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGCDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ + +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRGGL 147
>gi|89070113|ref|ZP_01157443.1| ribonuclease HI [Oceanicola granulosus HTCC2516]
gi|89044334|gb|EAR50477.1| ribonuclease HI [Oceanicola granulosus HTCC2516]
Length = 150
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWG +L + KE+ +SGGE TTNNRMELMAAI AL
Sbjct: 1 MAELFAYTDGACSGNPGPGGWGAVLIAREGGAVLKERELSGGEARTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL+ P ++ + TDS+YV G + WI W++ GWKT+ KK VKN DLW + EA+A+H+V
Sbjct: 61 EALERPSRLTMVTDSNYVKDGITSWIAGWKRRGWKTAAKKPVKNEDLWRRLDEAAARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKR 150
>gi|294627920|ref|ZP_06706499.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292597834|gb|EFF41992.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 150
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ + +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRGGL 147
>gi|107101247|ref|ZP_01365165.1| hypothetical protein PaerPA_01002280 [Pseudomonas aeruginosa PACS2]
Length = 141
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 73/138 (52%), Positives = 95/138 (68%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDGAC GNPG GGWG LL YKG E+ + GGE +TTNNRMELMAAI+AL ALK C +
Sbjct: 2 IYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRSCPIR 61
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L TDS YV +G ++W+ W++ GWKT+ K+ VKN DLW E A+H+V+ W++GH G
Sbjct: 62 LITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVRGHTG 121
Query: 131 NQENEKVDRIARNAAVSF 148
+ NE+ D++A
Sbjct: 122 DPGNERADQLANRGVAEL 139
>gi|119503278|ref|ZP_01625362.1| ribonuclease H [marine gamma proteobacterium HTCC2080]
gi|119460924|gb|EAW42015.1| ribonuclease H [marine gamma proteobacterium HTCC2080]
Length = 145
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 100/145 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V A+TDGAC GNPGPGGWGVLLR + + I GG+ TTNNRMEL AAI+AL ALK
Sbjct: 1 MKVVEAFTDGACKGNPGPGGWGVLLRMDNQSREIFGGDGATTNNRMELTAAIEALAALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L TDS+YV G ++W++ W++NGW+T+ KK VKN DLW A+H+V+ +W+
Sbjct: 61 ACTVELTTDSTYVKDGVTRWMENWERNGWRTAAKKPVKNQDLWQALKAQVARHEVNWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ ENE D +A +
Sbjct: 121 KGHSGHPENELADMLANKGIAELQR 145
>gi|258546178|ref|ZP_05706412.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
gi|258518603|gb|EEV87462.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
Length = 148
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 98/143 (68%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPG GGWGVL+ Y K ++G E TTNNRMEL AAI+AL A+K C
Sbjct: 5 LLIYTDGACKGNPGIGGWGVLMCYGEHRKTLNGAEAMTTNNRMELTAAIEALRAVKRACP 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
++L TDSSYV G +QW+ W++NGWKT+DKK VKN+DLW AQH+++ WIKGH
Sbjct: 65 IVLTTDSSYVKNGITQWLAGWKRNGWKTADKKAVKNVDLWQALDALVAQHQIEWQWIKGH 124
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
+G+ NE D++A A + K
Sbjct: 125 SGHPGNEMADQLANEAIAELRAK 147
>gi|55981525|ref|YP_144822.1| ribonuclease H [Thermus thermophilus HB8]
gi|401007|sp|P29253|RNH_THET8 RecName: Full=Ribonuclease H; Short=RNase H
gi|538673|pir||A42673 ribonuclease H (EC 3.1.26.4) - Thermus aquaticus
gi|157833693|pdb|1RIL|A Chain A, Crystal Structure Of Ribonuclease H From Thermus
Thermophilus Hb8 Refined At 2.8 Angstroms Resolution
gi|55772938|dbj|BAD71379.1| ribonuclease H (RNase H) [Thermus thermophilus HB8]
Length = 166
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ + V +TDGAC GNPGPGGW LLR+ EK++SGGE TTNNRMEL AAI+ L
Sbjct: 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
ALK PC+V LYTDS Y+ K F++ + W++ GW+T++ K VKN DLW + A A H+
Sbjct: 61 KALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V +++KGH G+ ENE+VDR AR A S
Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQAQSQAK 151
>gi|18655792|pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655793|pdb|1JL2|B Chain B, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655794|pdb|1JL2|C Chain C, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655795|pdb|1JL2|D Chain D, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
Length = 156
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+ GNPGPGG+G +LRY+G+EK S G TTNNRMEL AAI+ L ALK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P +V LYTDS Y+ K F++ + W++ GW+T++ K VKN DLW + A A H+V ++
Sbjct: 62 PAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHF 121
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHAG+ ENE+ D +AR AA++
Sbjct: 122 VKGHAGHPENERADELARAAAMN 144
>gi|126728520|ref|ZP_01744336.1| ribonuclease HI [Sagittula stellata E-37]
gi|126711485|gb|EBA10535.1| ribonuclease HI [Sagittula stellata E-37]
Length = 150
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 79/150 (52%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWGVLLR K++ + GGE+ TTNN+MELMAAI AL
Sbjct: 1 MPDLYAYTDGACSGNPGPGGWGVLLRAMEGDEVVKQRELKGGERVTTNNQMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P ++ + TDS YV G + WI W++NGWKT+ KK VKN++LW + A A+H V
Sbjct: 61 ESLTKPSRITVITDSQYVKNGVTGWIFGWKKNGWKTAAKKPVKNVELWQRLDAAQARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK+
Sbjct: 121 VWEWVKGHAGHPENERADELARAGMAPFKS 150
>gi|222056552|ref|YP_002538914.1| Ribonuclease H [Geobacter sp. FRC-32]
gi|221565841|gb|ACM21813.1| Ribonuclease H [Geobacter sp. FRC-32]
Length = 146
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 95/143 (66%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V + DGACSGNPG GGWG +LRY K +SG + TTNNRME+ AAI+AL +LK PC
Sbjct: 2 KVEIFCDGACSGNPGVGGWGCILRYGDNVKEMSGADGNTTNNRMEMTAAIEALASLKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V L TDS Y+ KG ++WI W + GW S K+ V N +LW + +E S H + W++G
Sbjct: 62 EVHLTTDSQYLVKGMTEWIGGWVRKGWVNSKKEPVLNRELWERLMELSRLHTIHWLWVRG 121
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H G+ ENE+ D +AR A +F+
Sbjct: 122 HNGHPENERCDELARAAIETFRR 144
>gi|163752244|ref|ZP_02159445.1| ribonuclease HI [Shewanella benthica KT99]
gi|161327874|gb|EDP99053.1| ribonuclease HI [Shewanella benthica KT99]
Length = 154
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 106/142 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ + +TDG+C GNPGPGG+GV+++YK + K +S G TTNNRMEL+A I AL ALK
Sbjct: 2 LKPLSIFTDGSCLGNPGPGGYGVVMQYKSRIKELSDGFLLTTNNRMELLAPIIALEALKV 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS Y+ +G +QWI W++ GW+T+ K+ VKN+DLW + A+A H+++ W+
Sbjct: 62 PCKIVLTSDSQYMRQGITQWIHAWKKKGWQTAAKQPVKNVDLWKRLDAATASHEIEWRWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 122 KGHAGHVENERCDTLARVAAEA 143
>gi|294141156|ref|YP_003557134.1| ribonuclease HI [Shewanella violacea DSS12]
gi|293327625|dbj|BAJ02356.1| ribonuclease HI [Shewanella violacea DSS12]
Length = 154
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 105/142 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ + +TDG+C GNPGPGG+GV+++YK + K +S G TTNNRMEL+A I AL ALK
Sbjct: 2 LKPLSIFTDGSCLGNPGPGGYGVVMKYKSQVKELSDGFLLTTNNRMELLAPIIALEALKV 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS Y+ +G +QWI W++ GW T+ K+ VKN+DLW + A+A H+++ W+
Sbjct: 62 PCKIVLTSDSQYMRQGITQWIHGWKKKGWLTAAKQPVKNVDLWKRLDAATASHEIEWLWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +AR AA +
Sbjct: 122 KGHAGHVENERCDTLARVAAEA 143
>gi|91775832|ref|YP_545588.1| RNase HI [Methylobacillus flagellatus KT]
gi|123380476|sp|Q1H190|RNH_METFK RecName: Full=Ribonuclease H; Short=RNase H
gi|91709819|gb|ABE49747.1| RNase HI [Methylobacillus flagellatus KT]
Length = 151
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/139 (52%), Positives = 89/139 (64%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y DGAC GNPGPGGWG L + G EK + GGE TTNNRMEL A I+AL ALK C
Sbjct: 6 IEIYADGACKGNPGPGGWGAWLSFAGHEKELWGGELVTTNNRMELTAVIRALEALKRQCS 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV KG ++W+ W+ W TSD+K VKN+DLW QH+V+ W+KGH
Sbjct: 66 VRIYTDSVYVQKGITEWVHSWKARNWLTSDRKPVKNVDLWKALDSLVQQHQVEWVWVKGH 125
Query: 129 AGNQENEKVDRIARNAAVS 147
AGN NE+ D +A
Sbjct: 126 AGNVGNERADALANKGVDQ 144
>gi|85860563|ref|YP_462765.1| ribonuclease H [Syntrophus aciditrophicus SB]
gi|123517534|sp|Q2LWY9|RNH_SYNAS RecName: Full=Ribonuclease H; Short=RNase H
gi|85723654|gb|ABC78597.1| ribonuclease H [Syntrophus aciditrophicus SB]
Length = 173
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/140 (47%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V YTDGAC GNPGPGG+GV+L Y K +SGG + TTNNRME++AAIK L ALK
Sbjct: 22 KQVIIYTDGACLGNPGPGGYGVVLLYGEHRKELSGGYRLTTNNRMEILAAIKGLEALKSA 81
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DS Y+ ++ ++W+ NGWK + ++ N DLW + +E ++H + W+
Sbjct: 82 CSVTLYSDSQYLVNAINKGWAQRWKANGWKRNAREKALNPDLWERLLELCSRHDITFVWV 141
Query: 126 KGHAGNQENEKVDRIARNAA 145
+GHA N+ENE+ D +++ AA
Sbjct: 142 RGHANNKENERCDVLSKEAA 161
>gi|126658563|ref|ZP_01729710.1| ribonuclease H [Cyanothece sp. CCY0110]
gi|126620150|gb|EAZ90872.1| ribonuclease H [Cyanothece sp. CCY0110]
Length = 154
Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats.
Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPG GG+G++L Y K +SGG + TTNNRME+MAAI L ALK
Sbjct: 1 MKKVQIYTDGACSGNPGKGGYGIILVYNEHRKELSGGYRLTTNNRMEMMAAIIGLEALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYW 124
PC+V LYTDS Y+ ++ K Q + K + ++ +H+V W
Sbjct: 61 PCEVTLYTDSRYLVDAITKGWAKKWQANGWKRNNKEAAKNPDLWQKLLDLCKKHEVKFVW 120
Query: 125 IKGHAGNQENEKVDRIARNA 144
+KGHAG+ ENE+ DR+A A
Sbjct: 121 VKGHAGHPENEQCDRLAVTA 140
>gi|145589207|ref|YP_001155804.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|187611392|sp|A4SXM6|RNH_POLSQ RecName: Full=Ribonuclease H; Short=RNase H
gi|145047613|gb|ABP34240.1| RNase HI [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 154
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 88/141 (62%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTDGAC GNPGPGGWG +LR EK I GGEK TTNNRME+ A I AL ALK
Sbjct: 12 HIIIYTDGACKGNPGPGGWGAVLRSGSHEKHIHGGEKLTTNNRMEICAVIFALKALKQRS 71
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS YV KG ++W++ W++ GWKT+ K VKN DLW + H + +W++G
Sbjct: 72 SVELWTDSQYVQKGVTEWLEGWKKRGWKTASKDPVKNADLWQELDTLLPDHDISWHWVRG 131
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H G+ NE D +A F
Sbjct: 132 HNGHPGNELADALANKGVEEF 152
>gi|95928554|ref|ZP_01311301.1| ribonuclease H [Desulfuromonas acetoxidans DSM 684]
gi|95135344|gb|EAT16996.1| ribonuclease H [Desulfuromonas acetoxidans DSM 684]
Length = 147
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 97/146 (66%), Gaps = 2/146 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K + V Y+DGAC GNPGPGG+G LLR K +SG E +TTNNRMEL+ AI L
Sbjct: 1 MSQK--QHVEIYSDGACRGNPGPGGYGTLLRCGSHIKELSGYEAQTTNNRMELLGAIAGL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC V L TDS YV+KG +QW+ W++ GWK S KK V N DLW + A+ H+V
Sbjct: 59 EALKKPCIVTLTTDSQYVYKGMTQWLSGWKKKGWKNSQKKDVLNRDLWERLERAAQDHEV 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG++ENE+ D +AR A
Sbjct: 119 TWQWVKGHAGHEENERCDELARTAID 144
>gi|315505848|ref|YP_004084735.1| ribonuclease h [Micromonospora sp. L5]
gi|315412467|gb|ADU10584.1| Ribonuclease H [Micromonospora sp. L5]
Length = 187
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKY 65
R V +TDGACSGNPGPGGWG +LR+ G E+ + GGE TTNNRMEL AAI+AL +L
Sbjct: 8 RVVEIWTDGACSGNPGPGGWGAVLRWGGHERELCGGEATPTTNNRMELTAAIRALESLTR 67
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P V L+TDS+YV G + W+ W++NGW T+ K+ VKN DLW A A+H V W+
Sbjct: 68 PVTVRLHTDSTYVRNGITGWLNAWKRNGWLTAAKQPVKNADLWQALEAACARHDVTWLWV 127
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ ENE+ D +A ++
Sbjct: 128 KGHNGHPENERADALANRGMTEARS 152
>gi|581811|emb|CAA43026.1| ribonuclease h [Thermus thermophilus]
Length = 166
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ + V +TDGAC GNPGPGGW LLR+ EK++SGGE TTNNRMEL AAI+ L
Sbjct: 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEAWTTNNRMELKAAIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
ALK PC+V LYTDS Y+ K F++ + W++ GW+T++ K VKN DLW + A A H+
Sbjct: 61 KALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V +++KGH G+ ENE+VDR AR A S
Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQAQSQAK 151
>gi|307247426|ref|ZP_07529473.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306856123|gb|EFM88279.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 138
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 97/138 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDG+C GNPG GG G++LRY G EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKLVEIFTDGSCLGNPGKGGIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L +DS Y+ G ++WI W++N WKT++ K VKN +LW+ + +HK++ W+
Sbjct: 61 PCQVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNKELWIALDQEIQRHKIEWTWV 120
Query: 126 KGHAGNQENEKVDRIARN 143
KGH+G++ENE D +A+
Sbjct: 121 KGHSGHRENEICDELAKA 138
>gi|54294269|ref|YP_126684.1| hypothetical protein lpl1334 [Legionella pneumophila str. Lens]
gi|81822395|sp|Q5WWW5|RNH_LEGPL RecName: Full=Ribonuclease H; Short=RNase H
gi|53754101|emb|CAH15574.1| hypothetical protein lpl1334 [Legionella pneumophila str. Lens]
Length = 143
Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 102/141 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGVLLRY G+EK + GGE +TTNNRMELMAAIK L ALK PC
Sbjct: 2 KVEIYTDGACKGNPGPGGWGVLLRYNGREKTLHGGEPQTTNNRMELMAAIKGLEALKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V LYTDS Y+ +G +WIK W++NGW+ S K+ VKN +LW ++ H ++ +W+KG
Sbjct: 62 EVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELWKSLDNLASIHNINWHWVKG 121
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ EN+ VD +A
Sbjct: 122 HSGHLENDLVDALANLGIEEL 142
>gi|307722019|ref|YP_003893159.1| RNase HI [Sulfurimonas autotrophica DSM 16294]
gi|306980112|gb|ADN10147.1| RNase HI [Sulfurimonas autotrophica DSM 16294]
Length = 146
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+ GNPGPGG+GV+LRY EK +SG E TTNNRMEL AI+ L ALK
Sbjct: 1 MKKITLFSDGSALGNPGPGGYGVILRYGDSEKELSGSELHTTNNRMELKGAIEGLRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V + +DSSYV KG ++W+K W D K VKN DLW +++E + HK+ W+
Sbjct: 61 PCEVDIISDSSYVVKGINEWLKNWI-----KRDFKKVKNPDLWKEYIEVAKPHKIHAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH G++ENE+ D +A+ AA K
Sbjct: 116 RGHDGHEENERCDILAKEAAQKAK 139
>gi|317133220|ref|YP_004092534.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
gi|315471199|gb|ADU27803.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
Length = 157
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ H + V ++DGAC GNPGPGG+GV+LR+ G EK +S G ETTNNRMEL AI L
Sbjct: 1 MEQTH-KHVEIFSDGACRGNPGPGGYGVILRFGGHEKELSEGFAETTNNRMELSGAIAGL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ LK PC V LY+DS YV G + KKW+ NGW+ SDK N DLW K +E H
Sbjct: 60 SCLKEPCDVTLYSDSQYVVNGVEKGWAKKWRANGWRKSDKSPALNADLWEKLLELLELHN 119
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + W+KGHAG+ ENE+ D +A AA+ F+
Sbjct: 120 VRIVWVKGHAGHPENERCDALAVEAALRFQ 149
>gi|302867749|ref|YP_003836386.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029]
gi|302570608|gb|ADL46810.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029]
Length = 187
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKY 65
R V +TDGACSGNPGPGGWG +LR+ G E+ + GGE TTNNRMEL AAI+AL +L
Sbjct: 8 RVVEIWTDGACSGNPGPGGWGAVLRWGGHERELCGGEATPTTNNRMELTAAIRALESLTR 67
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P V L+TDS+YV G + W+ W++NGW T+ K+ VKN DLW A A+H V W+
Sbjct: 68 PVTVRLHTDSTYVRNGITGWLNAWKRNGWLTAAKQPVKNADLWQALEAACARHDVTWLWV 127
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ ENE+ D +A ++
Sbjct: 128 KGHNGHPENERADALANRGMTEARS 152
>gi|90414054|ref|ZP_01222037.1| putative ribonuclease HI [Photobacterium profundum 3TCK]
gi|90324849|gb|EAS41377.1| putative ribonuclease HI [Photobacterium profundum 3TCK]
Length = 156
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 101/142 (71%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDG+C GNPGPGG+G +LRYK EK +S G TTNNRMEL+AAI L+ LK
Sbjct: 3 KQVEVFTDGSCLGNPGPGGYGTVLRYKQHEKELSEGFFMTTNNRMELLAAIVGLSNLKEA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWI 125
C V L TDS YV +G +QWI W++ GWKT+DK+ VKN DLW + + +H V+ +W+
Sbjct: 63 CHVELTTDSQYVRQGITQWIHNWKKRGWKTADKRPVKNADLWQRLDAETQRHIVVNWHWV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG+ ENE+ D +ARNAA
Sbjct: 123 KGHAGHIENERCDVLARNAAEE 144
>gi|78046645|ref|YP_362820.1| ribonuclease H [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|123771463|sp|Q3BWP3|RNH_XANC5 RecName: Full=Ribonuclease H; Short=RNase H
gi|78035075|emb|CAJ22720.1| ribonuclease H [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 150
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 106/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKFIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ ++ +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRDGL 147
>gi|89052993|ref|YP_508444.1| ribonuclease H [Jannaschia sp. CCS1]
gi|123094401|sp|Q28V43|RNH_JANSC RecName: Full=Ribonuclease H; Short=RNase H
gi|88862542|gb|ABD53419.1| ribonuclease H [Jannaschia sp. CCS1]
Length = 157
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG L+R K KE+ + GGE +TTNNRMEL+AAI AL
Sbjct: 1 MPDLVAYTDGACSGNPGPGGWGALMRAKDGDTILKERELKGGEADTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P + + TDS+YV G + W+ W++NGWKTS +K VKN+DLW + EA ++H V
Sbjct: 61 EALDRPSTLTIITDSAYVKNGITGWMHGWKRNGWKTSTRKPVKNVDLWQRLDEAQSRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
WIKGHAG++ NEK D +AR FK
Sbjct: 121 TWEWIKGHAGHEGNEKADELARAGMAPFK 149
>gi|330468164|ref|YP_004405907.1| ribonuclease h [Verrucosispora maris AB-18-032]
gi|328811135|gb|AEB45307.1| ribonuclease h [Verrucosispora maris AB-18-032]
Length = 155
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKY 65
R V +TDGACSGNPGPGGWG +LRY E+ I GGE TTNNRMEL AAIKAL +L
Sbjct: 8 RVVQIWTDGACSGNPGPGGWGAVLRYGAHEREICGGEATPTTNNRMELTAAIKALESLTR 67
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P V L+TDS+YV G + W+ W++NGW T+ ++ VKN DLW + A A+H+V W+
Sbjct: 68 PVTVELHTDSTYVRNGITSWLASWKRNGWLTAARQPVKNADLWQQLEAACARHRVTWLWV 127
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ ENE+ D +A ++
Sbjct: 128 KGHNGHPENERADALANQGMTEARS 152
>gi|240851512|ref|ZP_04752263.1| ribonuclease HI [Actinobacillus minor 202]
gi|240310030|gb|EER48322.1| ribonuclease HI [Actinobacillus minor 202]
Length = 153
Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPG GG G+LLRY EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKQVEIFTDGSCLGNPGKGGIGILLRYNQHEKTVSQGYFQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L++DS Y+ G ++WI W++N WKT++ K VKN DLW+ +HK++ +W+
Sbjct: 61 PCQVHLHSDSQYMKDGITKWIFNWKRNNWKTANGKAVKNQDLWIALDMEIQRHKMEWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ENE D +A+ A +
Sbjct: 121 KGHAGHRENEICDELAKAGANN 142
>gi|293411968|ref|ZP_06654693.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469523|gb|EFF12012.1| conserved hypothetical protein [Escherichia coli B354]
Length = 197
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L+ V ++DG+C NPG PGG+G++L+Y+G+E+ S G TTNNRME+M A+ L L
Sbjct: 37 QLKTVKIFSDGSCLKNPGGPGGYGIVLQYRGEEREFSDGFHSTTNNRMEMMGALIGLERL 96
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KYPC V+L++DS Y+ G +QW+K W++NGW TSDKK VKN+DLW + EA+++H V
Sbjct: 97 KYPCNVILHSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKNVDLWKRLDEAASRHNVRWK 156
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG++ENE DR+A+ AA S
Sbjct: 157 WVKGHAGHRENEICDRLAKIAAFSA 181
>gi|163867882|ref|YP_001609086.1| ribonuclease H [Bartonella tribocorum CIP 105476]
gi|187611351|sp|A9IQR5|RNH_BART1 RecName: Full=Ribonuclease H; Short=RNase H
gi|161017533|emb|CAK01091.1| ribonuclease H [Bartonella tribocorum CIP 105476]
Length = 155
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 80/150 (53%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M S+ + V YTDGACSGNPG GGWG +LR+ G E+ + GG TTNN+MELMAAI AL
Sbjct: 1 MASQQ-KVVEIYTDGACSGNPGVGGWGAILRWNGHERELYGGNAHTTNNQMELMAAICAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC V LYTDS YV G S+WI+ W++N W+T+ K VKN++LW +A + H V
Sbjct: 60 KALKEPCLVDLYTDSVYVRNGISKWIEGWKKNNWRTASKSPVKNMELWQTLEDACSCHAV 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+W+KGHAG+ ENE+ D +AR A ++
Sbjct: 120 RWHWVKGHAGHPENERADALARKAIAQYRE 149
>gi|163795034|ref|ZP_02189003.1| RNase H [alpha proteobacterium BAL199]
gi|159179853|gb|EDP64380.1| RNase H [alpha proteobacterium BAL199]
Length = 154
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 99/143 (69%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG ++ ++G EK +SG E TTNNRMELMAAI +L AL
Sbjct: 9 RVAIFTDGACSGNPGPGGWGAVMCWRGTEKELSGAEPLTTNNRMELMAAIASLEALSRRV 68
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L TDS+YV G ++W+K W+ GWKT+DKK VKN DLW + A+ H V +W+KG
Sbjct: 69 PVDLTTDSTYVRDGITKWMKAWKARGWKTADKKPVKNQDLWERLDAAAKAHDVAWHWVKG 128
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG+ ENE+ D +AR A + +
Sbjct: 129 HAGHPENERADELARMAIAAMRE 151
>gi|225017067|ref|ZP_03706259.1| hypothetical protein CLOSTMETH_00992 [Clostridium methylpentosum
DSM 5476]
gi|224950234|gb|EEG31443.1| hypothetical protein CLOSTMETH_00992 [Clostridium methylpentosum
DSM 5476]
Length = 146
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPGPGGWG +LR+ EK +SGGE TTNNRMEL A I+AL+ALK
Sbjct: 1 MKKVDIYTDGACSGNPGPGGWGAILRFGPHEKELSGGEPNTTNNRMELTAVIQALSALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C++ +++DS Y+ Q KKW+ NGW + K N DLW K ++ +H+V +W
Sbjct: 61 SCEITIHSDSKYIIDAIQQGWAKKWRANGWMRNKKDKALNPDLWGKLLDLLEEHQVTFHW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGHAG+ ENE+ D++A + +
Sbjct: 121 VKGHAGHPENERCDQLAVAQSQKYAK 146
>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 497
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 41 QTITLYVDGACRGNPGLGGWGAYVITEQDEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 100
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 101 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 155
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 156 GHAGHAGNEMADQLANLGADKTAQEL 181
>gi|289664176|ref|ZP_06485757.1| ribonuclease H [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289668768|ref|ZP_06489843.1| ribonuclease H [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 150
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 103/145 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H +D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHSIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
+GH G+ +NE+VD +ARN A + ++
Sbjct: 121 RGHNGDPDNERVDVLARNQATAQRD 145
>gi|240948620|ref|ZP_04752993.1| ribonuclease H [Actinobacillus minor NM305]
gi|240297128|gb|EER47699.1| ribonuclease H [Actinobacillus minor NM305]
Length = 153
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 99/142 (69%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPG GG G+LLRY EK +S G +TTNNRMEL A I+AL LK
Sbjct: 1 MKQVEIFTDGSCLGNPGKGGIGILLRYNQHEKTVSQGYFQTTNNRMELRAVIEALAMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L++DS Y+ G ++WI W++N WKT++ K VKN DLW+ HK++ +W+
Sbjct: 61 PCQVHLHSDSQYMKDGITKWIFNWKRNNWKTANGKAVKNQDLWIALDMEIQHHKMEWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGHAG++ENE D +A+ A +
Sbjct: 121 KGHAGHRENEICDELAKAGANN 142
>gi|294666554|ref|ZP_06731795.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603698|gb|EFF47108.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 150
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAI AL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYHGREKELAGGEAVSTNNRMELMAAIMALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN +LW + A+ +H++D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNRELWERLHAATQRHRIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ +NE+VD +ARN A++ + +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQRGGL 147
>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
Length = 459
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGADKTAQEL 143
>gi|240850090|ref|YP_002971483.1| ribonuclease HI [Bartonella grahamii as4aup]
gi|240267213|gb|ACS50801.1| ribonuclease HI [Bartonella grahamii as4aup]
Length = 155
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 78/144 (54%), Positives = 102/144 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG +LR+ G E+ + GG+ TTNN+MELMAAI AL ALK P
Sbjct: 6 KVVEIYTDGACSGNPGIGGWGAILRWNGHERELYGGKVHTTNNQMELMAAICALKALKEP 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS YV G S+WI+ W++N W+T+ K VKN++LW +A + H V +W+K
Sbjct: 66 CLVDLYTDSVYVRNGISKWIEDWKKNNWRTASKNPVKNMELWQALEDACSCHTVRWHWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ ENE+ D +AR A ++
Sbjct: 126 GHAGHPENERADALARKAISQYRE 149
>gi|325134705|gb|EGC57344.1| ribonuclease HI [Neisseria meningitidis M13399]
gi|325205650|gb|ADZ01103.1| ribonuclease HI [Neisseria meningitidis M04-240196]
Length = 145
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTASKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A A F
Sbjct: 123 GHAGHAENERADDLANRGAAQF 144
>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
Length = 459
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCTGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGADKTAQEL 143
>gi|160943989|ref|ZP_02091219.1| hypothetical protein FAEPRAM212_01490 [Faecalibacterium prausnitzii
M21/2]
gi|158444665|gb|EDP21669.1| hypothetical protein FAEPRAM212_01490 [Faecalibacterium prausnitzii
M21/2]
Length = 176
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 96/145 (66%), Gaps = 5/145 (3%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKA 59
+++V YTDGACSGNPGPGGWG +LRY+ EK +SGG+ TTNNRMEL A I+A
Sbjct: 21 NPMKQVEVYTDGACSGNPGPGGWGAVLRYRFDGKVYEKELSGGDASTTNNRMELTAFIEA 80
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L LK PC+V L +DS YV G + K W++ GWK +D N DLW + +E A+H
Sbjct: 81 LRQLKEPCEVRLCSDSQYVINGLEKGWAKGWKRRGWKKADGSPALNPDLWAQALEQEARH 140
Query: 119 KVDLYWIKGHAGNQENEKVDRIARN 143
K+ W+KGHAG+ ENE+ D++A
Sbjct: 141 KITYVWVKGHAGHPENERCDQLAVA 165
>gi|86137261|ref|ZP_01055839.1| ribonuclease HI [Roseobacter sp. MED193]
gi|85826585|gb|EAQ46782.1| ribonuclease HI [Roseobacter sp. MED193]
Length = 155
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 102/150 (68%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWG LL+ K KEK + GGE TTNNRMEL+AAI AL
Sbjct: 1 MADLYAYTDGACSGNPGPGGWGALLQAKDGGSVIKEKELKGGEANTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P + + TDS+YV G + WI W++NGWK + KK VKN +LW + A ++H+V
Sbjct: 61 ESLDRPSALTVVTDSNYVKNGITGWIFGWKKNGWKNAAKKPVKNAELWQRLDAAQSRHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKK 150
>gi|313201260|ref|YP_004039918.1| ribonuclease h [Methylovorus sp. MP688]
gi|312440576|gb|ADQ84682.1| ribonuclease H [Methylovorus sp. MP688]
Length = 154
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 90/140 (64%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGAC GNPGPGGWG L G EK + GGE TTNNRMEL A I+AL ALK PC
Sbjct: 8 VVIYADGACKGNPGPGGWGAWLAMGGHEKEMCGGELLTTNNRMELTAVIRALQALKRPCL 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV KG ++W+ W+ W+TSDKK VKN DLW + + H ++ W+KGH
Sbjct: 68 VKIYTDSVYVQKGITEWMTGWKARNWRTSDKKPVKNEDLWRELDQTVQPHNIEWLWVKGH 127
Query: 129 AGNQENEKVDRIARNAAVSF 148
AGN NE+ D +A +
Sbjct: 128 AGNAGNERADALANQGVLQA 147
>gi|302383663|ref|YP_003819486.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
gi|302194291|gb|ADL01863.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
Length = 150
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 97/144 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDGAC GNPGPGGWG ++++ K K +SGGE TTNNRMEL AAI AL AL
Sbjct: 1 MSHVIIHTDGACKGNPGPGGWGAIIQFGEKAKEMSGGEPLTTNNRMELTAAIMALEALTR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK+ L+TDS YV G + WI W+ GWKT+DKK VKN DLW + A +H+V +W+
Sbjct: 61 PCKIDLHTDSKYVMDGITGWIHGWKARGWKTADKKPVKNDDLWKRLDVARTRHEVKWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ NE+ D++A +
Sbjct: 121 KGHAGHALNERADQLANRGIEEMR 144
>gi|77464447|ref|YP_353951.1| ribonuclease H [Rhodobacter sphaeroides 2.4.1]
gi|77388865|gb|ABA80050.1| ribonuclease H [Rhodobacter sphaeroides 2.4.1]
Length = 175
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 5/154 (3%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAI 57
+ + +++AYTDGACSGNPGPGGWGVL+ + KE+ + GGE TTNNRMELMAAI
Sbjct: 22 PRPMPDLYAYTDGACSGNPGPGGWGVLMLAREGEAVVKERTLQGGEVLTTNNRMELMAAI 81
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL AL P ++ + TDS+YV G + WI W++NGWKT+DKK VKN +LW + A +
Sbjct: 82 SALEALTRPTEITIVTDSAYVKNGVTTWIHGWKRNGWKTADKKPVKNAELWERLDAAQQR 141
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
HKV WIKGH+G+ ENE+ D +AR FK +
Sbjct: 142 HKVVWRWIKGHSGHAENERADELARAGMAPFKTR 175
>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 459
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQDEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGADKTAQEL 143
>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
Length = 497
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 41 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 100
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 101 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 155
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 156 GHAGHAGNEMADQLANLGADKTAQEL 181
>gi|308389747|gb|ADO32067.1| ribonuclease HI [Neisseria meningitidis alpha710]
gi|325130645|gb|EGC53386.1| ribonuclease HI [Neisseria meningitidis OX99.30304]
gi|325136720|gb|EGC59320.1| ribonuclease HI [Neisseria meningitidis M0579]
gi|325144825|gb|EGC67113.1| ribonuclease HI [Neisseria meningitidis M01-240013]
gi|325201711|gb|ADY97165.1| ribonuclease HI [Neisseria meningitidis M01-240149]
gi|325208545|gb|ADZ03997.1| ribonuclease HI [Neisseria meningitidis NZ-05/33]
Length = 145
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 96/142 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 KTVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDVLVGQHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A A F
Sbjct: 123 GHAGHAENERADDLANRGAAQF 144
>gi|332286829|ref|YP_004418740.1| ribonuclease H [Pusillimonas sp. T7-7]
gi|330430782|gb|AEC22116.1| ribonuclease H [Pusillimonas sp. T7-7]
Length = 154
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 98/147 (66%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ +V +TDGAC GNPG GGWG LLR EK + GGE TTNNRMELMA I+AL ALK
Sbjct: 2 NNDQVEIWTDGACKGNPGMGGWGALLRQGRHEKTLYGGEPGTTNNRMELMAVIQALKALK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V ++TDS YV KG S+W+ W++ GW+T+DKK VKN DLW + QH + W
Sbjct: 62 RPCQVTVHTDSQYVQKGMSEWLANWKRRGWRTADKKPVKNADLWQELDALVEQHTLIWRW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
++GHAG+ NE+ D++A + +
Sbjct: 122 VRGHAGDPGNERADQLANQGVEHARAQ 148
>gi|325914918|ref|ZP_08177250.1| RNase HI [Xanthomonas vesicatoria ATCC 35937]
gi|325538811|gb|EGD10475.1| RNase HI [Xanthomonas vesicatoria ATCC 35937]
Length = 150
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 105/144 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDG+C GNPGPGGW LLRY G+EK ++GGE +TNNRMELMAAIKAL L
Sbjct: 1 MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMAAIKALETLTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + GWKT+ VKN +LW + A+ +H +D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMSGWVRRGWKTAGGDPVKNRELWERLHAATQRHSIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH G+ +NE+VD +ARN A++ +
Sbjct: 121 KGHNGDPDNERVDVLARNQAIAQR 144
>gi|253999158|ref|YP_003051221.1| ribonuclease H [Methylovorus sp. SIP3-4]
gi|253985837|gb|ACT50694.1| ribonuclease H [Methylovorus sp. SIP3-4]
Length = 154
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 91/140 (65%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGAC GNPGPGGWG L G EK + GGE TTNNRMEL A I+AL ALK PC+
Sbjct: 8 VVIYADGACKGNPGPGGWGAWLAMGGHEKEMCGGELLTTNNRMELTAVIRALQALKRPCQ 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV KG ++W+ W+ W+TSDKK VKN DLW + + H ++ W+KGH
Sbjct: 68 VKIYTDSVYVQKGITEWMTGWKARNWRTSDKKPVKNEDLWRELDQTVQPHNIEWLWVKGH 127
Query: 129 AGNQENEKVDRIARNAAVSF 148
AGN NE+ D +A +
Sbjct: 128 AGNAGNERADALANQGVLQA 147
>gi|304393511|ref|ZP_07375439.1| ribonuclease HI [Ahrensia sp. R2A130]
gi|303294518|gb|EFL88890.1| ribonuclease HI [Ahrensia sp. R2A130]
Length = 147
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 79/146 (54%), Positives = 100/146 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + +TDGACSGNPGPGGWG +LR EK +SGGE +TTNN+MEL AAI+AL ALK
Sbjct: 1 MKHIEIWTDGACSGNPGPGGWGAILRSGKHEKELSGGEFQTTNNQMELSAAIEALNALKA 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LYTDS YV G WI W++NGWKT+ KK VKN +LW A ++H+V +W+
Sbjct: 61 ESHVDLYTDSKYVMDGMKGWIHGWKKNGWKTAAKKPVKNAELWQALDRAVSRHEVTWHWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG ENE+ D +AR +K K
Sbjct: 121 KGHAGQVENERADELARMGMEPYKLK 146
>gi|197118830|ref|YP_002139257.1| ribonuclease H [Geobacter bemidjiensis Bem]
gi|197088190|gb|ACH39461.1| ribonuclease HI [Geobacter bemidjiensis Bem]
Length = 148
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 96/142 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V + DGACSGNPG GG+G +LR K ISG E +TTNNRME+ AAI AL ALK PC
Sbjct: 2 QVEIFCDGACSGNPGVGGYGSILRCGETVKEISGAEGDTTNNRMEMSAAIAALDALKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V++ TDS Y+ KG ++W+ W + GW S K+ V N DLW + +E S H++ W++G
Sbjct: 62 QVVVTTDSQYLAKGMTEWLSGWVKRGWVNSKKEPVLNRDLWERLLELSRVHQIRWVWVRG 121
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H G+ ENE+ D +AR A S++
Sbjct: 122 HNGHVENERCDELARAAIDSYR 143
>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii AYE]
gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
AB0057]
gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii AYE]
gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
AB0057]
gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
1656-2]
gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
TCDC-AB0715]
Length = 459
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGADKTAQEL 143
>gi|15677468|ref|NP_274624.1| ribonuclease HI [Neisseria meningitidis MC58]
gi|21362892|sp|Q9JYE5|RNH_NEIMB RecName: Full=Ribonuclease HI; Short=RNase HI
gi|7226869|gb|AAF41970.1| ribonuclease HI [Neisseria meningitidis MC58]
gi|316983875|gb|EFV62855.1| RNase H family protein [Neisseria meningitidis H44/76]
gi|325140736|gb|EGC63250.1| ribonuclease HI [Neisseria meningitidis CU385]
gi|325199787|gb|ADY95242.1| ribonuclease HI [Neisseria meningitidis H44/76]
Length = 145
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTASKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A A F
Sbjct: 123 GHAGHAENERADDLANRGAAQF 144
>gi|90425551|ref|YP_533921.1| ribonuclease H [Rhodopseudomonas palustris BisB18]
gi|90107565|gb|ABD89602.1| RNase HI [Rhodopseudomonas palustris BisB18]
Length = 153
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 104/143 (72%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGACSGNPGPGGWG +L++ EK + GGE TTNNRMEL+AAI AL AL PC
Sbjct: 7 VRVHTDGACSGNPGPGGWGAILKFGEIEKQLKGGETHTTNNRMELLAAISALEALTKPCT 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV +G + WI W++NGWKT+DKK VKN+DLW + A QH + +W+KGH
Sbjct: 67 VDLYTDSQYVRQGITAWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKQHDLRWHWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
AG+ ENE+ D++AR+ + K K
Sbjct: 127 AGHDENERADQLARDGLIEHKLK 149
>gi|241913131|pdb|2ZQB|A Chain A, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
gi|241913132|pdb|2ZQB|B Chain B, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
gi|241913133|pdb|2ZQB|C Chain C, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
gi|241913134|pdb|2ZQB|D Chain D, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
Length = 158
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 107/147 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G++++YKG K +SGG TTNNRMEL+A I AL ALK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMKYKGHTKEMSGGFSLTTNNRMELLAPIVALEALKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCK++L +DS YV +G WI W++NGW TS+ VKN+DLW + +A+ H++D W+
Sbjct: 64 PCKIILTSDSQYVRQGIMTWIHGWKKNGWMTSNGTPVKNVDLWKRLDKAAQLHQIDWRWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ ++AR AA + +I
Sbjct: 124 KGHAGHAENERCHQLARAAAEANPTQI 150
>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii SDF]
gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii]
Length = 459
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AQLIVWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGADKTAQEL 143
>gi|225175099|ref|ZP_03729095.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
gi|225169275|gb|EEG78073.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
Length = 143
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/140 (52%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPGPGGWG +LRY EK ISGG+++TTN RMEL AAI AL LK
Sbjct: 1 MKDVIIYTDGACSGNPGPGGWGAVLRYGSHEKEISGGDEKTTNQRMELQAAISALELLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV L++DS+Y+ F Q WQ+NGW S K+ V N DLW + +E +H ++
Sbjct: 61 PCKVKLHSDSAYLVNAFKQRWFDKWQKNGWVNSKKEPVVNRDLWERLLELDRKHDIEWVK 120
Query: 125 IKGHAGNQENEKVDRIARNA 144
+KGHA ++ N + D++AR+A
Sbjct: 121 VKGHADDELNNRCDQLARDA 140
>gi|114563376|ref|YP_750889.1| ribonuclease H [Shewanella frigidimarina NCIMB 400]
gi|122299581|sp|Q081L4|RNH_SHEFN RecName: Full=Ribonuclease H; Short=RNase H
gi|18857899|dbj|BAB85475.1| ribonuclease HI [Shewanella sp. SIB1]
gi|114334669|gb|ABI72051.1| RNase HI [Shewanella frigidimarina NCIMB 400]
Length = 157
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 103/147 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++++ +TDG+C GNPGPGG+GV+++YK ++ I+ G TTNNRMEL+A I AL L
Sbjct: 4 LKQLYIFTDGSCLGNPGPGGYGVVMKYKHQQHEIADGFSLTTNNRMELLAPIIALETLYE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC ++L +DS Y+ +G WI W++ GW TS K+ VKN+DLW + S HK+D +W+
Sbjct: 64 PCNIILTSDSQYMRQGIMTWIHGWKKKGWITSTKQPVKNVDLWKRLDAVSQLHKIDWHWV 123
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ ENE+ D +AR AA + ++
Sbjct: 124 KGHAGHIENERCDVLARKAAEAKPQQV 150
>gi|134095497|ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans]
gi|187611376|sp|A4G7G3|RNH_HERAR RecName: Full=Ribonuclease H; Short=RNase H
gi|133739400|emb|CAL62450.1| Ribonuclease HI (RNase HI) [Herminiimonas arsenicoxydans]
Length = 146
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 94/141 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ ++ +TDGAC GNPG GGWG LL +EK + GGE TTNNRMEL A I+AL AL
Sbjct: 1 MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+++TDS YV KG S+WI W+ GWKT+ + VKN+DLW A A+H+++ W+
Sbjct: 61 PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAV 146
+GH G+ NE+ D +A
Sbjct: 121 RGHNGHVGNERADALANRGVE 141
>gi|256828077|ref|YP_003156805.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
gi|256577253|gb|ACU88389.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
Length = 158
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V YTDG+ GNPGPGGWG +L + +K +S G ETTNNRME+ + AL LK PC
Sbjct: 5 SVTIYTDGSSLGNPGPGGWGAVLIWADSKKELSRGYIETTNNRMEIRGVLHALEHLKRPC 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V +++DS YV S+ + TS KK VKN DLW + + +HKV +W+K
Sbjct: 65 TVHVHSDSRYVCDAISKKWIQSWLKNGWLTSAKKPVKNRDLWEQLLSLLQKHKVIFHWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
H G+ ENE+ D +A+NAA + + +I
Sbjct: 125 AHDGHPENERCDELAKNAAKAREREI 150
>gi|307610084|emb|CBW99625.1| hypothetical protein LPW_13931 [Legionella pneumophila 130b]
Length = 143
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 102/141 (72%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGVLLRY G+EK + GGE +TTNNRMELMAAIK L ALK PC
Sbjct: 2 KVEIYTDGACKGNPGPGGWGVLLRYNGREKTLHGGEAQTTNNRMELMAAIKGLEALKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V LYTDS Y+ +G +WIK W++NGW+ S K+ VKN +LW ++ H ++ +W+KG
Sbjct: 62 EVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELWKSLDNLASIHNINWHWVKG 121
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ EN+ VD +A
Sbjct: 122 HSGHLENDLVDALANLGIEEL 142
>gi|302036779|ref|YP_003797101.1| ribonuclease H [Candidatus Nitrospira defluvii]
gi|190343195|gb|ACE75583.1| ribonuclease H [Candidatus Nitrospira defluvii]
gi|300604843|emb|CBK41176.1| Ribonuclease H [Candidatus Nitrospira defluvii]
Length = 156
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 97/142 (68%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGACSGNPGPGGWG LLR E + GG+ TTNNRMEL+A I+AL +L P +
Sbjct: 2 IEIYTDGACSGNPGPGGWGALLRIDNAETEMCGGDPATTNNRMELLAVIEALQSLTQPVE 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS YV KG S+WI W++ GWKT+ K+ VKN DLW + ++ HK++ +W++GH
Sbjct: 62 ARVYTDSQYVQKGISEWIHSWKRRGWKTAGKEPVKNEDLWRRLDTLASGHKLEWHWVRGH 121
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
G+ ENE+VD +AR +
Sbjct: 122 NGHPENERVDALARAGLEQSRR 143
>gi|159042738|ref|YP_001531532.1| ribonuclease H [Dinoroseobacter shibae DFL 12]
gi|187611370|sp|A8LLC1|RNH_DINSH RecName: Full=Ribonuclease H; Short=RNase H
gi|157910498|gb|ABV91931.1| ribonuclease H [Dinoroseobacter shibae DFL 12]
Length = 157
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWG LL + KE+ + GGE ETTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGALLIARDGDTVVKERALKGGEAETTNNRMELLAAIHAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL+ P ++ + TDS+YV G + WI W++NGWKTS KK VKN DLW + A A+H+V
Sbjct: 61 EALERPARLTVVTDSAYVKGGVTGWIHGWKRNGWKTSTKKPVKNEDLWRRLDAAQARHEV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 QWEWVKGHAGHPENERADALAREGMAPFK 149
>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
Length = 448
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + +E I GGE ETTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACKGNPGLGGWGAYIITETEEHKIYGGELETTNNRMELTAAIEGVSFCPVD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWKKLDAVCANRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ NE D++A A +
Sbjct: 118 GHAGHPGNEMADQLANMGAEQTAKQ 142
>gi|256375797|ref|YP_003099457.1| ribonuclease H [Actinosynnema mirum DSM 43827]
gi|255920100|gb|ACU35611.1| Ribonuclease H [Actinosynnema mirum DSM 43827]
Length = 185
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/137 (55%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALKYPC 67
V YTDGAC NPGPGGWGVLLRY E+ + GGE TTNNRMEL A I+AL AL P
Sbjct: 6 VDIYTDGACRPNPGPGGWGVLLRYGAHERELCGGEAGVTTNNRMELTAPIRALDALTRPS 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+YV G +QWIK W+ GW T K+ VKN DLW + A+A+H+V+ W+KG
Sbjct: 66 VVRLHTDSTYVRNGITQWIKGWKAKGWLTKGKEPVKNADLWRELDRATARHRVEWRWVKG 125
Query: 128 HAGNQENEKVDRIARNA 144
HAG++ NE+ D++A
Sbjct: 126 HAGDEGNERADQLAERG 142
>gi|260428428|ref|ZP_05782407.1| ribonuclease HI [Citreicella sp. SE45]
gi|260422920|gb|EEX16171.1| ribonuclease HI [Citreicella sp. SE45]
Length = 153
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVL+R KE+ + GGE +TTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGVLMRAMNGEDIVKERELKGGEADTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L P + + TDS+YV G + WI W++NGW T+ KK VKN +LW + EA H V
Sbjct: 61 ESLTRPTTITVVTDSAYVKNGVTGWIHGWKRNGWNTAAKKPVKNAELWQRLDEAQRMHSV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWKWVKGHAGHPENERADELARAGMAPFK 149
>gi|294084677|ref|YP_003551435.1| ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664250|gb|ADE39351.1| ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
Length = 145
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 99/142 (69%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDG+C NPGPGGW +L ++G EK +SG +TTNNRMEL AAI+ L AL P
Sbjct: 4 SVTIHTDGSCLSNPGPGGWAAILNWRGTEKELSGSVADTTNNRMELQAAIEGLNALSRPM 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V L+TDS YV G + W+ +W+ NGW+T+ KK V N DLW + A+ +H++ +W+KG
Sbjct: 64 QVELHTDSKYVMNGVTDWMARWKANGWRTAAKKPVANQDLWEQLDAATQRHQITWHWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
HAGN+ NE+ D +AR+AA S K
Sbjct: 124 HAGNELNERCDVLARSAAESLK 145
>gi|269795771|ref|YP_003315226.1| RNase HI [Sanguibacter keddieii DSM 10542]
gi|269097956|gb|ACZ22392.1| RNase HI [Sanguibacter keddieii DSM 10542]
Length = 170
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPG GGWG LR G E+ + GGE TTNNRMEL A I+AL ALK PC
Sbjct: 27 VEIWTDGACKGNPGVGGWGAWLRAGGHERELFGGETVTTNNRMELTAVIEALRALKRPCV 86
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+ DS+YV G S+WI W++NGW+T DKK VKN+DLW E A+H + W+KGH
Sbjct: 87 VNLHVDSTYVMNGMSKWIAGWKRNGWRTGDKKPVKNVDLWQALDEQVARHTITWTWVKGH 146
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
+G+ NEK D +A + +
Sbjct: 147 SGDVGNEKADELANRGVAEVRAR 169
>gi|149201584|ref|ZP_01878558.1| ribonuclease H [Roseovarius sp. TM1035]
gi|149144632|gb|EDM32661.1| ribonuclease H [Roseovarius sp. TM1035]
Length = 155
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ + AYTDGACSGNPGPGGWGVL+R KE+ +SGGE +TTNNRMEL AAI AL
Sbjct: 1 MPALFAYTDGACSGNPGPGGWGVLMRAMDGDAILKERELSGGEADTTNNRMELWAAIAAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P + + TDS+YV G + W+ W++NGW+T+DKK VKN++LW + EA +H V
Sbjct: 61 EALSRPSTITIVTDSAYVKNGVTGWMHGWKRNGWRTADKKPVKNVELWQRLDEAQKRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR +K
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPYK 149
>gi|302878568|ref|YP_003847132.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
gi|302581357|gb|ADL55368.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
Length = 153
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S+ V +TDGAC GNPG GGWG LLR KG ++ + GGE TTNNRMELM AI AL
Sbjct: 1 MNSE---IVEIFTDGACKGNPGVGGWGALLRSKGVQRELFGGEAHTTNNRMELMGAISAL 57
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL C+V L+TDS YV +G + W+ W++ GWKTS ++ VKN DLW + QH++
Sbjct: 58 EALTRRCQVKLHTDSKYVLQGITTWLAGWKRAGWKTSSRQPVKNEDLWRRLDALVIQHEI 117
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W+KGH+G+ NE D +A + +
Sbjct: 118 EWVWVKGHSGHAGNEHADELANRGVAMIQEQ 148
>gi|319898533|ref|YP_004158626.1| ribonuclease H [Bartonella clarridgeiae 73]
gi|319402497|emb|CBI76040.1| ribonuclease H [Bartonella clarridgeiae 73]
Length = 155
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 100/144 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGACSGNPG GGWG +LR+ G E+ + GGE TTNN+MELMAAI+AL LK
Sbjct: 6 KVIEIYTDGACSGNPGLGGWGAILRWNGYERELYGGEVYTTNNQMELMAAIRALNVLKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS+YV G S W++ W++N W+T+ K VKN+ LW + ++H + +WIK
Sbjct: 66 CSVELYTDSAYVRNGISTWLEGWKKNNWRTASKNPVKNMKLWQALDDVCSRHDIKWHWIK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAITEYRE 149
>gi|217977442|ref|YP_002361589.1| ribonuclease H [Methylocella silvestris BL2]
gi|217502818|gb|ACK50227.1| ribonuclease H [Methylocella silvestris BL2]
Length = 153
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDGACSGNPGPGGWG ++ + K + GGE TTNNRMELMAAI AL AL
Sbjct: 2 PKPVVIFTDGACSGNPGPGGWGAVMTFGDHLKELCGGEAATTNNRMELMAAIMALEALTR 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L TDS+YV G + W+ W++NGW+T+DKK VKN+DLW + A+ H ++ W+
Sbjct: 62 PCAVQLVTDSNYVKGGVTTWLAGWKRNGWRTADKKPVKNVDLWQRLEAAAEAHAIEWRWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGHAG++ NE+ D +AR F
Sbjct: 122 KGHAGDELNERADALARLGMAPF 144
>gi|49474004|ref|YP_032046.1| ribonuclease HI [Bartonella quintana str. Toulouse]
gi|81827634|sp|Q6G0C8|RNH_BARQU RecName: Full=Ribonuclease H; Short=RNase H
gi|49239507|emb|CAF25862.1| Ribonuclease HI [Bartonella quintana str. Toulouse]
Length = 155
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 100/144 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG +LR+ G E+ + GE +TTNNRMELMAAI AL LK
Sbjct: 6 KVVEIYTDGACSGNPGVGGWGAILRWNGHERELYSGEVQTTNNRMELMAAICALKVLKEA 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS YV G S W+++W+ N W+T+ KKTVKNI+LW + + H + +W+K
Sbjct: 66 CSVDLYTDSVYVRNGISLWLERWKMNNWRTTSKKTVKNIELWKALEDVCSLHTIRWHWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAITEYRK 149
>gi|332703539|ref|ZP_08423627.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
gi|332553688|gb|EGJ50732.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
Length = 157
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDG+C GNPGPGGW +L K + GG K TTNNRMEL+A I+ALTALK+P
Sbjct: 5 NSVTIFTDGSCLGNPGPGGWCAILTEGEHSKELFGGYKLTTNNRMELLAVIEALTALKHP 64
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L+TDS YV + WQ+NGWK S+KK VKN DLW + + A H+V +W+
Sbjct: 65 CRVDLWTDSQYVRNAIEKRWIDSWQRNGWKNSEKKPVKNQDLWQRLLPLLATHQVRFHWV 124
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH+G++ENE+ D++AR+AA
Sbjct: 125 RGHSGHRENERCDQLARSAAQK 146
>gi|114799775|ref|YP_759672.1| ribonuclease H [Hyphomonas neptunium ATCC 15444]
gi|123323474|sp|Q0C3M1|RNH_HYPNA RecName: Full=Ribonuclease H; Short=RNase H
gi|114739949|gb|ABI78074.1| ribonuclease H [Hyphomonas neptunium ATCC 15444]
Length = 150
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 77/151 (50%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K + + +TDGACSGNPGPGGWG L+R+ G EK + GG+ TTNNRME+ A I+AL
Sbjct: 1 MTDKDM--IEIWTDGACSGNPGPGGWGALIRWNGHEKELYGGDPATTNNRMEMTAVIEAL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P K+ L DS+YV G ++WIK W++NGWKT+DKK VKN +LWM EA +H++
Sbjct: 59 NALNRPSKITLNVDSTYVKDGLTKWIKGWKRNGWKTADKKPVKNQELWMAMEEACKRHEI 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG++ NE+ D +AR + +
Sbjct: 119 TWVWVKGHAGDEGNERADGLARKGTDEVRGR 149
>gi|218768590|ref|YP_002343102.1| ribonuclease H [Neisseria meningitidis Z2491]
gi|304386963|ref|ZP_07369223.1| ribonuclease HI [Neisseria meningitidis ATCC 13091]
gi|21362891|sp|Q9JTD9|RNH_NEIMA RecName: Full=Ribonuclease HI; Short=RNase HI
gi|121052598|emb|CAM08938.1| ribonuclease HI [Neisseria meningitidis Z2491]
gi|304338999|gb|EFM05093.1| ribonuclease HI [Neisseria meningitidis ATCC 13091]
Length = 145
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A A F
Sbjct: 123 GHAGHAENERADDLANRGAAQF 144
>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
SK82]
gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
SK82]
gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
Length = 455
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + +E I GGE TTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYIITEQEEYKICGGETLTTNNRMELTAAIEGISFCPKD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K++++TDS+YV KG ++WI+ W+ + K VKN DLW K +++ WIK
Sbjct: 63 AKLVIWTDSNYVKKGITEWIQGWK-----KKNWKDVKNPDLWQKLDATCQGREIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ NE D++A A
Sbjct: 118 GHAGHAGNEMADQLANLGADQI 139
>gi|59801528|ref|YP_208240.1| ribonuclease H [Neisseria gonorrhoeae FA 1090]
gi|239999711|ref|ZP_04719635.1| ribonuclease H [Neisseria gonorrhoeae 35/02]
gi|240014889|ref|ZP_04721802.1| ribonuclease H [Neisseria gonorrhoeae DGI18]
gi|240017337|ref|ZP_04723877.1| ribonuclease H [Neisseria gonorrhoeae FA6140]
gi|240081478|ref|ZP_04726021.1| ribonuclease H [Neisseria gonorrhoeae FA19]
gi|240113759|ref|ZP_04728249.1| ribonuclease H [Neisseria gonorrhoeae MS11]
gi|240116494|ref|ZP_04730556.1| ribonuclease H [Neisseria gonorrhoeae PID18]
gi|240118709|ref|ZP_04732771.1| ribonuclease H [Neisseria gonorrhoeae PID1]
gi|240120955|ref|ZP_04733917.1| ribonuclease H [Neisseria gonorrhoeae PID24-1]
gi|240124255|ref|ZP_04737211.1| ribonuclease H [Neisseria gonorrhoeae PID332]
gi|240126465|ref|ZP_04739351.1| ribonuclease H [Neisseria gonorrhoeae SK-92-679]
gi|240128925|ref|ZP_04741586.1| ribonuclease H [Neisseria gonorrhoeae SK-93-1035]
gi|254494511|ref|ZP_05107682.1| ribonuclease HI [Neisseria gonorrhoeae 1291]
gi|260439755|ref|ZP_05793571.1| ribonuclease H [Neisseria gonorrhoeae DGI2]
gi|268595523|ref|ZP_06129690.1| ribonuclease H [Neisseria gonorrhoeae 35/02]
gi|268597579|ref|ZP_06131746.1| ribonuclease H [Neisseria gonorrhoeae FA19]
gi|268599830|ref|ZP_06133997.1| ribonuclease HI [Neisseria gonorrhoeae MS11]
gi|268602164|ref|ZP_06136331.1| ribonuclease HI [Neisseria gonorrhoeae PID18]
gi|268604424|ref|ZP_06138591.1| ribonuclease HI [Neisseria gonorrhoeae PID1]
gi|268682886|ref|ZP_06149748.1| ribonuclease HI [Neisseria gonorrhoeae PID332]
gi|268685050|ref|ZP_06151912.1| ribonuclease HI [Neisseria gonorrhoeae SK-92-679]
gi|268687311|ref|ZP_06154173.1| ribonuclease HI [Neisseria gonorrhoeae SK-93-1035]
gi|81311179|sp|Q5F7K9|RNH_NEIG1 RecName: Full=Ribonuclease H; Short=RNase H
gi|59718423|gb|AAW89828.1| ribonuclease H [Neisseria gonorrhoeae FA 1090]
gi|226513551|gb|EEH62896.1| ribonuclease HI [Neisseria gonorrhoeae 1291]
gi|268548912|gb|EEZ44330.1| ribonuclease H [Neisseria gonorrhoeae 35/02]
gi|268551367|gb|EEZ46386.1| ribonuclease H [Neisseria gonorrhoeae FA19]
gi|268583961|gb|EEZ48637.1| ribonuclease HI [Neisseria gonorrhoeae MS11]
gi|268586295|gb|EEZ50971.1| ribonuclease HI [Neisseria gonorrhoeae PID18]
gi|268588555|gb|EEZ53231.1| ribonuclease HI [Neisseria gonorrhoeae PID1]
gi|268623170|gb|EEZ55570.1| ribonuclease HI [Neisseria gonorrhoeae PID332]
gi|268625334|gb|EEZ57734.1| ribonuclease HI [Neisseria gonorrhoeae SK-92-679]
gi|268627595|gb|EEZ59995.1| ribonuclease HI [Neisseria gonorrhoeae SK-93-1035]
Length = 145
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 95/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +LK C
Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+KGH
Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWQELDALVGQHQVSWTWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 125 AGHAENERADDLANRGAAQF 144
>gi|89900257|ref|YP_522728.1| ribonuclease H [Rhodoferax ferrireducens T118]
gi|123091377|sp|Q21YF6|RNH_RHOFD RecName: Full=Ribonuclease H; Short=RNase H
gi|89344994|gb|ABD69197.1| ribonuclease H [Rhodoferax ferrireducens T118]
Length = 149
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/143 (48%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V YTDGAC GNPGPGGWG L+ +K + GGE TTNNRME+ A I+AL ALK
Sbjct: 1 MNAVEIYTDGACKGNPGPGGWGAFLKSADSQKELFGGELGTTNNRMEMTAVIEALAALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLY 123
PC+V L+ DS YV KG ++W+ W+ GWKT+ K+ VKN+DLW + E +++ H++D
Sbjct: 61 PCQVTLHVDSQYVLKGMTEWLAGWKARGWKTAAKQPVKNVDLWQRLDELVSTSGHRIDWR 120
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W++GH G+ NE D +A
Sbjct: 121 WVRGHNGDPGNEHADMLANRGVE 143
>gi|114570767|ref|YP_757447.1| RNase HI [Maricaulis maris MCS10]
gi|122315489|sp|Q0AMI4|RNH_MARMM RecName: Full=Ribonuclease H; Short=RNase H
gi|114341229|gb|ABI66509.1| RNase HI [Maricaulis maris MCS10]
Length = 149
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
+ + +TDGACSGNPGPGGWG +L + G K + GGE +TTNNRME+MAAI+AL A K
Sbjct: 1 MSTITIHTDGACSGNPGPGGWGAILEWNGHRKELKGGEADTTNNRMEMMAAIQALEALRK 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V+L TDS Y+ G ++WI W++ GWKT+DKK VKN+DLW + E + H +D W
Sbjct: 61 ADRSVILITDSVYLRDGITKWIHGWKKRGWKTADKKPVKNVDLWQRLDELTRSHTIDWRW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHAG+ NE+ D +AR + +
Sbjct: 121 VKGHAGDPGNERADELAREGLAEARGR 147
>gi|326388869|ref|ZP_08210451.1| RNase HI [Novosphingobium nitrogenifigens DSM 19370]
gi|326206469|gb|EGD57304.1| RNase HI [Novosphingobium nitrogenifigens DSM 19370]
Length = 140
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 102/139 (73%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDGAC GNPG GGWG LLR E+ +SGGE+ETTNNRME+ A ++AL ALK PC +
Sbjct: 2 EIFTDGACKGNPGKGGWGALLRSGAHERELSGGERETTNNRMEMTAVLRALEALKEPCAI 61
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L+TDS YV G ++WI WQ+ GWKT+D K VKN DLW V A+ HK++ W++GH+
Sbjct: 62 RLHTDSRYVLDGMTKWIFGWQKKGWKTADNKPVKNEDLWRALVTAARPHKIEWVWVRGHS 121
Query: 130 GNQENEKVDRIARNAAVSF 148
G+ ENE+VDR+A +AA++
Sbjct: 122 GHPENERVDRLASDAAIAA 140
>gi|52841613|ref|YP_095412.1| ribonuclease H [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54297293|ref|YP_123662.1| ribonuclease H [Legionella pneumophila str. Paris]
gi|148358914|ref|YP_001250121.1| hypothetical protein LPC_0799 [Legionella pneumophila str. Corby]
gi|296106962|ref|YP_003618662.1| ribonuclease HI [Legionella pneumophila 2300/99 Alcoy]
gi|81822587|sp|Q5X5I2|RNH_LEGPA RecName: Full=Ribonuclease H; Short=RNase H
gi|81823413|sp|Q5ZVQ7|RNH_LEGPH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611378|sp|A5IBM5|RNH_LEGPC RecName: Full=Ribonuclease H; Short=RNase H
gi|52628724|gb|AAU27465.1| ribonuclease HI [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53751078|emb|CAH12489.1| hypothetical protein lpp1338 [Legionella pneumophila str. Paris]
gi|148280687|gb|ABQ54775.1| hypothetical protein LPC_0799 [Legionella pneumophila str. Corby]
gi|295648863|gb|ADG24710.1| ribonuclease HI [Legionella pneumophila 2300/99 Alcoy]
Length = 143
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 101/141 (71%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC GNPGPGGWGVLLRY G+EK + GGE +TTNNRMELMAAIK L ALK PC
Sbjct: 2 KVEIYTDGACKGNPGPGGWGVLLRYNGREKTLHGGEAQTTNNRMELMAAIKGLEALKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V LYTDS Y+ +G +WIK W++NGW+ S K+ VKN +LW ++ H + +W+KG
Sbjct: 62 EVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELWKSLDNLASIHNIHWHWVKG 121
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G+ EN+ VD +A
Sbjct: 122 HSGHLENDLVDALANLGIEEL 142
>gi|120599050|ref|YP_963624.1| ribonuclease H [Shewanella sp. W3-18-1]
gi|146292879|ref|YP_001183303.1| ribonuclease H [Shewanella putrefaciens CN-32]
gi|189043716|sp|A4Y6C1|RNH_SHEPC RecName: Full=Ribonuclease H; Short=RNase H
gi|189043719|sp|A1RK75|RNH_SHESW RecName: Full=Ribonuclease H; Short=RNase H
gi|120559143|gb|ABM25070.1| ribonuclease H [Shewanella sp. W3-18-1]
gi|145564569|gb|ABP75504.1| ribonuclease H [Shewanella putrefaciens CN-32]
gi|319426197|gb|ADV54271.1| ribonuclease H [Shewanella putrefaciens 200]
Length = 156
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 103/146 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL +LK P
Sbjct: 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIIALESLKEP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V+L +DS Y+ +G WI W++ GW TS++ VKN+DLW + + S H +D W+K
Sbjct: 65 CRVVLTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKVSQMHTIDWQWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ ENE+ D +AR+AA + +I
Sbjct: 125 GHAGHAENERCDILARSAAEANPTQI 150
>gi|254456903|ref|ZP_05070331.1| RNase H [Campylobacterales bacterium GD 1]
gi|207085695|gb|EDZ62979.1| RNase H [Campylobacterales bacterium GD 1]
Length = 142
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+ GNPGPGG+GV+LRY KE+ I G E TTNNRMEL+ I+ L AL
Sbjct: 1 MKKITLFSDGSALGNPGPGGYGVILRYDDKEREIVGSEVHTTNNRMELLGVIEGLRALSE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V + +DSSYV KG ++W+ W D K VKN DLW ++E S HK++ W+
Sbjct: 61 KCEVDIISDSSYVVKGINEWLANWI-----KKDFKKVKNPDLWRDYIEVSQGHKINAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
+GH G++ENE+ D++AR+ A K +
Sbjct: 116 RGHDGHEENERCDKLARDEAEKIKASL 142
>gi|146329571|ref|YP_001209986.1| RNase H [Dichelobacter nodosus VCS1703A]
gi|187611369|sp|A5EXP9|RNH_DICNV RecName: Full=Ribonuclease H; Short=RNase H
gi|146233041|gb|ABQ14019.1| RNase H [Dichelobacter nodosus VCS1703A]
Length = 150
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ + DGAC GNPG GGWGVL+RY EK++ G + TTNNRMEL AAI+AL A+K PC
Sbjct: 6 LDIFVDGACKGNPGIGGWGVLMRYGQHEKVLMGAQWHTTNNRMELTAAIEALKAIKRPCP 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+L+ TDS YV G + W+ W++N W+ + KK +KNI+LW + + +++++ W+KGH
Sbjct: 66 ILISTDSVYVKNGITHWLPVWKKNNWRNASKKPIKNIELWQALDQLNQRYEIEWRWVKGH 125
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
AGN NE D +A A S + K
Sbjct: 126 AGNPGNEIADELANRAIESLRQK 148
>gi|312116086|ref|YP_004013682.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
gi|311221215|gb|ADP72583.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
Length = 170
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 96/142 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y+DG C GNPGPGGWG +L YKG+EK + GGE TTNNRMELM AIKAL L PC+
Sbjct: 13 VVVYSDGGCHGNPGPGGWGAVLIYKGREKDLWGGEPLTTNNRMELMGAIKALEELTRPCE 72
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+TDS YV G +QWI W+ NGWKT+ +K VKN +LW + A H V +W+KGH
Sbjct: 73 VDLFTDSQYVRNGITQWIGGWKANGWKTAARKPVKNAELWQRLDAARKHHDVRWHWVKGH 132
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
AGN NE+ D++ + A K
Sbjct: 133 AGNALNERADKLTQKAIAEQKE 154
>gi|152995730|ref|YP_001340565.1| ribonuclease H [Marinomonas sp. MWYL1]
gi|150836654|gb|ABR70630.1| Ribonuclease H [Marinomonas sp. MWYL1]
Length = 142
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/138 (52%), Positives = 89/138 (64%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDGAC GNPG GGWG L + EK + GGE +TTNNRMELM AI+ L ALK C V L
Sbjct: 2 YTDGACKGNPGIGGWGAWLTFGEHEKHLCGGEHDTTNNRMELMGAIEGLRALKEKCSVTL 61
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
YTDSSYV KG ++W+ W++ GW T+ K+ VKN DLW E H+V W+KGHAG
Sbjct: 62 YTDSSYVQKGITEWLAGWKRKGWMTASKQPVKNKDLWQALDEQCQYHEVTWKWVKGHAGI 121
Query: 132 QENEKVDRIARNAAVSFK 149
+ NE D++A +
Sbjct: 122 EGNEIADQLANKGIDELR 139
>gi|254805383|ref|YP_003083604.1| Ribonuclease HI [Neisseria meningitidis alpha14]
gi|254668925|emb|CBA07142.1| Ribonuclease HI [Neisseria meningitidis alpha14]
gi|254670075|emb|CBA04953.1| Ribonuclease HI [Neisseria meningitidis alpha153]
Length = 145
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 95/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWAWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE+ D +A A F
Sbjct: 123 GHAGHAENERADDLANRGAAQF 144
>gi|121635270|ref|YP_975515.1| ribonuclease HI [Neisseria meningitidis FAM18]
gi|189043701|sp|A1KV38|RNH_NEIMF RecName: Full=Ribonuclease H; Short=RNase H
gi|120866976|emb|CAM10739.1| ribonuclease HI [Neisseria meningitidis FAM18]
gi|325132696|gb|EGC55379.1| ribonuclease HI [Neisseria meningitidis M6190]
gi|325138582|gb|EGC61141.1| ribonuclease H [Neisseria meningitidis ES14902]
gi|325142777|gb|EGC65149.1| ribonuclease H [Neisseria meningitidis 961-5945]
gi|325198730|gb|ADY94186.1| ribonuclease H [Neisseria meningitidis G2136]
Length = 145
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 94/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK C
Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+KGH
Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 125 AGHAENERADDLANRGAAQF 144
>gi|319408223|emb|CBI81876.1| ribonuclease H [Bartonella schoenbuchensis R1]
Length = 155
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/144 (51%), Positives = 103/144 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGACSGNPGPGGWG +LR+ G+E+ + GG++ TTNN+MELMAAI AL ALK
Sbjct: 6 KVIEIYTDGACSGNPGPGGWGAILRWNGRERELYGGKEYTTNNQMELMAAICALNALKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS YV G S W+K W++N W+T+ VKN++LW +A ++H V +W+K
Sbjct: 66 CSIDLYTDSVYVRNGISMWLKGWKKNDWRTASNDPVKNVELWQALDDACSRHDVRWHWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAIAEYRK 149
>gi|295697111|ref|YP_003590349.1| Ribonuclease H [Bacillus tusciae DSM 2912]
gi|295412713|gb|ADG07205.1| Ribonuclease H [Bacillus tusciae DSM 2912]
Length = 156
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 99/140 (70%), Gaps = 1/140 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L Y + ++GGE+ TTN RMEL+AAI AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWAAVLLYGDHVREMAGGEEHTTNQRMELLAAIYALRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V L++DS+Y+ F Q W ++W+ NGW+ S ++ V+N +LW + + + H+VD
Sbjct: 61 PCRVRLFSDSAYLVNCFRQGWHRRWRANGWRNSRQEPVQNRELWEELLRLTDVHRVDFEK 120
Query: 125 IKGHAGNQENEKVDRIARNA 144
++GHAG+ NE+ D +AR A
Sbjct: 121 VQGHAGDAWNERCDALARAA 140
>gi|119486507|ref|ZP_01620565.1| ribonuclease H [Lyngbya sp. PCC 8106]
gi|119456409|gb|EAW37540.1| ribonuclease H [Lyngbya sp. PCC 8106]
Length = 254
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+S L+EV YTDGAC GNPGPGG+G++L + +SGG + TTNNRME+MAAI L
Sbjct: 88 NSSKLQEVILYTDGACQGNPGPGGYGIVLIRGDHREELSGGFQFTTNNRMEMMAAIVGLE 147
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-VKNIDLWMKFVEASAQHKV 120
L KV LY+DS YV + + Q +KK N DLW + ++ +QH+V
Sbjct: 148 VLDKKSKVKLYSDSKYVVDAIEKGWAERWQANGWKRNKKELAMNPDLWEQLLKLCSQHQV 207
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAGN+ENE DR+A
Sbjct: 208 KFVWVKGHAGNRENECCDRLAVQGCQQ 234
>gi|313667992|ref|YP_004048276.1| ribonuclease HI [Neisseria lactamica ST-640]
gi|313005454|emb|CBN86889.1| ribonuclease HI [Neisseria lactamica 020-06]
Length = 145
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 95/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L +LK C
Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+KGH
Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 125 AGHAENERADDLANRGAAQF 144
>gi|210632656|ref|ZP_03297498.1| hypothetical protein COLSTE_01401 [Collinsella stercoris DSM 13279]
gi|210159433|gb|EEA90404.1| hypothetical protein COLSTE_01401 [Collinsella stercoris DSM 13279]
Length = 173
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 93/145 (64%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V YTDG+ GNPGPGG+G +LRY K +S G TTNNRMEL+ I AL A
Sbjct: 13 KVIVYTDGSSRGNPGPGGYGAVLRYTAPSGKLHTLELSRGYDRTTNNRMELLGVISALEA 72
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L PC+V +++DS YV F+Q + W + GWKTS KK VKN+DLW + + A H+V
Sbjct: 73 LNRPCEVEVHSDSQYVCNAFNQHWVEGWIRRGWKTSQKKPVKNVDLWKRLLAAKEPHRVT 132
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG++ NE+ D +A AA
Sbjct: 133 FHWVKGHAGHEFNERCDELATKAAD 157
>gi|167627745|ref|YP_001678245.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|189043697|sp|B0TZ91|RNH_FRAP2 RecName: Full=Ribonuclease H; Short=RNase H
gi|167597746|gb|ABZ87744.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 152
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 97/145 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V AYTDGAC GNPG GGWG +L Y G +K ISG EK+TTNNRMELMAAIK L ALK
Sbjct: 8 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEISGAEKDTTNNRMELMAAIKTLQALKRK 67
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + +YTDS Y+ G +QW+ W+ NGWKT+ KK VKN DLW + + +H V W+K
Sbjct: 68 CDITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQELDSLTTKHNVTWSWVK 127
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH+GNQ NEK D +A A K
Sbjct: 128 GHSGNQGNEKADELANKAIAELTGK 152
>gi|309378397|emb|CBX22998.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 145
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 94/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY +EK + GGE +TTNNRMEL A I+ L LK C
Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKLLKRRCT 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+KGH
Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 125 AGHAENERADDLANRGAAQF 144
>gi|261856415|ref|YP_003263698.1| ribonuclease H [Halothiobacillus neapolitanus c2]
gi|261836884|gb|ACX96651.1| Ribonuclease H [Halothiobacillus neapolitanus c2]
Length = 163
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/138 (54%), Positives = 97/138 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ VH +TDGAC GNPGPGGWG LLRY E+ + GGE TTNNRMEL+AAI AL ALK P
Sbjct: 22 QTVHIWTDGACKGNPGPGGWGALLRYGDTERELCGGEAHTTNNRMELLAAISALEALKRP 81
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV +G +W+ W++ W+ +D + VKN DLW + EA+ +H + +WIK
Sbjct: 82 CTVHLTTDSQYVRQGMLEWLPNWRKKNWRRADGQPVKNADLWARLDEAAQRHDMHWHWIK 141
Query: 127 GHAGNQENEKVDRIARNA 144
GHAG+ ENE+ D++A
Sbjct: 142 GHAGHPENERADQLANQG 159
>gi|319406867|emb|CBI80502.1| ribonuclease H [Bartonella sp. 1-1C]
Length = 155
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 79/144 (54%), Positives = 104/144 (72%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWGV+LR+ G E+ + GGE TTNN+MELMAAI+AL +LK
Sbjct: 6 KVVEIYTDGACSGNPGLGGWGVVLRWNGHERELYGGEVYTTNNQMELMAAIRALNSLKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS+YV G S WI++W++N W+T+ K VKN++LW A AQH + +WIK
Sbjct: 66 CLVDLYTDSAYVRNGISTWIERWKKNNWRTASKNPVKNMELWQNLDYACAQHDIRWHWIK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAIAEYRE 149
>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
[Psychrobacter arcticus 273-4]
gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Psychrobacter arcticus 273-4]
Length = 527
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTALKYPCK 68
AYTDGAC GNPG GGWG L + GG+KETTNNRMELM AI+ALT +
Sbjct: 28 VAYTDGACKGNPGAGGWGAHLIFSDGRTQDLYGGDKETTNNRMELMGAIQALTHSPHEQN 87
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++TDSSYV KG ++WI+ W++ GWKT+ KK V N DLW + E VD +W+KGH
Sbjct: 88 LEIWTDSSYVKKGITEWIEGWKKRGWKTASKKPVANQDLWQRLDELCQHRDVDWHWVKGH 147
Query: 129 AGNQENEKVDRIARNAAVS 147
AG+ NEK D +A S
Sbjct: 148 AGHAGNEKADELANLGVTS 166
>gi|302528079|ref|ZP_07280421.1| ribonuclease HI [Streptomyces sp. AA4]
gi|302436974|gb|EFL08790.1| ribonuclease HI [Streptomyces sp. AA4]
Length = 159
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 76/148 (51%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKA 59
M + V YTDGACSGNPGPGGWG LLRY E+ + G E TTNNRMELMA I+A
Sbjct: 1 MAEQTEEAVEIYTDGACSGNPGPGGWGALLRYGKHERELYGAEDTVTTNNRMELMAPIRA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L +L V +YTDS+YV G QW+ +W++NGW+T K+ VKN DLW + A QH+
Sbjct: 61 LESLTRASVVRIYTDSTYVRNGILQWMPRWKKNGWQTQAKQPVKNADLWQRLDTACRQHE 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V+ W+KGHAG ENE+ D++A +
Sbjct: 121 VEWLWVKGHAGLPENERADKLAVKGSQE 148
>gi|325128651|gb|EGC51519.1| ribonuclease H [Neisseria meningitidis N1568]
Length = 145
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 94/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK C
Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + QH+V W+KGH
Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDVLVGQHQVSWTWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG+ ENE+ D +A A F
Sbjct: 125 AGHAENERADDLANRGAAQF 144
>gi|187479404|ref|YP_787429.1| ribonuclease H [Bordetella avium 197N]
gi|123724928|sp|Q2KV56|RNH_BORA1 RecName: Full=Ribonuclease H; Short=RNase H
gi|115423991|emb|CAJ50544.1| ribonuclease HI [Bordetella avium 197N]
Length = 153
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/139 (49%), Positives = 93/139 (66%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPGPGGWGVL+RY EK GG+ +TTNNRME++A ++ L ALK C
Sbjct: 11 VEMWTDGACKGNPGPGGWGVLMRYGSHEKTFFGGDPQTTNNRMEILAVVEGLRALKRACT 70
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+++TDS YV KG ++W+ W++ GW T+DKK VKN +LW A+H+V W++GH
Sbjct: 71 VVIHTDSQYVMKGMTEWLPNWKRRGWLTADKKPVKNAELWQLLDAQVARHEVRWQWVRGH 130
Query: 129 AGNQENEKVDRIARNAAVS 147
G+ NE D +A S
Sbjct: 131 NGDPGNEMADMLANQGVAS 149
>gi|167648350|ref|YP_001686013.1| ribonuclease H [Caulobacter sp. K31]
gi|189043685|sp|B0T025|RNH_CAUSK RecName: Full=Ribonuclease H; Short=RNase H
gi|167350780|gb|ABZ73515.1| Ribonuclease H [Caulobacter sp. K31]
Length = 154
Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 81/140 (57%), Positives = 99/140 (70%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ YTDGAC GNPGPGGWG LL Y K+K I GG+ TTNNRMELMAAI+AL AL P
Sbjct: 4 KLVIYTDGACRGNPGPGGWGALLMYGDKKKEIMGGDLATTNNRMELMAAIQALEALNKPT 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K L+TDS YV KG +QWI W+ GWKT+DK VKN+DLW + A A+H+VD W+KG
Sbjct: 64 KAELHTDSQYVMKGVTQWIHGWKAKGWKTADKSPVKNVDLWQRLDAARARHEVDWRWVKG 123
Query: 128 HAGNQENEKVDRIARNAAVS 147
HAG+ NE+ D +AR +
Sbjct: 124 HAGHVHNERADELARLGMLK 143
>gi|258450501|gb|ACV72180.1| ribonuclease H [uncultured organism]
Length = 169
Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/141 (48%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V YTDG+C GNPGPGG+GV+L + K +SGG + TTNNRME+MAAI L +LK
Sbjct: 4 LKNVTIYTDGSCIGNPGPGGYGVVLLFGNHRKELSGGFRMTTNNRMEIMAAIVGLESLKD 63
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C+V LYTDS Y+ Q ++W+ NGW + K+ N DLW + ++ +H+V+ W
Sbjct: 64 TCRVTLYTDSQYLANAIMQGWAQRWRANGWMRNKKEKAINPDLWDRLLKLCDRHEVEFVW 123
Query: 125 IKGHAGNQENEKVDRIARNAA 145
+K HAGN+ENE+ D++ R AA
Sbjct: 124 VKAHAGNRENERCDQLGREAA 144
>gi|62257916|gb|AAX77753.1| unknown protein [synthetic construct]
Length = 195
Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 96/148 (64%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
K V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L AL
Sbjct: 39 KKKNRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQAL 98
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C + +YTDS Y+ G ++W+ W+ NGWKT+ KK VKN DLW + + +H V
Sbjct: 99 KRKCDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWG 158
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGH+GN NEK D +A A K
Sbjct: 159 WVKGHSGNAGNEKADELANKAIAELIGK 186
>gi|220931738|ref|YP_002508646.1| Ribonuclease H [Halothermothrix orenii H 168]
gi|219993048|gb|ACL69651.1| Ribonuclease H [Halothermothrix orenii H 168]
Length = 269
Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 93/143 (65%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ + YTDGACSGNPGPGG+ ++ +G+E++++G E ETTNNRMEL A I+AL +K
Sbjct: 123 KMEPIKVYTDGACSGNPGPGGYAAVILNQGQERVVAGYEDETTNNRMELRAVIEALKEIK 182
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+V +Y+DSSY+ G WI W++ GWKTS K V N DLW+K S++ +
Sbjct: 183 EGREVHVYSDSSYIINGMKSWIDDWKKRGWKTSSNKPVSNKDLWLKLDNLSSKFNIKFKK 242
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGH+G++ NEK D +AR
Sbjct: 243 VKGHSGDEYNEKADSLARKQIEE 265
>gi|285017396|ref|YP_003375107.1| ribonuclease h (rnase h) protein [Xanthomonas albilineans GPE PC73]
gi|283472614|emb|CBA15119.1| probable ribonuclease h (rnase h) protein [Xanthomonas albilineans]
Length = 152
Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 102/144 (70%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGAC GNPGPGGW LLRYK +E+ ++G E TTNNRMELMAAI AL L
Sbjct: 1 MKTVDIHTDGACLGNPGPGGWAALLRYKDQEREVAGAEAHTTNNRMELMAAIMALETLNA 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+++L+TDS YV +G ++W+ W + WKT+ VKN DLW + A+ +H +D W+
Sbjct: 61 PCQIVLHTDSQYVRQGITEWMPGWVRRQWKTAGGDPVKNRDLWERLHAAAQRHAIDWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH G+ +NE+VD++AR+ AV +
Sbjct: 121 KGHNGDPDNERVDQLARDQAVRAR 144
>gi|257784905|ref|YP_003180122.1| ribonuclease H [Atopobium parvulum DSM 20469]
gi|257473412|gb|ACV51531.1| ribonuclease H [Atopobium parvulum DSM 20469]
Length = 170
Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 90/145 (62%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYK-----GKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNPGPGG+G +L Y K S G K TTNNRMEL+ I AL A
Sbjct: 9 HVTVYTDGASRGNPGPGGYGAVLLYTDPSGQQHTKEFSQGYKTTTNNRMELLGVIVALEA 68
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC+V LY+DS YV F+Q W + GWKT+ K+ VKN+DLW + + A H+V
Sbjct: 69 LKRPCQVELYSDSKYVVDAFNQKWVSGWVRKGWKTASKEPVKNVDLWKRLLAAMEDHEVS 128
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG+ NE+ D++A AA
Sbjct: 129 FKWVKGHAGHPLNERCDQLATEAAD 153
>gi|218295205|ref|ZP_03496041.1| Ribonuclease H [Thermus aquaticus Y51MC23]
gi|218244408|gb|EED10933.1| Ribonuclease H [Thermus aquaticus Y51MC23]
Length = 161
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L+ V +TDGAC GNPGPGGW LLRY +EK++SGGE TTNNRMEL AA++ L AL+
Sbjct: 4 PLKRVDLFTDGACLGNPGPGGWAALLRYGSQEKLLSGGEPCTTNNRMELRAALEGLLALR 63
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PC+V L+TDS Y+ + F++ ++WQ+NGW+T++ K VKN DLW ++A H+V +
Sbjct: 64 EPCQVHLHTDSQYLKRAFAEGWVERWQRNGWRTAEGKPVKNQDLWQALLKAMEGHEVAFH 123
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
+++GH+G+ ENE+VDR AR A +
Sbjct: 124 FVEGHSGHPENERVDREARRQAKA 147
>gi|268317538|ref|YP_003291257.1| ribonuclease H [Rhodothermus marinus DSM 4252]
gi|262335072|gb|ACY48869.1| ribonuclease H [Rhodothermus marinus DSM 4252]
Length = 159
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S + V YTDGACSGNPGPGGW +LRY EK+++G TTNNRMEL A I+AL A
Sbjct: 2 STPRKHVVIYTDGACSGNPGPGGWAAILRYNQHEKVLTGAAPHTTNNRMELTAVIEALRA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC+V +YTDS+Y+ + F + W+ +WQ+NGW+T+ KK V+N DLW +E + +H V
Sbjct: 62 LKEPCRVDVYTDSNYIVRAFQEGWVDRWQRNGWRTASKKPVENQDLWRALLELTRRHDVR 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHA + N +VDR+A A + K
Sbjct: 122 FLKVKGHADDALNNRVDRLAVEAMRRGQTK 151
>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter haemolyticus ATCC 19194]
gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter haemolyticus ATCC 19194]
Length = 452
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + +E + GGE ETTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACKGNPGLGGWGAYIITEQEEHKLFGGEAETTNNRMELQAAIEGISFCPID 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWKKLDAVCANRDIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGAEQTAQQL 143
>gi|56707717|ref|YP_169613.1| ribonuclease H [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670188|ref|YP_666745.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC198]
gi|254369208|ref|ZP_04985220.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
gi|254370223|ref|ZP_04986229.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
gi|254373045|ref|ZP_04988534.1| ribonuclease H [Francisella tularensis subsp. novicida GA99-3549]
gi|254374497|ref|ZP_04989978.1| ribonuclease H [Francisella novicida GA99-3548]
gi|254874531|ref|ZP_05247241.1| ribonuclease H [Francisella tularensis subsp. tularensis MA00-2987]
gi|56604209|emb|CAG45223.1| Ribonuclease H [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320521|emb|CAL08606.1| Ribonuclease H [Francisella tularensis subsp. tularensis FSC198]
gi|151568467|gb|EDN34121.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
gi|151570772|gb|EDN36426.1| ribonuclease H [Francisella novicida GA99-3549]
gi|151572216|gb|EDN37870.1| ribonuclease H [Francisella novicida GA99-3548]
gi|157122158|gb|EDO66298.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
gi|254840530|gb|EET18966.1| ribonuclease H [Francisella tularensis subsp. tularensis MA00-2987]
Length = 160
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 96/148 (64%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
K V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L AL
Sbjct: 13 KKKNRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQAL 72
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C + +YTDS Y+ G ++W+ W+ NGWKT+ KK VKN DLW + + +H V
Sbjct: 73 KRKCDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWG 132
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGH+GN NEK D +A A K
Sbjct: 133 WVKGHSGNAGNEKADELANKAIAELIGK 160
>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
Length = 458
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE +TTNNRMEL AAI+ +
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGVAFCPTD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ +WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWHWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ NE D +A A
Sbjct: 118 GHAGHAGNEMADELANIGADQ 138
>gi|85705027|ref|ZP_01036127.1| ribonuclease HI [Roseovarius sp. 217]
gi|85670349|gb|EAQ25210.1| ribonuclease HI [Roseovarius sp. 217]
Length = 155
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 104/149 (69%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++AYTDGACSGNPGPGGWGVL+R KE+ +SGGE +TTNNRMEL AAI AL
Sbjct: 1 MLALYAYTDGACSGNPGPGGWGVLMRAMEGDTIVKERELSGGEADTTNNRMELCAAIAAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P + + TDS+YV G + W+ W++NGW+T+DKK VKN++LW + EA +H V
Sbjct: 61 EALSRPSAITIVTDSAYVKNGITGWMHGWKRNGWRTADKKPVKNVELWQRLDEAQKRHTV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFK 149
>gi|71726089|gb|AAZ39212.1| RNase H [Janthinobacterium lividum]
gi|118161397|gb|ABK64079.1| putative ribonuclease H [Janthinobacterium lividum]
Length = 145
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 97/144 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V Y DGAC GNPG GGWG L+ G +K I GGE TTNNRMEL A I+ALTALK
Sbjct: 1 MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+LYTDS YV KG S+WI W+ GWKT+ K VKN+DLW A A H+V+ W+
Sbjct: 61 PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH G+ NE+ D++A + +
Sbjct: 121 RGHNGHPGNERADQLANLGVETVR 144
>gi|260574970|ref|ZP_05842972.1| Ribonuclease H [Rhodobacter sp. SW2]
gi|259022975|gb|EEW26269.1| Ribonuclease H [Rhodobacter sp. SW2]
Length = 153
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 84/150 (56%), Positives = 112/150 (74%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVL++ + KE+ +SGGE +TTNNRMELMAAI AL
Sbjct: 1 MTDLFAYTDGACSGNPGPGGWGVLMQARDGAVVVKERTLSGGEADTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK +++ TDS+YV G + W+ W++NGWKT+D+K VKN+DLW++ EA A+HKV
Sbjct: 61 EALKRDAGIVIVTDSAYVKNGVTTWMTGWKRNGWKTADRKPVKNVDLWLRLDEAQARHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ WIKGHAG++ENE+ D +AR FK
Sbjct: 121 EWRWIKGHAGHEENERADELARAGMAPFKK 150
>gi|258450507|gb|ACV72183.1| ribonuclease H [uncultured organism]
Length = 145
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV A+TDGAC GNPGPGGWGV+LR++G K + GGE TTNNRMEL AAI+AL ALK
Sbjct: 1 MKEVEAFTDGACRGNPGPGGWGVVLRHRGHVKELCGGEPSTTNNRMELTAAIRALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDS+YV KG ++W+ +W GW+T + + DLWM+ + +H V +W+
Sbjct: 61 PCRVHLYTDSTYVKKGVTEWLPQWVARGWRTRT-RNGEEQDLWMELDALTKRHHVTWHWV 119
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GHAG+ +NE+ D +A +
Sbjct: 120 RGHAGHVDNERADALANQGLEQVLKR 145
>gi|15838749|ref|NP_299437.1| ribonuclease H [Xylella fastidiosa 9a5c]
gi|9107295|gb|AAF84957.1|AE004030_3 ribonuclease H [Xylella fastidiosa 9a5c]
Length = 153
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/149 (50%), Positives = 106/149 (71%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ ++ ++AYTDG+C GNPGPGGW VLLRYK EK + GGE +TTNNRMELMAAI AL L
Sbjct: 2 ESMKSINAYTDGSCLGNPGPGGWAVLLRYKNNEKELVGGELDTTNNRMELMAAIMALERL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PC++ L+TDS YV +G ++W+ W + GWKT+ VKN DLW + A+ +H V+
Sbjct: 62 SEPCQIKLHTDSQYVRQGITEWMSGWVRRGWKTAAGDPVKNRDLWERLCAATQRHMVEWC 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+K H G+ +NE+VD +AR A++ ++ +
Sbjct: 122 WVKAHNGDSDNERVDVLARGQAMAQRSTV 150
>gi|116748297|ref|YP_844984.1| ribonuclease H [Syntrophobacter fumaroxidans MPOB]
gi|187611400|sp|A0LGJ7|RNH_SYNFM RecName: Full=Ribonuclease H; Short=RNase H
gi|116697361|gb|ABK16549.1| RNase HI [Syntrophobacter fumaroxidans MPOB]
Length = 164
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 98/140 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V + DGAC GNPGPGGWG +LRY GKEK +SG + TTNN+MEL A I+AL ALK P
Sbjct: 15 KHVEIFADGACRGNPGPGGWGAVLRYHGKEKELSGYAEYTTNNQMELAAVIQALRALKEP 74
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V + TDS Y+ G S WI KW+QNGWKT K V+N +LW+ EA H++D W+K
Sbjct: 75 CRVTITTDSRYLRDGISLWIHKWKQNGWKTRVKTDVRNKELWIALDEACLPHEIDWQWVK 134
Query: 127 GHAGNQENEKVDRIARNAAV 146
GH+G+ ENE+ D +AR A
Sbjct: 135 GHSGHPENERCDALARAAID 154
>gi|319405296|emb|CBI78910.1| ribonuclease H [Bartonella sp. AR 15-3]
Length = 155
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 100/144 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG +LR+ G E+ + GGE TTNN+MELMAAI+AL ALK
Sbjct: 6 KVVEIYTDGACSGNPGLGGWGAVLRWNGHERELYGGEVYTTNNQMELMAAIRALNALKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS+YV G S WI++W++N W + K VKN+ LW +A + H + YWIK
Sbjct: 66 CLVDLYTDSAYVRNGISTWIERWKKNNWCAASKSPVKNMKLWQALDDACSHHNIRWYWIK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAITEYRE 149
>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ATCC 27244]
gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ATCC 27244]
Length = 452
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + +E + GGE ETTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACKGNPGLGGWGAYIITEQEEHKLFGGEAETTNNRMELQAAIEGISFCPID 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWKKLDAVCANRDIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D++A A ++
Sbjct: 118 GHAGHAGNEMADQLANLGAEQTAQQL 143
>gi|67921548|ref|ZP_00515066.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
gi|67856660|gb|EAM51901.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
Length = 156
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGACSGNPG GG+G++L Y K +SGG + TTNNRME+MAAI AL AL
Sbjct: 1 MNKVQIYTDGACSGNPGKGGYGIILAYNEHRKELSGGYRLTTNNRMEMMAAIIALEALNK 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYW 124
PC V+LYTDS YV ++ K Q +KK + ++ QH+V+ W
Sbjct: 61 PCDVILYTDSRYVVDAITKGWAKKWQANDWQRNKKEQAKNPDLWQRLLDLCEQHQVEFVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+KGHAG+ ENE+ DR+A A + I
Sbjct: 121 VKGHAGHPENEQCDRLAVAACQEVELSI 148
>gi|319403855|emb|CBI77441.1| ribonuclease H [Bartonella rochalimae ATCC BAA-1498]
Length = 155
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 103/144 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG +LR+ G E+ + GGE TTNN+MELMAAI+AL ALK
Sbjct: 6 KVVEIYTDGACSGNPGLGGWGAILRWNGHERELYGGEVYTTNNQMELMAAIRALNALKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS+YV G S W+++W++N W+T+ K VKN++LW A +QH + +WIK
Sbjct: 66 CLVDLYTDSAYVRNGISTWVERWKKNNWRTASKNPVKNMELWQALDYACSQHDIRWHWIK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAITEYRE 149
>gi|253700387|ref|YP_003021576.1| ribonuclease H [Geobacter sp. M21]
gi|251775237|gb|ACT17818.1| Ribonuclease H [Geobacter sp. M21]
Length = 148
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 96/142 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V + DGACSGNPG GG+G +LR K ISG + +TTNNRME+ AAI AL ALK PC
Sbjct: 2 QVEIFCDGACSGNPGVGGYGSILRCGETVKEISGADGDTTNNRMEMSAAIAALEALKRPC 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V++ TDS Y+ KG ++W+ W + GW S K+ V N DLW + +E S H++ W++G
Sbjct: 62 QVVVTTDSQYLAKGMTEWLSGWVKRGWVNSKKEPVLNRDLWERLLELSKVHQIRWVWVRG 121
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H G+ ENE+ D +AR A S++
Sbjct: 122 HNGHVENERCDELARAAIDSYR 143
>gi|258514650|ref|YP_003190872.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771]
gi|257778355|gb|ACV62249.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771]
Length = 154
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +V YTDGACSGNPGPGG+GV+L+Y K K +S ++TTNNRME++AAI L AL+
Sbjct: 1 MSQVEIYTDGACSGNPGPGGYGVVLKYGDKIKELSAAYRKTTNNRMEILAAIIGLEALRR 60
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LY+DS Y+ ++ W+K+W+ N W + ++ KNIDLW + + QH+VD W
Sbjct: 61 PCTVTLYSDSQYLVNAMTKGWVKRWKANNWMRNKQEAAKNIDLWERMLPLLEQHQVDWVW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHA N N + D +A A
Sbjct: 121 VKGHADNYYNNRCDFLAVRAIKE 143
>gi|220980056|emb|CAP72248.1| putative ribonuclease H [Escherichia coli LF82]
Length = 197
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L+ V ++DG+C NPG PGG+G++L+Y+G+E+ S G TTNNRME+M A+ L L
Sbjct: 37 QLKTVKIFSDGSCLKNPGGPGGYGIVLQYRGEEREFSDGFHSTTNNRMEMMGALIGLERL 96
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KYPC V+L++DS Y+ G + W+K W++NGW TSDKK VKN+DLW + EA+++H V
Sbjct: 97 KYPCNVILHSDSQYLKNGMTLWMKWWKRNGWMTSDKKPVKNVDLWKRLDEAASRHNVRWK 156
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG++ENE DR+A+ AA S
Sbjct: 157 WVKGHAGHRENEICDRLAKIAAFSA 181
>gi|293603367|ref|ZP_06685795.1| ribonuclease HI [Achromobacter piechaudii ATCC 43553]
gi|292818277|gb|EFF77330.1| ribonuclease HI [Achromobacter piechaudii ATCC 43553]
Length = 153
Score = 127 bits (318), Expect = 5e-28, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 98/144 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V +TDGAC GNPGPGGWGVLLR EK + GGE +TTNNRMELMA I+ L ALK
Sbjct: 9 QKVEMWTDGACKGNPGPGGWGVLLRAGDHEKTLHGGELQTTNNRMELMAVIQGLRALKRA 68
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V ++TDS YV KG ++W+ W++ GW T++KK VKN +LW E +H+V W++
Sbjct: 69 CVVTIHTDSQYVMKGMTEWLANWKRRGWVTAEKKPVKNAELWQALDEQVQRHQVSWRWVR 128
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG++ NE+ D++A +
Sbjct: 129 GHAGDEGNERADQLANMGVDVARR 152
>gi|254876846|ref|ZP_05249556.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842867|gb|EET21281.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 160
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 80/145 (55%), Positives = 96/145 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L ALK
Sbjct: 16 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGAEKDTTNNRMELMAAIKTLQALKRK 75
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + +YTDS Y+ G +QW+ W+ NGWKT+ KK VKN DLW + + +H V W+K
Sbjct: 76 CDITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQELDSLTTKHNVTWSWVK 135
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH+GNQ NEK D +A A K
Sbjct: 136 GHSGNQGNEKADELANKAIAELTGK 160
>gi|89256214|ref|YP_513576.1| ribonuclease H [Francisella tularensis subsp. holarctica LVS]
gi|115314681|ref|YP_763404.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
gi|118497679|ref|YP_898729.1| ribonuclease H [Francisella tularensis subsp. novicida U112]
gi|134302099|ref|YP_001122068.1| RNase H [Francisella tularensis subsp. tularensis WY96-3418]
gi|156502273|ref|YP_001428338.1| RNase H [Francisella tularensis subsp. holarctica FTNF002-00]
gi|167009749|ref|ZP_02274680.1| Ribonuclease H [Francisella tularensis subsp. holarctica FSC200]
gi|187931442|ref|YP_001891426.1| Ribonuclease H [Francisella tularensis subsp. mediasiatica FSC147]
gi|194323651|ref|ZP_03057427.1| RNase H [Francisella tularensis subsp. novicida FTE]
gi|208779743|ref|ZP_03247087.1| RNase H [Francisella novicida FTG]
gi|224456787|ref|ZP_03665260.1| ribonuclease H [Francisella tularensis subsp. tularensis MA00-2987]
gi|254367540|ref|ZP_04983566.1| hypothetical protein FTHG_00794 [Francisella tularensis subsp.
holarctica 257]
gi|290952959|ref|ZP_06557580.1| ribonuclease H [Francisella tularensis subsp. holarctica URFT1]
gi|295313831|ref|ZP_06804403.1| ribonuclease H [Francisella tularensis subsp. holarctica URFT1]
gi|122325296|sp|Q0BMB7|RNH_FRATO RecName: Full=Ribonuclease H; Short=RNase H
gi|123094521|sp|Q2A3X6|RNH_FRATH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611371|sp|A7NBM9|RNH_FRATF RecName: Full=Ribonuclease H; Short=RNase H
gi|187611372|sp|A0Q6W0|RNH_FRATN RecName: Full=Ribonuclease H; Short=RNase H
gi|187611373|sp|A4IYE6|RNH_FRATW RecName: Full=Ribonuclease H; Short=RNase H
gi|187611425|sp|Q14IN1|RNH_FRAT1 RecName: Full=Ribonuclease H; Short=RNase H
gi|238691548|sp|B2SFV9|RNH_FRATM RecName: Full=Ribonuclease H; Short=RNase H
gi|89144045|emb|CAJ79293.1| Ribonuclease H [Francisella tularensis subsp. holarctica LVS]
gi|115129580|gb|ABI82767.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
gi|118423585|gb|ABK89975.1| ribonuclease H [Francisella novicida U112]
gi|134049876|gb|ABO46947.1| RNase H [Francisella tularensis subsp. tularensis WY96-3418]
gi|134253356|gb|EBA52450.1| hypothetical protein FTHG_00794 [Francisella tularensis subsp.
holarctica 257]
gi|156252876|gb|ABU61382.1| RNase H [Francisella tularensis subsp. holarctica FTNF002-00]
gi|187712351|gb|ACD30648.1| Ribonuclease H [Francisella tularensis subsp. mediasiatica FSC147]
gi|194322015|gb|EDX19497.1| RNase H [Francisella tularensis subsp. novicida FTE]
gi|208744198|gb|EDZ90498.1| RNase H [Francisella novicida FTG]
gi|282158885|gb|ADA78276.1| Ribonuclease H [Francisella tularensis subsp. tularensis NE061598]
gi|332678392|gb|AEE87521.1| Ribonuclease HI [Francisella cf. novicida Fx1]
Length = 152
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 96/148 (64%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
K V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L AL
Sbjct: 5 KKKNRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQAL 64
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C + +YTDS Y+ G ++W+ W+ NGWKT+ KK VKN DLW + + +H V
Sbjct: 65 KRKCDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWG 124
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGH+GN NEK D +A A K
Sbjct: 125 WVKGHSGNAGNEKADELANKAIAELIGK 152
>gi|163744867|ref|ZP_02152227.1| ribonuclease H [Oceanibulbus indolifex HEL-45]
gi|161381685|gb|EDQ06094.1| ribonuclease H [Oceanibulbus indolifex HEL-45]
Length = 172
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMA 55
+ + +++AYTDGACSGNPGPGGWGVL+R KE+ + GGE +TTNNRMELMA
Sbjct: 14 LPETTMPDLYAYTDGACSGNPGPGGWGVLMRAMDGDKIVKERELKGGEGQTTNNRMELMA 73
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
AI AL +L ++ + TDS+YV G + WI W++NGWK + KK VKN +LW + A+
Sbjct: 74 AISALESLSRTTEITIVTDSNYVKNGITGWIFGWKKNGWKNAAKKPVKNAELWQRLDAAN 133
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
A+H V W+KGHAG+ ENE+ D +AR FK
Sbjct: 134 ARHNVTWKWVKGHAGHPENERADELARAGMAPFK 167
>gi|71276292|ref|ZP_00652570.1| RNase H [Xylella fastidiosa Dixon]
gi|71898479|ref|ZP_00680651.1| Ribonuclease H [Xylella fastidiosa Ann-1]
gi|170730489|ref|YP_001775922.1| ribonuclease H [Xylella fastidiosa M12]
gi|32130447|sp|Q9PBI6|RNH_XYLFA RecName: Full=Ribonuclease HI; Short=RNase HI
gi|71162900|gb|EAO12624.1| RNase H [Xylella fastidiosa Dixon]
gi|71731792|gb|EAO33851.1| Ribonuclease H [Xylella fastidiosa Ann-1]
gi|167965282|gb|ACA12292.1| ribonuclease H [Xylella fastidiosa M12]
Length = 150
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ ++AYTDG+C GNPGPGGW VLLRYK EK + GGE +TTNNRMELMAAI AL L
Sbjct: 1 MKSINAYTDGSCLGNPGPGGWAVLLRYKNNEKELVGGELDTTNNRMELMAAIMALERLSE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS YV +G ++W+ W + GWKT+ VKN DLW + A+ +H V+ W+
Sbjct: 61 PCQIKLHTDSQYVRQGITEWMSGWVRRGWKTAAGDPVKNRDLWERLCAATQRHMVEWCWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
K H G+ +NE+VD +AR A++ ++ +
Sbjct: 121 KAHNGDSDNERVDVLARGQAMAQRSTV 147
>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. DR1]
gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. DR1]
Length = 458
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE ETTNNRMEL AAI+ ++
Sbjct: 3 QTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPETTNNRMELTAAIEGVSFCPPD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW K A ++ WIK
Sbjct: 63 AHLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG+ NE D +A A
Sbjct: 118 GHAGHAGNEMADELANIGADQ 138
>gi|328675968|gb|AEB28643.1| Ribonuclease HI [Francisella cf. novicida 3523]
Length = 152
Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats.
Identities = 77/148 (52%), Positives = 97/148 (65%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
K V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L AL
Sbjct: 5 KKKNSVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQAL 64
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K C + +YTDS Y+ G ++W+ W+ NGW+T+ KK VKN DLW + +++H V
Sbjct: 65 KRKCNITIYTDSKYLQNGINEWLANWKANGWRTAAKKEVKNKDLWQELDSLTSKHNVTWS 124
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W++GH+GN NEK D +A A K
Sbjct: 125 WVRGHSGNIGNEKADELANKAIAELIGK 152
>gi|325204590|gb|ADZ00044.1| ribonuclease HI [Neisseria meningitidis M01-240355]
Length = 145
Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 94/142 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENE D +A A F
Sbjct: 123 GHAGHAENEHADDLANRGAAQF 144
>gi|126667361|ref|ZP_01738333.1| ribonuclease H [Marinobacter sp. ELB17]
gi|126628117|gb|EAZ98742.1| ribonuclease H [Marinobacter sp. ELB17]
Length = 146
Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPG GGWGV+LR+ K + GGE+ TTNNRMELMAAI+ L ALK C
Sbjct: 5 VIMYTDGACKGNPGRGGWGVVLRWGEVCKTLHGGEQHTTNNRMELMAAIEGLKALKRDCD 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV KG ++W+ W++NGWKT+ KK VKN DLW E S +H+V+ +W+KGH
Sbjct: 65 VELYTDSQYVRKGITEWLAGWKRNGWKTAAKKPVKNDDLWKALDEQSERHRVNWHWVKGH 124
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG +NE D++A
Sbjct: 125 AGVPDNELADQLANQGVEEL 144
>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
K5]
gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
K5]
Length = 532
Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/139 (51%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKALTALKYPCK 68
AYTDGAC GNPG GGWG L + GG+KETTNNRMELM AI+ALT + K
Sbjct: 28 VAYTDGACKGNPGAGGWGAHLIFSDGRTQDFYGGDKETTNNRMELMGAIQALTHSSHEQK 87
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++TDSSYV KG ++WI+ W++ GWKT+ KK V N DLW + E + VD +W+KGH
Sbjct: 88 LEIWTDSSYVKKGITEWIEGWKKRGWKTASKKPVANQDLWQRLDELCQKRDVDWHWVKGH 147
Query: 129 AGNQENEKVDRIARNAAVS 147
AG+ NEK D +A S
Sbjct: 148 AGHAGNEKADELANLGVTS 166
>gi|82702746|ref|YP_412312.1| ribonuclease H [Nitrosospira multiformis ATCC 25196]
gi|123727160|sp|Q2Y8K1|RNH_NITMU RecName: Full=Ribonuclease H; Short=RNase H
gi|82410811|gb|ABB74920.1| RNase HI [Nitrosospira multiformis ATCC 25196]
Length = 155
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 98/146 (67%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M +K V +TDGAC GNPG GGWG LL+Y G + + GGEK TTNNRMEL+A I+AL
Sbjct: 1 MKAKLAEVVEIFTDGACKGNPGVGGWGALLQYNGHRRELFGGEKMTTNNRMELLAVIRAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL PC+V L+TDS YV KG S+WI W++ W+T+DKK VKN DLW + + +HK+
Sbjct: 61 EALTKPCEVRLHTDSLYVQKGISEWIHAWKKRDWRTADKKPVKNDDLWRELDLLTQRHKI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ W++GH+G+ NE D +A
Sbjct: 121 EWLWVRGHSGHDGNEYADMLANRGVQ 146
>gi|121602209|ref|YP_988727.1| ribonuclease HI [Bartonella bacilliformis KC583]
gi|187611350|sp|A1URX4|RNH_BARBK RecName: Full=Ribonuclease H; Short=RNase H
gi|120614386|gb|ABM44987.1| ribonuclease HI [Bartonella bacilliformis KC583]
Length = 155
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 100/143 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGACSGNPG GGWG +LR+ E+ + GG++ TTNN+MELMAAI AL ALK
Sbjct: 6 KVIEIYTDGACSGNPGLGGWGAILRWNSHERELYGGKEYTTNNQMELMAAICALNALKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS YV G S W++ W++N W+T+ K VKN++LW A A+H V +W+K
Sbjct: 66 CSIDLYTDSVYVRNGISLWLENWKKNNWRTASKSPVKNMELWQALDGACARHNVRWHWVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GHAG+ +NE+ D +AR A ++
Sbjct: 126 GHAGHPDNERADALARKAITEYR 148
>gi|297538709|ref|YP_003674478.1| Ribonuclease H [Methylotenera sp. 301]
gi|297258056|gb|ADI29901.1| Ribonuclease H [Methylotenera sp. 301]
Length = 152
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 88/141 (62%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+E+ Y DGAC GNPGPGGWG + Y G+EK + GGE TTNNRMEL A I+AL AL
Sbjct: 5 KEIEIYADGACKGNPGPGGWGAWISYAGREKELFGGELLTTNNRMELTAVIRALEALNQS 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C ++TDS YV KG ++WI W+ W T+DKK VKN DLW + QH V W+K
Sbjct: 65 CHAKVFTDSVYVQKGMTEWIVGWKARNWCTADKKPVKNDDLWRALDVLAQQHTVQWIWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAGN NE+ D +A
Sbjct: 125 GHAGNAGNERADMLANKGVEQ 145
>gi|189184157|ref|YP_001937942.1| ribonuclease H [Orientia tsutsugamushi str. Ikeda]
gi|189180928|dbj|BAG40708.1| ribonuclease H [Orientia tsutsugamushi str. Ikeda]
Length = 168
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 4/146 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGWGV L YK E+ + G TTNNRMEL A I+AL LKY CK
Sbjct: 14 VKIYTDGACSGNPGPGGWGVYLSYKNHERKVYGSNINTTNNRMELTATIEALRLLKYSCK 73
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV G ++WIKKW +N W+TS+K+ V N+DLW +H+V +W++GH
Sbjct: 74 VELYTDSQYVQMGITKWIKKWIKNNWETSNKQLVCNVDLWQSLYTLIQKHQVSWHWVRGH 133
Query: 129 AGNQENEKVDRIAR----NAAVSFKN 150
+GN NE D++A A KN
Sbjct: 134 SGNIGNEIADKLATNGKIEAMKIVKN 159
>gi|56552497|ref|YP_163336.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|241762260|ref|ZP_04760342.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|260753840|ref|YP_003226733.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|6685891|sp|O69014|RNH_ZYMMO RecName: Full=Ribonuclease H; Short=RNase H
gi|3089615|gb|AAC70364.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|56544071|gb|AAV90225.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|241373307|gb|EER62926.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|258553203|gb|ACV76149.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 156
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 78/145 (53%), Positives = 102/145 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V TDGAC GNPG GGWG LLRY+G EK ISG E TTNNRMEL A I+AL+ LK P
Sbjct: 9 KIVMIATDGACKGNPGFGGWGALLRYQGHEKAISGSENPTTNNRMELQAVIEALSCLKKP 68
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C++ L TDS YV G ++WI WQ+NGW T+ KK VKN DLW + + + QH + W+K
Sbjct: 69 CQIELSTDSKYVMDGLTRWIHGWQKNGWLTAAKKPVKNADLWKQLLALTRQHDIAWKWVK 128
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ +NE+ D++A +AA++ +
Sbjct: 129 GHAGHPDNERADQLASDAAIALMQQ 153
>gi|241668313|ref|ZP_04755891.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 152
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 80/145 (55%), Positives = 96/145 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V AYTDGAC GNPG GGWG +L Y G +K I G EK+TTNNRMELMAAIK L ALK
Sbjct: 8 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGAEKDTTNNRMELMAAIKTLQALKRK 67
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + +YTDS Y+ G +QW+ W+ NGWKT+ KK VKN DLW + + +H V W+K
Sbjct: 68 CDITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQELDSLTTKHNVTWSWVK 127
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH+GNQ NEK D +A A K
Sbjct: 128 GHSGNQGNEKADELANKAIAELTGK 152
>gi|251794840|ref|YP_003009571.1| ribonuclease H [Paenibacillus sp. JDR-2]
gi|247542466|gb|ACS99484.1| Ribonuclease H [Paenibacillus sp. JDR-2]
Length = 144
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGWG +L Y K +SGGEK +TNNRME+ A I+AL LK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLFYGVHRKELSGGEKHSTNNRMEIQAVIEALNLLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCK +Y+DS+YV F + W +NGWK S K+ V+N DLW + +H+V+
Sbjct: 61 PCKAKIYSDSAYVVNCFQKGWIHGWLRNGWKNSKKEPVENQDLWKTLWDLMKRHQVEYIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D +AR A
Sbjct: 121 VKGHSDNEWNNRCDELAREAIKRL 144
>gi|261364219|ref|ZP_05977102.1| ribonuclease HI [Neisseria mucosa ATCC 25996]
gi|288567832|gb|EFC89392.1| ribonuclease HI [Neisseria mucosa ATCC 25996]
Length = 149
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 98/142 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V+ YTDGAC GNPG GGWGVL+RY+ EK + GGE ETTNNRMEL A I+ L ALK P
Sbjct: 3 DTVYLYTDGACKGNPGAGGWGVLMRYRNHEKELCGGEAETTNNRMELTAVIEGLKALKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V++ TDS YV G WI W++NGWKT+ KK VKN DLW + S +H++ W+K
Sbjct: 63 CRVVICTDSQYVKNGMEGWIHGWKKNGWKTAAKKPVKNDDLWKELDALSHKHELQWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ ENEK D +A A F
Sbjct: 123 GHAGHSENEKADALANQGAARF 144
>gi|46579103|ref|YP_009911.1| ribonuclease H [Desulfovibrio vulgaris str. Hildenborough]
gi|120603317|ref|YP_967717.1| ribonuclease H [Desulfovibrio vulgaris DP4]
gi|81830496|sp|Q72E89|RNH_DESVH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611368|sp|A1VFS4|RNH_DESVV RecName: Full=Ribonuclease H; Short=RNase H
gi|46448516|gb|AAS95170.1| ribonuclease HI [Desulfovibrio vulgaris str. Hildenborough]
gi|120563546|gb|ABM29290.1| RNase HI [Desulfovibrio vulgaris DP4]
gi|311232947|gb|ADP85801.1| ribonuclease H [Desulfovibrio vulgaris RCH1]
Length = 156
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 73/139 (52%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V +TDG+C GNPGPGGW ++R G EK +SGG TTNNRME++A ++AL AL+ PC
Sbjct: 5 DVTVFTDGSCLGNPGPGGWAAIMRCNGCEKELSGGFALTTNNRMEILAVLEALEALRDPC 64
Query: 68 KVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
KV L+TDS YV + WQ+NGWKT+DKK VKN DLW + V A+H V W++
Sbjct: 65 KVTLFTDSQYVRNAVEKKWLAGWQRNGWKTADKKPVKNRDLWERLVPLLAKHSVSFRWVR 124
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+G+ ENE+ D +AR A
Sbjct: 125 GHSGHPENERCDVLARAQA 143
>gi|113475276|ref|YP_721337.1| RNase HI [Trichodesmium erythraeum IMS101]
gi|123352453|sp|Q115G0|RNH_TRIEI RecName: Full=Ribonuclease H; Short=RNase H
gi|110166324|gb|ABG50864.1| RNase HI [Trichodesmium erythraeum IMS101]
Length = 157
Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K E+ YTDGACSGNPGPGG+G+++ + K + +SGG K TTNNRMELMA I L
Sbjct: 1 MTEKR-TEITIYTDGACSGNPGPGGYGIIILSEKKRQELSGGYKLTTNNRMELMAVIVGL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV-KNIDLWMKFVEASAQHK 119
L+ P V LYTDS Y+ ++ K + +KK N DLW K ++ ++H+
Sbjct: 60 EQLEIPSIVNLYTDSKYIVDAVTKGWAKRWRANSWKRNKKDKAMNPDLWGKLLDLCSKHQ 119
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V+ W++GH+GN ENE+ D++A A+
Sbjct: 120 VEFSWVRGHSGNIENERCDKLAVKASQKL 148
>gi|83855038|ref|ZP_00948568.1| ribonuclease HI [Sulfitobacter sp. NAS-14.1]
gi|83941561|ref|ZP_00954023.1| ribonuclease HI [Sulfitobacter sp. EE-36]
gi|83842881|gb|EAP82048.1| ribonuclease HI [Sulfitobacter sp. NAS-14.1]
gi|83847381|gb|EAP85256.1| ribonuclease HI [Sulfitobacter sp. EE-36]
Length = 151
Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats.
Identities = 80/151 (52%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG L+R KE+ + GGE TTNNRMELMAAI AL
Sbjct: 1 MTKLIAYTDGACSGNPGPGGWGALMRAMDGDKIVKERELKGGEPATTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G + WI W++NGWK + KK VKN +LW + A+A+H+V
Sbjct: 61 EALARPTEITIVTDSNYVKNGITGWIYGWKKNGWKNAAKKPVKNAELWQRLDAANARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR FK K
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKTK 151
>gi|167749784|ref|ZP_02421911.1| hypothetical protein EUBSIR_00751 [Eubacterium siraeum DSM 15702]
gi|167657267|gb|EDS01397.1| hypothetical protein EUBSIR_00751 [Eubacterium siraeum DSM 15702]
gi|291531562|emb|CBK97147.1| RNase HI [Eubacterium siraeum 70/3]
gi|291556330|emb|CBL33447.1| RNase HI [Eubacterium siraeum V10Sc8a]
Length = 149
Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats.
Identities = 76/137 (55%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V ++DGACSGNPGPGG+G +LR+ GKEK +SGGEK TTNNRMEL I+ALTALKYPC
Sbjct: 5 TVEIFSDGACSGNPGPGGYGAILRWNGKEKELSGGEKHTTNNRMELTGVIEALTALKYPC 64
Query: 68 KVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
KV+L TDS YV ++ W++ GWK SD N+DLW + + H V+ WIK
Sbjct: 65 KVILTTDSKYVVDSVTKGWVNGWKRRGWKKSDNTPALNVDLWERLLPLLDTHDVEFRWIK 124
Query: 127 GHAGNQENEKVDRIARN 143
GHAG+ ENE+ DR+A
Sbjct: 125 GHAGHPENERCDRLAVK 141
>gi|295104810|emb|CBL02354.1| RNase HI [Faecalibacterium prausnitzii SL3/3]
Length = 154
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 5/143 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALT 61
+++V YTDGACSGNPGPGGWG +LRY+ EK +SGG+ TTNNRMEL A I+AL
Sbjct: 1 MKQVEVYTDGACSGNPGPGGWGAVLRYRFDGKVYEKELSGGDASTTNNRMELTAFIEALR 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V L +DS YV G + K W++ GWK +D N DLW + +E A+HK+
Sbjct: 61 QLKEPCEVRLCSDSQYVINGLEKGWAKGWKRRGWKKADGSPALNPDLWAQALEQEARHKI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
W+KGHAG+ ENE+ D++A
Sbjct: 121 TYVWVKGHAGHPENERCDQLAVA 143
>gi|239905810|ref|YP_002952549.1| ribonuclease H [Desulfovibrio magneticus RS-1]
gi|239795674|dbj|BAH74663.1| ribonuclease H [Desulfovibrio magneticus RS-1]
Length = 162
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDGAC GNPGPGG+G +L + + SGG K TTNNRMEL+A I AL L P
Sbjct: 10 QNVIIFTDGACLGNPGPGGYGAVLLRGDERREFSGGRKLTTNNRMELLACIVALEELVEP 69
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V + TDS YVH + WQ+ GW S+KK VKN DLW++ + ++HKV W+
Sbjct: 70 SVVSITTDSRYVHDAIEKRWLASWQKKGWVNSEKKPVKNQDLWLRLLPLLSRHKVKFSWV 129
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH G+ ENE+ D +AR AA S
Sbjct: 130 RGHTGHPENERCDVLARQAANS 151
>gi|51894058|ref|YP_076749.1| ribonuclease H [Symbiobacterium thermophilum IAM 14863]
gi|81826015|sp|Q67K93|RNH_SYMTH RecName: Full=Ribonuclease H; Short=RNase H
gi|51857747|dbj|BAD41905.1| ribonuclease H [Symbiobacterium thermophilum IAM 14863]
Length = 147
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+REV YTDGACSGNPGPGGWG +L Y K +SG TTNNRME+ AAI+AL ALKY
Sbjct: 1 MREVIIYTDGACSGNPGPGGWGAVLLYGSHRKELSGFHPHTTNNRMEIQAAIEALRALKY 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV LY+DS+Y+ F Q + WQ+NGW S K+ V+N DLW + +EA+ H+V+
Sbjct: 61 PCKVKLYSDSAYLVNAFRQNWLRTWQRNGWVNSRKQPVENQDLWQELLEAARPHQVEWLK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
++GHA EN + D +AR A +
Sbjct: 121 VQGHADVAENNRCDELARAAIAA 143
>gi|254420376|ref|ZP_05034100.1| RNase H [Brevundimonas sp. BAL3]
gi|196186553|gb|EDX81529.1| RNase H [Brevundimonas sp. BAL3]
Length = 150
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 77/148 (52%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKG-KEKIISGGEKETTNNRMELMAAIKALTA 62
V +TDGAC GNPGPGGWG LL+ G EK + GGE TTNNRMELMAAI AL A
Sbjct: 2 SPTDHVIIHTDGACKGNPGPGGWGALLQTGGGHEKELWGGEPNTTNNRMELMAAIMALEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK PC+V L+TDS YV +G ++W++ W+ GW T+DKK VKN DLW + A +H V
Sbjct: 62 LKRPCRVELHTDSKYVMQGITEWMRGWKARGWLTADKKPVKNADLWQRLDAARLKHDVKW 121
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG++ NE+ D++A +
Sbjct: 122 RWVKGHAGHELNERADQLANRGVADLRR 149
>gi|253996735|ref|YP_003048799.1| Ribonuclease H [Methylotenera mobilis JLW8]
gi|253983414|gb|ACT48272.1| Ribonuclease H [Methylotenera mobilis JLW8]
Length = 156
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 90/143 (62%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGAC GNPGPGGWG + Y+G EK + GGE TTNNRMEL A I+AL ALK C
Sbjct: 10 VEIYADGACKGNPGPGGWGAWISYEGHEKELFGGELVTTNNRMELTAVIRALEALKRTCH 69
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
++TDS YV KG S+WI W+ W+T+DKK VKN DLW + QH V+ W+KGH
Sbjct: 70 AKVFTDSVYVQKGISEWIIGWKARNWRTADKKPVKNDDLWRVLDVLAQQHTVEWIWVKGH 129
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
AGN NE+ D +A K
Sbjct: 130 AGNVGNERADLLANKGVEQVLQK 152
>gi|83594384|ref|YP_428136.1| ribonuclease H [Rhodospirillum rubrum ATCC 11170]
gi|123725864|sp|Q2RPU6|RNH_RHORT RecName: Full=Ribonuclease H; Short=RNase H
gi|83577298|gb|ABC23849.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170]
Length = 166
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 94/137 (68%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG +LR+ EK + GGE TTNNRMELMA I+ L AL+ P
Sbjct: 13 RVDMFTDGACSGNPGPGGWGTILRWGDTEKELWGGETPTTNNRMELMAVIRGLEALRRPV 72
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V ++TDS YVH G + WI W++NGWKT+ KK VKN DLW + A H + W++G
Sbjct: 73 TVTIHTDSRYVHDGITGWIHGWKRNGWKTAAKKPVKNEDLWRRLDAALGTHDISWQWVRG 132
Query: 128 HAGNQENEKVDRIARNA 144
H+G+ ENE+ D +AR
Sbjct: 133 HSGHVENERADELARRG 149
>gi|152980654|ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marseille]
gi|187611377|sp|A6SXA4|RNH_JANMA RecName: Full=Ribonuclease H; Short=RNase H
gi|151280731|gb|ABR89141.1| ribonuclease HI [Janthinobacterium sp. Marseille]
Length = 144
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 71/141 (50%), Positives = 94/141 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ ++ Y+DGAC GNPG GGWG LL +EK I GGE +TTNNRMEL A I+AL L
Sbjct: 1 MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+++TDS YV KG S+WI W+ GWKT+ K VKN+DLW A A+HK++ W+
Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120
Query: 126 KGHAGNQENEKVDRIARNAAV 146
+GH G+ NE+ D +A
Sbjct: 121 RGHNGHAGNERADALANRGVE 141
>gi|315638038|ref|ZP_07893223.1| ribonuclease H [Campylobacter upsaliensis JV21]
gi|315481886|gb|EFU72505.1| ribonuclease H [Campylobacter upsaliensis JV21]
Length = 166
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 97/151 (64%), Gaps = 5/151 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K ++ V YTDG+C NPG GG+ ++RYK EK+ G E+ TTNNRMEL A IKAL
Sbjct: 10 MRLKTMKRVEIYTDGSCLNNPGFGGYAYIVRYKEHEKVGVGAEENTTNNRMELKAIIKAL 69
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V LYTDS+ + + ++W++ GW + K KN DLW +++ S +HK+
Sbjct: 70 EILKEPCEVYLYTDSNLMVQSINEWLE-----GWVKKNFKGRKNADLWREYLRVSKEHKI 124
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WIK H G++ENE+ D +AR AA+ + K
Sbjct: 125 RAIWIKAHNGHKENERCDTLAREAALQLQRK 155
>gi|114778791|ref|ZP_01453598.1| ribonuclease H [Mariprofundus ferrooxydans PV-1]
gi|114550922|gb|EAU53486.1| ribonuclease H [Mariprofundus ferrooxydans PV-1]
Length = 145
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 78/145 (53%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K + V A+TDGACSGNPGPGGWGVLLR EK I GGE ETTN +MEL AA++AL
Sbjct: 1 MTEKPV--VLAFTDGACSGNPGPGGWGVLLRMGKHEKEIYGGEAETTNQQMELQAAVEAL 58
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PCK+ + +DS YV +G ++WI W++ GWKT KK V N++ W + +A+H+V
Sbjct: 59 KALKQPCKITVISDSKYVVQGMNEWIHNWKKKGWKTVGKKPVSNLERWQELDTLAARHEV 118
Query: 121 DLYWIKGHAGNQENEKVDRIARNAA 145
W+KGHAG+ ENE+ D +AR
Sbjct: 119 QWQWVKGHAGHVENERADELARRGI 143
>gi|295101527|emb|CBK99072.1| RNase HI [Faecalibacterium prausnitzii L2-6]
Length = 154
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 5/143 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALT 61
+++V YTDGACSGNPGPGGWG +LRY+ EK +SGG+ TTNNRMEL A I+AL
Sbjct: 1 MKQVEVYTDGACSGNPGPGGWGAVLRYRFNGKVYEKELSGGDASTTNNRMELTAFIEALR 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V L +DS YV G + + W++ GWK SD N DLW + +E A+HK+
Sbjct: 61 QLKEPCEVRLCSDSQYVINGLEKGWARGWKRRGWKKSDGSPALNPDLWEQALEQEARHKL 120
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
W+KGHAG+ ENE+ D++A
Sbjct: 121 TYVWVKGHAGHPENERCDQLAVA 143
>gi|154251140|ref|YP_001411964.1| ribonuclease H [Parvibaculum lavamentivorans DS-1]
gi|187611384|sp|A7HQX4|RNH_PARL1 RecName: Full=Ribonuclease H; Short=RNase H
gi|154155090|gb|ABS62307.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1]
Length = 150
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 101/140 (72%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGWGVL+ YK +EK + GGE+ TTNNRMELMAAI+AL ALK
Sbjct: 7 VEIYTDGACSGNPGPGGWGVLMIYKDREKELCGGEQATTNNRMELMAAIQALEALKRDAH 66
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V ++TDS+YV G ++WI W++NGWK + K+ VKN +LW + A + H+V +W+KGH
Sbjct: 67 VRIHTDSNYVKDGITKWIHGWKKNGWKNAAKQPVKNAELWRRLEAAISTHQVSWHWVKGH 126
Query: 129 AGNQENEKVDRIARNAAVSF 148
+ + EN++ D +AR +
Sbjct: 127 SDHPENDRADALARQGMAPY 146
>gi|298528052|ref|ZP_07015456.1| ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
gi|298511704|gb|EFI35606.1| ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
Length = 152
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
M + +V YTDGAC GNPGPGG+ +L++ EK IS G TTNNRMELMA ++
Sbjct: 1 MSRNNNTQVVDIYTDGACLGNPGPGGYAAILKWGDLEKEISQGTPGTTNNRMELMAVLEG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L ALKYPC+V ++TDS Y+ + ++ +KWQ+NGWKT+ K+ VKN DLW + +H
Sbjct: 61 LKALKYPCRVRIHTDSQYIARAINEKWLEKWQRNGWKTAQKEDVKNRDLWEELAALLQEH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV+ W++GH+G++ NE+ D +AR AA +
Sbjct: 121 KVEFKWVRGHSGHEYNERCDSLARQAAQA 149
>gi|114321141|ref|YP_742824.1| ribonuclease H [Alkalilimnicola ehrlichii MLHE-1]
gi|122311282|sp|Q0A753|RNH_ALHEH RecName: Full=Ribonuclease H; Short=RNase H
gi|114227535|gb|ABI57334.1| ribonuclease H [Alkalilimnicola ehrlichii MLHE-1]
Length = 146
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/140 (51%), Positives = 98/140 (70%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
A+TDGAC GNPGPGGWGV+LRY+G E+ + GGE TTNNRMEL AAI+AL AL PC V
Sbjct: 3 AWTDGACRGNPGPGGWGVVLRYRGHERTLHGGEPHTTNNRMELTAAIQALEALDRPCVVH 62
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L TDS YV KG ++W+ W++ GW+T+ +K V N DLW + + +H+V +W++GH+G
Sbjct: 63 LTTDSQYVRKGITEWMAGWKRRGWRTAARKPVLNEDLWRRLDALNQRHEVHWHWVRGHSG 122
Query: 131 NQENEKVDRIARNAAVSFKN 150
+ ENE+ D +A +
Sbjct: 123 HAENEQADALANRGIDEMQE 142
>gi|21674430|ref|NP_662495.1| ribonuclease H [Chlorobium tepidum TLS]
gi|13899155|gb|AAG12419.1| Rnh [Chlorobaculum tepidum]
gi|21647614|gb|AAM72837.1| ribonuclease H [Chlorobium tepidum TLS]
Length = 146
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGACSGNPG GGWG LL Y K ISG + TTNNRMELMAAIK L ALK P
Sbjct: 3 KTITIYTDGACSGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LY+DS+Y+ ++ K+W +NGWKT+ KK V+NIDLW + ++ + H+V + +
Sbjct: 63 CRVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A
Sbjct: 123 KGHSDNPYNSRCDELARLAIKE 144
>gi|261392146|emb|CAX49652.1| ribonuclease HI (RNase HI) [Neisseria meningitidis 8013]
Length = 145
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/142 (52%), Positives = 93/142 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 KTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHA + ENE D +A A F
Sbjct: 123 GHARHAENEHADDLANRGAAQF 144
>gi|294507185|ref|YP_003571243.1| Ribonuclease HI [Salinibacter ruber M8]
gi|294343513|emb|CBH24291.1| Ribonuclease HI [Salinibacter ruber M8]
Length = 194
Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTA 62
+ EV YTDGACSGNPGPGGW +L +GGE TTNNRMEL AA++AL A
Sbjct: 47 MNEVTIYTDGACSGNPGPGGWAAILLPDDDSDATDPLTGGEPHTTNNRMELTAALEALRA 106
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L +V L+TDS Y+ K F++ WQ N W+TS VKN DLW +E + +H+VD
Sbjct: 107 LDDRSRVALHTDSEYLSKAFNEGWLDSWQDNNWQTSSNDDVKNQDLWKALLEEADRHEVD 166
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHA ++ N D +A A FK
Sbjct: 167 WVWVKGHADDELNIMADELAVAAMEQFK 194
>gi|196232988|ref|ZP_03131837.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
gi|196222966|gb|EDY17487.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
Length = 202
Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDGAC GNPGPGGW +L Y K ISGG TTNNRMEL AA++AL LK
Sbjct: 28 LKKVTIHTDGACEGNPGPGGWAAILEYGAVRKEISGGVIATTNNRMELTAALEALNRLKE 87
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L+TDS Y+ G ++WI W+ GWK K + A+++HKV+ +W+
Sbjct: 88 RCAVDLFTDSEYLRNGITKWIFGWKAKGWKKGTIKNIDLWQAL---DAAASRHKVEWHWV 144
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GHAG+ NE+ D +A F+
Sbjct: 145 RGHAGHPLNERCDVLAVQETQKFR 168
>gi|77917820|ref|YP_355635.1| RNase HI [Pelobacter carbinolicus DSM 2380]
gi|123743114|sp|Q3A827|RNH_PELCD RecName: Full=Ribonuclease H; Short=RNase H
gi|77543903|gb|ABA87465.1| RNase HI [Pelobacter carbinolicus DSM 2380]
Length = 152
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+S+ + V ++DGACSGNPGPGG+G LLR + + +SG + ETTNNRMEL+ AI L
Sbjct: 3 ESRSM--VEIFSDGACSGNPGPGGFGTLLRCGERVRELSGFDPETTNNRMELLGAIAGLE 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL PC+V L TDS YV KG ++WI WQ+ GWK S K+ V N DLW + + ++H+V
Sbjct: 61 ALTRPCRVRLTTDSQYVCKGMTEWIHGWQKKGWKNSKKEDVANRDLWERLLVLVSKHEVS 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+W++GHAG+ ENE+ D +AR A
Sbjct: 121 WHWVRGHAGHAENERCDELARQAI 144
>gi|57239452|ref|YP_180588.1| ribonuclease H [Ehrlichia ruminantium str. Welgevonden]
gi|57161531|emb|CAH58458.1| ribonuclease HI [Ehrlichia ruminantium str. Welgevonden]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 93/137 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGWG +L + EK I GG TTNNRMEL A ++AL L
Sbjct: 5 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDI 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + WIKKW+ NGW+T+D+ VKN++LW++ E HK+ YW+
Sbjct: 65 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADRLPVKNLELWLELDEIVKYHKITWYWV 124
Query: 126 KGHAGNQENEKVDRIAR 142
K H+GN NEK D +AR
Sbjct: 125 KAHSGNLYNEKADMLAR 141
>gi|229820601|ref|YP_002882127.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
gi|229566514|gb|ACQ80365.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/138 (53%), Positives = 92/138 (66%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDGAC GNPGPGGWGVLLR G+EK + GGE TTNNRMEL A I+ L LK C V+
Sbjct: 2 WTDGACKGNPGPGGWGVLLRSAGREKELWGGEAATTNNRMELTAVIEGLRTLKRDCVVVA 61
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ DS YV G + WI W++NGW+TSD+K VKN DLW A+H+V W+KGHAG+
Sbjct: 62 HVDSRYVMNGMTSWITGWKRNGWRTSDRKPVKNEDLWRALDAEVARHEVRWVWVKGHAGD 121
Query: 132 QENEKVDRIARNAAVSFK 149
NE+ D +A V +
Sbjct: 122 PGNERADALANRGIVELR 139
>gi|83815783|ref|YP_445310.1| RNase H [Salinibacter ruber DSM 13855]
gi|83757177|gb|ABC45290.1| RNase H [Salinibacter ruber DSM 13855]
Length = 194
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTA 62
+ EV YTDGACSGNPGPGGW +L +GGE TTNNRMEL AA++AL A
Sbjct: 47 MNEVTIYTDGACSGNPGPGGWAAILLPDDDSDATDPLTGGEPHTTNNRMELTAALEALRA 106
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L +V L+TDS Y+ K F++ WQ N W+TS VKN DLW +E + +H+VD
Sbjct: 107 LDDRSRVALHTDSEYLSKAFNEGWLDSWQDNNWQTSSNDDVKNQDLWKALLEEADRHEVD 166
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHA ++ N D +A A +K
Sbjct: 167 WVWVKGHADDELNIMADELAVAAMEQYK 194
>gi|78357981|ref|YP_389430.1| ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
gi|123551688|sp|Q30X61|RNH_DESDG RecName: Full=Ribonuclease H; Short=RNase H
gi|78220386|gb|ABB39735.1| RNase HI [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+C GNPGPGGW +LRY G +K + GG TTNNRME++A I+ L AL+
Sbjct: 1 MKQVDIFTDGSCLGNPGPGGWAAVLRYAGTQKELGGGFSGTTNNRMEILAVIEGLEALQE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LYTDS YV + WQ+NGWKT+ +K VKN DLW++ + A+H V +W
Sbjct: 61 PCTVNLYTDSQYVRNAVEKKWLDSWQRNGWKTAARKPVKNKDLWLRLLPLLARHTVKFHW 120
Query: 125 IKGHAGNQENEKVDRIAR 142
++GH+G+ ENE D IAR
Sbjct: 121 VRGHSGHPENELCDTIAR 138
>gi|221134301|ref|ZP_03560606.1| ribonuclease H [Glaciecola sp. HTCC2999]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/135 (54%), Positives = 97/135 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV +TDG+C GNPGPGG+G ++ Y K I+ G TTNNRMEL+A IKAL+ LK
Sbjct: 1 MQEVQIFTDGSCLGNPGPGGYGAIMVYGKHRKEIAEGYFATTNNRMELLAPIKALSLLKK 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V+L TDS YV G +QWI W++NGWKTS+K+ VKN DLWM EA H +D W+
Sbjct: 61 PCRVILTTDSQYVKNGINQWIHNWRKNGWKTSNKQPVKNADLWMALDEAVKGHHIDWRWV 120
Query: 126 KGHAGNQENEKVDRI 140
KGH+G+ ENE+ D +
Sbjct: 121 KGHSGHPENERCDEL 135
>gi|18466774|ref|NP_569581.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16506090|emb|CAD09976.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
Length = 202
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L+ V ++DG+C NPG PGG+G++L+Y+G+E+ +S G TTNNRME+M A+ AL L
Sbjct: 41 QLKTVKVFSDGSCLKNPGGPGGYGIVLQYRGEERELSEGFHSTTNNRMEMMGALIALERL 100
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KYPC V+L++DS Y+ G + W+K W++NGW TS+KK VKN+DLW + A+++H V
Sbjct: 101 KYPCNVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKNVDLWKRLDAAASRHNVRWK 160
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG++ENE DR+A+ AA S
Sbjct: 161 WVKGHAGHRENEMCDRLAKIAAYSA 185
>gi|329115651|ref|ZP_08244373.1| Ribonuclease H [Acetobacter pomorum DM001]
gi|326695079|gb|EGE46798.1| Ribonuclease H [Acetobacter pomorum DM001]
Length = 166
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 98/145 (67%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
EV +TDG C NPGPGGWGVLLR KG E+ +SGGE+ETTNNRMEL AA +AL AL PC
Sbjct: 19 EVEIWTDGGCRPNPGPGGWGVLLRCKGVERELSGGERETTNNRMELTAAAEALEALTRPC 78
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS YV G ++W W + W+ + V N+DLW + ++ S +H+V +W+KG
Sbjct: 79 VVNLHTDSEYVRNGITRWHTGWVRRNWRNASGDPVANMDLWRRLLDVSKRHEVSWHWVKG 138
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
H+G ENE+VD++A A + +
Sbjct: 139 HSGVPENERVDQLATEAREKIEQSL 163
>gi|332969828|gb|EGK08837.1| ribonuclease HI [Kingella kingae ATCC 23330]
Length = 147
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/138 (53%), Positives = 91/138 (65%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ +TDGAC GNPG GGWGVLLRY EK + GGE TTNNRMELMA + L AL
Sbjct: 3 QTVYLFTDGACKGNPGAGGWGVLLRYGAHEKELFGGEANTTNNRMELMAVLSGLQALNRA 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS YV G WI+ W++NGWKT+ K+ VKN DLW + A+H V W+K
Sbjct: 63 CTVEICTDSQYVKNGMESWIRGWKKNGWKTASKQAVKNEDLWRQLDAEVAKHTVRWTWVK 122
Query: 127 GHAGNQENEKVDRIARNA 144
GHAG+ ENE+ D +A
Sbjct: 123 GHAGHAENERADELANKG 140
>gi|229815603|ref|ZP_04445930.1| hypothetical protein COLINT_02654 [Collinsella intestinalis DSM
13280]
gi|229808833|gb|EEP44608.1| hypothetical protein COLINT_02654 [Collinsella intestinalis DSM
13280]
Length = 162
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 93/145 (64%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V YTDG+ GNPGPGG+G +LRY K +S G TTNNRMEL+ I AL A
Sbjct: 2 KVIVYTDGSSRGNPGPGGYGAVLRYTAPSGKLHTLELSRGYDRTTNNRMELLGVISALEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L PC+V +++DS YV F+Q + W + GWKTS KK VKN+DLW + + A H V
Sbjct: 62 LNRPCEVEVHSDSQYVCNAFNQHWVEGWIRRGWKTSQKKPVKNVDLWKRLLAAKEPHDVT 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG++ NE+ D++A AA
Sbjct: 122 FHWVKGHAGHEFNERCDQLATAAAD 146
>gi|49475240|ref|YP_033281.1| ribonuclease HI [Bartonella henselae str. Houston-1]
gi|81827738|sp|Q6G4C3|RNH_BARHE RecName: Full=Ribonuclease H; Short=RNase H
gi|49238045|emb|CAF27252.1| Ribonuclease HI [Bartonella henselae str. Houston-1]
Length = 155
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 97/144 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG +LR+ G E+ + GGE +TTNN+MELMAA+ AL ALK
Sbjct: 6 KVVEIYTDGACSGNPGVGGWGAILRWNGHERELYGGEVQTTNNQMELMAALCALKALKES 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V LYTDS YV G S W+K W++N W+T KK VKN +LW + H + +WIK
Sbjct: 66 CSVDLYTDSVYVRNGISLWLKGWKKNNWQTVSKKPVKNKELWQALEGVCSFHTIRWHWIK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ +NE+ D +AR A ++
Sbjct: 126 GHTGHPDNERADALARKAIAEYRE 149
>gi|28199105|ref|NP_779419.1| ribonuclease H [Xylella fastidiosa Temecula1]
gi|182681832|ref|YP_001829992.1| ribonuclease H [Xylella fastidiosa M23]
gi|32129968|sp|Q87C76|RNH_XYLFT RecName: Full=Ribonuclease HI; Short=RNase HI
gi|28057203|gb|AAO29068.1| ribonuclease H [Xylella fastidiosa Temecula1]
gi|182631942|gb|ACB92718.1| Ribonuclease H [Xylella fastidiosa M23]
gi|307578083|gb|ADN62052.1| ribonuclease H [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 150
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 105/147 (71%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ ++AYTDG+C GNPGPGGW VLLRYK EK + GGE +TTNNRMELMAAI AL L
Sbjct: 1 MKLINAYTDGSCLGNPGPGGWAVLLRYKNNEKELVGGELDTTNNRMELMAAIMALERLSE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS YV +G ++W+ W + GWKT+ VKN DLW + A+ +H ++ W+
Sbjct: 61 PCQIKLHTDSQYVRQGITEWMSGWVRRGWKTAAGDPVKNRDLWERLCAATQRHMIEWCWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
K H G+ +NE+VD +AR A++ ++ +
Sbjct: 121 KAHNGDSDNERVDVLARGQAMAQRSTV 147
>gi|218249079|ref|YP_002374450.1| Ribonuclease H [Cyanothece sp. PCC 8801]
gi|257062166|ref|YP_003140054.1| ribonuclease H [Cyanothece sp. PCC 8802]
gi|226736828|sp|B7JVG1|RNH_CYAP8 RecName: Full=Ribonuclease H; Short=RNase H
gi|218169557|gb|ACK68294.1| Ribonuclease H [Cyanothece sp. PCC 8801]
gi|256592332|gb|ACV03219.1| Ribonuclease H [Cyanothece sp. PCC 8802]
Length = 163
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ ++V YTDGACSGNPG GG+G +L Y K +SGG + TTNNRME+MAAI L
Sbjct: 1 MNDSP-KKVLIYTDGACSGNPGSGGYGTVLIYNNHRKELSGGFRLTTNNRMEMMAAIVGL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHK 119
L C V LYTDS Y+ ++ K + + K + ++ +QH+
Sbjct: 60 ETLTIKCAVTLYTDSRYLVDAITKGWAKKWKANGWKRNAKENAKNPDLWEKLLDLCSQHE 119
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
VD W+KGHAG+QENE DR+A A+
Sbjct: 120 VDFVWVKGHAGHQENEYCDRLAVRASQQ 147
>gi|57506126|ref|ZP_00372048.1| ribonuclease HI [Campylobacter upsaliensis RM3195]
gi|57015610|gb|EAL52402.1| ribonuclease HI [Campylobacter upsaliensis RM3195]
Length = 190
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 97/151 (64%), Gaps = 5/151 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K ++ V YTDG+C NPG GG+ ++RYK EK+ G E+ TTNNRMEL A IKAL
Sbjct: 34 MRLKTMKCVEIYTDGSCLNNPGFGGYAYIVRYKEHEKVGVGAEENTTNNRMELKAIIKAL 93
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V LYTDS+ + + ++W++ GW + K KN DLW +++ S +HK+
Sbjct: 94 EILKEPCEVYLYTDSNLMVQSINEWLE-----GWVKKNFKGRKNADLWREYLRVSKEHKI 148
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WIK H G++ENE+ D +AR AA+ + K
Sbjct: 149 RAIWIKAHNGHKENERCDTLAREAALQLQRK 179
>gi|171909682|ref|ZP_02925152.1| ribonuclease H [Verrucomicrobium spinosum DSM 4136]
Length = 168
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 99/146 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V +TDG C GNPG GGW +L G+ K ISGGE TTNNRMEL AAI+AL+ LK
Sbjct: 5 LPQVIIHTDGGCLGNPGVGGWAAVLESCGRRKEISGGEPATTNNRMELRAAIEALSHLKK 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V ++TDS YV G ++W+ W++NGWKT+ K+ VKN DLW A+ +H+V +W+
Sbjct: 65 TCAVEMHTDSQYVRNGITKWLAGWKKNGWKTASKQRVKNEDLWSTLDAAAQRHQVSWHWV 124
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ +NE+ D++ A + K +
Sbjct: 125 KGHAGHDDNERCDQLCGEAMEAVKKQ 150
>gi|189346165|ref|YP_001942694.1| ribonuclease H [Chlorobium limicola DSM 245]
gi|238692202|sp|B3EH35|RNH_CHLL2 RecName: Full=Ribonuclease H; Short=RNase H
gi|189340312|gb|ACD89715.1| Ribonuclease H [Chlorobium limicola DSM 245]
Length = 146
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPG GGWG L+ Y + +SG E TTNNRMEL AAI+ L ALK P
Sbjct: 3 KRVTIYTDGACSGNPGRGGWGALMMYGTVNRELSGYEPATTNNRMELTAAIEGLDALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DS+Y+ +Q K TS KK+V+NIDLW K ++ H+V + +
Sbjct: 63 CVVDLYSDSAYLVNALNQGWLKRWTTNNWTTSAKKSVENIDLWKKILKLVTLHQVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A +
Sbjct: 123 KGHSDNPFNNRCDELARQAIKN 144
>gi|30248166|ref|NP_840236.1| ribonuclease HI protein [Nitrosomonas europaea ATCC 19718]
gi|81838786|sp|Q82XV8|RNH_NITEU RecName: Full=Ribonuclease H; Short=RNase H
gi|30180051|emb|CAD84051.1| probable ribonuclease hi protein [Nitrosomonas europaea ATCC 19718]
Length = 161
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 6/147 (4%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI------KAL 60
+ V +TDGAC GNPG GGWGV L++ G+ + GGE TTNNRMEL+AAI ++L
Sbjct: 8 KLVEIFTDGACKGNPGIGGWGVCLKFDGEVREFFGGEPVTTNNRMELLAAIRALQALESL 67
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V L+TDS YV KG S+W+ W++ GW T+DKK VKN LW + + S +++V
Sbjct: 68 PDTGQSLRVQLHTDSQYVQKGISEWVHSWKKRGWLTADKKPVKNEALWKELDQLSRRYQV 127
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+ +W++GH G+ NE+ D +A VS
Sbjct: 128 EWFWVRGHNGHDGNERADMLANRGVVS 154
>gi|103486622|ref|YP_616183.1| ribonuclease H [Sphingopyxis alaskensis RB2256]
gi|98976699|gb|ABF52850.1| ribonuclease H [Sphingopyxis alaskensis RB2256]
Length = 150
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 82/142 (57%), Positives = 104/142 (73%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R V TDGAC GNPGPGGWG +LR+ K +SGGE +TTNNRMELMAAI+AL ALK P
Sbjct: 5 RTVIVATDGACKGNPGPGGWGAVLRWGEVVKTLSGGEADTTNNRMELMAAIEALAALKRP 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L TDS YV G ++WI WQ+NGWKT+ KK V N DLW + ++ +A+HKV+ W+K
Sbjct: 65 CNVELSTDSVYVRDGITKWIFGWQKNGWKTAAKKPVANADLWQRLIKEAARHKVEWLWVK 124
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHAG+ +NE D++A +AA+
Sbjct: 125 GHAGHGDNELADQLASDAALKM 146
>gi|153874991|ref|ZP_02002985.1| ribonuclease HI [Beggiatoa sp. PS]
gi|152068544|gb|EDN67014.1| ribonuclease HI [Beggiatoa sp. PS]
Length = 148
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 76/139 (54%), Positives = 97/139 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V A+TDGAC GNPGPGGWGVLLR + +EK + GGE TTNNRMELMAAI AL +L
Sbjct: 6 VEAFTDGACRGNPGPGGWGVLLRCQNEEKQLYGGELNTTNNRMELMAAIMALESLTRSNH 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ L TDS YV KG ++WI+ W + GWK ++ + VKNIDLW + + +H+VD WIKGH
Sbjct: 66 IRLTTDSEYVKKGITEWIENWIKRGWKRANNEPVKNIDLWQRLHAVTQKHQVDWQWIKGH 125
Query: 129 AGNQENEKVDRIARNAAVS 147
+G+ ENE+ D +A S
Sbjct: 126 SGHSENEQADSLANQGIDS 144
>gi|284051842|ref|ZP_06382052.1| Ribonuclease H [Arthrospira platensis str. Paraca]
gi|291567761|dbj|BAI90033.1| ribonuclease H [Arthrospira platensis NIES-39]
Length = 169
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGACSGNPG GG+G +L K +SGG + TTNNRME+M AI AL ALK+PC
Sbjct: 7 KVTIYTDGACSGNPGKGGYGAVLMCGSHRKELSGGFRLTTNNRMEMMGAIAALQALKFPC 66
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYWIK 126
V LY+DS Y+ +Q K Q +K + +H+V W+K
Sbjct: 67 CVTLYSDSKYLVDAMTQGWAKRWQKNGWRRSQKEWAKNPDLWAQLLALCEEHQVRFVWVK 126
Query: 127 GHAGNQENEKVDRIARNA 144
GHAG++ENE DR+A A
Sbjct: 127 GHAGDRENEICDRLAVEA 144
>gi|313113467|ref|ZP_07799056.1| ribonuclease HI [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624194|gb|EFQ07560.1| ribonuclease HI [Faecalibacterium cf. prausnitzii KLE1255]
Length = 154
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 5/143 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALT 61
+++V YTDGACSGNPGPGGWG +LRY+ EK +SGG+ TTNNRMEL A I+AL
Sbjct: 1 MKQVEVYTDGACSGNPGPGGWGAVLRYRFNGKVYEKELSGGDDSTTNNRMELTAFIEALR 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V L +DS YV G + K WQ+ GWK +D N DLW + +E A+HK+
Sbjct: 61 QLKEPCEVRLCSDSQYVINGLQKGWAKNWQRRGWKKADGSPALNPDLWAQALEQEARHKI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
W+KGHAG+ ENE+ D++A
Sbjct: 121 TYVWVKGHAGHPENERCDQLAVA 143
>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ADP1]
gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter sp. ADP1]
Length = 450
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DGAC GNPG GGWG + + E + GGE ETTNNRMEL AAI+ +
Sbjct: 3 QTITLYVDGACKGNPGLGGWGAYVITEQGEHKLCGGEAETTNNRMELTAAIEGIRFCPQD 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++TDS+YV +G ++WI W+ + K VKN DLW + +++ WIK
Sbjct: 63 ASLIIWTDSNYVKQGITEWIHGWK-----KKNWKDVKNPDLWQILDQLCQGRQIEWNWIK 117
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG+ NE D +A A ++
Sbjct: 118 GHAGHAGNEMADELANLGASQTAAQL 143
>gi|149927490|ref|ZP_01915744.1| ribonuclease H [Limnobacter sp. MED105]
gi|149823763|gb|EDM82989.1| ribonuclease H [Limnobacter sp. MED105]
Length = 141
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 91/140 (65%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC GNPGPGGWGV L+ K + GGE TTNNRMEL A I+ L ALK C + +
Sbjct: 2 YADGACKGNPGPGGWGVFLQSGDHAKELCGGELNTTNNRMELTAVIEGLNALKKRCSIDV 61
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
YTDS YV KG +W+ KW+ NGWKTSDKK VKN DLW EAS +H V +W+KGH+GN
Sbjct: 62 YTDSQYVRKGVLEWMPKWKMNGWKTSDKKPVKNADLWQILDEASVRHLVRWHWVKGHSGN 121
Query: 132 QENEKVDRIARNAAVSFKNK 151
NEK D +A +
Sbjct: 122 PGNEKADALANLGVEKAMKQ 141
>gi|149194955|ref|ZP_01872048.1| ribonuclease H [Caminibacter mediatlanticus TB-2]
gi|149134876|gb|EDM23359.1| ribonuclease H [Caminibacter mediatlanticus TB-2]
Length = 143
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDG+ GNPGPGGW +LRYKGKEKIISGGE+ TTNNRMEL A I++L LK
Sbjct: 1 MKKIEIYTDGSSLGNPGPGGWCAILRYKGKEKIISGGEEYTTNNRMELKAVIESLKILKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY DS+YV KG ++W+ W + K VKN DLW +F+ S HK+++ WI
Sbjct: 61 PCEIELYADSTYVLKGINEWLS-----NWVRKNFKNVKNEDLWREFLRYSKPHKINVNWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ ENE+ D+IA++ A+ K+
Sbjct: 116 KGHSGHIENERCDKIAKDEALRRKS 140
>gi|296129039|ref|YP_003636289.1| ribonuclease H [Cellulomonas flavigena DSM 20109]
gi|296020854|gb|ADG74090.1| ribonuclease H [Cellulomonas flavigena DSM 20109]
Length = 157
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 91/144 (63%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPG GGWG +R+ +E+ + GGE TTNNRMEL A I+ L ALK PC+
Sbjct: 13 VEMWTDGACKGNPGVGGWGAWMRFGDQERELWGGEAATTNNRMELSAVIEGLRALKRPCR 72
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+ DS+YV G +W+ W++NGW+T DKK VKN +LW +H V W+KGH
Sbjct: 73 VTLHVDSTYVMNGLQKWLPNWKRNGWRTGDKKPVKNQELWQALDTEVQRHHVTWVWVKGH 132
Query: 129 AGNQENEKVDRIARNAAVSFKNKI 152
AG+ NE+ D +A + +
Sbjct: 133 AGDPGNERADALANRGVDDVRAGV 156
>gi|145220201|ref|YP_001130910.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265]
gi|187611394|sp|A4SFZ9|RNH_PROVI RecName: Full=Ribonuclease H; Short=RNase H
gi|145206365|gb|ABP37408.1| RNase HI [Chlorobium phaeovibrioides DSM 265]
Length = 146
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V YTDGACSGNPGPGGWG +L Y + ISGG TTNNRMEL AAI+AL ALK P
Sbjct: 3 KKVTIYTDGACSGNPGPGGWGAMLMYGKTVREISGGAPATTNNRMELSAAIEALQALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQ-NGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSY+ ++ K N WKT+ KKTV+NIDLW K +E + +H+V + +
Sbjct: 63 CTVDLYSDSSYLVNAINEGWLKRWTANRWKTAAKKTVENIDLWQKILELTDRHRVRFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A
Sbjct: 123 KGHSDNPYNNRCDELARLAVRK 144
>gi|224372161|ref|YP_002606533.1| RNase H [Nautilia profundicola AmH]
gi|223589735|gb|ACM93471.1| RNase H [Nautilia profundicola AmH]
Length = 180
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 103/145 (71%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDG+ GNPGPGGW +LRYKG EK ISGGE+ TTNNRMEL A I+AL LK
Sbjct: 41 MKKIEIYTDGSSLGNPGPGGWCSVLRYKGHEKTISGGEELTTNNRMELKAVIEALKLLKE 100
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY DS+YV KG S+W++ W++ K VKN+DLW +F+E S H +++ W+
Sbjct: 101 PCEIDLYADSTYVLKGISEWLENWKKKN-----FKNVKNVDLWQEFIEISKPHIINVNWV 155
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G++ENE D+IA+ A K
Sbjct: 156 KGHSGHRENEICDKIAKEEAAKRKK 180
>gi|289578356|ref|YP_003476983.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
gi|289528069|gb|ADD02421.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
Length = 152
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGW +L YK K ISG E+ TTNNRMEL A I+AL ALK PCK
Sbjct: 8 VEIYTDGACSGNPGPGGWAAVLLYKEARKEISGFEENTTNNRMELKAVIEALKALKRPCK 67
Query: 69 VLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LY+DSSYV F + +KWQ+N W SDK V+N +LW + +E S +H+++ +KG
Sbjct: 68 VNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELLEVSKRHQINWIKVKG 127
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HAG++ N DR+A K+
Sbjct: 128 HAGDEFNNLCDRLATEQIKRNTKKL 152
>gi|58579428|ref|YP_197640.1| ribonuclease H [Ehrlichia ruminantium str. Welgevonden]
gi|58418054|emb|CAI27258.1| Ribonuclease H [Ehrlichia ruminantium str. Welgevonden]
Length = 153
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 93/137 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGWG +L + EK I GG TTNNRMEL A ++AL L
Sbjct: 12 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDI 71
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + WIKKW+ NGW+T+D+ VKN++LW++ E HK+ YW+
Sbjct: 72 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADRLPVKNLELWLELDEIVKYHKITWYWV 131
Query: 126 KGHAGNQENEKVDRIAR 142
K H+GN NEK D +AR
Sbjct: 132 KAHSGNLYNEKADMLAR 148
>gi|110678672|ref|YP_681679.1| ribonuclease H [Roseobacter denitrificans OCh 114]
gi|123065766|sp|Q16AK0|RNH_ROSDO RecName: Full=Ribonuclease H; Short=RNase H
gi|109454788|gb|ABG30993.1| RNase H [Roseobacter denitrificans OCh 114]
Length = 150
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVLL+ K KE+ + GGE TTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGVLLQAKEGDRLVKERALKGGEAHTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L + + TDS+YV G + WI W++NGWK + KK V N +LW + EA+A+H V
Sbjct: 61 ESLSRASTITVVTDSNYVKNGITGWIHGWKRNGWKNAAKKPVANAELWQRLDEANARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWKWVKGHAGHAENERADELARAGMAPFK 149
>gi|163733876|ref|ZP_02141318.1| RNase H [Roseobacter litoralis Och 149]
gi|161392987|gb|EDQ17314.1| RNase H [Roseobacter litoralis Och 149]
Length = 150
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E+ AYTDGACSGNPGPGGWGVLL+ K KE+ + GGE TTNNRMEL+AAI AL
Sbjct: 1 MPELFAYTDGACSGNPGPGGWGVLLQAKEGDRLVKERALKGGEAHTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+L + + TDS+YV G + WI W++NGWK + KK V N +LW + EA+A+H V
Sbjct: 61 ESLSRASTITIVTDSNYVKNGITGWIHGWKRNGWKNAAKKPVANAELWQRLDEANARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWKWVKGHAGHAENERADELARAGMAPFK 149
>gi|83589483|ref|YP_429492.1| ribonuclease H [Moorella thermoacetica ATCC 39073]
gi|123524925|sp|Q2RKU0|RNH_MOOTA RecName: Full=Ribonuclease H; Short=RNase H
gi|83572397|gb|ABC18949.1| RNase HI [Moorella thermoacetica ATCC 39073]
Length = 152
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/135 (50%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGWG +L Y K K +SG E TTN RME+ AAI AL LK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLIYGDKRKELSGAEPSTTNQRMEITAAIAALRVLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS+Y+ F Q +W++NGW T K+ V+N DLW + ++ +++H+V+
Sbjct: 61 PCRVHLYSDSAYLVNAFRQGWLARWERNGWLTVKKQPVENQDLWRELLQVASRHQVEWLK 120
Query: 125 IKGHAGNQENEKVDR 139
+KGH+ N EN + D
Sbjct: 121 VKGHSDNPENNRCDE 135
>gi|310815108|ref|YP_003963072.1| RNase H [Ketogulonicigenium vulgare Y25]
gi|308753843|gb|ADO41772.1| RNase H [Ketogulonicigenium vulgare Y25]
Length = 154
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ E +TDGACSGNPGPGGWGVL++ + KE+ + GGE TTNNRMEL+AAI AL
Sbjct: 1 MPEFICFTDGACSGNPGPGGWGVLMQAREGGAVVKERPLCGGEAMTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + TDS YV G W+ W++NGW+TS K VKN DLW + +H+V
Sbjct: 61 ENFTRSSTITIVTDSVYVKDGIGAWLFNWKRNGWRTSQGKPVKNDDLWRRLDAEVQRHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWKWVKGHAGHPENERADELARQGMAPFK 149
>gi|78189700|ref|YP_380038.1| ribonuclease H [Chlorobium chlorochromatii CaD3]
gi|123579317|sp|Q3APT0|RNH_CHLCH RecName: Full=Ribonuclease H; Short=RNase H
gi|78171899|gb|ABB28995.1| RNase HI [Chlorobium chlorochromatii CaD3]
Length = 146
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V YTDGACSGNPGPGGWG LL + + +SG TTNNRMEL AAI+AL LK P
Sbjct: 3 KQVTIYTDGACSGNPGPGGWGALLMFGSITREVSGSSPATTNNRMELGAAIEALALLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSY+ + ++WQ+N W+T+ KK+V+NIDLW K ++ H+V + +
Sbjct: 63 CLVDLYSDSSYLVNAINNGWLQRWQRNSWQTAAKKSVENIDLWQKLIKLLKVHEVRFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D++AR A
Sbjct: 123 KGHSDNAYNNRCDQLAREAIKK 144
>gi|254673298|emb|CBA08416.1| Ribonuclease HI [Neisseria meningitidis alpha275]
Length = 142
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/139 (53%), Positives = 93/139 (66%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGVL+RY EK + GGE +TTNNRMEL A I+ L +LK
Sbjct: 3 QTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRH 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS YV G WI W++NGWKT+ K+ VKN DLW + +H+V W+K
Sbjct: 63 CTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVK 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG+ ENE D +A A
Sbjct: 123 GHAGHAENEHADDLANRGA 141
>gi|319957799|ref|YP_004169062.1| rnase hi [Nitratifractor salsuginis DSM 16511]
gi|319420203|gb|ADV47313.1| RNase HI [Nitratifractor salsuginis DSM 16511]
Length = 152
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M S L+ V Y+DG+ GNPGPGG+ +L Y+GK K GGE TTNNRMEL A I+ L
Sbjct: 1 MSSNSLKTVTLYSDGSSLGNPGPGGYAGILEYRGKRKEYVGGEAMTTNNRMELRAVIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC V + TDSSYV K ++W+ W G+K LW +++E S H+V
Sbjct: 61 KLLKEPCNVEVVTDSSYVAKAINEWLPGWIARGFKKVKNPD-----LWQEYLEVSKPHRV 115
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W++GH G+ ENE+ D +AR+ A K
Sbjct: 116 HATWVRGHNGHPENERCDELARSEAERQK 144
>gi|187611436|sp|Q5FG88|RNH_EHRRG RecName: Full=Ribonuclease H; Short=RNase H
Length = 146
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 93/137 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGWG +L + EK I GG TTNNRMEL A ++AL L
Sbjct: 5 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDV 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + WIKKW+ NGW+T+DK VKN++LW++ + HK+ YW+
Sbjct: 65 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADKLPVKNLELWLELDKIVKYHKITWYWV 124
Query: 126 KGHAGNQENEKVDRIAR 142
K H+GN NEK D +AR
Sbjct: 125 KAHSGNLYNEKADMLAR 141
>gi|110597045|ref|ZP_01385334.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
gi|110341236|gb|EAT59701.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
Length = 146
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPGPGGWG LL Y + +SG TTNNRMEL AAI+AL ALK P
Sbjct: 3 KKLIIYTDGACSGNPGPGGWGALLMYGPSTRELSGYSPATTNNRMELTAAIEALEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LY+DSSY+ ++ K+W N WKT+ KK V+N DLW K ++ H+V + +
Sbjct: 63 CRVDLYSDSSYLVNAINEGWLKRWVVNNWKTAAKKNVENPDLWQKILKLIRLHEVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+ N N + D +AR A
Sbjct: 123 KGHSDNPYNNRCDVLAREAIKKH 145
>gi|84515151|ref|ZP_01002514.1| ribonuclease H [Loktanella vestfoldensis SKA53]
gi|84511310|gb|EAQ07764.1| ribonuclease H [Loktanella vestfoldensis SKA53]
Length = 150
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWG LL + KE+ +SGGE +TTNNRMEL+AAI AL
Sbjct: 1 MADLYAYTDGACSGNPGPGGWGALLIARDGDKVVKERALSGGEADTTNNRMELLAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L + + TDS+YV G + WI W++ GWKTS K VKN DLW + A AQH+V
Sbjct: 61 ETLGRATAITIVTDSAYVKDGITSWIHGWKRRGWKTSANKPVKNEDLWRRLDSAVAQHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR +K
Sbjct: 121 RWEWVKGHAGHVENERADELARAGMAPYK 149
>gi|146276211|ref|YP_001166370.1| ribonuclease H [Rhodobacter sphaeroides ATCC 17025]
gi|187611397|sp|A4WNV1|RNH_RHOS5 RecName: Full=Ribonuclease H; Short=RNase H
gi|145554452|gb|ABP69065.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025]
Length = 151
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 104/151 (68%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVL+ + KE+ + GGE TTNNRMELMAAI AL
Sbjct: 1 MSDLFAYTDGACSGNPGPGGWGVLMLAREGEAVVKERTLQGGEALTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G + WI W++NGWKT+D+K VKN +LW + A +HKV
Sbjct: 61 EALTRPTEITIVTDSAYVKNGVTTWIHGWKRNGWKTADRKPVKNAELWERLDAAQQRHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WIKGHAG+ ENE+ D +AR FK +
Sbjct: 121 VWRWIKGHAGHAENERADELARAGMAPFKTR 151
>gi|291613977|ref|YP_003524134.1| ribonuclease H [Sideroxydans lithotrophicus ES-1]
gi|291584089|gb|ADE11747.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1]
Length = 154
Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats.
Identities = 78/144 (54%), Positives = 97/144 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGAC GNPG GGWG LLR KGKE + GGE TTNNRMEL+AAI AL ALK C+
Sbjct: 8 VEIFTDGACKGNPGLGGWGALLRVKGKELELCGGEAHTTNNRMELLAAISALEALKRQCR 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+TDS YV +G S+W+ W+ GWKT+DKK VKN DLW + + QH V+ W+KGH
Sbjct: 68 VRLHTDSKYVQQGISEWVHNWKLRGWKTADKKPVKNEDLWRRLDTLAEQHHVEWVWVKGH 127
Query: 129 AGNQENEKVDRIARNAAVSFKNKI 152
AG+ NE+ D +A + +
Sbjct: 128 AGHDGNERADALANRGCADVEKHL 151
>gi|125973191|ref|YP_001037101.1| ribonuclease H [Clostridium thermocellum ATCC 27405]
gi|256003995|ref|ZP_05428981.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281417390|ref|ZP_06248410.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|187611364|sp|A3DD79|RNH_CLOTH RecName: Full=Ribonuclease H; Short=RNase H
gi|125713416|gb|ABN51908.1| RNase HI [Clostridium thermocellum ATCC 27405]
gi|255992123|gb|EEU02219.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281408792|gb|EFB39050.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|316940578|gb|ADU74612.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
Length = 147
Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPG GGWG +L Y EK +SG EK+TTNNRMEL+AAI AL LK
Sbjct: 1 MKKVSIYTDGACSGNPGDGGWGAILIYGNHEKEVSGFEKDTTNNRMELVAAINALKMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS+Y+ GF Q +KW++NGWKTS+K+ VKN++LW + S HK+
Sbjct: 61 PCEVDLYSDSAYLVNGFLQNWVEKWKKNGWKTSNKEEVKNMELWQELDRLSNIHKIRWIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGH+ N+ N + D++A + K
Sbjct: 121 VKGHSDNEYNNRCDKLATDEIKKNSKK 147
>gi|193212241|ref|YP_001998194.1| ribonuclease H [Chlorobaculum parvum NCIB 8327]
gi|238692620|sp|B3QM41|RNH_CHLP8 RecName: Full=Ribonuclease H; Short=RNase H
gi|193085718|gb|ACF10994.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327]
Length = 146
Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats.
Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGACSGNPG GGWG LL Y K ISG + TTNNRME+MAAI+AL ALK P
Sbjct: 3 KTITIYTDGACSGNPGKGGWGALLMYGNTRKEISGYDPATTNNRMEMMAAIRALEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LY+DS+Y+ +Q K+W +NGWKT+ KK V+NIDLW + V+ + H+V + +
Sbjct: 63 CRVELYSDSAYLVNAMNQGWLKRWLKNGWKTASKKPVENIDLWQEIVKLTTLHRVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ NQ N + D +AR A
Sbjct: 123 KGHSDNQYNNRCDELARLAIKE 144
>gi|126463287|ref|YP_001044401.1| ribonuclease H [Rhodobacter sphaeroides ATCC 17029]
gi|187611396|sp|A3PMR3|RNH_RHOS1 RecName: Full=Ribonuclease H; Short=RNase H
gi|126104951|gb|ABN77629.1| ribonuclease H [Rhodobacter sphaeroides ATCC 17029]
Length = 151
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWGVL+ + KE+ + GGE TTNNRMELMAAI AL
Sbjct: 1 MPDLYAYTDGACSGNPGPGGWGVLMLAREGEAVVKERTLQGGEVLTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G + WI W++NGWKT+D+K VKN +LW + A +HKV
Sbjct: 61 EALTRPTEITIVTDSAYVKNGVTTWIHGWKRNGWKTADRKPVKNAELWERLDAAQQRHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WIKGHAG+ ENE+ D +AR FK +
Sbjct: 121 VWRWIKGHAGHAENERADELARAGMAPFKTR 151
>gi|255658870|ref|ZP_05404279.1| ribonuclease HI [Mitsuokella multacida DSM 20544]
gi|260849275|gb|EEX69282.1| ribonuclease HI [Mitsuokella multacida DSM 20544]
Length = 172
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAI 57
+ ++ YTDG+C NP GPGGW ++R + E TNNRMEL AAI
Sbjct: 21 LRPDEAQDFVIYTDGSCLRNPDGPGGWAAVIREVATGVVTELHEGSPSTTNNRMELSAAI 80
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL K+P KV LYTDS Y+ G ++W+ W++ GWK +D + V N DLW + ++
Sbjct: 81 AALGFPKHPAKVALYTDSQYLKNGITKWMSGWKRRGWKKADGQPVLNQDLWQELDALYSR 140
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
H V +W+KGH G + NE+ DR+A++ A+ ++
Sbjct: 141 HDVTFHWVKGHVGVELNERCDRLAKSEAMKYR 172
>gi|84500574|ref|ZP_00998823.1| ribonuclease HI [Oceanicola batsensis HTCC2597]
gi|84391527|gb|EAQ03859.1| ribonuclease HI [Oceanicola batsensis HTCC2597]
Length = 149
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ + AYTDGACSGNPGPGGWGVLL+ K KE+ + GGE TTNNRMEL+AAI AL
Sbjct: 1 MPDYFAYTDGACSGNPGPGGWGVLLQAKDGETVLKERDLKGGEAATTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL + + TDS+YV G + WI W++NGWKT+ KK VKN DLW + EA A+H V
Sbjct: 61 EALGRSTAITIVTDSAYVKNGVTGWIHGWKRNGWKTAAKKPVKNADLWQRLDEAQARHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWQWVKGHAGHPENERADELARAGMAPFK 149
>gi|221640339|ref|YP_002526601.1| ribonuclease H [Rhodobacter sphaeroides KD131]
gi|332559336|ref|ZP_08413658.1| ribonuclease H [Rhodobacter sphaeroides WS8N]
gi|221161120|gb|ACM02100.1| Ribonuclease H [Rhodobacter sphaeroides KD131]
gi|332277048|gb|EGJ22363.1| ribonuclease H [Rhodobacter sphaeroides WS8N]
Length = 151
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWGVL+ + KE+ + GGE TTNNRMELMAAI AL
Sbjct: 1 MPDLYAYTDGACSGNPGPGGWGVLMLAREGEAVVKERTLQGGEVLTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G + WI W++NGWKT+DKK VKN +LW + A +HKV
Sbjct: 61 EALTRPTEITIVTDSAYVKNGVTTWIHGWKRNGWKTADKKPVKNAELWERLDAAQQRHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WIKGHAG+ ENE+ D +AR FK +
Sbjct: 121 VWRWIKGHAGHAENERADELARAGMAPFKTR 151
>gi|78187461|ref|YP_375504.1| ribonuclease H [Chlorobium luteolum DSM 273]
gi|78167363|gb|ABB24461.1| RNase HI [Chlorobium luteolum DSM 273]
Length = 153
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPG GGWG +L Y + +SG TTNNRMEL AAI+AL ALK P
Sbjct: 10 KKITIYTDGACSGNPGKGGWGAMLMYGDAVRELSGYSPATTNNRMELTAAIEALRALKEP 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSYV F + T+ KK V+N DLW + +E +A+H V + +
Sbjct: 70 CSVALYSDSSYVVNAFREGWLDRWTRNNWKTAAKKNVENTDLWKQILELTARHTVTFHKV 129
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A
Sbjct: 130 KGHSDNPYNNRCDELARQAIQK 151
>gi|253577623|ref|ZP_04854933.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
gi|251842993|gb|EES71031.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
Length = 146
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGWG +L + G K +SGGEK TTNNRME+ A I AL+ LK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLMFNGHRKDLSGGEKMTTNNRMEIQAVISALSQLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V +Y+DS+YV F Q + W +NGWK S + V+N DLW + HKV+
Sbjct: 61 PCQVKVYSDSAYVVNCFQQNWIRGWLKNGWKNSKNQPVENRDLWEELWRLMGIHKVEYIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGH+ N+ N D++AR A +
Sbjct: 121 VKGHSDNELNNYCDQLAREAIKRLSS 146
>gi|254463484|ref|ZP_05076900.1| RNase H [Rhodobacterales bacterium HTCC2083]
gi|206680073|gb|EDZ44560.1| RNase H [Rhodobacteraceae bacterium HTCC2083]
Length = 152
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWGVL+R K + +SGG + TTNN+MELMAAI AL
Sbjct: 1 MAKLLAYTDGACSGNPGPGGWGVLMRAMDGDEIVKHRELSGGAELTTNNQMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L+ ++ + TDS+YV G + WI W++NGWKTS KK VKN++LW + A A+H+V
Sbjct: 61 EVLERASELTIITDSTYVKNGVTGWIHGWKKNGWKTSAKKPVKNVELWQRLDAAQARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK
Sbjct: 121 TWEWVKGHAGHPENERADELARAGMAPFKK 150
>gi|220903323|ref|YP_002478635.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|219867622|gb|ACL47957.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 156
Score = 124 bits (310), Expect = 4e-27, Method: Composition-based stats.
Identities = 71/143 (49%), Positives = 90/143 (62%), Gaps = 3/143 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ V +TDG+C GNPGPGGW +LR K SGG TTNNRME++A I+AL L
Sbjct: 1 MQNVTIHTDGSCLGNPGPGGWAAILRLDEGDHRKEFSGGYALTTNNRMEMLAVIEALALL 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K PC V LYTDS YV S+ W + W SDKK V N+DLW + + QHKV+
Sbjct: 61 KSPCTVDLYTDSRYVCDSVSKGWLWGWVKKNWIKSDKKPVLNVDLWQRMLPLLRQHKVNF 120
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
+W+KGHAG+ ENE+ D +AR A
Sbjct: 121 HWLKGHAGHPENERCDVLARAQA 143
>gi|319787628|ref|YP_004147103.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
gi|317466140|gb|ADV27872.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
Length = 148
Score = 124 bits (310), Expect = 4e-27, Method: Composition-based stats.
Identities = 76/135 (56%), Positives = 101/135 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ +TDGACSGNPGPGGWG LLRYKG E+ +SGGE +TTNNRMELMAAI AL AL
Sbjct: 1 MKKIEIHTDGACSGNPGPGGWGALLRYKGHERELSGGEPDTTNNRMELMAAISALEALTE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V+L+TDS YV +G ++W+ W + GWKT+ VKN DLW + A +HK++ W+
Sbjct: 61 ACEVVLFTDSQYVRQGITEWMPGWVRRGWKTAGGDPVKNRDLWERLHAACQRHKIEWRWV 120
Query: 126 KGHAGNQENEKVDRI 140
KGH G+ +NE+VD I
Sbjct: 121 KGHNGDPDNERVDAI 135
>gi|256832142|ref|YP_003160869.1| ribonuclease H [Jonesia denitrificans DSM 20603]
gi|256685673|gb|ACV08566.1| ribonuclease H [Jonesia denitrificans DSM 20603]
Length = 175
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 93/143 (65%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDGAC GNPG GGWGV + K + GGE TTNNRMELMA I+ L ALK PC
Sbjct: 14 TVTMWTDGACKGNPGVGGWGVWMTSGAHTKELFGGENHTTNNRMELMAVIEGLRALKRPC 73
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+ DS+YV KG + WI W++NGW+T+DKK VKN +LW + + +H+V W+KG
Sbjct: 74 DVNLHVDSTYVMKGITSWIHGWKRNGWRTADKKPVKNAELWRELDDQVTRHRVTWTWVKG 133
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H+G+ N+K D +A ++
Sbjct: 134 HSGDVGNDKADELANKGVELVRS 156
>gi|94676945|ref|YP_588912.1| RNase H [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)]
gi|123260529|sp|Q1LT02|RNH_BAUCH RecName: Full=Ribonuclease H; Short=RNase H
gi|94220095|gb|ABF14254.1| RNase H [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 153
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/140 (51%), Positives = 95/140 (67%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG+G +LRYK EK S G TTNNRMELMAAI AL L+ P
Sbjct: 3 KKIEIFTDGSCFGNPGPGGYGAILRYKKYEKEHSAGFLLTTNNRMELMAAIIALEFLRDP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+ ++Y DS YVH+G QWI W+++ WK S KK +KN+DLW + S H + W+K
Sbjct: 63 CEAIVYIDSKYVHQGVIQWIYNWKKHNWKNSAKKIIKNLDLWQRLDVVSNLHVIHWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAV 146
H G+ ENE+ D +AR AA
Sbjct: 123 SHTGHPENERCDELARIAAE 142
>gi|20807809|ref|NP_622980.1| ribonuclease H [Thermoanaerobacter tengcongensis MB4]
gi|22096078|sp|Q8RA67|RNH_THETN RecName: Full=Ribonuclease H; Short=RNase H
gi|20516367|gb|AAM24584.1| Ribonuclease HI [Thermoanaerobacter tengcongensis MB4]
Length = 153
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ V YTDGACSGNPGPGGW +L YKG +K ISG E+ TTNNRMEL AAI+ L A
Sbjct: 2 KNNNEIVEIYTDGACSGNPGPGGWAAVLIYKGIKKEISGFEENTTNNRMELKAAIEGLKA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PCKV LY+DSSY+ F++ WI+KWQ+N W SDK V+N DLW + +E S H+++
Sbjct: 62 LKRPCKVNLYSDSSYLINAFNEGWIEKWQKNNWLKSDKTPVENQDLWKELLEVSKPHQIN 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGH+ N+ N DR+A +
Sbjct: 122 WIKVKGHSDNEYNNLCDRLATEQIKKHIKE 151
>gi|119386325|ref|YP_917380.1| ribonuclease H [Paracoccus denitrificans PD1222]
gi|187611383|sp|A1B840|RNH_PARDP RecName: Full=Ribonuclease H; Short=RNase H
gi|119376920|gb|ABL71684.1| ribonuclease H [Paracoccus denitrificans PD1222]
Length = 155
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ + A+TDGACSGNPGPGGWGVL+R KE+ +SGGE ETTNNRMELMAAI AL
Sbjct: 1 MNALFAWTDGACSGNPGPGGWGVLMRAMDGDRMLKERELSGGEAETTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G +QWI W++NGW+T+D+K VKN DLW + A A+H+V
Sbjct: 61 EALTRPSEITVTTDSAYVKNGVTQWIHGWKKNGWRTADRKPVKNADLWQRLDAAQARHQV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
WIKGHAG+ ENE+ D +AR FK
Sbjct: 121 RWEWIKGHAGHPENERADELARAGMAPFK 149
>gi|58617483|ref|YP_196682.1| ribonuclease H [Ehrlichia ruminantium str. Gardel]
gi|58417095|emb|CAI28208.1| Ribonuclease H [Ehrlichia ruminantium str. Gardel]
Length = 153
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 93/137 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGWG +L + EK I GG TTNNRMEL A ++AL L
Sbjct: 12 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDV 71
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + WIKKW+ NGW+T+DK VKN++LW++ + HK+ YW+
Sbjct: 72 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADKLPVKNLELWLELDKIVKYHKITWYWV 131
Query: 126 KGHAGNQENEKVDRIAR 142
K H+GN NEK D +AR
Sbjct: 132 KAHSGNLYNEKADMLAR 148
>gi|258543045|ref|YP_003188478.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-01]
gi|256634123|dbj|BAI00099.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-01]
gi|256637183|dbj|BAI03152.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-03]
gi|256640235|dbj|BAI06197.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-07]
gi|256643292|dbj|BAI09247.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-22]
gi|256646347|dbj|BAI12295.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-26]
gi|256649400|dbj|BAI15341.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-32]
gi|256652386|dbj|BAI18320.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655444|dbj|BAI21371.1| ribonuclease H [Acetobacter pasteurianus IFO 3283-12]
Length = 164
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 97/144 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDG C NPGPGGWGVLLR KG E+ +SGGE+ETTNNRMEL AA +AL AL PC
Sbjct: 18 VEIWTDGGCRPNPGPGGWGVLLRCKGVERELSGGERETTNNRMELTAAAEALEALTRPCV 77
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L+TDS YV G ++W W + W+ + V N+DLW + ++ + +H+V +W+KGH
Sbjct: 78 VNLHTDSEYVRNGITRWHTGWVRRNWRNASGDPVANMDLWRRLLDVAKRHEVSWHWVKGH 137
Query: 129 AGNQENEKVDRIARNAAVSFKNKI 152
+G ENE+VD++A A + +
Sbjct: 138 SGVPENERVDQLATEAREKIEQSL 161
>gi|116625731|ref|YP_827887.1| RNase HI [Candidatus Solibacter usitatus Ellin6076]
gi|122252091|sp|Q01RW8|RNH_SOLUE RecName: Full=Ribonuclease H; Short=RNase H
gi|116228893|gb|ABJ87602.1| RNase HI [Candidatus Solibacter usitatus Ellin6076]
Length = 146
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 92/145 (63%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V TDGAC GNPGPGGW +LR++ ++K + G EK+TTNNRMEL AAI+ L AL+
Sbjct: 1 MKKVQLITDGACLGNPGPGGWSAILRFEEQKKELWGCEKQTTNNRMELTAAIEGLRALRE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V + TDS YV KG + WI W++ GW T+ KK V N DLW E +H+ W
Sbjct: 61 KCQVEVVTDSEYVLKGITTWIDGWKRKGWMTAAKKPVINQDLWKLLDEQVNRHQATWTWT 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHA + +N + D +A AA
Sbjct: 121 KGHASHADNNRCDELATRAAREQSK 145
>gi|296536605|ref|ZP_06898683.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
gi|296263064|gb|EFH09611.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
Length = 167
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 93/143 (65%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
D R V +TDG C NPGPGGW +LRY EK +SG + TTNNRMEL AAI AL
Sbjct: 8 DGAAPRLVEIWTDGGCKPNPGPGGWAAILRYGEAEKELSGYDPATTNNRMELTAAIMALE 67
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+LK PC V+L+TDS YV G S+W+ W +N W+ + K V N +LW + + A+ HKV+
Sbjct: 68 SLKRPCTVVLHTDSEYVRNGISRWVHGWVRNNWRNAAKDPVANYELWQRLLAAAKPHKVE 127
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
W++GHAG+ NE+ D++A A
Sbjct: 128 WLWVRGHAGDPMNERADQLATAA 150
>gi|269215599|ref|ZP_06159453.1| ribonuclease HI [Slackia exigua ATCC 700122]
gi|269131086|gb|EEZ62161.1| ribonuclease HI [Slackia exigua ATCC 700122]
Length = 158
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 95/145 (65%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V Y+DG+ GNPGPGG+G +LR+ +K +SGG + TTNNRMEL+ I AL A
Sbjct: 2 HVDIYSDGSSRGNPGPGGYGAILRFVDPSGGVHQKELSGGFERTTNNRMELLGVIVALEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC+V +YTDS YV K F+ W++ GWK + K+ VKN DLWM+ + A H+V
Sbjct: 62 LKAPCEVAVYTDSQYVVKAFTDRWVDGWKRRGWKNAKKEPVKNQDLWMRLIAALEGHRVS 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG+ ENE+ D +A AA
Sbjct: 122 FHWVKGHAGHPENERCDELATTAAD 146
>gi|288940137|ref|YP_003442377.1| ribonuclease H [Allochromatium vinosum DSM 180]
gi|288895509|gb|ADC61345.1| ribonuclease H [Allochromatium vinosum DSM 180]
Length = 147
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 77/136 (56%), Positives = 99/136 (72%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V A+TDGAC GNPGPGGWGVLLR+ EK + GGE+ETTNNRMELMA I AL ALK P
Sbjct: 5 VEAFTDGACKGNPGPGGWGVLLRWGEVEKELHGGERETTNNRMELMAVIMALEALKRPTP 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS YV +G +W+ +W++NGW+T+D++ VKN DLW + A QH+V W+KGH
Sbjct: 65 IRITTDSQYVKRGVGEWMPRWKRNGWRTADRQPVKNRDLWERLDRALGQHEVSWRWVKGH 124
Query: 129 AGNQENEKVDRIARNA 144
AG+ ENE+ D +A
Sbjct: 125 AGHAENERADWLANLG 140
>gi|269468812|gb|EEZ80416.1| Ribonuclease HI [uncultured SUP05 cluster bacterium]
Length = 145
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-ALK 64
+ ++ YTDG C GNPG GGWGV LRY +K + G EK TTNN+MELMAAIKAL
Sbjct: 1 MDKIIIYTDGGCRGNPGIGGWGVWLRYGDHDKKLKGVEKGTTNNQMELMAAIKALEAIKS 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ L+TDS YV G + WI W+ WKT+++K VKN+ LW + + QH VD +W
Sbjct: 61 STISIDLFTDSKYVMHGINDWIVGWKAKDWKTANRKPVKNVALWKRLDALNEQHNVDWHW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGH+GN+ N+ D +A A
Sbjct: 121 VKGHSGNEGNDIADELANQAMDEM 144
>gi|78778219|ref|YP_394534.1| ribonuclease H [Sulfurimonas denitrificans DSM 1251]
gi|78498759|gb|ABB45299.1| RNase HI [Sulfurimonas denitrificans DSM 1251]
Length = 143
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 98/145 (67%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+ GNPGPGG+GV+LR+ KE+ ISG E+ TTNNRMEL+ I+ L AL+
Sbjct: 1 MKKITLFSDGSALGNPGPGGYGVILRFGDKEREISGAEEHTTNNRMELLGVIEGLRALRE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V + +DSSYV KG ++W+ W D K +KN DLW +++ S HK++ W+
Sbjct: 61 PCAVDIVSDSSYVVKGINEWLGSWI-----KKDFKNIKNPDLWREYIAVSKGHKINAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
+GH G+ ENE+ D +A+N A+ K
Sbjct: 116 RGHDGHVENERCDILAKNEALKIKE 140
>gi|84684023|ref|ZP_01011925.1| ribonuclease HI [Maritimibacter alkaliphilus HTCC2654]
gi|84667776|gb|EAQ14244.1| ribonuclease HI [Rhodobacterales bacterium HTCC2654]
Length = 149
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 108/149 (72%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ A+TDGACSGNPGPGGWGVL++ K KE+ +SGGE TTNNRMELMAAI AL
Sbjct: 1 MVDLIAHTDGACSGNPGPGGWGVLMQAKDGGTVVKERTLSGGEPATTNNRMELMAAIMAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L+ K+ + TDS+YV G + WI W++NGW+T++KK VKN++LW + EA+ +H V
Sbjct: 61 ETLERASKITIVTDSAYVKNGVTGWIHGWKRNGWRTANKKPVKNVELWQRLDEAAKRHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ WIKGHAG++ENE+ D +AR FK
Sbjct: 121 EWRWIKGHAGHEENERADELAREGMAPFK 149
>gi|225631252|ref|ZP_03787938.1| ribonuclease H [Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225591053|gb|EEH12249.1| ribonuclease H [Wolbachia endosymbiont of Muscidifurax uniraptor]
Length = 145
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 70/139 (50%), Positives = 97/139 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV YTDGACSGNPG GGW ++ ++ K I G E+ TTNN+MEL A I L LK+
Sbjct: 4 KEVTIYTDGACSGNPGAGGWAAIILFQDYRKDIYGREENTTNNKMELTAVINGLKVLKFS 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY DS YV G ++WI KW+ NGWKTS+KK+VKN++LW + ++QH++D W+K
Sbjct: 64 CNINLYMDSLYVKHGITEWINKWKMNGWKTSNKKSVKNMELWKELDSVASQHEIDWKWVK 123
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G++ NE+ D +AR A
Sbjct: 124 AHSGDKYNEEADSLARKAI 142
>gi|119356417|ref|YP_911061.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266]
gi|187611359|sp|A1BE10|RNH_CHLPD RecName: Full=Ribonuclease H; Short=RNase H
gi|119353766|gb|ABL64637.1| RNase HI [Chlorobium phaeobacteroides DSM 266]
Length = 146
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPG GGWG LL Y + ISG TTNNRMEL AAI+AL LK P
Sbjct: 3 KKIIVYTDGACSGNPGKGGWGALLMYGASTREISGYSPATTNNRMELSAAIEALETLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQ-NGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSY+ ++ K N WKT+ KK+V+NIDLW K + H V + +
Sbjct: 63 CIVHLYSDSSYLVNAINEGWLKRWTANNWKTAAKKSVENIDLWQKILTLIKLHDVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+ N N + D +AR A + +
Sbjct: 123 KGHSDNPYNNRCDELARQAIKNNR 146
>gi|237640632|pdb|3H08|A Chain A, Crystal Structure Of The Ribonuclease H1 From Chlorobium
Tepidum
gi|237640633|pdb|3H08|B Chain B, Crystal Structure Of The Ribonuclease H1 From Chlorobium
Tepidum
Length = 146
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/142 (50%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDGA SGNPG GGWG LL Y K ISG + TTNNRMELMAAIK L ALK P
Sbjct: 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V LY+DS+Y+ ++ K+W +NGWKT+ KK V+NIDLW + ++ + H+V + +
Sbjct: 63 ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A
Sbjct: 123 KGHSDNPYNSRADELARLAIKE 144
>gi|310640259|ref|YP_003945017.1| ribonuclease hi [Paenibacillus polymyxa SC2]
gi|309245209|gb|ADO54776.1| Ribonuclease HI [Paenibacillus polymyxa SC2]
Length = 145
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGWG++L Y K +SG EK TTNNRME+ + I+AL LK
Sbjct: 1 MKEVMVYTDGACSGNPGPGGWGIVLLYGEHRKELSGAEKMTTNNRMEIKSVIEALKLLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V +++DS+YV F Q WIK W +NGW+ S + V+N +LW + E H+V+
Sbjct: 61 PCRVKVHSDSAYVVNCFKQGWIKNWLRNGWRNSKNQPVENKELWEELWELMGNHEVEYVK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGH+ N+ N + D +A +A + +
Sbjct: 121 VKGHSDNELNNRCDFLATSAVKNLR 145
>gi|42520189|ref|NP_966104.1| ribonuclease H [Wolbachia endosymbiont of Drosophila melanogaster]
gi|99034319|ref|ZP_01314357.1| hypothetical protein Wendoof_01000844 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|59798567|sp|Q73I74|RNH_WOLPM RecName: Full=Ribonuclease H; Short=RNase H
gi|42409927|gb|AAS14038.1| ribonuclease H [Wolbachia endosymbiont of Drosophila melanogaster]
Length = 145
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 98/139 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV YTDGACSGNPG GGW ++ ++ K I G E+ TTNN+MEL A I L LK+
Sbjct: 4 KEVIIYTDGACSGNPGAGGWAAIILFQDYRKDIYGREENTTNNKMELTAVINGLKVLKFS 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS YV G ++WI KW+ NGWKTS+KK+VKN++LW + ++QH++D W+K
Sbjct: 64 CNINLYTDSLYVKHGITEWINKWKMNGWKTSNKKSVKNMELWKELDNVASQHEIDWKWVK 123
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G++ NE+ D +AR A
Sbjct: 124 AHSGDKYNEEADSLARKAI 142
>gi|91205181|ref|YP_537536.1| ribonuclease H [Rickettsia bellii RML369-C]
gi|123388136|sp|Q1RJL7|RNH_RICBR RecName: Full=Ribonuclease H; Short=RNase H
gi|91068725|gb|ABE04447.1| Ribonuclease H [Rickettsia bellii RML369-C]
Length = 155
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 69/137 (50%), Positives = 88/137 (64%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGACSGNPGPGGWG LL++ K I G E ETTNNRME+ AA++AL LK PC
Sbjct: 7 KVVIYTDGACSGNPGPGGWGALLQFNEVNKEIFGHELETTNNRMEITAALEALKILKKPC 66
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +YTDS Y+ +G + WI W +N W S+ + VKN DLW E ++H + W+KG
Sbjct: 67 HVEIYTDSKYLQQGITVWIHNWIKNNWCKSNNEPVKNADLWQNLYEELSKHTIIWKWVKG 126
Query: 128 HAGNQENEKVDRIARNA 144
HA N N D++A
Sbjct: 127 HASNSGNIAADKLAVQG 143
>gi|226310660|ref|YP_002770554.1| ribonuclease H [Brevibacillus brevis NBRC 100599]
gi|226093608|dbj|BAH42050.1| ribonuclease H [Brevibacillus brevis NBRC 100599]
Length = 146
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+REV YTDGACSGNPGPGGWG +L Y K +SG E TTNNRMELMAAIKAL+ LK
Sbjct: 2 TMREVEIYTDGACSGNPGPGGWGAVLMYGQHIKEMSGAEPHTTNNRMELMAAIKALSTLK 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
PCKV L +DS+Y+ F Q K W +NGWK S + V+N DLW + ++ HKV+
Sbjct: 62 EPCKVTLSSDSAYLVNCFKQGWYKGWLKNGWKNSKGQQVENQDLWKELLQLMDTHKVEYV 121
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+KGHA N+ N + D +A A
Sbjct: 122 KVKGHADNKWNNRCDELATGAIKQL 146
>gi|297544633|ref|YP_003676935.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296842408|gb|ADH60924.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 152
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACSGNPGPGGW +L YK K ISG E+ TTNNRMEL A I+AL ALK PCK
Sbjct: 8 VEIYTDGACSGNPGPGGWAAVLLYKEARKEISGFEENTTNNRMELKAVIEALKALKRPCK 67
Query: 69 VLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LY+DSSYV F + +KWQ+N W SDK V+N +LW + +E S +H+++ +KG
Sbjct: 68 VNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELLEVSKRHQINWIKVKG 127
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HA ++ N DR+A K+
Sbjct: 128 HADDEFNNLCDRLATEQIKRNTKKL 152
>gi|15645285|ref|NP_207455.1| ribonuclease H [Helicobacter pylori 26695]
gi|2500559|sp|P56120|RNH_HELPY RecName: Full=Ribonuclease HI; Short=RNase HI
gi|2313784|gb|AAD07724.1| ribonuclease H (rnhA) [Helicobacter pylori 26695]
Length = 143
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK ISGGE+ TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLEVSKGHSIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|217033709|ref|ZP_03439136.1| hypothetical protein HP9810_5g51 [Helicobacter pylori 98-10]
gi|216943898|gb|EEC23335.1| hypothetical protein HP9810_5g51 [Helicobacter pylori 98-10]
Length = 154
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMTVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|73667375|ref|YP_303391.1| RNase H [Ehrlichia canis str. Jake]
gi|123759436|sp|Q3YR62|RNH_EHRCJ RecName: Full=Ribonuclease H; Short=RNase H
gi|72394516|gb|AAZ68793.1| RNase H [Ehrlichia canis str. Jake]
Length = 146
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 94/142 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGWG +L + E+ I G +TTNNRMEL A I+AL LK
Sbjct: 5 LNKVVIYTDGACSGNPGPGGWGAILLFDKNERTICGNNPDTTNNRMELTAVIEALKFLKV 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LYTDS YV G + WI+KW+ NGW+T+ K VKN++LW++ ++ H V YW+
Sbjct: 65 AYNVDLYTDSIYVKDGITLWIEKWKINGWRTASKLPVKNLELWLELDSLASFHNVTWYWV 124
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
K HAGN N+K D +AR+
Sbjct: 125 KAHAGNLYNQKADILARSQISK 146
>gi|239623764|ref|ZP_04666795.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521795|gb|EEQ61661.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 160
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ +V YTDG+ GNP GPGG+GV+L + EK +SGG TTNNRMELMAAI
Sbjct: 1 MSKVQIYTDGSARGNPDGPGGYGVVLHFTDNKGQLHEKTLSGGYVRTTNNRMELMAAIMG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L L PC+V LY+DS Y+ F+Q VKNIDLW + ++A H
Sbjct: 61 LETLNRPCQVELYSDSKYLTDAFNQRWIDSWIAKGWNRGKSGPVKNIDLWKRLLKAKEPH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGHAG+ +NE+ D++A +AA
Sbjct: 121 QVTFIWVKGHAGHPQNERCDQLATSAAD 148
>gi|189499570|ref|YP_001959040.1| ribonuclease H [Chlorobium phaeobacteroides BS1]
gi|238692269|sp|B3EMT1|RNH_CHLPB RecName: Full=Ribonuclease H; Short=RNase H
gi|189495011|gb|ACE03559.1| Ribonuclease H [Chlorobium phaeobacteroides BS1]
Length = 146
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++V YTDGACSGNPG GGWG LL + ++ +SG TTNNRMELMAAI+AL ALK P
Sbjct: 3 KKVTIYTDGACSGNPGKGGWGALLMFGSVKRELSGYSPATTNNRMELMAAIQALEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V LY+DSSY+ ++ K + T+ KK V+NIDLW +E H V + +
Sbjct: 63 CEVALYSDSSYLVNAINKGWLKRWTSNNWKTAAKKPVENIDLWKMILELIRLHSVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+ N+ N + D +A A + +
Sbjct: 123 KGHSDNEFNNRCDYLATQAIKNNR 146
>gi|188527490|ref|YP_001910177.1| ribonuclease H [Helicobacter pylori Shi470]
gi|188143730|gb|ACD48147.1| ribonuclease H [Helicobacter pylori Shi470]
gi|308063546|gb|ADO05433.1| ribonuclease H [Helicobacter pylori Sat464]
Length = 154
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|188585798|ref|YP_001917343.1| RNase HI [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350485|gb|ACB84755.1| RNase HI [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 152
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPGPGGWG +L + +K +SG + TTN RMEL AA++AL ALKYP
Sbjct: 9 KRVTIYTDGACSGNPGPGGWGAILLFNEHKKELSGSAENTTNQRMELYAAVQALKALKYP 68
Query: 67 CKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L +DS+Y+ F Q W KKWQ+N W T KK V N DLW + +E + H + +
Sbjct: 69 CNVELCSDSAYLVNCFQQGWWKKWQRNNWLTKSKKKVDNQDLWRELIELNDYHSIQWIKV 128
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+ ++ N + D++A A
Sbjct: 129 KGHSDDELNNRADQLATEAI 148
>gi|307267402|ref|ZP_07548894.1| ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
gi|306917587|gb|EFN47869.1| ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
Length = 152
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 77/151 (50%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S ++ V YTDGACSGNPGPGGW +L YKG +K ISG E+ TTNNRMEL A I+AL A
Sbjct: 2 SNNIDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEALKA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PCKV LY+DSSYV F + +KWQ+N W SDK V+N +LW + +E S +H+++
Sbjct: 62 LKRPCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELLEVSKRHQIN 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+KGHA ++ N DR+A K+
Sbjct: 122 WIKVKGHADSEYNNLCDRLATEQIKRNTKKL 152
>gi|148284855|ref|YP_001248945.1| ribonuclease H [Orientia tsutsugamushi str. Boryong]
gi|187611382|sp|A5CEP5|RNH_ORITB RecName: Full=Ribonuclease H; Short=RNase H
gi|146740294|emb|CAM80675.1| ribonuclease H [Orientia tsutsugamushi str. Boryong]
Length = 168
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGACS NPGPGGWGV L YK EK + G TTNNRMEL A I+AL LK+ K
Sbjct: 14 VKIYTDGACSHNPGPGGWGVYLSYKNHEKKVYGSNINTTNNRMELTATIEALRLLKHSYK 73
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V LYTDS YV G ++WIKKW +N W+TS+K+ V N+DLW +H+V +W++GH
Sbjct: 74 VELYTDSQYVQMGITKWIKKWIKNNWETSNKQLVCNVDLWQLLYTLIQKHQVSWHWVRGH 133
Query: 129 AGNQENEKVDRIAR----NAAVSFKN 150
+GN NE D++A A KN
Sbjct: 134 SGNIGNEIADKLATNGKIEAMKIAKN 159
>gi|254488892|ref|ZP_05102097.1| ribonuclease HI [Roseobacter sp. GAI101]
gi|214045761|gb|EEB86399.1| ribonuclease HI [Roseobacter sp. GAI101]
Length = 151
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ AYTDGACSGNPGPGGWG L+R KE+ + GGE TTNNRMELMAAI AL
Sbjct: 1 MAKLIAYTDGACSGNPGPGGWGALMRAMEDGKIVKERELKGGEAATTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P ++ + TDS+YV G + WI W++NGWK + KK VKN +LW + A+A+H V
Sbjct: 61 EALARPTEITIVTDSNYVKNGITNWIHGWKKNGWKNAAKKPVKNAELWQRLDAANARHSV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGHAG+ ENE+ D +AR FK K
Sbjct: 121 TWKWVKGHAGHPENERADELARAGMAPFKGK 151
>gi|187611435|sp|Q3B2H0|RNH_PELLD RecName: Full=Ribonuclease H; Short=RNase H
Length = 146
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPG GGWG +L Y + +SG TTNNRMEL AAI+AL ALK P
Sbjct: 3 KKITIYTDGACSGNPGKGGWGAMLMYGDAVRELSGYSPATTNNRMELTAAIEALRALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSYV F + T+ KK V+N DLW + +E +A+H V + +
Sbjct: 63 CSVALYSDSSYVVNAFREGWLDRWTRNNWKTAAKKNVENTDLWKQILELTARHTVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A
Sbjct: 123 KGHSDNPYNNRCDELARQAIQK 144
>gi|167037591|ref|YP_001665169.1| ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167040253|ref|YP_001663238.1| ribonuclease H [Thermoanaerobacter sp. X514]
gi|300914337|ref|ZP_07131653.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307724427|ref|YP_003904178.1| Ribonuclease H [Thermoanaerobacter sp. X513]
gi|320116006|ref|YP_004186165.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|238687624|sp|B0K1A7|RNH_THEPX RecName: Full=Ribonuclease H; Short=RNase H
gi|238687710|sp|B0K9M0|RNH_THEP3 RecName: Full=Ribonuclease H; Short=RNase H
gi|166854493|gb|ABY92902.1| Ribonuclease H [Thermoanaerobacter sp. X514]
gi|166856425|gb|ABY94833.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300889272|gb|EFK84418.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307581488|gb|ADN54887.1| Ribonuclease H [Thermoanaerobacter sp. X513]
gi|319929097|gb|ADV79782.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 155
Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S ++ V YTDGACSGNPGPGGW +L YKG +K ISG E+ TTNNRMEL A I+ L A
Sbjct: 2 SNNIDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEGLKA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PCKV LY+DSSYV F + +KWQ+N W SDK V+N DLW + +E S H+V+
Sbjct: 62 LKRPCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQDLWKELLEISKNHQVN 121
Query: 122 LYWIKGHAGNQENEKVDRIARN 143
+KGHA N+ N DR+A
Sbjct: 122 WIKVKGHADNEYNNLCDRLATE 143
>gi|213019774|ref|ZP_03335577.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212994604|gb|EEB55249.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 185
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 105/153 (68%), Gaps = 7/153 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAA 56
MD ++V YTDGACSGNPGPGGW ++ Y+ K +K ISGGE+ TTNN+MEL A
Sbjct: 9 MDK---KKVIIYTDGACSGNPGPGGWAAVVMYENKSVFIKKRISGGEENTTNNKMELKAV 65
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
I L LK CKV+++TDS Y+ +G ++WI KW+ NGWKT+DKK VKN +LW + E +
Sbjct: 66 INGLKMLKISCKVIVHTDSQYIKQGITEWINKWKTNGWKTADKKPVKNRELWQELDEVAL 125
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
QH ++ W++ H GN NE+ DR+AR + + K
Sbjct: 126 QHDINWKWVRAHNGNMYNEEADRLARKESKNLK 158
>gi|258404617|ref|YP_003197359.1| ribonuclease H [Desulfohalobium retbaense DSM 5692]
gi|257796844|gb|ACV67781.1| ribonuclease H [Desulfohalobium retbaense DSM 5692]
Length = 157
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 103/141 (73%), Gaps = 2/141 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V YTDGAC GNPGPGGW +L Y G+ K +SGG +TTNNRME++A I+ L LK PC
Sbjct: 7 VRLYTDGACLGNPGPGGWAAVLLYGGEARKELSGGYAKTTNNRMEMLALIEGLKVLKRPC 66
Query: 68 KVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V ++TDS Y+H G ++ +KWQ+NGWKT+ KK VKN DLW + +++H+++L+W++
Sbjct: 67 RVKVWTDSRYLHDGLTKGWLQKWQKNGWKTAAKKPVKNKDLWQELAALTSRHQLELHWVR 126
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE+ D +A+ AA
Sbjct: 127 GHSGDPENERCDVLAKAAANQ 147
>gi|295107482|emb|CBL05025.1| Ribonuclease HI [Gordonibacter pamelaeae 7-10-1-b]
Length = 158
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V +TDG+ GNPGPGG+G ++R+ K EK +S G + TTNNRMELMA I L A
Sbjct: 2 QVDIFTDGSARGNPGPGGYGAVMRFVDGAGKVHEKELSQGYEHTTNNRMELMAVIAGLEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKVD 121
LK PC V LY+DS YV F+Q + +K VKN DLW + + A H+V+
Sbjct: 62 LKRPCDVTLYSDSQYVVNAFNQHWVDGWLKRGWKNSQKQPVKNDDLWKRLLAAKKPHRVE 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG+ ENE+ D +A AA
Sbjct: 122 FVWVKGHAGHPENERCDELATAAAD 146
>gi|111223248|ref|YP_714042.1| ribonuclease H [Frankia alni ACN14a]
gi|123044338|sp|Q0RJ31|RNH_FRAAA RecName: Full=Ribonuclease H; Short=RNase H
gi|111150780|emb|CAJ62483.1| Ribonuclease H [Frankia alni ACN14a]
Length = 157
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYPC 67
V +TDGACSGNPGPGGWG +LRY E+ + GGE TTNNRMEL AAI AL AL P
Sbjct: 10 VDIHTDGACSGNPGPGGWGAVLRYGEHERELHGGEPARTTNNRMELTAAIMALEALTRPS 69
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+Y+ G + WI W++NGW T D+ V+N DLW + A A+H+V+ W++G
Sbjct: 70 VVRLHTDSTYLRSGITTWIAGWRRNGWLTKDRTPVRNADLWQRLEAAVARHEVEWLWVRG 129
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
HAG+ NE+ D +A +
Sbjct: 130 HAGDPGNERADALAARGLQEAR 151
>gi|220925641|ref|YP_002500943.1| ribonuclease H [Methylobacterium nodulans ORS 2060]
gi|219950248|gb|ACL60640.1| ribonuclease H [Methylobacterium nodulans ORS 2060]
Length = 223
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGWGV++ +SGG+ +TNNRMEL AAI+AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWGVVILAPEGPIELSGGDPRSTNNRMELTAAIRALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T VKN DL + +A+ V W+
Sbjct: 60 GAAIEMRCDSQYVVKSVTEWMRGWKAKGWRT-TTGEVKNRDLMERLDALAARRDVRWVWV 118
Query: 126 KGHAGNQENEKVDRIA---RNAAVSF 148
+GHAG + NE+ DR+A R AA+
Sbjct: 119 RGHAGEEGNERADRLAAEGRRAALGL 144
>gi|134102632|ref|YP_001108293.1| ribonuclease HI [Saccharopolyspora erythraea NRRL 2338]
gi|291004684|ref|ZP_06562657.1| ribonuclease HI [Saccharopolyspora erythraea NRRL 2338]
gi|187611404|sp|A4FMU3|RNH_SACEN RecName: Full=Ribonuclease H; Short=RNase H
gi|133915255|emb|CAM05368.1| ribonuclease HI [Saccharopolyspora erythraea NRRL 2338]
Length = 155
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGACSGNPGPGGWGV+LRY E+ + GGE TTNN+MEL A I+ L AL P
Sbjct: 9 NAVDLYTDGACSGNPGPGGWGVVLRYGHHEREMYGGETATTNNKMELTAVIEGLAALTRP 68
Query: 67 CK-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYW 124
V ++TDS+YV KG ++W++ W++NGW TS K+ VKN DLW + + +H ++ W
Sbjct: 69 VPLVRIHTDSTYVLKGITEWMRGWKRNGWLTSAKQPVKNADLWRRLDQECGRHGEITWEW 128
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGHAG+ ENE+ D++A K
Sbjct: 129 VKGHAGHPENERADKLACKGRDEAKK 154
>gi|67458572|ref|YP_246196.1| ribonuclease H [Rickettsia felis URRWXCal2]
gi|75536962|sp|Q4UN27|RNH_RICFE RecName: Full=Ribonuclease H; Short=RNase H
gi|67004105|gb|AAY61031.1| Ribonuclease H [Rickettsia felis URRWXCal2]
Length = 152
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K I G E +TTNNRME+ AA++AL
Sbjct: 1 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEIFGYELDTTNNRMEITAALEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 57 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 IWKWVKGHANNSGNIAADKLAVQG 140
>gi|33519690|ref|NP_878522.1| ribonuclease H [Candidatus Blochmannia floridanus]
gi|81836088|sp|Q7VQB6|RNH_BLOFL RecName: Full=Ribonuclease H; Short=RNase H
gi|33517353|emb|CAD83738.1| ribonuclease H [Candidatus Blochmannia floridanus]
Length = 167
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG +LRY+ +K S G TTNNRMELMAAI AL +LK
Sbjct: 3 KQIEIFTDGSCLGNPGPGGCAGILRYRQYKKEFSAGYHITTNNRMELMAAIIALESLKNS 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV-DLYWI 125
C+++LY+DS Y+ G +QWI+ W+++ WKT+D K VKNIDLW + A H + D W+
Sbjct: 63 CQIILYSDSQYLLTGITQWIQIWKKHHWKTADSKLVKNIDLWRRLDIAIQPHNIKDWRWL 122
Query: 126 KGHAGNQENEKVDRIARNAAV 146
K H G+ +NE+ D++AR AA
Sbjct: 123 KSHTGHPDNERCDQLARKAAK 143
>gi|308061991|gb|ADO03879.1| ribonuclease H [Helicobacter pylori Cuz20]
Length = 154
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHIKLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|261839512|gb|ACX99277.1| ribonuclease H [Helicobacter pylori 52]
Length = 154
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLVNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKIEAQK 137
>gi|114770094|ref|ZP_01447632.1| ribonuclease HI [alpha proteobacterium HTCC2255]
gi|114548931|gb|EAU51814.1| ribonuclease HI [alpha proteobacterium HTCC2255]
Length = 150
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 85/150 (56%), Positives = 104/150 (69%), Gaps = 5/150 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-----SGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWGVL+ K KII SGG ETTNN+MEL AAI AL
Sbjct: 1 MPDLYAYTDGACSGNPGPGGWGVLMIAKEGSKIIKTKNLSGGTAETTNNQMELTAAIMAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P K+ L TDSSYV G ++WI W++NGWKT+ KK VKN +LW + A+ H V
Sbjct: 61 EALAKPSKITLITDSSYVKDGITKWIFGWKKNGWKTAAKKPVKNEELWKRLELATELHDV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
WIKGHAG+ ENE+ D +ARN FK+
Sbjct: 121 SWEWIKGHAGHFENEQADELARNGMEPFKS 150
>gi|58698653|ref|ZP_00373546.1| RNase H [Wolbachia endosymbiont of Drosophila ananassae]
gi|225630264|ref|YP_002727055.1| ribonuclease H [Wolbachia sp. wRi]
gi|254808031|sp|C0R2X2|RNH_WOLWR RecName: Full=Ribonuclease H; Short=RNase H
gi|58534831|gb|EAL58937.1| RNase H [Wolbachia endosymbiont of Drosophila ananassae]
gi|225592245|gb|ACN95264.1| ribonuclease H [Wolbachia sp. wRi]
Length = 145
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 98/139 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV YTDGACSGNPG GGW ++ ++ K I G E+ TTNN+MEL A I L LK+
Sbjct: 4 KEVAIYTDGACSGNPGAGGWAAIILFQDYRKDIYGREENTTNNKMELTAVINGLKVLKFS 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS YV G ++WI KW+ NGWKTS+KK+VKN++LW + ++QH++D W+K
Sbjct: 64 CNINLYTDSLYVKHGITEWINKWKMNGWKTSNKKSVKNMELWKELDNVASQHEIDWKWVK 123
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G++ NE+ D +AR A
Sbjct: 124 AHSGDKYNEEADSLARKAI 142
>gi|317486320|ref|ZP_07945151.1| RNase H [Bilophila wadsworthia 3_1_6]
gi|316922431|gb|EFV43686.1| RNase H [Bilophila wadsworthia 3_1_6]
Length = 155
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 72/138 (52%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R V +TDG+C GNPG GGWG +LR +G EK +SGG TTNNRME+MAAI L LK
Sbjct: 1 MRNVTIFTDGSCLGNPGRGGWGCILRCEGHEKELSGGYAHTTNNRMEIMAAIAGLEELKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LYTDS Y+ + W++NGWKT+ KK VKN DLW + +H V L W
Sbjct: 61 PCAVTLYTDSQYLRHAVEKKWLAGWRKNGWKTAAKKPVKNRDLWERLQVQLDRHSVTLEW 120
Query: 125 IKGHAGNQENEKVDRIAR 142
++GH G+ ENE+ D +AR
Sbjct: 121 VRGHNGHAENERCDELAR 138
>gi|261838099|gb|ACX97865.1| ribonuclease H [Helicobacter pylori 51]
Length = 154
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 93/142 (65%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLINWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A+
Sbjct: 116 KGHNGHAENERCDSLAKIEALK 137
>gi|308067490|ref|YP_003869095.1| ribonuclease H [Paenibacillus polymyxa E681]
gi|305856769|gb|ADM68557.1| Ribonuclease H (RNase H) [Paenibacillus polymyxa E681]
Length = 146
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGWG++L Y K +SG EK TTNNRME+ + I+AL LK
Sbjct: 2 MKEVMVYTDGACSGNPGPGGWGIVLLYGEHRKELSGAEKMTTNNRMEIKSVIEALKLLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V +++DS+YV F Q WIK W +NGW+ S + V+N +LW + E +H+V+
Sbjct: 62 PCHVKVHSDSAYVVNCFKQGWIKNWLRNGWRNSKNQPVENKELWEELWELMGKHEVEYVK 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGH+ N+ N + D +A +A + +
Sbjct: 122 VKGHSDNELNNRCDFLATSAVKNLR 146
>gi|332673508|gb|AEE70325.1| ribonuclease HI [Helicobacter pylori 83]
Length = 154
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|328955871|ref|YP_004373204.1| Ribonuclease H [Coriobacterium glomerans PW2]
gi|328456195|gb|AEB07389.1| Ribonuclease H [Coriobacterium glomerans PW2]
Length = 162
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/150 (47%), Positives = 99/150 (66%), Gaps = 7/150 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLL-----RYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++ V YTDG+ GNPGPGG+G +L R + + +SGG + TTNNRMELMAAI AL
Sbjct: 1 MK-VTIYTDGSSRGNPGPGGYGAVLTCVGPRGERFRREMSGGFRRTTNNRMELMAAIVAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
AL P +V L++DS Y+ F++ W + GWKT+ KK VKN+DLW + +EA + H+
Sbjct: 60 EALTRPSEVELHSDSRYLVNAFNERWIDGWLRRGWKTAAKKPVKNVDLWKRLLEAKSDHR 119
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V W++GHAG++ NE+ D +A AA S K
Sbjct: 120 VAFVWVRGHAGSKLNERCDELATEAADSAK 149
>gi|67989579|gb|AAY84710.1| ribonuclease HI [uncultured proteobacterium]
Length = 148
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 101/147 (68%), Gaps = 5/147 (3%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTALK 64
AYTDGACSGNPGPGGWG L+R KE+ + GGE TTN+RMELMAAI AL AL
Sbjct: 2 IAYTDGACSGNPGPGGWGALMRAMDGDKIDKERELKGGEPATTNDRMELMAAISALEALA 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P ++ + TDS+YV G + WI W++NGWK + KK VKN +LW + A+A+H+V W
Sbjct: 62 RPTEITIVTDSNYVKNGITGWIYGWKKNGWKNAAKKPVKNAELWQRLDAANARHQVTWEW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHAG+ ENE+ D +AR FKN+
Sbjct: 122 VKGHAGHPENERADELARAGMAPFKNQ 148
>gi|317181974|dbj|BAJ59758.1| ribonuclease H [Helicobacter pylori F57]
Length = 154
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQKRIK 140
>gi|21362887|sp|Q92GL5|RNH_RICCN RecName: Full=Ribonuclease HI; Short=RNase HI
Length = 152
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 1 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C + +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 57 RILKKSCNIEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 IWKWVKGHANNSGNIAADKLAVQG 140
>gi|326389406|ref|ZP_08210973.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
gi|325994411|gb|EGD52836.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
Length = 152
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 76/151 (50%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S ++ V YTDGACSGNPGPGGW +L YKG +K ISG E+ TTNNRMEL A I+AL A
Sbjct: 2 SNNIDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEALKA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PCKV LY+DSSYV F + +KWQ+N W SDK V+N +LW + ++ S +H+++
Sbjct: 62 LKRPCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELLKVSKRHQIN 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+KGHA ++ N DR+A K+
Sbjct: 122 WIKVKGHADSEYNNLCDRLATEQIKRNTKKL 152
>gi|317014082|gb|ADU81518.1| ribonuclease H [Helicobacter pylori Gambia94/24]
Length = 143
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK ISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKVLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHSIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|317178976|dbj|BAJ56764.1| ribonuclease H [Helicobacter pylori F30]
Length = 154
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHVENERCDSLAKIEAQK 137
>gi|315586659|gb|ADU41040.1| ribonuclease H [Helicobacter pylori 35A]
Length = 154
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKIEAQK 137
>gi|317180454|dbj|BAJ58240.1| ribonuclease H [Helicobacter pylori F32]
Length = 154
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNMDLWKEFLEVSKGHLIMAIWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ ENE+ D +A+ A I
Sbjct: 116 KGHNGHAENERCDSLAKLEAQKRVKTI 142
>gi|303256782|ref|ZP_07342796.1| ribonuclease HI [Burkholderiales bacterium 1_1_47]
gi|302860273|gb|EFL83350.1| ribonuclease HI [Burkholderiales bacterium 1_1_47]
Length = 156
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 93/147 (63%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M ++EV +TDGA GNPGPGGWG ++YKG + GG TTNN+MEL A +AL
Sbjct: 1 MIRLEMKEVEIWTDGASKGNPGPGGWGAWMKYKGHVLELCGGALSTTNNQMELTAPTEAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PCKV+L+TDS YV +G + WI W + GWKT+D VKN +LW K EAS HK+
Sbjct: 61 CRLKEPCKVILHTDSKYVQQGMTAWIYGWIKKGWKTADGSPVKNAELWKKLYEASKPHKI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
D W+KGH G + NE+ D +A
Sbjct: 121 DWVWVKGHDGIEGNERADFLANLGVEK 147
>gi|317009323|gb|ADU79903.1| ribonuclease H [Helicobacter pylori India7]
Length = 143
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 93/142 (65%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE+ TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEEFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLKVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|190570726|ref|YP_001975084.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|190356998|emb|CAQ54387.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 177
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALTA 62
++V YTDGACSGNPGPGGW ++ Y+ K +K ISGGE+ TTNN+MEL A I L
Sbjct: 4 KKVIIYTDGACSGNPGPGGWAAVVMYENKSVFIKKRISGGEENTTNNKMELKAVINGLKM 63
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK CKV+++TDS Y+ +G ++WI KW+ NGWKT+DKK VKN +LW + E + QH ++
Sbjct: 64 LKISCKVIVHTDSQYIKQGITEWINKWKTNGWKTADKKPVKNRELWQELDEVALQHDINW 123
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
W++ H GN NE+ DR+AR + + K
Sbjct: 124 KWVRAHNGNMYNEEADRLARKESKNLK 150
>gi|190570550|ref|YP_001974908.1| ribonuclease H [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|213019204|ref|ZP_03335011.1| ribonuclease H [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|190356822|emb|CAQ54189.1| ribonuclease H [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|212995313|gb|EEB55954.1| ribonuclease H [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 145
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 100/142 (70%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV YTDGACSGNPG GGW ++ ++ K I G E+ TTNN+MEL A I L LK+P
Sbjct: 4 KEVTIYTDGACSGNPGTGGWAAIILFQNHRKNICGREENTTNNKMELTAVINGLKVLKFP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LYTDS Y+ G ++WI KW+ NGWKTS+KK+VKNI+LW + A+ QH+++ W+K
Sbjct: 64 CNISLYTDSLYIKYGITEWINKWKMNGWKTSNKKSVKNIELWKELDNAALQHEINWNWVK 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
H G++ NE+ D +AR A ++
Sbjct: 124 AHNGDKYNEEADILARKAIINA 145
>gi|108563071|ref|YP_627387.1| ribonuclease H [Helicobacter pylori HPAG1]
gi|123246975|sp|Q1CTK9|RNH_HELPH RecName: Full=Ribonuclease H; Short=RNase H
gi|107836844|gb|ABF84713.1| ribonuclease H [Helicobacter pylori HPAG1]
Length = 143
Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK ISGGE+ TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCRITLYSDSQYVCQAINVWLVNWQ-----KKNFSKVKNVDLWKEFLKVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGH G+ ENE+ D +A+ A I
Sbjct: 116 KGHNGHAENERCDSLAKLEAQKRTKTI 142
>gi|297379861|gb|ADI34748.1| Ribonuclease H [Helicobacter pylori v225d]
Length = 154
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLTNWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKIEAQK 137
>gi|222824477|ref|YP_002576051.1| ribonuclease HI [Campylobacter lari RM2100]
gi|222539698|gb|ACM64799.1| ribonuclease HI [Campylobacter lari RM2100]
Length = 146
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +L YK K G + TTNNRMELMA IKAL ALK
Sbjct: 1 MKNIEIYTDGSCLNNPGYGGWAYILTYKNHTKEQCGACENTTNNRMELMAIIKALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LYTDS+ + + ++W++ W D K KNIDLW +++E + HK+ +W+
Sbjct: 61 PCVVKLYTDSNLMVQSINEWLEGWI-----KKDFKGKKNIDLWKEYLEVAKDHKITAFWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G++ NE+ D +ARNAA+ + +
Sbjct: 116 KAHNGHELNERCDELARNAALKLQEE 141
>gi|323705363|ref|ZP_08116938.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535265|gb|EGB25041.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
Length = 154
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++ +V YTDGACSGNPGPGGWG +L YK K SG E+ TTNNRMEL AAI+AL LK
Sbjct: 3 NMSDVTIYTDGACSGNPGPGGWGAILIYKDIVKEKSGYEENTTNNRMELTAAIEALKMLK 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS--DKKTVKNIDLWMKFVEASAQHKVDL 122
PCKV LY+DSSY+ F+Q +K V+N DLW+K ++ S+ H +
Sbjct: 63 RPCKVNLYSDSSYLINAFNQKWIDNWLKRGWIKSDNKTPVENKDLWLKLLDLSSIHNIKW 122
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
+KGHA N+ N + D++A + +
Sbjct: 123 IKVKGHADNEYNNRCDKLATDEIKKHQ 149
>gi|325108607|ref|YP_004269675.1| RNase HI [Planctomyces brasiliensis DSM 5305]
gi|324968875|gb|ADY59653.1| RNase HI [Planctomyces brasiliensis DSM 5305]
Length = 155
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYK--GKEKIISGGEKETTNNRMELMAAIKALTALKY 65
EV +TDGAC GNPGPGGW +LR+ +E+ SGG TTNN+MEL A I+ L ALK
Sbjct: 9 EVQLFTDGACRGNPGPGGWAFVLRHCATKQEREESGGAPVTTNNQMELQAVIEGLRALKR 68
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDK---KTVKNIDLWMKFVEASAQHKVDL 122
P +V + TDS YV KG +W+ W++NGWK +K K +KN + W E A+H V
Sbjct: 69 PVRVEVITDSQYVSKGCQEWLAGWKRNGWKRKEKGRLKPIKNEEHWRALDEQLARHDVSF 128
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
WI+GH G+ ENE+ D +A AA +F+
Sbjct: 129 TWIRGHTGHAENERCDELAVAAAETFR 155
>gi|302336108|ref|YP_003801315.1| ribonuclease H [Olsenella uli DSM 7084]
gi|301319948|gb|ADK68435.1| ribonuclease H [Olsenella uli DSM 7084]
Length = 204
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 94/148 (63%), Gaps = 7/148 (4%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+R V A+TDG+ GNPGPGG+G +L Y+ + S G + TTNNRMEL+ I A
Sbjct: 44 PMR-VVAWTDGSSRGNPGPGGYGAVLLYRDPAGVVHRREFSQGYRRTTNNRMELLGVIVA 102
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L AL+ PC+V +++DS YV F++ W + GW+ + K+ VKN+DLW + + A H
Sbjct: 103 LEALRRPCEVEVHSDSQYVCNAFNKNWVTGWLRRGWRNAQKQPVKNVDLWKRLLAAKEPH 162
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGHAG + NE+ D++A +AA
Sbjct: 163 QVSFVWVKGHAGTELNERCDQLATSAAD 190
>gi|303241576|ref|ZP_07328076.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
gi|302590894|gb|EFL60642.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
Length = 146
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGACSGNPG GGWG +LRY G+EK ISG EK TTNN+MEL AAI+AL LK
Sbjct: 1 MKNVIIYTDGACSGNPGDGGWGAVLRYGGREKEISGFEKNTTNNKMELTAAIEALNMLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS+Y+ F+Q + W+ NGW+ S K+ VKNI+LW + + HK+
Sbjct: 61 PCEVELYSDSAYLINAFNQNWLRGWKFNGWRNSSKEEVKNIELWKELDRLNNIHKIKWIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGH+ N+ N + D +A +
Sbjct: 121 VKGHSDNEYNNRCDILATGEIKKNR 145
>gi|229587082|ref|YP_002845583.1| ribonuclease H [Rickettsia africae ESF-5]
gi|228022132|gb|ACP53840.1| Ribonuclease H [Rickettsia africae ESF-5]
Length = 155
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C + +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 60 RILKKSCNIEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIVADKLAVQG 143
>gi|209526760|ref|ZP_03275282.1| Ribonuclease H [Arthrospira maxima CS-328]
gi|209492804|gb|EDZ93137.1| Ribonuclease H [Arthrospira maxima CS-328]
Length = 169
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGACSGNPG GG+G +L K ISGG + TTNNRME+MAAI AL ALK+PC
Sbjct: 7 KVTIYTDGACSGNPGKGGYGAVLMCGSHRKEISGGFRLTTNNRMEMMAAIAALRALKFPC 66
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYWIK 126
V LY+DS Y+ + K Q ++K + +H+V W+K
Sbjct: 67 SVTLYSDSKYLVDAMTLGWAKRWQKNGWRRNQKEWAKNPDLWAQLLGLCEEHQVRFVWVK 126
Query: 127 GHAGNQENEKVDRIARNA 144
GHAG++ENE DR+A A
Sbjct: 127 GHAGDRENEICDRLAVEA 144
>gi|154175247|ref|YP_001409227.1| ribonuclease H [Campylobacter curvus 525.92]
gi|187611356|sp|A7H185|RNH_CAMC5 RecName: Full=Ribonuclease H; Short=RNase H
gi|112803458|gb|EAU00802.1| RNase H [Campylobacter curvus 525.92]
Length = 149
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 93/146 (63%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C NPG GGW +L + G K SGG TTNN+MEL A I+ L ALK
Sbjct: 1 MKTVTLFSDGSCLNNPGAGGWAYILEFNGAVKKDSGGAAMTTNNQMELTAVIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDSSYV + W+ W + + SDKK VKNI+LW +++ S HKV WI
Sbjct: 61 PCEVRLFTDSSYVANAVNSWLDGWVKKNFIGSDKKPVKNIELWQEYLRVSRPHKVTASWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ +NE+ D +AR A F+N+
Sbjct: 121 KAHNGHPQNEECDTMAREKATKFQNE 146
>gi|331000110|ref|ZP_08323804.1| ribonuclease HI [Parasutterella excrementihominis YIT 11859]
gi|329572885|gb|EGG54508.1| ribonuclease HI [Parasutterella excrementihominis YIT 11859]
Length = 151
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 92/142 (64%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV +TDGA GNPGPGGWG ++YKG + GG TTNN+MEL A +AL LK
Sbjct: 1 MKEVEIWTDGASKGNPGPGGWGAWMKYKGHVLELCGGALSTTNNQMELTAPTEALCRLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PCKV+L+TDS YV +G + WI W + GWKT+D VKN +LW K EAS H+VD W+
Sbjct: 61 PCKVILHTDSKYVQQGMTAWIYGWIKKGWKTADGSPVKNAELWKKLYEASKPHEVDWVWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G + NE+ D +A
Sbjct: 121 KGHDGIEGNERADFLANLGVEK 142
>gi|317177478|dbj|BAJ55267.1| ribonuclease H [Helicobacter pylori F16]
Length = 154
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK+ISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKVISGGESFTTNNRMELKALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLINWQ-----KKNFSKVKNVDLWKEFLEVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKIEAQK 137
>gi|223041177|ref|ZP_03611429.1| ribonuclease HI [Campylobacter rectus RM3267]
gi|222877536|gb|EEF12665.1| ribonuclease HI [Campylobacter rectus RM3267]
Length = 145
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C NPGPGGW +L Y +K SGGE TTNN+MEL AAI+ L ALK
Sbjct: 1 MKTVCLFSDGSCLDNPGPGGWAYILEYGEHKKTASGGEAHTTNNQMELRAAIEGLKALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDSSYV + GW + K VKN+ LW +++ AS H+V+ W+
Sbjct: 61 PCRVKLYTDSSYVANAVN-----AWLEGWVKKNFKNVKNVPLWQEYLAASEPHEVEAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ +NE D +AR AV KN +
Sbjct: 116 KGHAGHPQNELCDEMAREQAVKIKNSL 142
>gi|91762743|ref|ZP_01264708.1| Ribonuclease H (RNase H) [Candidatus Pelagibacter ubique HTCC1002]
gi|91718545|gb|EAS85195.1| Ribonuclease H (RNase H) [Candidatus Pelagibacter ubique HTCC1002]
Length = 141
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 92/138 (66%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+C NPG GGW ++ G+ K ISG K+TTNN+MELMA I AL +K +
Sbjct: 2 IKIYTDGSCLNNPGNGGWAAIINQNGEVKEISGSVKDTTNNKMELMAPIMALKQIKQNDQ 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ +YTDS YV G ++W+ KW +N W+TS K+ VKN +LW++ E + Q ++ W+K H
Sbjct: 62 IEIYTDSQYVRLGITEWVYKWIKNNWQTSKKEPVKNKELWIQLYELTNQFEIKWIWVKAH 121
Query: 129 AGNQENEKVDRIARNAAV 146
AGN NE+VD +A+ AA
Sbjct: 122 AGNALNEEVDLLAKKAAE 139
>gi|219848804|ref|YP_002463237.1| Ribonuclease H [Chloroflexus aggregans DSM 9485]
gi|219543063|gb|ACL24801.1| Ribonuclease H [Chloroflexus aggregans DSM 9485]
Length = 241
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG+ GNPGPGG+GV+LRY K +SGG + TTNNRMELMA I L ALK
Sbjct: 82 PDTVVMYTDGSALGNPGPGGYGVVLRYNQHYKELSGGFRRTTNNRMELMACIAGLRALKR 141
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P +V++Y+DS YV + ++WQ W + + +N DLW + V+ H+V W
Sbjct: 142 PMRVVIYSDSKYVVDAVQEGWVQRWQAKNWMRTSTEPAQNADLWAELVQLCTIHQVQFVW 201
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+ GH+G +NE+ ++A AA
Sbjct: 202 VPGHSGVPDNERCHQLATAAAQQ 224
>gi|240137443|ref|YP_002961914.1| Ribonuclease H (RNase H) [Methylobacterium extorquens AM1]
gi|240007411|gb|ACS38637.1| Ribonuclease H (RNase H) [Methylobacterium extorquens AM1]
Length = 225
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGW +++ + GGE TTNNRMEL AAI+AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W+
Sbjct: 60 GAAIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTWV 118
Query: 126 KGHAGNQENEKVDRIA---RNAAVSFK 149
+GHAG NE+ DR+A R A+S K
Sbjct: 119 RGHAGEAGNERADRLATLGRREALSGK 145
>gi|260221008|emb|CBA29144.1| Ribonuclease H [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 166
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 76/140 (54%), Positives = 99/140 (70%), Gaps = 3/140 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+V YTDGAC GNPGPGGWGVLLR G EK + GGE TTNNRME+MA I+AL+ALK P
Sbjct: 7 KVVVYTDGACKGNPGPGGWGVLLRSADGTEKELFGGELGTTNNRMEMMAVIEALSALKRP 66
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLYW 124
C++ L+ DS YV KG ++W++ W+ GWKT+ K+ VKN+DLW + + A H +D W
Sbjct: 67 CQITLHIDSQYVLKGITEWLQGWKAKGWKTASKQPVKNVDLWQRLDALVSGAGHTIDWRW 126
Query: 125 IKGHAGNQENEKVDRIARNA 144
+KGHAG+ NE+ D +A
Sbjct: 127 VKGHAGDPGNERADGLANRG 146
>gi|258652639|ref|YP_003201795.1| ribonuclease H [Nakamurella multipartita DSM 44233]
gi|258555864|gb|ACV78806.1| Ribonuclease H [Nakamurella multipartita DSM 44233]
Length = 235
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ + ++DGAC GNPGPGGWG L+R + +SGGE TTNNRMEL A ++AL +L
Sbjct: 4 QRIQVWSDGACRGNPGPGGWGALIRVPGQPDVELSGGEPATTNNRMELRAVVEALRSLPA 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ ++ DS+YV G ++W+ W++NGW T K+ VKN+DLW E + +H VD W+
Sbjct: 64 GSQLTVHADSTYVLNGITKWLAGWRRNGWLTGSKQPVKNVDLWQDLDEQANRHTVDWQWV 123
Query: 126 KGHAGNQENEKVDRIARNA 144
KGHAG+ NE+ D +A
Sbjct: 124 KGHAGDPGNERADALANEG 142
>gi|213582094|ref|ZP_03363920.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 133
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 76/132 (57%), Positives = 97/132 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V L TDS YV +G +QWI W++ GWKT++KK VKN+DLW + A QH++ W+
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWV 121
Query: 126 KGHAGNQENEKV 137
KGHAG+ ENE+
Sbjct: 122 KGHAGHPENERC 133
>gi|187611429|sp|A8F2L0|RNH_RICM5 RecName: Full=Ribonuclease H; Short=RNase H
Length = 152
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/137 (46%), Positives = 87/137 (63%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL LK C
Sbjct: 4 KVVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRMLKKSC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H + W+KG
Sbjct: 64 NIEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTIIWKWVKG 123
Query: 128 HAGNQENEKVDRIARNA 144
HA N N D++A
Sbjct: 124 HANNSGNIAADKLAVQG 140
>gi|238650384|ref|YP_002916236.1| ribonuclease H [Rickettsia peacockii str. Rustic]
gi|238624482|gb|ACR47188.1| ribonuclease H [Rickettsia peacockii str. Rustic]
Length = 155
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 60 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAVQG 143
>gi|194333386|ref|YP_002015246.1| ribonuclease H [Prosthecochloris aestuarii DSM 271]
gi|238693321|sp|B4S5K2|RNH_PROA2 RecName: Full=Ribonuclease H; Short=RNase H
gi|194311204|gb|ACF45599.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271]
Length = 146
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPG GGWG LL + + ISG TTNNRMELMAAI+AL ALK P
Sbjct: 3 KKIIIYTDGACSGNPGKGGWGALLMFGELNREISGYSPATTNNRMELMAAIQALEALKEP 62
Query: 67 CKVLLYTDSSYVHKGFS-QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V LY+DSSY+ W+KKW GW T+ +K V+N DLW K ++ H V + +
Sbjct: 63 CDVDLYSDSSYLVNAIKLGWLKKWSSGGWTTASRKPVENQDLWKKILQLIKLHNVTFHKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGH+ N+ N + D +AR A + +
Sbjct: 123 KGHSDNEYNNRCDYLARQAIKNNR 146
>gi|317052129|ref|YP_004113245.1| ribonuclease H [Desulfurispirillum indicum S5]
gi|316947213|gb|ADU66689.1| Ribonuclease H [Desulfurispirillum indicum S5]
Length = 152
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
++ V YTDG+C GNPGPGG+ +L Y+ E+II G + TTNN+MELMA I+ L
Sbjct: 1 MKHVTMYTDGSCLGNPGPGGYAAILHYQDNRGAEHERIICGSAEHTTNNQMELMAVIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC+V +YTDS+YV +G + WI +W++NGWKT+ +K V N +LW + AQH++
Sbjct: 61 RALKSPCRVDIYTDSNYVRQGITAWIFQWKRNGWKTAGRKPVANRELWEELDSLIAQHQI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+W+KGH+G++ NE+ D IAR A K+++
Sbjct: 121 QWHWVKGHSGHEMNERCDDIARQQAQQMKDQM 152
>gi|218528927|ref|YP_002419743.1| ribonuclease H [Methylobacterium chloromethanicum CM4]
gi|218521230|gb|ACK81815.1| ribonuclease H [Methylobacterium chloromethanicum CM4]
Length = 228
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + Y DG C NPGPGGW +++ + GGE TTNNRMEL AAI+AL
Sbjct: 3 PMRTI-VYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFP 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W
Sbjct: 62 EGAAIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTW 120
Query: 125 IKGHAGNQENEKVDRIA---RNAAVSFK 149
++GHAG NE+ DR+A R A+S K
Sbjct: 121 VRGHAGEAGNERADRLATLGRREALSGK 148
>gi|163850369|ref|YP_001638412.1| ribonuclease H [Methylobacterium extorquens PA1]
gi|238687372|sp|A9W185|RNH_METEP RecName: Full=Ribonuclease H; Short=RNase H
gi|163661974|gb|ABY29341.1| ribonuclease H [Methylobacterium extorquens PA1]
Length = 228
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + Y DG C NPGPGGW +++ + GGE TTNNRMEL AAI+AL
Sbjct: 3 PMRTI-VYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFP 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W
Sbjct: 62 EGAAIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTW 120
Query: 125 IKGHAGNQENEKVDRIA---RNAAVSFK 149
++GHAG NE+ DR+A R A+S K
Sbjct: 121 VRGHAGEAGNERADRLATLGRREALSGK 148
>gi|317010881|gb|ADU84628.1| ribonuclease H [Helicobacter pylori SouthAfrica7]
Length = 143
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGEK TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEKFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCNITLYSDSQYVCQAINVWLINWQ-----KKNFAKVKNVDLWKEFLEVSQGHSIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ +NE+ D +A+ A
Sbjct: 116 KGHNGHAQNERCDSLAKLEAQK 137
>gi|217032490|ref|ZP_03437982.1| hypothetical protein HPB128_156g20 [Helicobacter pylori B128]
gi|298736359|ref|YP_003728885.1| ribonuclease HI [Helicobacter pylori B8]
gi|216945836|gb|EEC24457.1| hypothetical protein HPB128_156g20 [Helicobacter pylori B128]
gi|298355549|emb|CBI66421.1| ribonuclease HI [Helicobacter pylori B8]
Length = 143
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGENFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLKVSKGHLIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|68171356|ref|ZP_00544752.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88657670|ref|YP_507084.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
gi|123722801|sp|Q2GHJ9|RNH_EHRCR RecName: Full=Ribonuclease H; Short=RNase H
gi|67999227|gb|EAM85881.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88599127|gb|ABD44596.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
Length = 146
Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 72/137 (52%), Positives = 93/137 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L +V YTDGACSGNPGPGGW +L + EK I G + +TTNNRMEL A I+AL LK
Sbjct: 5 LNKVVIYTDGACSGNPGPGGWAAVLLFDDNEKTICGNDSDTTNNRMELTAVIEALKLLKV 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LYTDS YV G + WI+KW+ NGWKT++K VKN++LW++ + HKV YW+
Sbjct: 65 AYNVDLYTDSVYVKDGITLWIRKWKVNGWKTANKMPVKNLELWLELDSLANFHKVTWYWV 124
Query: 126 KGHAGNQENEKVDRIAR 142
+ H G+ N+K D +AR
Sbjct: 125 RAHVGDLYNQKADMLAR 141
>gi|77920454|ref|YP_358269.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
gi|77546537|gb|ABA90099.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
Length = 480
Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
V Y+DG+ + GPGG+GV+LRY EK +SG E T+ RMEL+AAI+ L
Sbjct: 285 TPPPPNVVEIYSDGSGR-DSGPGGYGVILRYGEHEKELSGFEPAATSQRMELLAAIRGLE 343
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL P KV +++DS Y+ +G SQW+ W + + N DLW + + S QH+V
Sbjct: 344 ALNKPQKVRVFSDSQYLVRGMSQWMHGWI-RDDRLETPGALANQDLWQQLLALSKQHEVS 402
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W++GHAG+ NE+ D++A+ A
Sbjct: 403 WEWVRGHAGHPFNERCDKLAKQAVEE 428
>gi|71892006|ref|YP_277736.1| ribonuclease H [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|123775291|sp|Q493H7|RNH_BLOPB RecName: Full=Ribonuclease H; Short=RNase H
gi|71796112|gb|AAZ40863.1| ribonuclease H [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 151
Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 71/141 (50%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG +LRYK +K S G + TTNNRMELMAAI AL +LK P
Sbjct: 3 KKIEIFTDGSCLGNPGPGGCAAILRYKQHKKEFSIGYRLTTNNRMELMAAIIALESLKNP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWI 125
C+++L TDS Y+ G +QWI W+++ WKTS++K VKNIDLW + A H + W+
Sbjct: 63 CQIILNTDSQYLLHGITQWIHIWKKHHWKTSEEKLVKNIDLWQRLDVAIQIHSIIHWNWL 122
Query: 126 KGHAGNQENEKVDRIARNAAV 146
K H G+ +NE+ D++AR AA
Sbjct: 123 KSHTGHPDNERCDQLARLAAK 143
>gi|165933678|ref|YP_001650467.1| ribonuclease H [Rickettsia rickettsii str. Iowa]
gi|165908765|gb|ABY73061.1| ribonuclease HI [Rickettsia rickettsii str. Iowa]
Length = 155
Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VLIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ K VKN DLW K ++H +
Sbjct: 60 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNKPVKNADLWQKLYTELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAVQG 143
>gi|169831980|ref|YP_001717962.1| ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
gi|169638824|gb|ACA60330.1| ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
Length = 153
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + EV YTDGACSGNPGPGGW ++ + ++G + +TTN RMEL+AAI++L
Sbjct: 3 EQPTMSEVVIYTDGACSGNPGPGGWAAVILDGVARRELTGSDPKTTNQRMELLAAIRSLQ 62
Query: 62 A-LKYPCKVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A + P +V LY+DS+Y+ F +W+QNGW + K+ V+N DLW + + + +H+
Sbjct: 63 ALGEEPRRVTLYSDSAYLVNCFRDRWYERWEQNGWVNAKKQPVQNRDLWEELLRLARRHR 122
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V IKGH N+ N + D +AR A
Sbjct: 123 VTFRKIKGHGSNELNNRADALARGA 147
>gi|15893031|ref|NP_360745.1| ribonuclease H [Rickettsia conorii str. Malish 7]
gi|34581281|ref|ZP_00142761.1| ribonuclease H [Rickettsia sibirica 246]
gi|15620232|gb|AAL03646.1| ribonuclease H [Rickettsia conorii str. Malish 7]
gi|28262666|gb|EAA26170.1| ribonuclease H [Rickettsia sibirica 246]
Length = 155
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C + +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 60 RILKKSCNIEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAVQG 143
>gi|332981970|ref|YP_004463411.1| RNase HI [Mahella australiensis 50-1 BON]
gi|332699648|gb|AEE96589.1| RNase HI [Mahella australiensis 50-1 BON]
Length = 142
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGAC+ NPGPGGW +L YKG K I GGE TTNNRMEL AAIKAL ALK
Sbjct: 1 MKKVTIYTDGACTNNPGPGGWAAILDYKGCVKEIYGGEPLTTNNRMELTAAIKALEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNG-WKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC V LY+DS+Y+ F+Q WKT V+N DLW + VE + H++
Sbjct: 61 PCYVELYSDSAYLINAFNQHWVNKWMRNGWKTISGDPVENKDLWERLVELTKMHEIKWVK 120
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+KGH+ N+ N + D +A+NA
Sbjct: 121 VKGHSDNEYNNRCDELAKNAIR 142
>gi|149173514|ref|ZP_01852144.1| ribonuclease H [Planctomyces maris DSM 8797]
gi|148847696|gb|EDL62029.1| ribonuclease H [Planctomyces maris DSM 8797]
Length = 164
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 92/155 (59%), Gaps = 5/155 (3%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKA 59
D L V +TDGAC GNPGPGGWGV+LR+ EK SGGE TTNN+MEL A I
Sbjct: 7 DQDALPFVQIFTDGACRGNPGPGGWGVILRHPATGTEKEFSGGEAVTTNNQMELQAVISG 66
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKT---SDKKTVKNIDLWMKFVEASA 116
L LK +V + TDS YV KG +W+ W++N W+ K VKN +LW K
Sbjct: 67 LELLKRTSRVEVITDSVYVAKGSKEWMPNWKKNNWRRREGKSWKPVKNEELWRKLDVLLE 126
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+H+V IKGH+G+ ENE+ D +A A+ +++
Sbjct: 127 RHEVRFTQIKGHSGHPENERCDELAVEFALKLQSE 161
>gi|71082834|ref|YP_265553.1| ribonuclease H (RNase H) [Candidatus Pelagibacter ubique HTCC1062]
gi|71061947|gb|AAZ20950.1| Ribonuclease H (RNase H) [Candidatus Pelagibacter ubique HTCC1062]
Length = 141
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 92/138 (66%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+C NPG GGW ++ G+ K ISG K+TTNN+MELMA I AL +K +
Sbjct: 2 IKIYTDGSCLNNPGNGGWAAIINQNGEVKEISGSVKDTTNNKMELMAPIMALKQIKQNDQ 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ +YTDS YV G ++W+ KW +N W+TS K+ VKN +LW++ E + Q ++ W+K H
Sbjct: 62 IEIYTDSQYVRLGITEWVHKWIKNNWQTSKKEPVKNKELWIQLYELTNQFEIKWIWVKAH 121
Query: 129 AGNQENEKVDRIARNAAV 146
AGN NE+VD +A+ AA
Sbjct: 122 AGNALNEEVDLLAKKAAE 139
>gi|118602401|ref|YP_903616.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|187611403|sp|A1AW38|RNH_RUTMC RecName: Full=Ribonuclease H; Short=RNase H
gi|118567340|gb|ABL02145.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 146
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA-LTALK 64
+ ++ YTDG C GNPG GGWGV L+Y +K + G +++TTNN+MEL A IKA
Sbjct: 1 MNKIIIYTDGGCRGNPGIGGWGVWLKYGDYDKKLQGVQQDTTNNQMELTATIKALEVIKS 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ L+TDS YV G S+WIK W+ GWKT++KK VKNIDLW + + QH V +W
Sbjct: 61 NDIAIDLFTDSKYVITGISEWIKNWKAKGWKTANKKPVKNIDLWQRLDVLNNQHNVTWHW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGH+G++ N+ D +A A
Sbjct: 121 VKGHSGDKGNDMADALANLAMDKI 144
>gi|319760361|ref|YP_004124299.1| ribonuclease H [Candidatus Blochmannia vafer str. BVAF]
gi|318039075|gb|ADV33625.1| ribonuclease H [Candidatus Blochmannia vafer str. BVAF]
Length = 164
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG +LRYK +K S G TTNNRMELMAAI AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGPGGCAAILRYKQYKKEFSAGYYLTTNNRMELMAAIIALESLKNP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV-DLYWI 125
C+V LY+DS Y+ G +QWI W+++ WKT+++K +KNIDLW + A H + + +W+
Sbjct: 63 CQVTLYSDSQYLLIGITQWIHIWKKHHWKTAEEKLIKNIDLWRRLNSAIHSHSIKNWHWL 122
Query: 126 KGHAGNQENEKVDRIARNAAV 146
K H G+ NE+ D++AR AA
Sbjct: 123 KSHTGHPSNERCDQLARKAAK 143
>gi|307637351|gb|ADN79801.1| Ribonuclease HI [Helicobacter pylori 908]
gi|325995943|gb|ADZ51348.1| Ribonuclease HI [Helicobacter pylori 2018]
gi|325997537|gb|ADZ49745.1| Ribonuclease HI [Helicobacter pylori 2017]
Length = 143
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLTNWQ-----KKNFAKVKNVDLWKEFLKVSKGHLIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|320536287|ref|ZP_08036330.1| ribonuclease HI [Treponema phagedenis F0421]
gi|320146847|gb|EFW38420.1| ribonuclease HI [Treponema phagedenis F0421]
Length = 151
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 6/153 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRME---LMAA 56
M+++ L + YTDGACSGNPGPGGW ++ + S GEK TTNNRME ++ A
Sbjct: 1 MNTESL--IEVYTDGACSGNPGPGGWAFVMVIDGKEPFTQSAGEKLTTNNRMELAAVINA 58
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++A++ ++ LYTDS YV G ++WI+KW++NGWKT+ K+ VKN DLW+ + S+
Sbjct: 59 LQAISQNYASARICLYTDSQYVKNGITEWIQKWKKNGWKTASKQPVKNQDLWLLLDKLSS 118
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ K + W+KGHAGN+ NE D +A AA S K
Sbjct: 119 ELKPEWNWVKGHAGNKFNELCDELAVAAAQSVK 151
>gi|317012479|gb|ADU83087.1| ribonuclease H [Helicobacter pylori Lithuania75]
Length = 143
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGENFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLKVSKGHLIMAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|258510460|ref|YP_003183894.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477186|gb|ACV57505.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 145
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V YTDGACSGNPGPGGW +L++ G K +SGGE+ETTN RMEL A I+ L ALK PC
Sbjct: 5 TVILYTDGACSGNPGPGGWAAILQWNGHVKELSGGERETTNQRMELKAVIEGLKALKRPC 64
Query: 68 KVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V++++DS+YV F Q W++NGW S + V+N DLW + +EA H+V +K
Sbjct: 65 DVIVHSDSAYVVNCFKQRWYVNWRKNGWINSKGEPVQNRDLWEQLLEAIDGHRVRFEKVK 124
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG + NE+ D +AR+A
Sbjct: 125 GHAGVKWNERCDELARSAI 143
>gi|319942611|ref|ZP_08016919.1| ribonuclease H [Sutterella wadsworthensis 3_1_45B]
gi|319803790|gb|EFW00722.1| ribonuclease H [Sutterella wadsworthensis 3_1_45B]
Length = 158
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 1 MDSKHLREV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
M V +TDGAC NPG GGWG L + + GG TTNN+MEL A I+A
Sbjct: 1 MTHAPTPTVLEIWTDGACKKNPGVGGWGAWLVWGKYTLELYGGSALTTNNQMELTAVIRA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L+A+K PC ++++ DSSYV G ++WI W++NGW+T+DKK VKN +LW + +QH+
Sbjct: 61 LSAVKRPCPIIIHLDSSYVKDGITRWIHGWKKNGWRTADKKPVKNGELWQELDRLVSQHQ 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+D W+KGHAG+ NEK D +A + + +
Sbjct: 121 IDWRWVKGHAGDPGNEKADALANLGVEAARGE 152
>gi|109947400|ref|YP_664628.1| ribonuclease H [Helicobacter acinonychis str. Sheeba]
gi|123173430|sp|Q17XJ7|RNH_HELAH RecName: Full=Ribonuclease H; Short=RNase H
gi|109714621|emb|CAJ99629.1| rnhA [Helicobacter acinonychis str. Sheeba]
Length = 143
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGEK TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEKFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F+E S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLIGWQ-----KKNFAKVKNVDLWKEFLEVSKGHSIVAIWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ +NE+ D +A+ A
Sbjct: 116 KGHNGHAQNERCDSLAKLEAQK 137
>gi|157828953|ref|YP_001495195.1| ribonuclease H [Rickettsia rickettsii str. 'Sheila Smith']
gi|157801434|gb|ABV76687.1| ribonuclease H [Rickettsia rickettsii str. 'Sheila Smith']
Length = 155
Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VLIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 60 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYTELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAVQG 143
>gi|325290304|ref|YP_004266485.1| RNase HI [Syntrophobotulus glycolicus DSM 8271]
gi|324965705|gb|ADY56484.1| RNase HI [Syntrophobotulus glycolicus DSM 8271]
Length = 148
Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats.
Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPGPGGW +L+Y K ISG +++TN MEL A I+AL L P
Sbjct: 3 KTVDIYTDGACSGNPGPGGWAAVLKYGETIKEISGFSRDSTNQVMELTAVIEALERLSEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L++DS+YV F Q +KWQ+NGW + KK V N DLW + ++ +H+++ +
Sbjct: 63 CAVRLFSDSAYVINAFRQNWLEKWQKNGWLNTAKKPVANQDLWKRLLQVVNKHELEWIKV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+ N N + D +AR A S
Sbjct: 123 KGHSDNFYNNRCDFLARKAIES 144
>gi|255321782|ref|ZP_05362937.1| ribonuclease HI [Campylobacter showae RM3277]
gi|255301262|gb|EET80524.1| ribonuclease HI [Campylobacter showae RM3277]
Length = 145
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C NPGPGGW +L Y +K SGG+ TTNN+MEL AAI+ L ALK
Sbjct: 1 MKTVCLFSDGSCLDNPGPGGWAYILEYGEHKKTASGGQAHTTNNQMELRAAIEGLKALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDSSYV + GW K VKN+ LW +++ AS H+V+ W+
Sbjct: 61 PCRVKLYTDSSYVANAVN-----AWLEGWVKKSFKNVKNVPLWQEYLSASEPHEVEAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ +NE D +AR AV KN +
Sbjct: 116 KGHAGHPQNELCDEMAREQAVKIKNSL 142
>gi|46203334|ref|ZP_00051665.2| COG0328: Ribonuclease HI [Magnetospirillum magnetotacticum MS-1]
Length = 222
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGWGV+++ + GGE+ T NNRMEL AAI+AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWGVVIQDPTGWIELHGGERATNNNRMELTAAIRALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W+
Sbjct: 60 GAAIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTWV 118
Query: 126 KGHAGNQENEKVDRIARNA 144
+GHAG NE+ DR+A
Sbjct: 119 RGHAGEDGNERADRLATLG 137
>gi|289523611|ref|ZP_06440465.1| ribonuclease HI [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503303|gb|EFD24467.1| ribonuclease HI [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 176
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDGAC GNPGPGG+GV+L Y G K ISGG + TTNNRME+ AAI L+ALK CK
Sbjct: 23 VTIYTDGACLGNPGPGGYGVVLLYNGHRKEISGGFRLTTNNRMEIYAAIAGLSALKCRCK 82
Query: 69 VLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS Y+ ++ W+K+W+ NGW + K+ N+DLW + + +H+V+ W++G
Sbjct: 83 VKLYTDSRYLADAMNKGWVKRWKANGWMRNKKERALNVDLWEQLLRLCEKHEVEFLWVRG 142
Query: 128 HAGNQENEKVDRIARNAAV 146
H GN ENE+ D+++ AA
Sbjct: 143 HDGNVENERCDQLSTTAAR 161
>gi|254559621|ref|YP_003066716.1| ribonuclease H [Methylobacterium extorquens DM4]
gi|254266899|emb|CAX22698.1| Ribonuclease H (RNase H) [Methylobacterium extorquens DM4]
Length = 225
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGW +++ + GGE TTNNRMEL AAI+AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W+
Sbjct: 60 GAAIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTWV 118
Query: 126 KGHAGNQENEKVDRIA---RNAAVSFK 149
+GHAG NE+ DR+A R A+S K
Sbjct: 119 RGHAGEAGNERADRLATLGRREALSGK 145
>gi|308182849|ref|YP_003926976.1| ribonuclease H [Helicobacter pylori PeCan4]
gi|308065034|gb|ADO06926.1| ribonuclease H [Helicobacter pylori PeCan4]
Length = 143
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK ISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKVLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLVNWQ-----KKNFAKVKNVDLWKEFLKVSKGHLIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|308184449|ref|YP_003928582.1| ribonuclease H [Helicobacter pylori SJM180]
gi|308060369|gb|ADO02265.1| ribonuclease H [Helicobacter pylori SJM180]
Length = 143
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKVLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +F++ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLINWQ-----KKNFAKVKNVDLWKEFLKVSKGHLIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|313683638|ref|YP_004061376.1| RNAase hi [Sulfuricurvum kujiense DSM 16994]
gi|313156498|gb|ADR35176.1| RNase HI [Sulfuricurvum kujiense DSM 16994]
Length = 144
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+ GNPGPGG+G +LRY KE+II GGE TTNNRMEL+ I+ L ALK
Sbjct: 1 MKKITLFSDGSALGNPGPGGYGAILRYGDKERIIRGGEAHTTNNRMELLGVIEGLRALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V + +DSSYV KG ++W++ W + + + +++ SA H+++ W+
Sbjct: 61 PCDVTIISDSSYVIKGINEWLEGWIKRNFAKVKNPDLWQ-----EYIRVSAPHRIEGVWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
+GH G+ ENE+ D IA+ A FK +
Sbjct: 116 RGHNGHIENEQCDVIAKEEAEKFKKGL 142
>gi|218289437|ref|ZP_03493671.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
gi|218240543|gb|EED07724.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
Length = 145
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 70/139 (50%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V YTDGACSGNPGPGGW +L++ G K +SGGE ETTN RMEL A I+ L ALK PC
Sbjct: 5 TVILYTDGACSGNPGPGGWAAILQWNGHVKELSGGEPETTNQRMELKAVIEGLKALKRPC 64
Query: 68 KVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V++++DS+YV F Q W++NGW S + V+N DLW + ++A H+V +K
Sbjct: 65 DVIVHSDSAYVVNCFKQRWYVNWRKNGWMNSKGEPVQNRDLWEELLDAINGHRVRFEKVK 124
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAG + NE+ D +AR+A
Sbjct: 125 GHAGEKWNERCDELARSAI 143
>gi|224438392|ref|ZP_03659319.1| ribonuclease H [Helicobacter cinaedi CCUG 18818]
gi|313144834|ref|ZP_07807027.1| ribonuclease H [Helicobacter cinaedi CCUG 18818]
gi|313129865|gb|EFR47482.1| ribonuclease H [Helicobacter cinaedi CCUG 18818]
Length = 147
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 95/141 (67%), Gaps = 5/141 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V Y DG+ GNPG GGW +L +K K+KI+SGGE TTNNRMEL+A I++L ALK
Sbjct: 1 MKQVTLYCDGSSLGNPGAGGWCGILCFKDKQKILSGGEPYTTNNRMELLAVIESLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LY+DS YV G + W+K W D K VKN+DLW +++ S+ H V +W+
Sbjct: 61 PCVVDLYSDSKYVCDGINSWLKNWVA-----KDFKNVKNVDLWQSYLQVSSLHSVTAHWV 115
Query: 126 KGHAGNQENEKVDRIARNAAV 146
KGHAG+ +NE D +A+ AA
Sbjct: 116 KGHAGHPQNELCDSLAKQAAK 136
>gi|71901533|ref|ZP_00683618.1| Ribonuclease H [Xylella fastidiosa Ann-1]
gi|71728720|gb|EAO30866.1| Ribonuclease H [Xylella fastidiosa Ann-1]
Length = 150
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 102/143 (71%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
HAYTDG+C GNPGPGGW VLLRYK EK + GGE +TTNNRMELMAAI AL L PC++
Sbjct: 5 HAYTDGSCLGNPGPGGWAVLLRYKNNEKELVGGELDTTNNRMELMAAIMALERLSEPCQI 64
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L+TDS YV +G ++W+ W + GWKT+ VKN DLW + A+ +H V+ W+K H
Sbjct: 65 KLHTDSQYVRQGITEWMSGWVRRGWKTAAGDPVKNRDLWERLCAATQRHMVEWCWVKAHN 124
Query: 130 GNQENEKVDRIARNAAVSFKNKI 152
G+ +NE+VD +AR A++ ++ +
Sbjct: 125 GDSDNERVDVLARGQAMAQRSTV 147
>gi|329889542|ref|ZP_08267885.1| RNase H family protein [Brevundimonas diminuta ATCC 11568]
gi|328844843|gb|EGF94407.1| RNase H family protein [Brevundimonas diminuta ATCC 11568]
Length = 150
Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats.
Identities = 79/146 (54%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKG-KEKIISGGEKETTNNRMELMAAIKALTALKY 65
V +TDGAC GNPGPGGWG +L+ G EK + GGE TTNNRMELMAAI AL ALK
Sbjct: 5 DHVIIHTDGACKGNPGPGGWGAILQTGGGHEKELWGGESLTTNNRMELMAAIMALEALKR 64
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV +G ++WI+ W+ GWKT+DKK VKN DLW + EA +H+V +W+
Sbjct: 65 PCRVDLHTDSKYVMQGVTEWIRGWKARGWKTADKKPVKNEDLWRRLDEARNRHEVKWHWV 124
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ NE+ D +A + +
Sbjct: 125 KGHAGHALNERADGLANRGVAEMRGR 150
>gi|254779352|ref|YP_003057457.1| ribonuclease H [Helicobacter pylori B38]
gi|254001263|emb|CAX29240.1| Ribonuclease H (RNase H) [Helicobacter pylori B38]
Length = 143
Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKVLKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +FV+ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKEFVKVSKGHLIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQK 137
>gi|304316826|ref|YP_003851971.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778328|gb|ADL68887.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 149
Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++ E+ YTDGACSGNPGPGGWG +L Y G +K ISG E+ TTNNRMEL A IKAL+ LK
Sbjct: 3 NIPEIDIYTDGACSGNPGPGGWGAVLIYNGIKKEISGYEENTTNNRMELTAVIKALSLLK 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
CK+ +Y+DSSY+ F+Q + WQ+ GW SDK V+N DLW+K ++ S+ H +
Sbjct: 63 RSCKINIYSDSSYLINAFNQKWIENWQKRGWLKSDKTPVENKDLWLKLLDLSSCHDIKWI 122
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A +
Sbjct: 123 KVKGHSDNEYNNRCDKLATDEIRKH 147
>gi|157964869|ref|YP_001499693.1| ribonuclease H [Rickettsia massiliae MTU5]
gi|157844645|gb|ABV85146.1| Ribonuclease H [Rickettsia massiliae MTU5]
Length = 155
Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats.
Identities = 64/137 (46%), Positives = 87/137 (63%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V YTDGAC+GNPGPGGWG LL++ K + G E +TTNNRME+ AA++AL LK C
Sbjct: 7 KVVIYTDGACAGNPGPGGWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRMLKKSC 66
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H + W+KG
Sbjct: 67 NIEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTIIWKWVKG 126
Query: 128 HAGNQENEKVDRIARNA 144
HA N N D++A
Sbjct: 127 HANNSGNIAADKLAVQG 143
>gi|226357458|ref|YP_002787197.1| ribonuclease H [Deinococcus deserti VCD115]
gi|226319448|gb|ACO47443.1| putative ribonuclease H [Deinococcus deserti VCD115]
Length = 160
Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M L V TDGACSGNPGPGGW +L K +SGGE TTNNRMEL A ++ L
Sbjct: 1 MPDAPLPTVRLVTDGACSGNPGPGGWACILTADTHTKELSGGEGRTTNNRMELTALLEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC V + +DS YV F + Q + K DLW ++A+ H++
Sbjct: 61 RALKKPCAVHVVSDSRYVIDAFEKDWLSNWQRKNWKNVKNP----DLWQALLQAAQGHRL 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W++GHAG+ ENE+ D++A A +
Sbjct: 117 TFEWVQGHAGHPENERADQLAVQARDAAAK 146
>gi|123424234|ref|XP_001306538.1| RNase H family protein [Trichomonas vaginalis G3]
gi|121888118|gb|EAX93608.1| RNase H family protein [Trichomonas vaginalis G3]
Length = 280
Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats.
Identities = 62/137 (45%), Positives = 84/137 (61%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDGACSGNPGPGGWGV + G + GG K+TTN RMELMAAI+ ++
Sbjct: 17 KPVDVYTDGACSGNPGPGGWGVFCQQNGNSYKLGGGSKDTTNQRMELMAAIEGISLFPRC 76
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ +YTDS YV G + W++ W+ GWK SD V N++LW + + ++ H V W+K
Sbjct: 77 FSLNVYTDSKYVFNGITDWVRGWKSRGWKKSDGGKVLNLELWKRLDQVNSDHTVSWKWVK 136
Query: 127 GHAGNQENEKVDRIARN 143
GH+ N N D+IA
Sbjct: 137 GHSVNHGNNMADQIAVA 153
>gi|114567624|ref|YP_754778.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317472|sp|Q0AV47|RNH_SYNWW RecName: Full=Ribonuclease H; Short=RNase H
gi|114338559|gb|ABI69407.1| RNase HI [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 146
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-ALK 64
++E+ YTDGACSGNPGPGGWG +L Y +K I+G E +TTN RMELMA I+AL
Sbjct: 1 MKEIIIYTDGACSGNPGPGGWGAVLAYGEHQKEIAGAEADTTNQRMELMAVIEALKAIKG 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++ +Y+DS+Y + + WQ+NGWK S K+ V N DLW + +++V +
Sbjct: 61 SGWEIRVYSDSAYFINAIQKGWLENWQRNGWKNSKKEDVANQDLWKALIPLLRKNRVRVE 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+G++ NE+ D++ARNA S
Sbjct: 121 KVKGHSGDRWNERCDQLARNAIKSL 145
>gi|157826199|ref|YP_001493919.1| ribonuclease H [Rickettsia akari str. Hartford]
gi|189043706|sp|A8GPT6|RNH_RICAH RecName: Full=Ribonuclease H; Short=RNase H
gi|157800157|gb|ABV75411.1| ribonuclease H [Rickettsia akari str. Hartford]
Length = 152
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+SK V YTDGAC+GNPGPGGWG LL++ K I G E +TTNNRME+ AA +AL
Sbjct: 1 MNSK----VVIYTDGACAGNPGPGGWGALLKFNDASKEIFGYELDTTNNRMEITAAFEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 57 KILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 IWKWVKGHANNSGNIAADKLAVQG 140
>gi|257063763|ref|YP_003143435.1| ribonuclease HI [Slackia heliotrinireducens DSM 20476]
gi|256791416|gb|ACV22086.1| ribonuclease HI [Slackia heliotrinireducens DSM 20476]
Length = 161
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTA 62
V Y+DG+ GNPGPGG+G +L Y K +S G TTNNRMEL+ I AL A
Sbjct: 2 HVEIYSDGSSRGNPGPGGYGSVLHYTDAQGQLHVKELSQGFVTTTNNRMELLGVIVALEA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVD 121
LK PC V +Y+DS YV K F+ + KK + + A A H+V
Sbjct: 62 LKRPCSVDVYSDSQYVVKAFNDHWIDGWLKRGWKNSKKERVKNQDLWRRLLAAKAPHQVS 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG+ ENE+ D++A AA
Sbjct: 122 FHWVKGHAGHPENERCDQLATEAAD 146
>gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Enhydrobacter aerosaccus SK60]
gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Enhydrobacter aerosaccus SK60]
Length = 595
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 11 AYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AYTDGAC GNPG GG+G V++ G++ I GGE TTNNRMELM AI AL +
Sbjct: 41 AYTDGACRGNPGKGGFGAVVILPTGEQIDICGGEAHTTNNRMELMGAIAALENSPKALPI 100
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+++DSSYV KG S+W+ W++ WK N++LW + + Q ++D W+KGHA
Sbjct: 101 QIWSDSSYVIKGISEWLAGWKKKHWKNVK-----NVELWQRLDKLCEQRQIDWQWVKGHA 155
Query: 130 GNQENEKVDRIARNAAVSF 148
G+ NE D++A
Sbjct: 156 GHDGNEYADKLANQGIDQL 174
>gi|51244762|ref|YP_064646.1| ribonuclease H [Desulfotalea psychrophila LSv54]
gi|50875799|emb|CAG35639.1| probable ribonuclease H [Desulfotalea psychrophila LSv54]
Length = 261
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDG CSGNPGPGG+G ++ K +SGG + TTNNRME+MA I L L
Sbjct: 106 DRILMYTDGGCSGNPGPGGYGTVILDGDKRIELSGGYRRTTNNRMEMMACIAGLLRLGET 165
Query: 67 C-KVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ +Y+DS YV S+ W++ GW+ +D K N DLW F+ ++V YW
Sbjct: 166 SKPISIYSDSRYVVNSISKGWAAGWRRRGWQKADGKPALNADLWKIFLSLCEDNQVSFYW 225
Query: 125 IKGHAGNQENEKVDRIARNAA 145
+KGHAG++ NE+ D++A +AA
Sbjct: 226 VKGHAGHEFNERCDQLAVSAA 246
>gi|15604563|ref|NP_221081.1| ribonuclease H [Rickettsia prowazekii str. Madrid E]
gi|6685894|sp|Q9ZCK3|RNH_RICPR RecName: Full=Ribonuclease HI; Short=RNase HI
gi|3861258|emb|CAA15157.1| RIBONUCLEASE H (rnhA) [Rickettsia prowazekii]
gi|292572370|gb|ADE30285.1| Ribonuclease H [Rickettsia prowazekii Rp22]
Length = 152
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGACSGNPGPGGWG LL + K I G E TTNNRME+ AA++AL
Sbjct: 1 MDSK----VVIYTDGACSGNPGPGGWGALLHFNDTSKKIFGYELVTTNNRMEMTAALEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK V +YTDS Y+ G + WI W +N W S+ VKN DLW K ++H +
Sbjct: 57 RILKKSSVVEIYTDSKYLQHGITVWIHNWIKNNWCKSNNAPVKNADLWQKLYSELSKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 MWKWVKGHASNSGNIAADKLAVQG 140
>gi|241068559|ref|XP_002408469.1| ribonuclease H, putative [Ixodes scapularis]
gi|215492457|gb|EEC02098.1| ribonuclease H, putative [Ixodes scapularis]
Length = 152
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K I G E +TTNNRME+ AA++AL
Sbjct: 1 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEIFGHELDTTNNRMEITAALEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K +H +
Sbjct: 57 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELNKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 IWKWVKGHANNSGNIAADKLAMQG 140
>gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4]
gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4]
Length = 484
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
V Y DG+ + GPGG+GV+LRY EK +SG E +T+ RMEL AAI+ L
Sbjct: 285 TPPPPGVVEIYCDGSGR-DSGPGGYGVILRYGEHEKELSGFEAASTSQRMELTAAIRGLE 343
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL P +V +++DS Y+ +G S+W+ W + G +KN DLW K SA H+V
Sbjct: 344 ALHKPRRVRVFSDSQYLVRGMSEWLHGWIRTGRL-ETPDALKNQDLWQKLSALSANHEVT 402
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W++GH G+ NE+ DR+A+ AA +
Sbjct: 403 WEWVRGHDGHPFNERCDRLAKRAAEAGIR 431
>gi|225849979|ref|YP_002730213.1| ribonuclease HI [Persephonella marina EX-H1]
gi|225645485|gb|ACO03671.1| ribonuclease HI [Persephonella marina EX-H1]
Length = 145
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 95/145 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG+ GNPG GGW +LRY EK+I GG++ TTNN ME+ A ++AL LK
Sbjct: 1 MKKVEIFTDGSSLGNPGAGGWCAILRYNKHEKMIKGGKENTTNNEMEIKAVLEALKILKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ LY+DS YV K +WI W +N WKTS KK V + D+W + H+++ W+
Sbjct: 61 PCEIDLYSDSEYVVKAMKEWIHNWAKNNWKTSKKKDVAHKDMWQEIYRLMQIHRINPIWV 120
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
K HAG++ENE DRIA+ A F+
Sbjct: 121 KAHAGHRENEICDRIAKKEAEKFRR 145
>gi|291522209|emb|CBK80502.1| Ribonuclease HI [Coprococcus catus GD/7]
Length = 158
Score = 119 bits (297), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 84/145 (57%), Gaps = 6/145 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
V YTDGA GNPGPGG+G +L Y + K +S G + TTNNRMEL+ I AL AL
Sbjct: 3 VTIYTDGAARGNPGPGGYGAVLEYIDPKNQLHVKELSAGYRRTTNNRMELLGVIIALEAL 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVDL 122
PC V LY+DS YV F+Q + VKN+DLW + ++A A H V
Sbjct: 63 NRPCNVTLYSDSKYVVDAFNQHWVDGWVRKGWKRGKNEPVKNVDLWKRLLQAKAPHAVKF 122
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ +NE+ D +A AA +
Sbjct: 123 VWVKGHAGHPQNERCDELATYAADN 147
>gi|170743350|ref|YP_001772005.1| ribonuclease H [Methylobacterium sp. 4-46]
gi|168197624|gb|ACA19571.1| ribonuclease H [Methylobacterium sp. 4-46]
Length = 223
Score = 119 bits (297), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGWGV++ + GG+ +TNNRMEL AAI AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWGVVILAPEGPVELCGGDPRSTNNRMELTAAISALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T VKN DL + +A+ V W+
Sbjct: 60 GAAIEMRCDSQYVVKSVTEWLRGWKAKGWRT-TTGEVKNRDLMERLDALNARRDVRWVWV 118
Query: 126 KGHAGNQENEKVDRIARNA 144
+GHAG + NE+ DR+A
Sbjct: 119 RGHAGEEGNERADRLAAEG 137
>gi|323934289|gb|EGB30711.1| RNase H [Escherichia coli E1520]
Length = 157
Score = 119 bits (297), Expect = 1e-25, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 104/140 (74%), Gaps = 1/140 (0%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++DG+C NPG PGG+G++L+Y+G+E+ S G TTNNRME+M A+ L LKYPC
Sbjct: 2 KIFSDGSCLKNPGGPGGYGIVLQYRGEEREFSDGFHSTTNNRMEMMGALIGLERLKYPCN 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+LY+DS Y+ G +QW+K W++NGW TSDKK VKN+DLW + EA+++H V W+KGH
Sbjct: 62 VILYSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKNVDLWKRLDEAASRHNVRWKWVKGH 121
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG++ENE DR+A+ AA S
Sbjct: 122 AGHRENEICDRLAKIAAFSA 141
>gi|254440065|ref|ZP_05053559.1| RNase H [Octadecabacter antarcticus 307]
gi|198255511|gb|EDY79825.1| RNase H [Octadecabacter antarcticus 307]
Length = 149
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 6/150 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++AYTDGACSGNPGPGGWG +L + KE+ + GGE TTNNRMEL+AAI AL
Sbjct: 1 MADLYAYTDGACSGNPGPGGWGAVLIARDGDSVVKERDLKGGEAHTTNNRMELLAAINAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L P + + TDSSYV G ++WI W+ GWK + +KNIDLW + A +H V
Sbjct: 61 ETLSGPSTLTVVTDSSYVKDGITKWIYGWKAKGWKKKGGE-IKNIDLWQRLDAARDRHDV 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG+ ENE+ D +AR FK
Sbjct: 120 TWEWVKGHAGHPENERADELARAGMAPFKR 149
>gi|296116594|ref|ZP_06835204.1| ribonuclease H [Gluconacetobacter hansenii ATCC 23769]
gi|295976806|gb|EFG83574.1| ribonuclease H [Gluconacetobacter hansenii ATCC 23769]
Length = 164
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/140 (45%), Positives = 95/140 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDG C NPGPGGW LL+++G+E+ I+GGE ETTNNRMEL A +AL +LK PCK
Sbjct: 16 VLIWTDGGCKPNPGPGGWAALLQFRGQEREITGGEAETTNNRMELTAVAEALASLKRPCK 75
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+L++DS YV G ++W W + W+ + V N+DLW + ++ + +H + W++GH
Sbjct: 76 VILHSDSQYVCNGMTRWSTGWVRRKWRNASGDPVANMDLWQRLLDLAPRHDITWQWVRGH 135
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG++ NE+VD +A A +
Sbjct: 136 AGDENNERVDVLATQARDAL 155
>gi|261367049|ref|ZP_05979932.1| ribonuclease HI [Subdoligranulum variabile DSM 15176]
gi|282571169|gb|EFB76704.1| ribonuclease HI [Subdoligranulum variabile DSM 15176]
Length = 153
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 5/148 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALT 61
++ + YTDGACSGNPGPGGWG +LR++ + EK +SGGE +TTNNRME+ A ++AL
Sbjct: 1 MKHIEIYTDGACSGNPGPGGWGAILRFRARDKIFEKELSGGEAQTTNNRMEMTALLEALR 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKV 120
LK PC + LY+DS YV + K ++ K N DLW + S +H +
Sbjct: 61 QLKEPCAIELYSDSQYVINALEKGWAKGWRSRGWKKADKSPALNADLWDPLLAESEKHHL 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
+W+KGHAG+ ENE+ DR+A + +
Sbjct: 121 TYHWLKGHAGHPENERCDRMAVEQSKKY 148
>gi|225389086|ref|ZP_03758810.1| hypothetical protein CLOSTASPAR_02832 [Clostridium asparagiforme
DSM 15981]
gi|225044850|gb|EEG55096.1| hypothetical protein CLOSTASPAR_02832 [Clostridium asparagiforme
DSM 15981]
Length = 160
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ V YTDG+ GNP GPGG+GV+L + EK +SGG TTNNRMELMAAI
Sbjct: 1 MTNVQIYTDGSARGNPDGPGGYGVVLHFTDSQGQLHEKTMSGGYVRTTNNRMELMAAIVG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC V LY+DS Y+ F+Q VKNIDLW + ++A +H
Sbjct: 61 LEALNRPCAVELYSDSKYLTDAFNQHWIDSWIAKNWNRGKSGPVKNIDLWKRLLKAKEKH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGHAG+ +NE+ D++A +AA
Sbjct: 121 QVRFIWVKGHAGHPQNERCDQLATSAAD 148
>gi|325284275|ref|YP_004256815.1| Ribonuclease H [Deinococcus proteolyticus MRP]
gi|324316339|gb|ADY27452.1| Ribonuclease H [Deinococcus proteolyticus MRP]
Length = 149
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGG+ +LRY +E+ + G ETTNNRMEL A I L AL+
Sbjct: 1 MKSVILHTDGACSGNPGPGGYAAILRYGERERAVCGYACETTNNRMELTAVIAGLQALRQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V + TDS YV GF+QW+ W + VKN DLW +EA+ H+V W+
Sbjct: 61 PCEVEIVTDSKYVADGFTQWLPGWA-----KKGFRKVKNADLWQALLEAAQPHQVRFTWV 115
Query: 126 KGHAGNQENEKVDRIA---RNAAVSFK 149
+GHAG+ +NE+ DR+A R+AA K
Sbjct: 116 RGHAGHPDNERADRLACEQRDAASKEK 142
>gi|187611355|sp|A8Z6F7|RNH_CAMC1 RecName: Full=Ribonuclease H; Short=RNase H
gi|158604916|gb|ABW74739.1| ribonuclease HI [Campylobacter concisus 13826]
Length = 144
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C GNPG GGW +LRY +K SGGE TTNN+MEL AAI L ALK
Sbjct: 1 MKIVTLFSDGSCLGNPGAGGWAYILRYNEAQKKASGGEAYTTNNQMELKAAIMGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDSSYV ++W+ WQ + K VKN++LW +++E S HKV W+
Sbjct: 61 PCEVRLFTDSSYVANSINEWLANWQ-----KRNFKNVKNVELWQEYLEISKPHKVVASWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG+ ENE+ D++ARN A+ K++
Sbjct: 116 KGHAGHPENEECDQMARNEALKIKDE 141
>gi|294670417|ref|ZP_06735299.1| hypothetical protein NEIELOOT_02136 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307881|gb|EFE49124.1| hypothetical protein NEIELOOT_02136 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 155
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 90/138 (65%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + V+ YTDGAC GNPG GGWG LLRY EK + GGE +TTNNRMEL A I+ L
Sbjct: 1 MQETTDKTVYLYTDGACKGNPGTGGWGALLRYGRHEKELFGGEAQTTNNRMELTAVIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK ++ ++TDS YV G WI W++NGWKT+ K+ VKN DLW + +H +
Sbjct: 61 KALKRRSRIEIHTDSQYVKNGMESWIHGWKKNGWKTAAKQPVKNEDLWRELDRLCGEHDI 120
Query: 121 DLYWIKGHAGNQENEKVD 138
W+KGHAG+ +NE+ D
Sbjct: 121 VWRWVKGHAGHTDNERAD 138
>gi|226324628|ref|ZP_03800146.1| hypothetical protein COPCOM_02412 [Coprococcus comes ATCC 27758]
gi|225207076|gb|EEG89430.1| hypothetical protein COPCOM_02412 [Coprococcus comes ATCC 27758]
Length = 157
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+GV+L Y + K +SGG TTNNRMELMA I+ L
Sbjct: 2 KVSIYTDGAARGNPDGPGGYGVVLEYVDPKGELHVKELSGGYVRTTNNRMELMAVIRGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC+V LY+DS YV F+Q + + VKN DLW + +EA H+V
Sbjct: 62 ALNRPCEVELYSDSQYVVNAFNQHWIEGWIKKGWKRGKNEPVKNTDLWKRLLEAKKPHQV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ W+KGH G+ +NE+ D +A AA + ++
Sbjct: 122 NFNWVKGHDGHPQNERCDTLATTAADGNELQV 153
>gi|294678937|ref|YP_003579552.1| ribonuclease H [Rhodobacter capsulatus SB 1003]
gi|294477757|gb|ADE87145.1| ribonuclease H-2 [Rhodobacter capsulatus SB 1003]
Length = 153
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 5/149 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKAL 60
+ +++A+TDGACSGNPGPGGWGVL+R K+K +SGGE +TTNNRMELMAAI AL
Sbjct: 1 MSDLYAWTDGACSGNPGPGGWGVLMRAMADGKILKQKELSGGEADTTNNRMELMAAISAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL P + + TDS+YV G W+ W++NGWKT+DKK VKN+DLW + A A+HKV
Sbjct: 61 EALTRPSALTITTDSAYVKNGIESWMHGWKRNGWKTADKKPVKNVDLWQRLDAAQARHKV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
WIKGHAG+ ENE+ D +AR +K
Sbjct: 121 VWKWIKGHAGHAENERADELARAGMAPYK 149
>gi|34558194|ref|NP_908009.1| ribonuclease H [Wolinella succinogenes DSM 1740]
gi|34483913|emb|CAE10909.1| RIBONUCLEASE HI [Wolinella succinogenes]
Length = 139
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + + DG+ GNPGPGG+ +LRY KE+II GGE+ETTNNRMEL A I++L LK
Sbjct: 1 MKRISLFCDGSSLGNPGPGGYCGILRYGEKERIIKGGERETTNNRMELKAVIESLKVLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L +DSSYV +G ++W+ GW + VKN DLW +++E S H+V W+
Sbjct: 61 PCVVELVSDSSYVVRGINEWL-----LGWVKKEFAKVKNPDLWREYLEVSKPHQVKAIWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GH G++ENE+ D IA++ A +
Sbjct: 116 RGHNGHEENERCDEIAKSEAQKQR 139
>gi|188580140|ref|YP_001923585.1| ribonuclease H [Methylobacterium populi BJ001]
gi|179343638|gb|ACB79050.1| ribonuclease H [Methylobacterium populi BJ001]
Length = 225
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + Y DG C NPGPGGWGV+++ + GG++ TTNNRMEL AAI+AL
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWGVVIQDPAGTVELHGGDRATTNNRMELTAAIRALEHFPE 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV K ++W++ W+ GW+T+ VKNIDL + +A V W+
Sbjct: 60 GASIEMRCDSQYVVKSVTEWMRGWKARGWRTAT-GPVKNIDLMQRLDALAAARDVRWTWV 118
Query: 126 KGHAGNQENEKVDRIA---RNAAVS 147
+GHAG NE+ DR+A R A+S
Sbjct: 119 RGHAGEAGNERADRLAALGRREALS 143
>gi|152989963|ref|YP_001355685.1| ribonuclease H [Nitratiruptor sp. SB155-2]
gi|151421824|dbj|BAF69328.1| ribonuclease HI [Nitratiruptor sp. SB155-2]
Length = 141
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 95/143 (66%), Gaps = 5/143 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V ++DG+ GNPGPGG+ +LRYK EKII GGE TTNNRMEL A I+ L ALK
Sbjct: 1 MKKVSLFSDGSSLGNPGPGGYCAILRYKDNEKIIKGGEPHTTNNRMELKAVIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +Y+DS+YV + + W+ W D K VKN DLW +F+E + H++ W+
Sbjct: 61 PCIVTVYSDSNYVVQAINSWLSGWI-----KKDFKNVKNPDLWKEFIEVAKPHRIKAVWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH+G++ENE+ D+IA+ A
Sbjct: 116 KGHSGHEENERCDKIAKEMAKEA 138
>gi|187611431|sp|Q5PBQ8|RNH_ANAMM RecName: Full=Ribonuclease H; Short=RNase H
Length = 154
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 75/136 (55%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGACSGNPGPGGWG +LR+ E+ ISGG +TTNNRMEL A I AL AL P
Sbjct: 8 RVAIYTDGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMALAALSGP 67
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS+YV G ++WI+KW+ NGW+TS+K VKN+DLW++ + H ++ W+K
Sbjct: 68 CSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVELERLTLLHSIEWRWVK 127
Query: 127 GHAGNQENEKVDRIAR 142
HAGN+ NE+ D +AR
Sbjct: 128 AHAGNEYNEEADMLAR 143
>gi|269926560|ref|YP_003323183.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
gi|269790220|gb|ACZ42361.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
Length = 159
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V +TDG C NPGPGGW ++RY + + ISGGE+ TTNNRME+ A IKAL AL
Sbjct: 1 MKKVIIHTDGGCEPNPGPGGWAAVIRYNSEVQEISGGEENTTNNRMEMTAVIKALEALHE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P +V LYTDS Y+ KG +W+ W+ G +VKN DLW + E ++H V YW+
Sbjct: 61 PHEVELYTDSEYLCKGMMEWLPMWKAKGRLQK--GSVKNADLWQRIDELMSRHLVKCYWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAGN +NE+ D++A +
Sbjct: 119 KGHAGNTDNERCDKLAYEEIKKIYKQ 144
>gi|149196252|ref|ZP_01873307.1| ribonuclease H [Lentisphaera araneosa HTCC2155]
gi|149140513|gb|EDM28911.1| ribonuclease H [Lentisphaera araneosa HTCC2155]
Length = 155
Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV TDGAC GNPGPGG+G +L + K + G + TTNNRME++A IK L ALK
Sbjct: 3 KEVLLATDGACKGNPGPGGYGTILIFNQYRKEFAEGFRLTTNNRMEMLAVIKGLEALKES 62
Query: 67 CKVLLYTDSSYV-HKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CKV + +DS Y+ KWQ GW + KK KN DLW + A+H+V+ W+
Sbjct: 63 CKVKVLSDSKYIVDNVKGGHPWKWQARGWVLASKKPAKNSDLWEDLLNLLAKHEVEFEWV 122
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G++ N++ D +A AA
Sbjct: 123 KGHSGHELNDRADELATGAAEQ 144
>gi|256422665|ref|YP_003123318.1| ribonuclease H [Chitinophaga pinensis DSM 2588]
gi|256037573|gb|ACU61117.1| ribonuclease H [Chitinophaga pinensis DSM 2588]
Length = 151
Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ EV YTDG+ GNPGPGG+GV+L + K +S G + TTNNRMELMA I AL ALK
Sbjct: 1 MSEVIIYTDGSSRGNPGPGGYGVVLMWNSVRKELSQGYRLTTNNRMELMAVIVALEALKR 60
Query: 66 PC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+V ++TDS YV + GW + K KN DLW +F+ A +H+V W
Sbjct: 61 DGLQVKIFTDSQYVVNSVEKGWL----WGWVKTGFKDKKNKDLWQRFIPAFKKHQVKFNW 116
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGH+ N N + D +A AA S
Sbjct: 117 VKGHSTNPLNNRCDELATQAADS 139
>gi|197303005|ref|ZP_03168053.1| hypothetical protein RUMLAC_01731 [Ruminococcus lactaris ATCC
29176]
gi|197297860|gb|EDY32412.1| hypothetical protein RUMLAC_01731 [Ruminococcus lactaris ATCC
29176]
Length = 158
Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G +L Y + K +S G +TTNNRMELMA I L A
Sbjct: 3 VKVYTDGAARGNPDGPGGYGAVLEYVDGKGQLHTKELSQGYTKTTNNRMELMAVIAGLEA 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L PC V +Y+DS YV F+Q + VKN+DLW + +E ++H+V
Sbjct: 63 LNLPCTVEVYSDSQYVVNAFNQHWVDGWIKKSWKRGKNEPVKNVDLWKRLLEVKSRHQVT 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH G+ +NE+ D++A AA
Sbjct: 123 FHWVKGHDGHPQNERCDQLATTAAD 147
>gi|57238647|ref|YP_179778.1| ribonuclease H [Campylobacter jejuni RM1221]
gi|86149336|ref|ZP_01067567.1| RNase H [Campylobacter jejuni subsp. jejuni CF93-6]
gi|86153033|ref|ZP_01071238.1| RNase H [Campylobacter jejuni subsp. jejuni HB93-13]
gi|88596527|ref|ZP_01099764.1| RNase H [Campylobacter jejuni subsp. jejuni 84-25]
gi|121612242|ref|YP_001001279.1| ribonuclease H [Campylobacter jejuni subsp. jejuni 81-176]
gi|148925777|ref|ZP_01809465.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni CG8486]
gi|157415856|ref|YP_001483112.1| ribonuclease H [Campylobacter jejuni subsp. jejuni 81116]
gi|218563225|ref|YP_002345005.1| ribonuclease H [Campylobacter jejuni subsp. jejuni NCTC 11168]
gi|283957022|ref|ZP_06374494.1| LOW QUALITY PROTEIN: ribonuclease HI [Campylobacter jejuni subsp.
jejuni 1336]
gi|22096084|sp|Q9PM39|RNH_CAMJE RecName: Full=Ribonuclease HI; Short=RNase HI
gi|73621840|sp|Q5HSF7|RNH_CAMJR RecName: Full=Ribonuclease H; Short=RNase H
gi|187611357|sp|A8FNU8|RNH_CAMJ8 RecName: Full=Ribonuclease H; Short=RNase H
gi|187611358|sp|A1W1N8|RNH_CAMJJ RecName: Full=Ribonuclease H; Short=RNase H
gi|57167451|gb|AAW36230.1| RNase H [Campylobacter jejuni RM1221]
gi|85840118|gb|EAQ57376.1| RNase H [Campylobacter jejuni subsp. jejuni CF93-6]
gi|85843918|gb|EAQ61128.1| RNase H [Campylobacter jejuni subsp. jejuni HB93-13]
gi|87249899|gb|EAQ72858.1| RNase H [Campylobacter jejuni subsp. jejuni 81-176]
gi|88191368|gb|EAQ95340.1| RNase H [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360932|emb|CAL35733.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni NCTC 11168]
gi|145845787|gb|EDK22878.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni CG8486]
gi|157386820|gb|ABV53135.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni 81116]
gi|283791523|gb|EFC30320.1| LOW QUALITY PROTEIN: ribonuclease HI [Campylobacter jejuni subsp.
jejuni 1336]
gi|284926830|gb|ADC29182.1| ribonuclease H [Campylobacter jejuni subsp. jejuni IA3902]
gi|307748492|gb|ADN91762.1| Ribonuclease H [Campylobacter jejuni subsp. jejuni M1]
gi|315059086|gb|ADT73415.1| Ribonuclease HI [Campylobacter jejuni subsp. jejuni S3]
gi|315928871|gb|EFV08133.1| Ribonuclease H [Campylobacter jejuni subsp. jejuni 305]
gi|315931681|gb|EFV10642.1| ribonuclease H [Campylobacter jejuni subsp. jejuni 327]
Length = 146
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +LRYK +K G E TTNNRMELMA I++L ALK
Sbjct: 1 MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNNRMELMAIIESLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS+ + + ++W++ W D K KNIDLW ++++ + HK+ +W+
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEGWI-----KKDFKGKKNIDLWKEYIKVAKSHKIKAFWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ ENE+ D +AR AA+ +
Sbjct: 116 KAHNGHLENERCDTLAREAALKIARE 141
>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
Length = 432
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 90/152 (59%), Gaps = 6/152 (3%)
Query: 6 LREVHA-YTDGACSGNPG----PGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKA 59
+ +++ YTDGAC GN GGWGV L Y G E+ + GGE +TTNNRMELMAAI A
Sbjct: 1 MSQLNIAYTDGACKGNGKQGVSAGGWGVYLHYFNGDERHLWGGEPDTTNNRMELMAAITA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L A + L+TDS YV G +QWI W+ GWK +D K V N DLW + + +
Sbjct: 61 LEATPAQIPLQLWTDSGYVKDGITQWIGGWKLRGWKKADGKPVLNQDLWQRLDQLTQNRI 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+D WIKGHAG+ NE D++A F ++
Sbjct: 121 IDWQWIKGHAGHAGNEMADQLANKGVDGFGDE 152
>gi|157803406|ref|YP_001491955.1| ribonuclease H [Rickettsia canadensis str. McKiel]
gi|189043707|sp|A8EXT7|RNH_RICCK RecName: Full=Ribonuclease H; Short=RNase H
gi|157784669|gb|ABV73170.1| ribonuclease H [Rickettsia canadensis str. McKiel]
Length = 155
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ +++ +V YTDGAC+GNPGPGGWG LL++ K I G E +TTNNRME+ AA++AL
Sbjct: 1 MN-ENISKVVIYTDGACAGNPGPGGWGALLQFNDTSKEILGYELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K ++H +
Sbjct: 60 RILKKSCNVEIYTDSKYLQQGITTWIHNWVKNNWCKSNNEAVKNADLWQKLYAELSKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAAQG 143
>gi|269959134|ref|YP_003328923.1| ribonuclease H [Anaplasma centrale str. Israel]
gi|269848965|gb|ACZ49609.1| ribonuclease H [Anaplasma centrale str. Israel]
Length = 171
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG-KEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGACSGNPGPGGWG +LR+ +E+ ISGG +TTNNRMEL A I AL AL P
Sbjct: 25 RVAIYTDGACSGNPGPGGWGAVLRFGDGEERRISGGSDDTTNNRMELTAVIMALAALSGP 84
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS+YV G ++WI+KW+ NGW+TS K VKN+DLWM+ + H ++ W+K
Sbjct: 85 CSVCVNTDSTYVKNGITEWIRKWKLNGWRTSSKSAVKNVDLWMELERLTLLHSIEWRWVK 144
Query: 127 GHAGNQENEKVDRIARNAAV 146
HAG++ NEK D +AR A
Sbjct: 145 AHAGDEYNEKADMLARGEAE 164
>gi|325971303|ref|YP_004247494.1| ribonuclease H [Spirochaeta sp. Buddy]
gi|324026541|gb|ADY13300.1| Ribonuclease H [Spirochaeta sp. Buddy]
Length = 149
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
RE+ YTDG C GNPGPGGW +L+ EK SG E++TTNNRMEL A I+AL A +
Sbjct: 4 REIVIYTDGGCLGNPGPGGWAYVLKADGIFEKEASGNERDTTNNRMELTAVIEALKASQA 63
Query: 66 --PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L TDS YV G + WIKKW+ NGW+T+ K+ VKN + W++ +A V
Sbjct: 64 LGAQSISLNTDSQYVKNGITSWIKKWKVNGWRTAAKEPVKNKEYWVELDRLNANLPVQWN 123
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+KGHAG + NE+ D++ R A +
Sbjct: 124 WVKGHAGVEGNERCDQLVRMAMDAL 148
>gi|239947173|ref|ZP_04698926.1| ribonuclease HI [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921449|gb|EER21473.1| ribonuclease HI [Rickettsia endosymbiont of Ixodes scapularis]
Length = 155
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/144 (48%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGAC+GNPGPGGWG LL++ K I G E +TTNNRME+ AA++AL
Sbjct: 4 MDSK----VVIYTDGACAGNPGPGGWGALLQFNDTSKEIFGHELDTTNNRMEITAALEAL 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK C V +YTDS Y+ +G + WI W +N W S+ + VKN DLW K +H +
Sbjct: 60 RILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELNKHTI 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 120 IWKWVKGHANNSGNIAADKLAMQG 143
>gi|51473897|ref|YP_067654.1| ribonuclease H [Rickettsia typhi str. Wilmington]
gi|81826285|sp|Q68W20|RNH_RICTY RecName: Full=Ribonuclease H; Short=RNase H
gi|51460209|gb|AAU04172.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
Length = 152
Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
MDSK V YTDGACSGNPGPGGWG LL++ K I G E TTNNRME+ AA++AL
Sbjct: 1 MDSK----VVIYTDGACSGNPGPGGWGALLKFNDASKKIFGYELVTTNNRMEMTAALEAL 56
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK V +YTDS Y+ G + WI W +N W ++ + VKN+DLW K ++H +
Sbjct: 57 RVLKKSSIVEIYTDSKYLQHGITVWIHNWMKNNWCKNNNEPVKNVDLWQKLYSELSKHTI 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
W+KGHA N N D++A
Sbjct: 117 MWRWVKGHASNSGNIAADKLAVQG 140
>gi|118471204|ref|YP_889796.1| ribonuclease H [Mycobacterium smegmatis str. MC2 155]
gi|1350806|sp|Q07705|RNH_MYCSM RecName: Full=Ribonuclease H; Short=RNase H
gi|189043700|sp|A0R3Q8|RNH_MYCS2 RecName: Full=Ribonuclease H; Short=RNase H
gi|643652|gb|AAA62124.1| ribonuclease HI [Mycobacterium smegmatis]
gi|118172491|gb|ABK73387.1| RNase H [Mycobacterium smegmatis str. MC2 155]
Length = 159
Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYPC 67
V +TDG C NPGPGGWG +LR++ + + GGE T+NNRMEL A I AL AL P
Sbjct: 6 VIIHTDGGCRPNPGPGGWGAVLRHREHVREMFGGEAAVTSNNRMELTAPIMALEALTRPV 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS+YV G ++W+ W++NGW T+ K+ VKN+DLW + A A+H+V+ +W+KG
Sbjct: 66 TVHLYTDSTYVRNGITKWVLGWERNGWMTAAKQPVKNVDLWQRLQAACARHQVEWFWVKG 125
Query: 128 HAGNQENEKVDRIARNA 144
H+G +NE D +A
Sbjct: 126 HSGIGDNELADELATRG 142
>gi|257790848|ref|YP_003181454.1| ribonuclease H [Eggerthella lenta DSM 2243]
gi|317488441|ref|ZP_07946994.1| RNase H [Eggerthella sp. 1_3_56FAA]
gi|325831890|ref|ZP_08164987.1| ribonuclease HI [Eggerthella sp. HGA1]
gi|257474745|gb|ACV55065.1| ribonuclease H [Eggerthella lenta DSM 2243]
gi|316912485|gb|EFV34041.1| RNase H [Eggerthella sp. 1_3_56FAA]
gi|325486211|gb|EGC88663.1| ribonuclease HI [Eggerthella sp. HGA1]
Length = 158
Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 83/145 (57%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNPGPGG+G +LR+ EK +S G + TTNNRMELMA + L
Sbjct: 2 HVDIYTDGAARGNPGPGGYGTVLRFVDSKGAVHEKELSQGYERTTNNRMELMAVVAGLEV 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKVD 121
LK PC + LY+DS YV F+Q + +K VKN DLW + + A H V
Sbjct: 62 LKRPCSITLYSDSQYVVNAFNQHWVDGWLKRGWKNAQKQPVKNDDLWKRLLAAKEPHDVT 121
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG+ ENE+ D +A AA
Sbjct: 122 FVWVKGHAGHPENERCDELATTAAD 146
>gi|207092392|ref|ZP_03240179.1| ribonuclease H [Helicobacter pylori HPKX_438_AG0C1]
Length = 143
Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPG GG+ +LRYK KEKIISGGE+ TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGSGGYAAILRYKDKEKIISGGEEFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +FV+ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLANWQ-----KKNFVKVKNVDLWKEFVKVSKGHSIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH G+ ENE+ D +A+ A
Sbjct: 116 KGHNGHAENERCDSLAKLEAQKRIK 140
>gi|312889322|ref|ZP_07748876.1| RNase HI [Mucilaginibacter paludis DSM 18603]
gi|311298199|gb|EFQ75314.1| RNase HI [Mucilaginibacter paludis DSM 18603]
Length = 170
Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LKYPC 67
+ +TDGA SGNPGPGG+G +LR K +SGG ++TTNNRMEL+A IK L A K
Sbjct: 17 IEIFTDGASSGNPGPGGYGTILRSGAHYKELSGGYRKTTNNRMELLAVIKGLEALTKPNQ 76
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +++DS YV + GW K KN DLW++ +E H++ W++G
Sbjct: 77 TVTIFSDSKYVIDPIEKKWL----YGWVQKGFKDKKNKDLWLRLLELIKVHQIKFVWVRG 132
Query: 128 HAGNQENEKVDRIARNAAVS 147
H G+ ENE+ DR+A A+
Sbjct: 133 HNGHPENERCDRLAVAASKQ 152
>gi|317151906|ref|YP_004119954.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
gi|316942157|gb|ADU61208.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
Length = 160
Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 8/146 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYK-------GKEKIISGGEKETTNNRMELMAAIKAL 60
V YTDG+C GNPGPGG+G +L + K S G ++TTNNRMEL A I +L
Sbjct: 4 RVTIYTDGSCLGNPGPGGYGAVLIHGEYKGMNADNYKEFSQGYRDTTNNRMELRAVIVSL 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+AL C V L+TDS YV + ++ WQ+NGWKT+ KK VKN DLW + + +H
Sbjct: 64 SALTRACAVDLWTDSKYVQEAITKNWIGNWQRNGWKTAAKKPVKNQDLWQQLIPLIKEHD 123
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V +W+KGH+G+ NE+ D +AR AA
Sbjct: 124 VTFHWVKGHSGHMLNERCDILARTAA 149
>gi|253699464|ref|YP_003020653.1| 5'-3' exonuclease [Geobacter sp. M21]
gi|251774314|gb|ACT16895.1| 5'-3' exonuclease [Geobacter sp. M21]
Length = 474
Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
V Y+DG+ + GPGG+GV+LRY EK +SG E +T+ RMEL+AAI+ L
Sbjct: 285 TPPPPGVVEIYSDGSGR-DSGPGGYGVILRYGEHEKELSGFEPSSTSQRMELIAAIRGLE 343
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL P +V +++DS Y+ +G S+W+K W + G +KN DLW + + SA+HKV
Sbjct: 344 ALNAPSRVRVFSDSQYLVRGMSEWLKGWIRAGRLD-TPDALKNQDLWRQLADLSAKHKVQ 402
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W+ GHAG+ NE+ D++A+ AA
Sbjct: 403 WEWVAGHAGHPFNERCDKLAKRAAEE 428
>gi|160939117|ref|ZP_02086468.1| hypothetical protein CLOBOL_04011 [Clostridium bolteae ATCC
BAA-613]
gi|158438080|gb|EDP15840.1| hypothetical protein CLOBOL_04011 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ +V YTDG+ GNP GPGG+G +L + EK +SGG TTNNRMELMAAI
Sbjct: 1 MTKVQIYTDGSARGNPDGPGGYGTVLHFTDSSGQLHEKTMSGGYVRTTNNRMELMAAIVG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC+V LY+DS Y+ F+Q VKNIDLW + ++A H
Sbjct: 61 LEALNRPCQVELYSDSKYLTDAFNQHWIDSWVAKGWNRGKSGPVKNIDLWKRLLKAKEPH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGHAG+ ENEK D +A +AA
Sbjct: 121 QVKFIWVKGHAGHPENEKCDALATSAAD 148
>gi|197117169|ref|YP_002137596.1| ribonuclease H [Geobacter bemidjiensis Bem]
gi|197086529|gb|ACH37800.1| ribonuclease H [Geobacter bemidjiensis Bem]
Length = 474
Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
V Y+DG+ + GPGG+GV+LRY EK +SG E +T+ RMEL+AAI+ L
Sbjct: 285 TPPPPGIVEIYSDGSGR-DSGPGGYGVILRYGEHEKELSGFEPSSTSQRMELIAAIRGLE 343
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
AL P +V +++DS Y+ +G S+W+ W + G +KN DLW + + SA+HKV+
Sbjct: 344 ALNAPSRVRVFSDSQYLVRGMSEWLAGWIRAGRL-ETPDALKNQDLWRQLADLSARHKVE 402
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W+ GHAG+ NE+ D++A+ AA
Sbjct: 403 WEWVAGHAGHPFNERCDKLAKRAAEE 428
>gi|309388979|gb|ADO76859.1| Ribonuclease H [Halanaerobium praevalens DSM 2228]
Length = 279
Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALTALK 64
+E YTDGAC GNPGPGG+ + + +SG KE+TNNRMEL A I+AL +
Sbjct: 136 QEFKLYTDGACLGNPGPGGYAAFILNNNLEELTSVSGSTKESTNNRMELKAVIEALKVIP 195
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KV +Y+DSSYV G S+WIK W++NGWKT+ KK V N DLW K E S +
Sbjct: 196 QKTKVEIYSDSSYVLNGLSKWIKAWKKNGWKTASKKEVANQDLWKKLDELSTNFDLVYKK 255
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+KGH+G+Q NEK D++A+ A
Sbjct: 256 VKGHSGDQYNEKADKLAKKEAEKI 279
>gi|139437327|ref|ZP_01771487.1| Hypothetical protein COLAER_00466 [Collinsella aerofaciens ATCC
25986]
gi|133776974|gb|EBA40794.1| Hypothetical protein COLAER_00466 [Collinsella aerofaciens ATCC
25986]
Length = 178
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK-----EKIISGGEKETTNNRMELMAAIKALTA 62
+V YTDG+ NPG GG+G +L+Y +S G +TTNNRMELMA I AL A
Sbjct: 19 KVIIYTDGSARSNPGRGGYGAVLKYTNPAGKTFTSELSRGYAKTTNNRMELMAVIVALEA 78
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L PC V +++DS YV F++ W++ GWKT++K+ VKN DLW + + A ++HKV+
Sbjct: 79 LNRPCDVEVHSDSQYVVNAFNKHWIDGWKKRGWKTANKQPVKNRDLWERLLAAKSKHKVE 138
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG++ NE+ D +A AA
Sbjct: 139 FIWVKGHAGHELNERCDELATTAAD 163
>gi|86152250|ref|ZP_01070461.1| RNase H [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125040|ref|YP_004067044.1| RNase H [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840739|gb|EAQ57990.1| RNase H [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018762|gb|ADT66855.1| RNase H [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 146
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +LRYK +K G E TTNNRMELMA I++L ALK
Sbjct: 1 MKHIEIYTDGSCLDNPGFGGWAYILRYKEYQKEGFGAEANTTNNRMELMAIIESLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS+ + + ++W++ W D K KNIDLW ++++ + HK+ +W+
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEGWI-----KKDFKGKKNIDLWKEYIKVAKSHKIKAFWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ ENE+ D +AR AA+ +
Sbjct: 116 KAHNGHLENERCDTLAREAALKIARE 141
>gi|303326164|ref|ZP_07356607.1| ribonuclease HI [Desulfovibrio sp. 3_1_syn3]
gi|302864080|gb|EFL87011.1| ribonuclease HI [Desulfovibrio sp. 3_1_syn3]
Length = 159
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/143 (46%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVL--LRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+++V +TDG+C GNPGPGGW + L K ++GG + TTNNRME+ ++AL AL
Sbjct: 1 MKQVVIHTDGSCLGNPGPGGWAAVLCLEGTDHRKELAGGFRLTTNNRMEITGVLEALAAL 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ PC V LYTDS YV + + WQ+ W +DKK VKN+DLW K + +H V L
Sbjct: 61 REPCAVELYTDSQYVRNAVEKGWLRSWQKKNWVKADKKPVKNVDLWQKLLPELGRHTVRL 120
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
+W++GHAG+ ENE+ D +AR A
Sbjct: 121 HWLRGHAGHAENERCDVLARAYA 143
>gi|212703932|ref|ZP_03312060.1| hypothetical protein DESPIG_01985 [Desulfovibrio piger ATCC 29098]
gi|212672635|gb|EEB33118.1| hypothetical protein DESPIG_01985 [Desulfovibrio piger ATCC 29098]
Length = 159
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVL--LRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+++V YTDG+C GNPG GGW + L + + GG + TTNNRMEL I AL+AL
Sbjct: 1 MKKVIIYTDGSCLGNPGRGGWAAILCLVGSTARRELVGGARLTTNNRMELGGVIAALSAL 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ C+V +YTDS YV + WQ+ W SDKK V N+DLW + + HKV
Sbjct: 61 REACEVDIYTDSKYVCDAVEKGWLAGWQKRNWIKSDKKPVLNVDLWKQLLPLLRTHKVTF 120
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
+W++GHAG++ENE+ D +AR A
Sbjct: 121 HWLRGHAGHRENERCDELARAFA 143
>gi|57168804|ref|ZP_00367935.1| RNase H [Campylobacter coli RM2228]
gi|305432453|ref|ZP_07401615.1| ribonuclease HI [Campylobacter coli JV20]
gi|57019851|gb|EAL56534.1| RNase H [Campylobacter coli RM2228]
gi|304444492|gb|EFM37143.1| ribonuclease HI [Campylobacter coli JV20]
Length = 146
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + YTDG+C NPG GGW +LRY +K G E TTNNRMEL A I+AL ALK
Sbjct: 1 MRHIEIYTDGSCLKNPGFGGWAYILRYNQHQKEGFGAEANTTNNRMELKAIIEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS+ + + ++W++ W D K KN+DLW ++++ + HK+ YWI
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEAWI-----KKDFKGKKNVDLWKEYIDVAKPHKIKAYWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ ENE+ D +AR AA+ +
Sbjct: 116 KAHNGHLENERCDTLAREAALKIARE 141
>gi|82701057|ref|YP_418157.1| putative Ribonuclease HI [Pseudomonas phage EL]
gi|82657962|emb|CAG27218.1| putative Ribonuclease HI [Pseudomonas phage EL]
Length = 163
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
K YTDG+ GNPGPGG+GV +YKG+E +S G +TTNNR ELM+ I AL
Sbjct: 5 KRNDRYVIYTDGSALGNPGPGGYGVYAKYKGEEFSLSKGYYKTTNNRQELMSVIAALEEF 64
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDL 122
KV ++TDS YV K ++W++ W +N W + + VKN DL E ++KV
Sbjct: 65 GPNIKVDIFTDSQYVIKCATKWMRGWIRNNWMGYNSGQPVKNRDLLEVLNELLKKNKVKF 124
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
+W+KGH+G++ NEK D++A++AA +
Sbjct: 125 HWVKGHSGDEGNEKADQLAKDAANN 149
>gi|88607880|ref|YP_504737.1| ribonuclease H1 [Anaplasma phagocytophilum HZ]
gi|88598943|gb|ABD44413.1| ribonuclease H1 [Anaplasma phagocytophilum HZ]
Length = 150
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKA 59
MDS +V YTDGACSGNPGPGGWG + + G+E+ ISGG +TTNNRMEL A I+A
Sbjct: 1 MDSG---QVVIYTDGACSGNPGPGGWGAVFLFSGGEERRISGGCSDTTNNRMELSAVIEA 57
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L AL C V + TDS YV G + WI KW+ NGW+T+ K VKN+DLWM+ + +H
Sbjct: 58 LGALDRQCNVCVRTDSVYVKNGITTWIHKWKSNGWQTASKSAVKNVDLWMQLEALTLKHN 117
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V W+K HAGN+ N + D +AR
Sbjct: 118 VTWEWVKAHAGNRYNVEADALARAEVE 144
>gi|313904046|ref|ZP_07837426.1| Ribonuclease H [Eubacterium cellulosolvens 6]
gi|313471195|gb|EFR66517.1| Ribonuclease H [Eubacterium cellulosolvens 6]
Length = 157
Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDG+ GNP GPGG+G +LRY + E+ +S G K+TTNNRME+MAAI +L
Sbjct: 2 KVEIYTDGSARGNPDGPGGYGAVLRYIDPKGQLHERELSQGYKKTTNNRMEMMAAIASLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
L+ PC+V L++DS Y+ K F+ + VKN+DLW + ++A HKV
Sbjct: 62 LLRRPCEVDLHSDSQYLVKAFNDHWIDSWIRKGWKRGKNEPVKNVDLWQRLLKAMEPHKV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ W+KGH GN+ NE+ D++A +AA
Sbjct: 122 NYIWVKGHVGNELNERCDQLATSAAD 147
>gi|224418413|ref|ZP_03656419.1| ribonuclease H [Helicobacter canadensis MIT 98-5491]
gi|253827731|ref|ZP_04870616.1| ribonuclease H [Helicobacter canadensis MIT 98-5491]
gi|313141943|ref|ZP_07804136.1| ribonuclease H [Helicobacter canadensis MIT 98-5491]
gi|253511137|gb|EES89796.1| ribonuclease H [Helicobacter canadensis MIT 98-5491]
gi|313130974|gb|EFR48591.1| ribonuclease H [Helicobacter canadensis MIT 98-5491]
Length = 143
Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V + DG+ GNPG GGW +LRY+ KEKI+ G K TNN+MEL A I +L ALK
Sbjct: 1 MKRVTLFCDGSSLGNPGYGGWCGILRYQDKEKILKGSAKNVTNNQMELSALIFSLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++L+ +DS YV G S+W+ W D K +KN +LW +++E S HK+++ W+
Sbjct: 61 PCEILVISDSKYVLDGLSKWLPNWII-----KDFKNIKNPELWKQYLEVSKNHKIEVKWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH G++ENE D+IA+ A+ KN+
Sbjct: 116 KGHNGHKENELCDKIAKEEALKLKNQ 141
>gi|312143951|ref|YP_003995397.1| alkylhydroperoxidase like protein, AhpD family [Halanaerobium sp.
'sapolanicus']
gi|311904602|gb|ADQ15043.1| alkylhydroperoxidase like protein, AhpD family [Halanaerobium sp.
'sapolanicus']
Length = 274
Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats.
Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 2/143 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++ YTDGACSGNPGPGG+ L+ + + ISG E++TTNNRMEL A I+ L +
Sbjct: 131 KKYQLYTDGACSGNPGPGGYAALILENDNQELEEISGSEEDTTNNRMELKAVIEGLKRVP 190
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V L++DS+YV KG S+WIK W+ NGWKT+ KK V N DLW + + +K++
Sbjct: 191 KGSSVELFSDSTYVLKGLSKWIKTWKSNGWKTASKKNVANKDLWQHLDKLISDYKLEFQK 250
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGH+G++ NEKVD +A+
Sbjct: 251 VKGHSGDEYNEKVDSLAKKEIKK 273
>gi|327403068|ref|YP_004343906.1| RNase HI [Fluviicola taffensis DSM 16823]
gi|327318576|gb|AEA43068.1| RNase HI [Fluviicola taffensis DSM 16823]
Length = 157
Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+ YTDG+ GNPGPGG+GV+L+YK K +S G + TTNNRMEL+A I AL +LK
Sbjct: 5 IEIYTDGSSRGNPGPGGYGVILKYKSSLKELSQGFRLTTNNRMELIAVIIALESLKTTSI 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +Y+DS YV + Q+ K DLWM++++ Q +++ W++G
Sbjct: 65 PIKVYSDSKYVIDSIQKRWVNSWQSKGFAKKKNK----DLWMRYLKIEKQFQIEFIWVRG 120
Query: 128 HAGNQENEKVDRIARNAAV 146
H G+ ENE+ D +A AA+
Sbjct: 121 HNGHPENERCDILAVEAAL 139
>gi|87307715|ref|ZP_01089858.1| ribonuclease H [Blastopirellula marina DSM 3645]
gi|87289329|gb|EAQ81220.1| ribonuclease H [Blastopirellula marina DSM 3645]
Length = 152
Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 97/147 (65%), Gaps = 5/147 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALTALKY 65
EV +TDGACSGNPGPGGW +LR+ G KE SGGE+ +TNNRMEL A I+ L L
Sbjct: 6 EVSLFTDGACSGNPGPGGWAFILRHHGTGKELEGSGGEEVSTNNRMELQAVIEGLGTLNR 65
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK---TVKNIDLWMKFVEASAQHKVDL 122
PC+V L+TDS YV KG S+W+ KW+QNGW+ + K VKN +LW K E +H+V
Sbjct: 66 PCRVELFTDSVYVGKGMSEWMPKWKQNGWRRKEGKAWKPVKNEELWRKLDELLLKHQVKY 125
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
+ GH+G+ ENE+ D +A A FK
Sbjct: 126 TRVAGHSGHPENERCDELAVEACQKFK 152
>gi|332297400|ref|YP_004439322.1| Ribonuclease H [Treponema brennaborense DSM 12168]
gi|332180503|gb|AEE16191.1| Ribonuclease H [Treponema brennaborense DSM 12168]
Length = 533
Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA-----LTA 62
E+ YTDG CSGNPGPGGWG ++ G + SGGE TTNNRMEL AAI A
Sbjct: 386 EIIVYTDGGCSGNPGPGGWGCVILADGTQYTASGGEPVTTNNRMELSAAIAALSAIDQNE 445
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ ++ DS YV G + WI+ W++NGW+ S+K+ VKN DLW + + V
Sbjct: 446 SWKQRPIRVHIDSQYVKNGITSWIRSWKKNGWRNSEKQPVKNRDLWELLDALNGRLSVSW 505
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGHAG NE D +A +
Sbjct: 506 NWVKGHAGVTYNELCDELATKEVKKYSK 533
>gi|221195681|ref|ZP_03568735.1| ribonuclease HI [Atopobium rimae ATCC 49626]
gi|221184447|gb|EEE16840.1| ribonuclease HI [Atopobium rimae ATCC 49626]
Length = 177
Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 90/145 (62%), Gaps = 6/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V AYTDGA GNPGPGG+G +L Y K + S G + TTNNRMEL+ I AL A
Sbjct: 20 QVVAYTDGASRGNPGPGGYGAVLVYVDASGKRHTREFSQGYRLTTNNRMELLGVIVALEA 79
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNG-WKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L PC V +++DS YV F+Q WKTS+K+ VKNIDLW + + AS+ H+V
Sbjct: 80 LTQPCVVEVHSDSKYVVDAFNQGWIFGWMRRGWKTSNKQNVKNIDLWKRLLVASSSHEVH 139
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG + NE+ D +A AA
Sbjct: 140 YVWVKGHAGEELNERCDELATTAAD 164
>gi|303232773|ref|ZP_07319458.1| ribonuclease HI [Atopobium vaginae PB189-T1-4]
gi|302481259|gb|EFL44334.1| ribonuclease HI [Atopobium vaginae PB189-T1-4]
Length = 207
Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTA 62
V +TDG+ GNPGPGG+G +L + + + G + TTNNRME++A I+AL
Sbjct: 36 RVTIWTDGSSRGNPGPGGFGAVLYFTDVRGELHTRELHDGYRLTTNNRMEMLAVIRALET 95
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
LK C V +++DSSYV +Q + Q S KK VKNIDLW + +EAS +H +
Sbjct: 96 LKCACVVDIHSDSSYVVNAHNQHWIEGWQRKGWKSATKKPVKNIDLWKRLIEASQRHTIR 155
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+W+KGHAG NE+ D +A AA + +
Sbjct: 156 YHWVKGHAGIAGNERCDELATQAADAPRE 184
>gi|56416452|ref|YP_153526.1| ribonuclease H [Anaplasma marginale str. St. Maries]
gi|222474821|ref|YP_002563236.1| ribonuclease H (rnhA) [Anaplasma marginale str. Florida]
gi|255002793|ref|ZP_05277757.1| ribonuclease H (rnhA) [Anaplasma marginale str. Puerto Rico]
gi|255003927|ref|ZP_05278728.1| ribonuclease H (rnhA) [Anaplasma marginale str. Virginia]
gi|56387684|gb|AAV86271.1| ribonuclease H [Anaplasma marginale str. St. Maries]
gi|222418957|gb|ACM48980.1| ribonuclease H (rnhA) [Anaplasma marginale str. Florida]
Length = 171
Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats.
Identities = 75/136 (55%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGACSGNPGPGGWG +LR+ E+ ISGG +TTNNRMEL A I AL AL P
Sbjct: 25 RVAIYTDGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMALAALSGP 84
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V + TDS+YV G ++WI+KW+ NGW+TS+K VKN+DLW++ + H ++ W+K
Sbjct: 85 CSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVELERLTLLHSIEWRWVK 144
Query: 127 GHAGNQENEKVDRIAR 142
HAGN+ NE+ D +AR
Sbjct: 145 AHAGNEYNEEADMLAR 160
>gi|153816149|ref|ZP_01968817.1| hypothetical protein RUMTOR_02397 [Ruminococcus torques ATCC 27756]
gi|317500469|ref|ZP_07958693.1| ribonuclease HI [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089430|ref|ZP_08338329.1| ribonuclease H [Lachnospiraceae bacterium 3_1_46FAA]
gi|145846484|gb|EDK23402.1| hypothetical protein RUMTOR_02397 [Ruminococcus torques ATCC 27756]
gi|316898224|gb|EFV20271.1| ribonuclease HI [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404798|gb|EGG84336.1| ribonuclease H [Lachnospiraceae bacterium 3_1_46FAA]
Length = 159
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L Y K +S G TTNNRMELMA I L
Sbjct: 2 QVKIYTDGAARGNPDGPGGYGAILEYVDTKGTLHTKELSRGYVRTTNNRMELMAVIAGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC+V +Y+DS YV F++ + VKN DLW + ++A +HKV
Sbjct: 62 ALNRPCEVEVYSDSQYVVNAFNKQWVDGWIKKGWKRGKNEPVKNPDLWKRLLKAKEKHKV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH G+ +NE+ D +A +AA
Sbjct: 122 SFHWVKGHDGHPQNERCDLLATSAAD 147
>gi|126437295|ref|YP_001072986.1| ribonuclease H [Mycobacterium sp. JLS]
gi|126237095|gb|ABO00496.1| ribonuclease H [Mycobacterium sp. JLS]
Length = 154
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 97/145 (66%), Gaps = 4/145 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKA 59
MD++ V +TDG C NPGPGGWG +LR++ + + GGE T+NNRMEL A I A
Sbjct: 1 MDTEP---VIIHTDGGCRPNPGPGGWGAVLRHRNHIREMCGGEPGATSNNRMELTAPIMA 57
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L AL P V L+TDS+YV G ++W+ W++NGW T+ K+ VKN+DLW + A A+H+
Sbjct: 58 LEALTRPVLVHLHTDSTYVRNGITKWVLGWERNGWLTAAKQPVKNVDLWQRLQAACARHR 117
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V+ +W+KGH+G +NE D++A
Sbjct: 118 VEWFWVKGHSGVADNELADQLATRG 142
>gi|311743724|ref|ZP_07717530.1| ribonuclease HI [Aeromicrobium marinum DSM 15272]
gi|311312854|gb|EFQ82765.1| ribonuclease HI [Aeromicrobium marinum DSM 15272]
Length = 152
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKA 59
M + V +TDG C+ NPGPGGWG +LR + + GGE TTNNRMEL A I A
Sbjct: 1 MTQEP---VIIHTDGGCTPNPGPGGWGAVLRQGSHVRELYGGEPGITTNNRMELTAPIMA 57
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L AL P V L+TDS+YV G +QW+ W++NGW+TS K+ VKN+DLW + A QH+
Sbjct: 58 LEALTRPVLVHLHTDSTYVRGGITQWMAGWERNGWRTSAKQPVKNVDLWKRLKAACEQHE 117
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V+ +W+KGH+G +NE D++A
Sbjct: 118 VEWFWVKGHSGVPDNELADQLATRGM 143
>gi|153951083|ref|YP_001398913.1| ribonuclease H [Campylobacter jejuni subsp. doylei 269.97]
gi|152938529|gb|ABS43270.1| RNase H [Campylobacter jejuni subsp. doylei 269.97]
Length = 146
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +LRYK +K G E TTNNRMELMA I++L LK
Sbjct: 1 MKHIEIYTDGSCLNNPGFGGWSYILRYKEYQKEGFGAEANTTNNRMELMAIIESLKVLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS+ + + ++W++ W D K KNIDLW ++++ + HK+ +W+
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEGWI-----KKDFKGKKNIDLWKEYIKVAKSHKIKAFWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ ENE+ D +AR AA+ +
Sbjct: 116 KAHNGHLENERCDTLAREAALKIARE 141
>gi|281356112|ref|ZP_06242605.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
gi|281317481|gb|EFB01502.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
Length = 154
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V YTDGAC GNPGPGG+G +L YK + +SGG + TTNNRME+ AAI A+ L
Sbjct: 1 MKSVQIYTDGACKGNPGPGGYGAVLLYKTYRRELSGGFRHTTNNRMEIFAAIAAVELLNE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC++ LY+DSSY+ ++ W+++GW D + V NIDLW +F+ A HK+ + W
Sbjct: 61 PCEITLYSDSSYLVNAVTKRWLYNWKRSGWVKRDGQPVNNIDLWKRFLAAVEPHKLHMVW 120
Query: 125 IKGHAGNQENEKVD 138
+KGHA N EN + D
Sbjct: 121 VKGHADNVENSRCD 134
>gi|32476346|ref|NP_869340.1| ribonuclease H [Rhodopirellula baltica SH 1]
gi|77416568|sp|Q7UF86|RNH_RHOBA RecName: Full=Ribonuclease H; Short=RNase H
gi|32446891|emb|CAD78797.1| ribonuclease H [Rhodopirellula baltica SH 1]
gi|327541127|gb|EGF27673.1| ribonuclease H [Rhodopirellula baltica WH47]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALTALK 64
+ V YTDGACSGNPGPGGW +LR KE SGG+ TTNN+MELMA I+ L ALK
Sbjct: 11 KPVELYTDGACSGNPGPGGWAFVLRCPRTLKEIQRSGGQPHTTNNQMELMAVIRGLEALK 70
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK---TVKNIDLWMKFVEASAQHKVD 121
PC V LY+DS YV +G S W+ W+ GWK D VKN++LW + + H+V
Sbjct: 71 EPCAVDLYSDSKYVGQGMSSWMAGWKSRGWKRKDGSKLVPVKNVELWQELDQQMQAHRVT 130
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ +KGHAG+ ENE D++A A +
Sbjct: 131 YHHVKGHAGHTENELCDKLAVAAYQQY 157
>gi|32266197|ref|NP_860229.1| ribonuclease H [Helicobacter hepaticus ATCC 51449]
gi|32262247|gb|AAP77295.1| ribonuclease HI [Helicobacter hepaticus ATCC 51449]
Length = 148
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 95/146 (65%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V Y DG+ GNPG GGW +L + K+KI++GGE TTNNRMEL+A I++L AL
Sbjct: 3 MKQVTLYCDGSALGNPGAGGWCGILSFGDKQKILTGGETYTTNNRMELLAVIESLKALNQ 62
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V +Y+DS YV G + W+K W K VKN DLW +++ S+ H+V +W+
Sbjct: 63 PCIVNVYSDSRYVCNGINLWLKSWIS-----KQFKNVKNPDLWQLYLQVSSPHQVIAHWV 117
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGHAG +NE D++A+ +A + NK
Sbjct: 118 KGHAGVAQNELCDKLAKESAQFYLNK 143
>gi|16331755|ref|NP_442483.1| ribonuclease H [Synechocystis sp. PCC 6803]
gi|6685893|sp|Q55801|RNH_SYNY3 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|1001716|dbj|BAA10553.1| ribonuclease H [Synechocystis sp. PCC 6803]
Length = 160
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 69/143 (48%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTA 62
V YTDGACS NPGPGG+G ++ Y + S G K TTNNRME+M AI AL+
Sbjct: 3 STPNSVTLYTDGACSMNPGPGGYGAVILYGDGRREELSAGYKMTTNNRMEIMGAIAALSH 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L+ P +VLLYTDS Y+ S+ KKW+ NGW+ + K+ KN DLW + +H+V
Sbjct: 63 LQEPSQVLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKAKNPDLWETMLTLCEKHQVT 122
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
W+K HAGN+ENE+ DR+A A
Sbjct: 123 FQWVKAHAGNKENERCDRLAVAA 145
>gi|291563229|emb|CBL42045.1| Ribonuclease HI [butyrate-producing bacterium SS3/4]
Length = 159
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKA 59
++ V YTDGA GNP GPGG+G +L++ EK +S G TTNNRMELMAAI
Sbjct: 1 MK-VTLYTDGAARGNPDGPGGYGAVLQFIDKNGTLHEKELSAGYVRTTNNRMELMAAIVG 59
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQH 118
L AL C+V LY+DS Y+ F+Q VKN DLW + + A H
Sbjct: 60 LEALNRSCEVDLYSDSKYLVDAFNQKWIDGWVKHNWVRPKTGPVKNSDLWKRLLVAMNPH 119
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
KV +W+KGH G+ NE+ DR+A +AA
Sbjct: 120 KVTFHWVKGHDGHPGNERCDRLATSAAD 147
>gi|260888192|ref|ZP_05899455.1| ribonuclease H [Selenomonas sputigena ATCC 35185]
gi|260862026|gb|EEX76526.1| ribonuclease H [Selenomonas sputigena ATCC 35185]
Length = 234
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Query: 10 HAYTDGACSGNP-GPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
H YTDG+C NP GPGGW V ++R + + +SGG TTNNRME+ AAI+AL L
Sbjct: 93 HVYTDGSCLRNPNGPGGWAVCIVRPGEEMETLSGGNPSTTNNRMEMTAAIEALRHLPKRE 152
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++L TDS Y+ G ++WI W++ GWK +D V N +LW + A + W+KG
Sbjct: 153 PIVLSTDSQYLKNGITKWIFSWKRRGWKKADGTPVLNQELWQELDGLIAGRSIIFRWVKG 212
Query: 128 HAGNQENEKVDRIARNAAVSF 148
HAG++ NE D +A+ A +F
Sbjct: 213 HAGHKYNEICDMLAKREAQAF 233
>gi|108801314|ref|YP_641511.1| ribonuclease H [Mycobacterium sp. MCS]
gi|119870465|ref|YP_940417.1| ribonuclease H [Mycobacterium sp. KMS]
gi|108771733|gb|ABG10455.1| ribonuclease H [Mycobacterium sp. MCS]
gi|119696554|gb|ABL93627.1| ribonuclease H [Mycobacterium sp. KMS]
Length = 154
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 97/145 (66%), Gaps = 4/145 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKA 59
MD++ V +TDG C NPGPGGWG +LR++ + + GGE T+NNRMEL A I A
Sbjct: 1 MDTEP---VIIHTDGGCRPNPGPGGWGAVLRHRNHIREMCGGEPGATSNNRMELTAPIMA 57
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L AL P V L+TDS+YV G ++W+ W++NGW T+ K+ VKN+DLW + A A+H+
Sbjct: 58 LEALTRPVVVHLHTDSTYVRNGITKWVLGWERNGWLTAAKQPVKNVDLWQRLQAACARHR 117
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V+ +W+KGH+G +NE D++A
Sbjct: 118 VEWFWVKGHSGVADNELADQLATRG 142
>gi|323699193|ref|ZP_08111105.1| Ribonuclease H [Desulfovibrio sp. ND132]
gi|323459125|gb|EGB14990.1| Ribonuclease H [Desulfovibrio desulfuricans ND132]
Length = 161
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 95/147 (64%), Gaps = 8/147 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
V YTDG+C GNPGPGG+G +L + + K +S G K TTNNRMEL+A I
Sbjct: 3 DRVTMYTDGSCLGNPGPGGYGAILIHGEYQGENGANYKELSQGYKRTTNNRMELLAVIVG 62
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L++L PC V L+TDS YV + +Q K WQ+NGWKT+ KK VKN DLW + + +H
Sbjct: 63 LSSLTRPCTVDLWTDSKYVQQAITQRWLKNWQRNGWKTAAKKPVKNQDLWQRLMPLIEEH 122
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAA 145
V +W+KGHAG+ NE+VD +AR AA
Sbjct: 123 DVTFHWVKGHAGHLLNERVDDLARGAA 149
>gi|15611673|ref|NP_223324.1| ribonuclease H [Helicobacter pylori J99]
gi|6685895|sp|Q9ZLH3|RNH_HELPJ RecName: Full=Ribonuclease HI; Short=RNase HI
gi|4155158|gb|AAD06187.1| RIBONUCLEASE HI [Helicobacter pylori J99]
Length = 143
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++E+ + DG+ GNPGPGG+ +LRYK KEK ISGGE TTNNRMEL A +AL LK
Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKR 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + LY+DS YV + + W+ WQ + VKN+DLW +FV+ S H + WI
Sbjct: 61 PCHITLYSDSQYVCQAINVWLVNWQ-----KKNFAKVKNVDLWKEFVKVSKGHSIVAVWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH G+ ENE+ + +A+ A
Sbjct: 116 KGHNGHAENERCNSLAKLEAQK 137
>gi|110639090|ref|YP_679299.1| ribonuclease HI [Cytophaga hutchinsonii ATCC 33406]
gi|110281771|gb|ABG59957.1| RNase HI [Cytophaga hutchinsonii ATCC 33406]
Length = 159
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ GNPGPGG+GV+L YK K ISGG + TTNNRMEL+A I L ALK P
Sbjct: 2 ITLYTDGSSRGNPGPGGFGVVLLYKQHRKEISGGFRMTTNNRMELLAVITGLEALKDPGH 61
Query: 69 -VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
VL+Y+DS YV + GW + K KN DLW +++ S++HK+ W++G
Sbjct: 62 DVLIYSDSKYVIDSVEKGWL----MGWVKKNFKDKKNEDLWRRYLYVSSKHKIRFQWVRG 117
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HAGN ENE+ D +A AA +I
Sbjct: 118 HAGNIENERCDVLATQAADGPNKQI 142
>gi|302386456|ref|YP_003822278.1| Ribonuclease H [Clostridium saccharolyticum WM1]
gi|302197084|gb|ADL04655.1| Ribonuclease H [Clostridium saccharolyticum WM1]
Length = 158
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ +V +TDGA GNP GPGG+G +L++ EK +S G +TTNNRMELMAAI
Sbjct: 1 MTKVLLFTDGAARGNPDGPGGYGAVLQFTDSKGQLHEKTLSAGYVKTTNNRMELMAAIAG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC+V LY+DS YV F+Q + VKNIDLW + ++A H
Sbjct: 61 LEALTRPCQVELYSDSKYVTDAFNQHWIENWVKNNWKRGKSGPVKNIDLWERLLKAKEPH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V +W+KGHAG+ +NE+ D +A +AA
Sbjct: 121 EVTFHWVKGHAGHPQNERCDMLATSAAD 148
>gi|266624291|ref|ZP_06117226.1| ribonuclease HI [Clostridium hathewayi DSM 13479]
gi|288863872|gb|EFC96170.1| ribonuclease HI [Clostridium hathewayi DSM 13479]
Length = 158
Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ +V +TDGA GNP GPGG+G +L++ EK +S G TTNNRMELMAAI
Sbjct: 1 MGKVLLFTDGAARGNPDGPGGYGAVLQFTDSKGQLHEKTLSAGYVRTTNNRMELMAAIAG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC+V LY+DS YV F+Q VKNIDLW + ++A H
Sbjct: 61 LEALNRPCEVELYSDSKYVTDAFNQHWIDNWVKNNWKRGKSGPVKNIDLWKRLLKAMEPH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGHAG+ ENE+ D++A AA
Sbjct: 121 RVTFCWVKGHAGHPENERCDQLATTAAD 148
>gi|312127598|ref|YP_003992472.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
gi|311777617|gb|ADQ07103.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
Length = 145
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 79/138 (57%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIRKVLKGFERYTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q +KWQ+NGWKTS+K+ VKNIDLW + +E HKV
Sbjct: 61 PCKVIIYSDSAYIVNAVNQNWIEKWQKNGWKTSEKEEVKNIDLWNELIELLKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGHA N+ N DRIAR
Sbjct: 121 VKGHADNELNNLCDRIAR 138
>gi|283953746|ref|ZP_06371277.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni 414]
gi|283794787|gb|EFC33525.1| ribonuclease HI [Campylobacter jejuni subsp. jejuni 414]
Length = 146
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +L YK +K G E TTNNRMELMA I++L LK
Sbjct: 1 MKHIKIYTDGSCLNNPGFGGWAYILCYKEYQKEGFGAEANTTNNRMELMAIIESLKVLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ L+TDS+ + + ++W++ W D K KNIDLW ++++ + HK+ +WI
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEGWI-----KKDFKGKKNIDLWKEYIKVAKSHKIKAFWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H G+ ENE+ D +AR AA+ +
Sbjct: 116 KAHNGHLENERCDTLAREAALKIARE 141
>gi|258450511|gb|ACV72185.1| ribonuclease H [uncultured organism]
Length = 139
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/136 (52%), Positives = 90/136 (66%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ +TDGACSGNPGPGGW +LR EK +SGGEK TTNNRMELMA I+ L ALK
Sbjct: 2 SIEIFTDGACSGNPGPGGWAAILRSGHHEKELSGGEKATTNNRMELMAVIEGLKALKKKS 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V ++TDS YV G S+WI W++ GWKT+DKK VKN DLW E A+H+V W+ G
Sbjct: 62 AVTIHTDSRYVMDGASKWILGWKKKGWKTADKKAVKNEDLWRMLDEEMARHEVHWVWVAG 121
Query: 128 HAGNQENEKVDRIARN 143
H+ + E+ D +A
Sbjct: 122 HSRSPRKERADALANR 137
>gi|162148870|ref|YP_001603331.1| ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
gi|209545380|ref|YP_002277609.1| ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
gi|161787447|emb|CAP57043.1| putative ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
gi|209533057|gb|ACI52994.1| ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
Length = 169
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/140 (50%), Positives = 97/140 (69%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDG C NPGPGGW VLL+ +G E+ +SGGE ETTNNRMEL AA +AL ALK PC+
Sbjct: 20 VEIWTDGGCKPNPGPGGWAVLLKCRGTERELSGGEAETTNNRMELTAAAEALEALKRPCR 79
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+L+TDS YV G ++W W + W+ + V N+DLW + ++ SA+H V W++GH
Sbjct: 80 VVLHTDSEYVRNGITRWHTGWVRRNWRNASGDPVANMDLWRRLLDISARHDVTWRWVRGH 139
Query: 129 AGNQENEKVDRIARNAAVSF 148
+G++ NE+VDR+A A +
Sbjct: 140 SGDENNERVDRLATAARDAL 159
>gi|154149229|ref|YP_001407135.1| ribonuclease H [Campylobacter hominis ATCC BAA-381]
gi|153805238|gb|ABS52245.1| RNase H [Campylobacter hominis ATCC BAA-381]
Length = 141
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C GNPG GGW +L + G EK GGE TTNN+MEL AAI+ L ALK
Sbjct: 1 MKSVKLFSDGSCLGNPGIGGWAYILEFNGHEKCECGGEMLTTNNKMELRAAIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V ++TDSSYV + W++KW + K +N++LW +F+ SA HK+ +W+
Sbjct: 61 PCEVKIFTDSSYVTNSINGWLEKWVA-----KNFKGKQNVELWREFLRVSAMHKISAFWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ +NE+ D +ARN A + K
Sbjct: 116 KGHAGHPQNERCDEMARNFAQNLK 139
>gi|283851386|ref|ZP_06368667.1| ribonuclease H [Desulfovibrio sp. FW1012B]
gi|283573124|gb|EFC21103.1| ribonuclease H [Desulfovibrio sp. FW1012B]
Length = 162
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ +TDGAC GNPGPGG+G ++ G +SGG + TTNNRMEL+A I+AL +L+ P
Sbjct: 11 TITIHTDGACLGNPGPGGYGAVMDVDGSRIELSGGCRLTTNNRMELLAVIEALESLESPS 70
Query: 68 KVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V L TDS YVH + WQ+ GW ++KK VKN DLW + + H + W++
Sbjct: 71 DVTLITDSRYVHDAIEKKWIVSWQKKGWLNAEKKPVKNQDLWRRLIPLLKIHAIKFCWVR 130
Query: 127 GHAGNQENEKVDRIARNAAV 146
GH GN +NE+ D +A+NAA
Sbjct: 131 GHTGNPDNERCDILAKNAAN 150
>gi|291277477|ref|YP_003517249.1| ribonuclease HI [Helicobacter mustelae 12198]
gi|290964671|emb|CBG40526.1| ribonuclease HI [Helicobacter mustelae 12198]
Length = 145
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V Y DG+ GNPG GG+ +LRYK +EKI+ G TTNNRMEL+A I+A+ ALK
Sbjct: 1 MKKVEIYCDGSSLGNPGFGGYCAILRYKKQEKILCGAVSHTTNNRMELLAVIEAIKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC++ +Y+DS YV G +WI W D K VKN DLW +F+ S HK+ +WI
Sbjct: 61 PCQITIYSDSRYVCDGVEKWIFHWI-----KKDFKNVKNPDLWREFLRVSLHHKIQTHWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH+ + ENEK D IAR A K +
Sbjct: 116 KGHSNHAENEKCDTIAREQAKKLKEQ 141
>gi|159901221|ref|YP_001547468.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
gi|159894260|gb|ABX07340.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
Length = 236
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 83/138 (60%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V ++DG GNPGPGG+GV+LR + + ++GG TTNNRMELM I L AL P
Sbjct: 86 KVVLFSDGGSDGNPGPGGYGVVLRSGSEMRELTGGFARTTNNRMELMGVITGLQALSQPS 145
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
KV++Y+DS+YV G + + + VKN DLW + +E + H ++ + G
Sbjct: 146 KVVVYSDSAYVINGMHKGWAERWSKNGWRTTTGPVKNPDLWQQLLELAQGHTIEWVQVPG 205
Query: 128 HAGNQENEKVDRIARNAA 145
HAG ++NE+ DR+A AA
Sbjct: 206 HAGVKDNERCDRLAVQAA 223
>gi|37523181|ref|NP_926558.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
gi|35214184|dbj|BAC91553.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
Length = 213
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
TDGACSGNPGPGGW L+ +G + + G E TTNNRME+ A I+ LT + KV
Sbjct: 4 IATDGACSGNPGPGGWAALVVGEGTYEEVFGFEPHTTNNRMEMRAVIEGLTRVPADAKVK 63
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS YV KG S+W+ W++ GW TS K + +E + +V ++GH G
Sbjct: 64 VLTDSQYVIKGMSEWLPGWKRRGWITSTGKP-VENRDLWEALERAVGGRVLWEHVRGHTG 122
Query: 131 NQENEKVDRIARNAAV 146
+ ENE+ + +A+ AA
Sbjct: 123 HPENERANTLAQTAAR 138
>gi|291550932|emb|CBL27194.1| Ribonuclease HI [Ruminococcus torques L2-14]
Length = 157
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G +L Y + +K +S G ++TTNNRMELMA I L A
Sbjct: 3 VKIYTDGAARGNPDGPGGYGTVLEYVDTKGQLHKKELSQGYEKTTNNRMELMAVIAGLEA 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L C+V +Y+DS YV F+Q + VKN+DLW + +EA +H V
Sbjct: 63 LNRSCEVEVYSDSQYVVNAFNQHWVDGWIKKGWKRGKNEPVKNVDLWKRLLEAKQKHSVT 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH G+ +NE+ D +A AA
Sbjct: 123 FHWVKGHDGHPQNERCDELATTAAD 147
>gi|330838466|ref|YP_004413046.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
gi|329746230|gb|AEB99586.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
Length = 240
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Query: 10 HAYTDGACSGNP-GPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
H YTDG+C NP GPGGW V ++R + + +SGG TTNNRME+ AAI+AL L
Sbjct: 99 HVYTDGSCLRNPNGPGGWAVCIVRPGEEMETLSGGNPSTTNNRMEMTAAIEALRHLPKRE 158
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++L TDS Y+ G ++WI W++ GWK +D V N +LW + A + W+KG
Sbjct: 159 PIVLSTDSQYLKNGITKWIFSWKRRGWKKADGTPVLNQELWQELDGLIAGRSIIFRWVKG 218
Query: 128 HAGNQENEKVDRIARNAAVSF 148
HAG++ NE D +A+ A +F
Sbjct: 219 HAGHKYNEICDMLAKREAQAF 239
>gi|27904726|ref|NP_777852.1| ribonuclease HI [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|29427408|sp|P59434|RNH_BUCBP RecName: Full=Ribonuclease H; Short=RNase H
gi|27904123|gb|AAO26957.1| ribonuclease HI [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
Length = 153
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/141 (47%), Positives = 93/141 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ + ++DG+C GNPGPGG+ ++++ E I S G TTNNRMELM I A +LK
Sbjct: 2 LKTIKIFSDGSCLGNPGPGGYSFIIQHLEYENISSSGFYLTTNNRMELMGIIVATESLKQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC + + TDS YV KG WIK W+ GWKTS K VKN+DLW++ ++ H+V WI
Sbjct: 62 PCCITISTDSQYVQKGILYWIKNWKTKGWKTSRKTYVKNVDLWLRLEKSLNLHQVTWKWI 121
Query: 126 KGHAGNQENEKVDRIARNAAV 146
K H+GN++NE+ D +AR +A
Sbjct: 122 KSHSGNKKNEQCDHLARESAK 142
>gi|148244507|ref|YP_001219201.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
gi|187611402|sp|A5CX29|RNH_VESOH RecName: Full=Ribonuclease H; Short=RNase H
gi|146326334|dbj|BAF61477.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
Length = 148
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA-LTALK 64
+ + YTDG C N G GGWGV L+Y +K + G EK+TTNNRMEL A IKA
Sbjct: 2 MNRIVIYTDGGCRCNTGIGGWGVWLKYGDYDKKLKGNEKKTTNNRMELTATIKALEEIKS 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ L+TDS YV G ++W+K W+ W+TS K+ VKN+DLW + + QH V YW
Sbjct: 62 NQIGIDLFTDSKYVITGINEWMKNWKVKNWETSKKRPVKNVDLWQRLDVLNKQHDVIWYW 121
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
+K H+ N+ N+ D +A A
Sbjct: 122 VKSHSNNKGNDIADELANLAMDKI 145
>gi|312793523|ref|YP_004026446.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180663|gb|ADQ40833.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 145
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFERYTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q ++WQ+NGWKTS+ + VKNIDLW + +E HKV
Sbjct: 61 PCKVVIYSDSAYIVNAVNQNWIERWQKNGWKTSENEEVKNIDLWNELLELLKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGHA N+ N D+IAR
Sbjct: 121 VKGHADNELNNLCDQIAR 138
>gi|118594820|ref|ZP_01552167.1| Ribonuclease H [Methylophilales bacterium HTCC2181]
gi|118440598|gb|EAV47225.1| Ribonuclease H [Methylophilales bacterium HTCC2181]
Length = 144
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/143 (46%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPG GGWG L+ + K + GGEK TTNNRMELMA I A+ ++
Sbjct: 2 IKVYTDGACKGNPGDGGWGALIINGSENKELYGGEKNTTNNRMELMAVIMAIESIDRIQD 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V ++TDS+YV KG S+WI W++NGWK+S+K+ VKN DLW+ +++ ++ W+KGH
Sbjct: 62 VTIFTDSTYVQKGISEWIINWKRNGWKSSNKQPVKNQDLWV-RLDSLNSEQITWQWVKGH 120
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
+G+ EN++ D +A S +
Sbjct: 121 SGHIENDRADYLANLGVHSSSQQ 143
>gi|312135156|ref|YP_004002494.1| ribonuclease h [Caldicellulosiruptor owensensis OL]
gi|311775207|gb|ADQ04694.1| Ribonuclease H [Caldicellulosiruptor owensensis OL]
Length = 145
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/138 (54%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFERHTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q ++WQ+NGWKTS+K+ VKNIDLW + + HKV
Sbjct: 61 PCKVVIYSDSAYIVNAVNQNWIERWQKNGWKTSEKEEVKNIDLWNELINLLKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGH+ N+ N D+IAR
Sbjct: 121 VKGHSDNELNNLCDQIAR 138
>gi|302871859|ref|YP_003840495.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
gi|302574718|gb|ADL42509.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
Length = 145
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFERHTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q +KWQ+NGWKTS+K+ VKNIDLW + + HKV
Sbjct: 61 PCKVVIYSDSAYIVNAVNQNWIEKWQKNGWKTSEKEEVKNIDLWNELINLLKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGH+ N+ N D+IAR
Sbjct: 121 VKGHSDNELNNLCDQIAR 138
>gi|158421438|ref|YP_001527665.1| ribonuclease H [Deinococcus geothermalis DSM 11300]
gi|158342681|gb|ABW34967.1| Ribonuclease H [Deinococcus geothermalis DSM 11300]
Length = 159
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S L V TDGACSGNPGPGGW +L + +SGGE +TTNNRMEL A ++ L A
Sbjct: 2 SPPLTAVRLVTDGACSGNPGPGGWACILSSGASTRELSGGEAQTTNNRMELTALLEGLRA 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK PC+V + +DS Y+ F Q Q K DLW EA+ H +
Sbjct: 62 LKRPCQVHVVSDSRYIIDAFEQGWLAGWQAKGWKKVKNP----DLWQAIAEAARGHTLTF 117
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W++GHAG+ ENE+ D++A A +
Sbjct: 118 EWVQGHAGHPENERADQLAVQAREQAARQ 146
>gi|312875962|ref|ZP_07735951.1| ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
gi|311797160|gb|EFR13500.1| ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
Length = 145
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 77/138 (55%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFERYTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q ++WQ+NGWKTS+K+ VKNIDLW + +E HKV
Sbjct: 61 PCKVVIYSDSAYIVNAVNQNWIERWQKNGWKTSEKEEVKNIDLWNELIELLKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGHA N+ N D+IAR
Sbjct: 121 VKGHADNELNNLCDQIAR 138
>gi|222529331|ref|YP_002573213.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
gi|222456178|gb|ACM60440.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
Length = 145
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 80/138 (57%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G E+ TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFERYTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q +KWQ+NGWKTS+K+ VKNIDLW + VE HKV
Sbjct: 61 PCKVVIYSDSAYIVNAVNQNWIEKWQKNGWKTSEKEEVKNIDLWNELVELMKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGHA N+ N DRIAR
Sbjct: 121 VKGHADNELNNLCDRIAR 138
>gi|148260650|ref|YP_001234777.1| ribonuclease H [Acidiphilium cryptum JF-5]
gi|326403844|ref|YP_004283926.1| ribonuclease H [Acidiphilium multivorum AIU301]
gi|187611386|sp|A5FZ26|RNH_ACICJ RecName: Full=Ribonuclease H; Short=RNase H
gi|146402331|gb|ABQ30858.1| RNase HI [Acidiphilium cryptum JF-5]
gi|325050706|dbj|BAJ81044.1| ribonuclease H [Acidiphilium multivorum AIU301]
Length = 160
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 94/151 (62%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M S+ V +TDG C NPG GGW +LR+ E+ +SG E+ETTNNRMEL AA AL
Sbjct: 1 MASEPGGLVEIWTDGGCKPNPGAGGWAAVLRFGAAEREMSGAERETTNNRMELTAAAAAL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC+V L+TDS Y+ G ++W W + W+ + V N +LW + + A+ H++
Sbjct: 61 EALKRPCRVKLHTDSEYLRNGITRWHTGWVRRNWRNAQGDPVANYELWQRVLAAAKPHEI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W++GHAG+ NE+VD++A A + +
Sbjct: 121 EWIWVRGHAGDPMNERVDQLATAAREAMLRE 151
>gi|312622423|ref|YP_004024036.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002]
gi|312202890|gb|ADQ46217.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002]
Length = 145
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 81/138 (58%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACSGNPGPGGW +L YKG +K++ G EK TTNNRMEL A ++AL ALK
Sbjct: 1 MKEVTIYTDGACSGNPGPGGWCAILIYKGIKKVLKGFEKYTTNNRMELKAVVEALKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV++Y+DS+Y+ +Q +KWQ+NGWKTS+K+ VKNIDLW + VE HKV
Sbjct: 61 PCKVVIYSDSAYIVNAINQNWIEKWQKNGWKTSEKEEVKNIDLWNELVELMKIHKVTFEK 120
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGHA N+ N DRIAR
Sbjct: 121 VKGHADNELNNLCDRIAR 138
>gi|168177749|ref|ZP_02612413.1| ribonuclease HI [Clostridium botulinum NCTC 2916]
gi|226947635|ref|YP_002802726.1| ribonuclease H [Clostridium botulinum A2 str. Kyoto]
gi|182671095|gb|EDT83069.1| ribonuclease HI [Clostridium botulinum NCTC 2916]
gi|226842777|gb|ACO85443.1| ribonuclease HI [Clostridium botulinum A2 str. Kyoto]
Length = 149
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L+ PC V LY+DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LREPCSVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|220929176|ref|YP_002506085.1| ribonuclease H [Clostridium cellulolyticum H10]
gi|219999504|gb|ACL76105.1| ribonuclease H [Clostridium cellulolyticum H10]
Length = 145
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 67/143 (46%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ YTDGACSGNPG GGWG +L Y + ISG EK TTNN+MEL AA +AL LK
Sbjct: 1 MKQIEIYTDGACSGNPGAGGWGAVLMYGEHKIEISGFEKSTTNNKMELTAAYEALKRLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V LY+DS+Y+ F Q KW +NGWK + + VKN+DLW + V+ + H++
Sbjct: 61 PCRVNLYSDSAYLVNAFLQGWLDKWIKNGWKRNKNEEVKNVDLWKELVKLADIHEIKWIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHA N+ N + D++A +
Sbjct: 121 VKGHADNEYNNRCDKLATDEIKK 143
>gi|330836697|ref|YP_004411338.1| RNase HI [Spirochaeta coccoides DSM 17374]
gi|329748600|gb|AEC01956.1| RNase HI [Spirochaeta coccoides DSM 17374]
Length = 153
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ ++ YTDG CSGNPGPGGW +L+ SGGE TTNNRMEL A I++L K
Sbjct: 1 MNDLTIYTDGGCSGNPGPGGWAYLILKNGSLIAEGSGGEDLTTNNRMELNAVIESLRCAK 60
Query: 65 Y--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
P + + TDS YV G + WI W++NGW+T+ + VKN + W+ E +A +
Sbjct: 61 TLSPSSITVRTDSQYVKNGITTWILAWKRNGWRTASRDPVKNKEYWLTLDELAAGLPLTW 120
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
+W+KGHAG + NE+ D + R
Sbjct: 121 HWVKGHAGIEHNERCDAMVRTEMDKI 146
>gi|170758946|ref|YP_001785742.1| ribonuclease H [Clostridium botulinum A3 str. Loch Maree]
gi|169405935|gb|ACA54346.1| ribonuclease HI [Clostridium botulinum A3 str. Loch Maree]
Length = 149
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I K+TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFKDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK C V LY+DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LKESCSVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|323486961|ref|ZP_08092276.1| hypothetical protein HMPREF9474_04027 [Clostridium symbiosum
WAL-14163]
gi|323692008|ref|ZP_08106256.1| ribonuclease H [Clostridium symbiosum WAL-14673]
gi|323399733|gb|EGA92116.1| hypothetical protein HMPREF9474_04027 [Clostridium symbiosum
WAL-14163]
gi|323503931|gb|EGB19745.1| ribonuclease H [Clostridium symbiosum WAL-14673]
Length = 158
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 87/148 (58%), Gaps = 8/148 (5%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
++ V YTDG+ GNP GPGG+G +L Y+ K ISGG K TTNNRMELMAA+
Sbjct: 1 MK-VEIYTDGSARGNPDGPGGFGTVLHYRDGSGQLHVKEISGGYKRTTNNRMELMAAVAG 59
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC+V LY+DS Y+ F+Q + VKNIDLW + + A H
Sbjct: 60 LEALNRPCEVSLYSDSKYLVDAFNQRWIDGWIKKGWKRGKNEPVKNIDLWQRLLAAKEPH 119
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGH G+ ENE+ D +A +AA
Sbjct: 120 QVTFIWVKGHNGHPENERCDFLATSAAD 147
>gi|313157300|gb|EFR56725.1| ribonuclease HI [Alistipes sp. HGB5]
Length = 154
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
+ ++ YTDG+ GNPGPGG+G +L K +S G + TTNNRMEL A AL A
Sbjct: 1 MAQITIYTDGSALGNPGPGGYGAVLLSGPHRKELSQGFRLTTNNRMELTAVCAALEALKF 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V +Y+DS YV ++ + K DLWM+F+ +H V W
Sbjct: 61 EGSDVTVYSDSKYVVDAVTKGWVFGWEKKRFAGKKNP----DLWMRFLRIYRRHNVRFVW 116
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+KGHA EN + D++A AA
Sbjct: 117 VKGHADTVENNRCDQLAVAAAN 138
>gi|328943902|ref|ZP_08241367.1| ribonuclease HI [Atopobium vaginae DSM 15829]
gi|327491871|gb|EGF23645.1| ribonuclease HI [Atopobium vaginae DSM 15829]
Length = 183
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V +TDG+ GNPGPGG+G ++ + + ++ +S G ++TTNNRMEL+A I AL
Sbjct: 23 QVIIWTDGSSRGNPGPGGYGAVMLFYDSAGREHKRELSCGYRQTTNNRMELLAPIIALEE 82
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LKYPCKV L++DS YV F Q WQ+ GWKT++K+ VKN+DLW + + A H++
Sbjct: 83 LKYPCKVELHSDSQYVIHAFQQHWIDGWQKRGWKTANKQPVKNVDLWKRLLRAMQPHEMS 142
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG + NE+ D +A AA +
Sbjct: 143 FVWVKGHAGTELNERCDELATTAADA 168
>gi|148378405|ref|YP_001252946.1| ribonuclease HI [Clostridium botulinum A str. ATCC 3502]
gi|153930802|ref|YP_001382783.1| ribonuclease H [Clostridium botulinum A str. ATCC 19397]
gi|153936460|ref|YP_001386334.1| ribonuclease H [Clostridium botulinum A str. Hall]
gi|153938993|ref|YP_001389773.1| ribonuclease H [Clostridium botulinum F str. Langeland]
gi|187611360|sp|A7FR34|RNH_CLOB1 RecName: Full=Ribonuclease H; Short=RNase H
gi|187611361|sp|A5HYU6|RNH_CLOBH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611362|sp|A7GAG3|RNH_CLOBL RecName: Full=Ribonuclease H; Short=RNase H
gi|148287889|emb|CAL81955.1| ribonuclease Hi [Clostridium botulinum A str. ATCC 3502]
gi|152926846|gb|ABS32346.1| ribonuclease HI [Clostridium botulinum A str. ATCC 19397]
gi|152932374|gb|ABS37873.1| ribonuclease HI [Clostridium botulinum A str. Hall]
gi|152934889|gb|ABS40387.1| ribonuclease HI [Clostridium botulinum F str. Langeland]
gi|295317862|gb|ADF98239.1| ribonuclease HI [Clostridium botulinum F str. 230613]
Length = 149
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC + LY+DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LKEPCSIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|308234079|ref|ZP_07664816.1| ribonuclease H [Atopobium vaginae DSM 15829]
Length = 172
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+V +TDG+ GNPGPGG+G ++ + + ++ +S G ++TTNNRMEL+A I AL
Sbjct: 12 QVIIWTDGSSRGNPGPGGYGAVMLFYDSAGREHKRELSCGYRQTTNNRMELLAPIIALEE 71
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LKYPCKV L++DS YV F Q WQ+ GWKT++K+ VKN+DLW + + A H++
Sbjct: 72 LKYPCKVELHSDSQYVIHAFQQHWIDGWQKRGWKTANKQPVKNVDLWKRLLRAMQPHEMS 131
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG + NE+ D +A AA +
Sbjct: 132 FVWVKGHAGTELNERCDELATTAADA 157
>gi|295698438|ref|YP_003603093.1| RNase H [Candidatus Riesia pediculicola USDA]
gi|291157184|gb|ADD79629.1| RNase H [Candidatus Riesia pediculicola USDA]
Length = 166
Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/141 (46%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+EV ++DG+C NPGPGG+G +LRY EKI+S G TTNNRMEL+ I L +L+Y
Sbjct: 8 KEVQIFSDGSCLRNPGPGGYGTILRYYKYEKILSKGYFLTTNNRMELIGVIVGLESLRYS 67
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V++ TDS+YV +G ++WI W++ WK S+ V NIDLW++ + +HK+ IK
Sbjct: 68 CNVIVTTDSNYVCQGGTKWIYLWKKKNWKRSNGLPVSNIDLWIRMNKIIKKHKIKWNLIK 127
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ EN D++A+NAA +
Sbjct: 128 GHSGHLENTFCDKLAKNAANN 148
>gi|188996194|ref|YP_001930445.1| ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931261|gb|ACD65891.1| ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
Length = 149
Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 71/143 (49%), Positives = 98/143 (68%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + + DG+ GNPGPGG+ ++ K+ I+ GGEK+TTNNRMELMA IKAL +K
Sbjct: 1 MKTIKIFADGSSLGNPGPGGYCSIITDGEKKAIVKGGEKQTTNNRMELMAVIKALEKIKN 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + W++KW++NGWKTS+KK V NIDLW K + +H V YWI
Sbjct: 61 SYNIELYTDSKYVVDGINSWLEKWKKNGWKTSNKKDVLNIDLWQKLDQLLQRHNVKAYWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH G+ ENE D++A+ A+ +
Sbjct: 121 KGHNGHPENEYCDKVAKMEALKY 143
>gi|170757863|ref|YP_001780057.1| ribonuclease H [Clostridium botulinum B1 str. Okra]
gi|169123075|gb|ACA46911.1| ribonuclease HI [Clostridium botulinum B1 str. Okra]
Length = 149
Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC + LY+DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LKKPCSIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|187776989|ref|ZP_02993462.1| hypothetical protein CLOSPO_00534 [Clostridium sporogenes ATCC
15579]
gi|187773917|gb|EDU37719.1| hypothetical protein CLOSPO_00534 [Clostridium sporogenes ATCC
15579]
Length = 149
Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC V +Y+DS+YV +Q W++N WKT+ K VKN +LW E +H V
Sbjct: 61 LKEPCNVEVYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWENLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|237752000|ref|ZP_04582480.1| ribonuclease H [Helicobacter winghamensis ATCC BAA-430]
gi|229376567|gb|EEO26658.1| ribonuclease H [Helicobacter winghamensis ATCC BAA-430]
Length = 141
Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 97/145 (66%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V + DG+ GNPG GGW +LRYK EK++SGG + TNN+MEL A I +L ALK
Sbjct: 1 MKCVTLFCDGSSLGNPGFGGWCGILRYKESEKVLSGGARVATNNQMELTALIMSLEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+VL+ DS YV G S+W+ W + K VKN +LW ++++A+ HK+ + W+
Sbjct: 61 PCEVLVVCDSKYVLDGLSKWLPNWIA-----KNFKNVKNTELWQRYIKAAKPHKIKVEWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ ENE+ D+IA+ A+ FKN
Sbjct: 116 KGHSGHCENERCDKIAKEEALKFKN 140
>gi|325283762|ref|YP_004256303.1| Ribonuclease H [Deinococcus proteolyticus MRP]
gi|324315571|gb|ADY26686.1| Ribonuclease H [Deinococcus proteolyticus MRP]
Length = 180
Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V ++DGAC G GGW +LRY E ++SG E++TTNNRMEL ++ L AL+ P
Sbjct: 37 QRVTLFSDGACDTTKGHGGWATILRYGEHELVLSGNERDTTNNRMELRGLLEGLQALRRP 96
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNG-WKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+V + TDS Y+ K F+ WKT+ ++ VKN DLW ++ + H++ W+
Sbjct: 97 CQVQVVTDSQYLRKAFTDSWITGWMRNGWKTASREPVKNQDLWEALIDQARTHELTFVWV 156
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
KGHAG+ ENE+VD +A +
Sbjct: 157 KGHAGHSENERVDELAVQERKKLR 180
>gi|168181269|ref|ZP_02615933.1| ribonuclease HI [Clostridium botulinum Bf]
gi|237793724|ref|YP_002861276.1| ribonuclease H [Clostridium botulinum Ba4 str. 657]
gi|182675272|gb|EDT87233.1| ribonuclease HI [Clostridium botulinum Bf]
gi|229263857|gb|ACQ54890.1| ribonuclease HI [Clostridium botulinum Ba4 str. 657]
Length = 149
Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC V LY+DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LKEPCSVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMNEF 147
>gi|166030910|ref|ZP_02233739.1| hypothetical protein DORFOR_00591 [Dorea formicigenerans ATCC
27755]
gi|166029177|gb|EDR47934.1| hypothetical protein DORFOR_00591 [Dorea formicigenerans ATCC
27755]
Length = 150
Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G +L Y + K +S G ++TTNNRMELMA I L A
Sbjct: 3 VSIYTDGAARGNPDGPGGYGTILEYVDSKGELHIKELSKGYEKTTNNRMELMAVIAGLEA 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L PC V LY+DS YV F+Q + VKN+DLW + +EA H V
Sbjct: 63 LNRPCDVKLYSDSKYVVDAFNQNWIGGWLKKGWKRGKNEPVKNVDLWKRLLEAKEPHNVT 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGH G+ +NE+ D +A +AA + +
Sbjct: 123 FIWVKGHDGHPQNERCDELATSAADAMR 150
>gi|146296908|ref|YP_001180679.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|187611354|sp|A4XKQ3|RNH_CALS8 RecName: Full=Ribonuclease H; Short=RNase H
gi|145410484|gb|ABP67488.1| RNase HI [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 145
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++EV YTDGACS NPGPGGW +L YKG +K++ G E+ TTNNRMEL A I+ L ALK
Sbjct: 1 MKEVVIYTDGACSKNPGPGGWCAILIYKGIKKVLKGFEENTTNNRMELKAIIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV +YTDS+Y+ +Q KWQ+N WKTS+K+ VKNIDLW + +E H V
Sbjct: 61 PCKVTVYTDSAYIVNAINQNWIGKWQKNNWKTSEKEEVKNIDLWQELLEFLKVHNVKFEK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
+KGH+ + N D IAR+ +
Sbjct: 121 VKGHSTDTLNNMCDEIARSMIKEMR 145
>gi|300864655|ref|ZP_07109512.1| putative RNase H [Oscillatoria sp. PCC 6506]
gi|300337316|emb|CBN54660.1| putative RNase H [Oscillatoria sp. PCC 6506]
Length = 302
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAI-- 57
M ++ YTDGACSGNPGPGGWGV++ + G + + G + + TNNRME+ AAI
Sbjct: 1 MTLPKVKS--IYTDGACSGNPGPGGWGVVICFANGDIQELGGADAKATNNRMEMQAAIAA 58
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ LYTDS Y+ G ++WI+ W++ GWKTS V N DLW E +
Sbjct: 59 LEWFAKSGQAEPATLYTDSEYLKNGITKWIQGWKRKGWKTSTGAPVINQDLWELLDELNC 118
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
+H + ++GH+G++ N++ D IAR
Sbjct: 119 KH-IQWQHVRGHSGDRYNDRCDEIARA 144
>gi|167753119|ref|ZP_02425246.1| hypothetical protein ALIPUT_01390 [Alistipes putredinis DSM 17216]
gi|167659433|gb|EDS03563.1| hypothetical protein ALIPUT_01390 [Alistipes putredinis DSM 17216]
Length = 155
Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKALTALK 64
+ E+ YTDG+ GNPGPGG+G +L K +S G + TTNNRMEL+A +
Sbjct: 1 MPEITIYTDGSALGNPGPGGYGAVLISGRFRKEVSQGYRLTTNNRMELLAVCVALEMLKF 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V +Y+DS YV + + K DLW +F+ + +HKV W
Sbjct: 61 EGSDVTIYSDSKYVVDAVEKRWVFGWEKKGFAGKKNP----DLWSRFLRSYRRHKVRFVW 116
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+KGHA EN + D++A AA
Sbjct: 117 VKGHADTVENNRCDQLAVAAAN 138
>gi|114328541|ref|YP_745698.1| ribonuclease H [Granulibacter bethesdensis CGDNIH1]
gi|122326505|sp|Q0BQX7|RNH_GRABC RecName: Full=Ribonuclease H; Short=RNase H
gi|114316715|gb|ABI62775.1| ribonuclease HI [Granulibacter bethesdensis CGDNIH1]
Length = 150
Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats.
Identities = 68/136 (50%), Positives = 92/136 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDG C NPGPGGW +L Y+G EK +SG + ETTNNRMEL AA AL AL PCK
Sbjct: 11 VEIWTDGGCKPNPGPGGWAAILLYRGTEKELSGFDPETTNNRMELTAAAAALEALTRPCK 70
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+L TDS YV G ++W W + W+ + V N+DLW + ++A+A+H++D W++GH
Sbjct: 71 VVLNTDSEYVRNGITRWKDGWVRRNWRNASGDPVANMDLWRRLLDAAARHEIDWRWVRGH 130
Query: 129 AGNQENEKVDRIARNA 144
AGN NE+ D++A A
Sbjct: 131 AGNPMNERADQLATKA 146
>gi|289449960|ref|YP_003474948.1| ribonuclease HI [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184507|gb|ADC90932.1| ribonuclease HI [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 156
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/142 (45%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+++ +V YTDGACSGNPG GGW +L ++K ISG E TTNNRMEL A I+AL L
Sbjct: 2 ENMMKVTIYTDGACSGNPGAGGWAAVLMVADRKKEISGYEATTTNNRMELQAVIEALKCL 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K+ C+V LY+DS+YV F Q WQ+NGWK + K+ V N D W + + S H++
Sbjct: 62 KFSCEVDLYSDSAYVVNAFKQNWLGNWQKNGWKNAAKQDVSNKDQWQELLRLSKLHRITW 121
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+ ++GH+ N N + D +A A
Sbjct: 122 HKVRGHSDNIYNNRCDELAVAA 143
>gi|325265099|ref|ZP_08131826.1| ribonuclease HI [Clostridium sp. D5]
gi|324029789|gb|EGB91077.1| ribonuclease HI [Clostridium sp. D5]
Length = 157
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L Y K +S G +TTNNRMELMA I L
Sbjct: 2 QVKLYTDGAARGNPDGPGGYGAVLEYVDGKGSLHTKELSQGYVKTTNNRMELMAVISGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V +Y+DS YV F+Q + VKN+DLW + + A AQH+V
Sbjct: 62 ALNRPCTVEVYSDSKYVVDAFNQHWIDGWLKKGWKRGKNEPVKNVDLWKRLLAAKAQHRV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH G+ +NE+ D +A AA
Sbjct: 122 TFHWVKGHDGHPQNERCDELATTAAD 147
>gi|283797889|ref|ZP_06347042.1| ribonuclease HI [Clostridium sp. M62/1]
gi|291074579|gb|EFE11943.1| ribonuclease HI [Clostridium sp. M62/1]
Length = 158
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 87/148 (58%), Gaps = 8/148 (5%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
++ V YTDGA GNP GPGG+G +L Y K +S G + TTNNRMELMAAI
Sbjct: 1 MK-VEIYTDGAARGNPDGPGGFGTVLHYTDTRGQLHVKELSAGYRRTTNNRMELMAAIAG 59
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L AL PC+V LY+DS Y+ F+Q + VKN+DLW + + A++ H
Sbjct: 60 LEALNRPCQVELYSDSKYLVDAFNQHWIDGWIKKGWKRGKNEPVKNVDLWKRLLAAASPH 119
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
K+ W+KGH G+ ENE+ D +A +AA
Sbjct: 120 KITFIWVKGHNGHPENERCDFLATSAAD 147
>gi|242309255|ref|ZP_04808410.1| ribonuclease HI [Helicobacter pullorum MIT 98-5489]
gi|239524296|gb|EEQ64162.1| ribonuclease HI [Helicobacter pullorum MIT 98-5489]
Length = 143
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V + DG+ GNPG GGW +LRYK EKI+ G K TNN+MEL A I +L ALK
Sbjct: 1 MKRVTLFCDGSSLGNPGYGGWCGILRYKNYEKILKGSAKNVTNNQMELSALIFSLEALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+VL+ +DS YV G S+W+ W D K +KN DLW +++ S +H + W+
Sbjct: 61 PCEVLVVSDSKYVLDGLSKWLPNWIA-----KDFKNIKNPDLWKHYLQVSKKHHIITEWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GH G++ENE D+IA+ A+ K +
Sbjct: 116 RGHNGHKENELCDKIAKEEALKLKEQ 141
>gi|145222426|ref|YP_001133104.1| ribonuclease H [Mycobacterium gilvum PYR-GCK]
gi|315442872|ref|YP_004075751.1| ribonuclease HI [Mycobacterium sp. Spyr1]
gi|187611380|sp|A4T6Y5|RNH_MYCGI RecName: Full=Ribonuclease H; Short=RNase H
gi|145214912|gb|ABP44316.1| ribonuclease H [Mycobacterium gilvum PYR-GCK]
gi|315261175|gb|ADT97916.1| ribonuclease HI [Mycobacterium sp. Spyr1]
Length = 151
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT-NNRMELMAAIKALTALKYPC 67
V +TDG C NPGPGGWG +LR + + + GGE T NNRMEL A I AL AL P
Sbjct: 5 VVIHTDGGCRPNPGPGGWGAVLRQRHHVREMCGGEPAQTSNNRMELTAPIMALEALTRPV 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V LYTDS+YV G ++W+ W++NGW T+ K+ VKN DLW + A A+H+V+ +W+KG
Sbjct: 65 SVHLYTDSTYVRNGITKWVLGWERNGWMTAAKQPVKNADLWRRLQSACARHEVEWFWVKG 124
Query: 128 HAGNQENEKVDRIARNA 144
H+G +NE D +A
Sbjct: 125 HSGVADNELADVLATRG 141
>gi|58038659|ref|YP_190623.1| ribonuclease H [Gluconobacter oxydans 621H]
gi|81819175|sp|Q5FUH9|RNH_GLUOX RecName: Full=Ribonuclease H; Short=RNase H
gi|58001073|gb|AAW59967.1| Ribonuclease H [Gluconobacter oxydans 621H]
Length = 150
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/141 (47%), Positives = 93/141 (65%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDG C NPGPGGWG LL +G+EK + GG+ ETTNNRMEL AA +AL ALK PC
Sbjct: 10 RVEIWTDGGCKPNPGPGGWGALLVCRGQEKELLGGDPETTNNRMELTAAAEALEALKRPC 69
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS Y+ G ++W W + W+ + V N+DLW + +EA+ H++D W+KG
Sbjct: 70 IVTLHTDSEYLRNGITRWHTGWVRRKWRNAAGDPVANMDLWQRILEAAKPHEIDWLWVKG 129
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G++ NE+VD++A
Sbjct: 130 HSGDENNERVDQLATRGREEL 150
>gi|167758345|ref|ZP_02430472.1| hypothetical protein CLOSCI_00685 [Clostridium scindens ATCC 35704]
gi|167664242|gb|EDS08372.1| hypothetical protein CLOSCI_00685 [Clostridium scindens ATCC 35704]
Length = 159
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L Y + + +S G K TTNNRMELMA I L
Sbjct: 2 QVKIYTDGAARGNPDGPGGYGTVLEYVDSKGELHTRELSQGYKRTTNNRMELMAVIAGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC+V LY+DS YV F+Q + VKNIDLW + ++A A H+V
Sbjct: 62 ALNRPCQVELYSDSKYVVDAFNQHWIDGWIKKGWKRGKNEPVKNIDLWQRLLKAKAPHQV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G+ +NE+ D +A AA
Sbjct: 122 QFIWVKGHDGHPQNERCDTLATTAAD 147
>gi|237756461|ref|ZP_04584997.1| ribonuclease HI [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691375|gb|EEP60447.1| ribonuclease HI [Sulfurihydrogenibium yellowstonense SS-5]
Length = 149
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 70/143 (48%), Positives = 97/143 (67%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + + DG+ GNPGPGG+ ++ K+ ++ GGEK TTNNRMELMA IKAL +K
Sbjct: 1 MKTLKIFADGSSLGNPGPGGYCSIITDGEKKAVVKGGEKLTTNNRMELMAVIKALEKIKN 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LYTDS YV G + W++KW++NGWKTS+KK V NIDLW K + +H V YWI
Sbjct: 61 SYNIELYTDSKYVVDGINSWLEKWKKNGWKTSNKKDVLNIDLWQKLDQLLQRHNVKAYWI 120
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGH G+ ENE D++A+ A+ +
Sbjct: 121 KGHNGHPENEYCDKVAKMEALKY 143
>gi|283780271|ref|YP_003371026.1| ribonuclease H [Pirellula staleyi DSM 6068]
gi|283438724|gb|ADB17166.1| Ribonuclease H [Pirellula staleyi DSM 6068]
Length = 157
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 98/148 (66%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
EV +TDGACSGNPGPGGW +LR+ GKEK SGGE ETTNNRMEL A ++ L AL
Sbjct: 9 EVLLFTDGACSGNPGPGGWAYILRHVASGKEKECSGGELETTNNRMELTAVVEGLRALTR 68
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS---DKKTVKNIDLWMKFVEASAQHKVDL 122
V + TDS YV KG S+W+ W++NGW+ K VKN+DLW + E A+H++ L
Sbjct: 69 TTAVEVLTDSEYVRKGMSEWMAGWKRNGWQRKENGKLKPVKNVDLWKQLDELVAKHQLKL 128
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G+ EN++ D +A A+ + +N
Sbjct: 129 TRVAGHSGHPENDRCDELAVAASYAVRN 156
>gi|326800686|ref|YP_004318505.1| ribonuclease H [Sphingobacterium sp. 21]
gi|326551450|gb|ADZ79835.1| Ribonuclease H [Sphingobacterium sp. 21]
Length = 154
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LKYPC 67
+ +TDGA SGNPGPGG+GV+LR K +S G ++TTNNRMEL+A I L A K
Sbjct: 2 IEIFTDGASSGNPGPGGYGVILRAGQYYKELSEGFRKTTNNRMELLAVIVGLEALKKPGH 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +Y+DS YV + GW KN+DLW++F++ H++ W+KG
Sbjct: 62 HVTIYSDSKYVIDAVEKKWV----FGWLKKGFAGKKNMDLWLRFLQVYKLHQIKFVWVKG 117
Query: 128 HAGNQENEKVDRIARNA 144
HAG+ ENE+ D++A A
Sbjct: 118 HAGHPENERCDQLAVQA 134
>gi|225572275|ref|ZP_03781139.1| hypothetical protein RUMHYD_00569 [Blautia hydrogenotrophica DSM
10507]
gi|225040248|gb|EEG50494.1| hypothetical protein RUMHYD_00569 [Blautia hydrogenotrophica DSM
10507]
Length = 161
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G LL + + S G K+TTNNRMELMAAI L A
Sbjct: 3 VKIYTDGAARGNPDGPGGYGTLLHFTDAKGQLHVREFSQGYKKTTNNRMELMAAIVGLEA 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L PC+V LY+DS Y+ F+Q + VKN DLW + + A H+V
Sbjct: 63 LTRPCQVELYSDSKYLVDAFNQHWIDSWLKKGWKRGKNEPVKNKDLWQRLLRAKEPHQVS 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGH G+ ENE+ D++A AA
Sbjct: 123 FHWVKGHDGHPENERCDQLATAAAD 147
>gi|255284137|ref|ZP_05348692.1| ribonuclease HI [Bryantella formatexigens DSM 14469]
gi|255265311|gb|EET58516.1| ribonuclease HI [Bryantella formatexigens DSM 14469]
Length = 160
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G +L Y E+ S G ++TTNNRMELMAAI L A
Sbjct: 3 VKIYTDGAARGNPDGPGGYGTILHYTDTKGVLHERTFSQGYEKTTNNRMELMAAIIGLEA 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L PC+V LY+DS Y+ F++ Q + VKN++LW + + A H+V
Sbjct: 63 LNRPCQVELYSDSKYLTDAFNRHWIDSWQRKGWKRGKNEPVKNVELWKRLLAAMEPHEVS 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G++ NE+ DR+A +AA
Sbjct: 123 FIWVKGHDGHELNERCDRLATSAAD 147
>gi|160880514|ref|YP_001559482.1| ribonuclease H [Clostridium phytofermentans ISDg]
gi|187611363|sp|A9KLJ9|RNH_CLOPH RecName: Full=Ribonuclease H; Short=RNase H
gi|160429180|gb|ABX42743.1| Ribonuclease H [Clostridium phytofermentans ISDg]
Length = 158
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L Y + SGG K+TTNNRMELMAAI L
Sbjct: 2 KVTIYTDGAARGNPDGPGGYGTILSYIDSTGVEHIREYSGGYKKTTNNRMELMAAIVGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LY+DS YV K F++ + VKN+DLW + + A QH V
Sbjct: 62 ALTKPCVVTLYSDSQYVVKAFNEHWLDGWIKKGWKRGKNEPVKNVDLWKRLLAAKNQHDV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G+ +NE+ D +A AA
Sbjct: 122 TFCWVKGHDGHPQNERCDVLATTAAD 147
>gi|303248895|ref|ZP_07335143.1| ribonuclease H [Desulfovibrio fructosovorans JJ]
gi|302489694|gb|EFL49629.1| ribonuclease H [Desulfovibrio fructosovorans JJ]
Length = 162
Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++K R+ V +TDGAC GNPGPGG+ + G+ + GG K TTNNRMEL+AAI+AL
Sbjct: 4 EAKTPRQAVTIHTDGACLGNPGPGGYSAIWEIDGERVELCGGRKLTTNNRMELLAAIEAL 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
AL+ P V L TDS YVH + WQ+ GW ++KK VKN DLW + + H
Sbjct: 64 EALESPTDVTLITDSRYVHDAIEKRWLAGWQKRGWVNAEKKPVKNQDLWRRLIPLLKIHN 123
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ +W++GH GN +NE+ D +A+ AA S
Sbjct: 124 IKFHWVRGHTGNPDNERCDVLAKKAANS 151
>gi|120405855|ref|YP_955684.1| ribonuclease H [Mycobacterium vanbaalenii PYR-1]
gi|119958673|gb|ABM15678.1| ribonuclease H [Mycobacterium vanbaalenii PYR-1]
Length = 154
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 69/137 (50%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALKYPC 67
V +TDG C NPGPGGWG +LR + + + GGE T+NNRMELMA I AL AL P
Sbjct: 6 VIIHTDGGCRPNPGPGGWGAVLRQRDHVREMFGGEAGATSNNRMELMAPIMALEALTRPV 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+YV G ++W+ W++NGW T+ K+ VKN+DLW + ASAQH+V+ +W+KG
Sbjct: 66 VVHLHTDSTYVRNGITKWVFGWERNGWMTAAKQPVKNVDLWQRLQIASAQHRVEWFWVKG 125
Query: 128 HAGNQENEKVDRIARNA 144
H+G +NE D +A
Sbjct: 126 HSGIADNELADALATRG 142
>gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379]
gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379]
Length = 482
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/136 (41%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DG+ + GPGG+GV+LRY EK +SG E T+ RMEL AAI+ L AL P +
Sbjct: 292 VEIYCDGSGR-DSGPGGYGVILRYGESEKELSGFEPVATSQRMELTAAIRGLEALHKPRQ 350
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +++DS Y+ +G ++W+++W ++G +KN DLW + SA+H+V W++GH
Sbjct: 351 VRVFSDSQYLVRGMAEWLERWIRSGRL-ETPDALKNQDLWQRLAGLSAKHQVSWEWVRGH 409
Query: 129 AGNQENEKVDRIARNA 144
G+ NE+ DR+A+ A
Sbjct: 410 DGHPFNERCDRLAKRA 425
>gi|322804682|emb|CBZ02234.1| ribonuclease HI [Clostridium botulinum H04402 065]
Length = 149
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V YTDGAC GN G +G++L Y +K I ++TTNN MEL A ++AL+
Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
LK PC + L++DS+YV +Q W++N WKT+ K VKN +LW K E +H V
Sbjct: 61 LKEPCSIELHSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGH+ N+ N + D++A A F
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDEF 147
>gi|325661925|ref|ZP_08150545.1| ribonuclease H [Lachnospiraceae bacterium 4_1_37FAA]
gi|331085791|ref|ZP_08334874.1| ribonuclease H [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325471777|gb|EGC74995.1| ribonuclease H [Lachnospiraceae bacterium 4_1_37FAA]
gi|330406714|gb|EGG86219.1| ribonuclease H [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
V YTDGA GNP GPGG+G +L Y + + +SGG + TTNNRMELMA IK L
Sbjct: 2 HVKIYTDGAARGNPDGPGGYGTVLEYVDRKGELHTRELSGGYRRTTNNRMELMAVIKGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LY+DS YV F+Q + VKN+DLW + + A QH+V
Sbjct: 62 ALNRPCSVELYSDSKYVVDAFNQHWIDGWIKKGWKRGKNEPVKNVDLWKRLLTAKEQHQV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G+ +NE+ D +A AA
Sbjct: 122 TFIWVKGHDGHPQNERCDTLATTAAD 147
>gi|326202101|ref|ZP_08191971.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
gi|325987896|gb|EGD48722.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
Length = 145
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDGACSGNPG GGWG +L Y + ISG EK TTNN+MEL AA +AL LK
Sbjct: 1 MKQVEIYTDGACSGNPGAGGWGAVLMYGEHKVEISGFEKSTTNNKMELTAAFEALKRLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PCKV LY+DS+Y+ F Q KW +NGWK + + VKNI+LW + V + H++
Sbjct: 61 PCKVNLYSDSAYLVNAFLQGWLDKWIKNGWKRNKNEEVKNIELWKELVRLADIHEIKWIK 120
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+KGHA N N + D++A +
Sbjct: 121 VKGHADNVYNNRCDKLATDEIKK 143
>gi|163849928|ref|YP_001637971.1| ribonuclease H [Methylobacterium extorquens PA1]
gi|163661533|gb|ABY28900.1| ribonuclease H [Methylobacterium extorquens PA1]
Length = 143
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ Y DG C NPG GGWG ++ + GGE TTNNRMEL AAI+AL
Sbjct: 2 RIVVYADGGCEPNPGTGGWGAVISGTDGAIELYGGELATTNNRMELTAAIRALEHFHDGA 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V + DS YV K ++W+ W+ GW+TS V+N+DL + E ++ H V W++G
Sbjct: 62 QVEMRCDSQYVVKSITEWMPGWKARGWRTSK-GLVQNLDLMQRLDELNSLHDVCWIWVRG 120
Query: 128 HAGNQENEKVDRIARNA 144
H+G+ NE+ DR+A
Sbjct: 121 HSGDPRNERADRLAAQG 137
>gi|302670883|ref|YP_003830843.1| ribonuclease H [Butyrivibrio proteoclasticus B316]
gi|302395356|gb|ADL34261.1| ribonuclease H [Butyrivibrio proteoclasticus B316]
Length = 162
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
V Y+DG+ GNP GPGG+G +LRY + EK +S G +TTNNRMELM AI L
Sbjct: 2 RVEIYSDGSARGNPDGPGGYGTILRYVDAKGEVHEKELSAGYDKTTNNRMELMGAIVGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFS-QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL PC V +++DS Y+ K F+ +WI W + GWKT+ K VKN++LW + + A H +
Sbjct: 62 ALNRPCDVEMFSDSQYIIKAFNDKWIDGWIKKGWKTAGNKPVKNVELWKRLLAACEPHGI 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
W+KGHAG+ ENE+ D++A AA
Sbjct: 122 RWNWVKGHAGHAENERCDQLATAAADQ 148
>gi|255536482|ref|YP_003096853.1| Ribonuclease HI [Flavobacteriaceae bacterium 3519-10]
gi|255342678|gb|ACU08791.1| Ribonuclease HI [Flavobacteriaceae bacterium 3519-10]
Length = 160
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAI-KALTALK 64
+ YTDGACSGNPG GG+G++++ K EK S G + TTNNRMEL+A I
Sbjct: 4 RIEIYTDGACSGNPGKGGYGIVMKVPEKNYEKHFSKGFRLTTNNRMELLAVIVALEKLKS 63
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ +YTDS YV ++ GW K VKN DLW + V A HK +W
Sbjct: 64 PDNDIHIYTDSKYVSDAINKKWLL----GWIKKGYKNVKNPDLWRRMVPLLATHKTTFHW 119
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
IKGHAG+ ENE D++A AA S K
Sbjct: 120 IKGHAGHPENEICDQLAVKAAQSGK 144
>gi|268680595|ref|YP_003305026.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
gi|268618626|gb|ACZ12991.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
Length = 142
Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ + DG+ GNPG GG+ +LR+ EKIISGG + TNN+MEL+A IK L AL+
Sbjct: 1 MKKISLFCDGSSLGNPGAGGYCAILRFGDAEKIISGGMADATNNQMELLAVIKGLEALRE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V L +DSSYV +G ++W+ GW VKN +LW ++E S HKV W+
Sbjct: 61 PCDVTLVSDSSYVVRGINEWL-----VGWVKKGFVKVKNPELWQAYLEVSKGHKVKGVWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GH G+ ENE D+IA+ A+ K K
Sbjct: 116 RGHDGHVENEMCDKIAKEEAMKIKEK 141
>gi|254423771|ref|ZP_05037489.1| RNase H, putative [Synechococcus sp. PCC 7335]
gi|196191260|gb|EDX86224.1| RNase H, putative [Synechococcus sp. PCC 7335]
Length = 312
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 89/148 (60%), Gaps = 10/148 (6%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDGACSGNPGPGGWG L+ + G+ + G + +TTNNRME+ AAI AL L
Sbjct: 7 EIYTDGACSGNPGPGGWGTLIEFADGQRHELGGRDAKTTNNRMEMQAAIAALEFLSSNSI 66
Query: 69 ----VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-----ASAQHK 119
V L+TDS Y+ G ++WIK W++ GWKTS K V N DLW + + + Q
Sbjct: 67 DSGAVTLHTDSEYLKNGITKWIKGWKRKGWKTSSGKPVLNKDLWQQLDQLSQTLTTEQIN 126
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+D +++GH GN NE+ D IAR A S
Sbjct: 127 IDWRYVRGHTGNLGNERCDEIARAYAHS 154
>gi|257457922|ref|ZP_05623081.1| ribonuclease HI [Treponema vincentii ATCC 35580]
gi|257444635|gb|EEV19719.1| ribonuclease HI [Treponema vincentii ATCC 35580]
Length = 160
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 15/157 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR--------YKGKEKIISGGEKETTNNRMELMAAI-- 57
++ YTDGACS NPGPGGW ++ + + SGGEK TTNNRMEL+A I
Sbjct: 4 KIKLYTDGACSQNPGPGGWAFVMILKDIQGGQPEQELLRGSGGEKLTTNNRMELLAVIQA 63
Query: 58 -----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ + C V L+TDS YV +G S WIKKW+ NGW+T+ ++ VKN DLW +
Sbjct: 64 LTAYQEKILPRYADCPVTLHTDSQYVQQGISSWIKKWKLNGWRTAAREPVKNQDLWQQLD 123
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
++Q ++ W+KGHAGN+ NE D +A AA K
Sbjct: 124 SLASQISLEWMWVKGHAGNRYNELCDTLAVEAAKQAK 160
>gi|210612271|ref|ZP_03289219.1| hypothetical protein CLONEX_01419 [Clostridium nexile DSM 1787]
gi|210151645|gb|EEA82652.1| hypothetical protein CLONEX_01419 [Clostridium nexile DSM 1787]
Length = 158
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L + + K +S G K+TTNNRMELMA I L
Sbjct: 2 KVKIYTDGAARGNPDGPGGYGTVLEFIDSKGQLHTKELSCGYKKTTNNRMELMAVIAGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC++ LY+DS YV F+Q + VKN+DLW + ++A H++
Sbjct: 62 ALNRPCEIELYSDSKYVVDAFNQHWIDGWLKKGWKRGKNEPVKNVDLWKRLLKAKEPHQI 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G+ +NE+ D +A AA
Sbjct: 122 TFIWVKGHDGHPQNERCDTLATTAAD 147
>gi|160892698|ref|ZP_02073488.1| hypothetical protein CLOL250_00228 [Clostridium sp. L2-50]
gi|156865739|gb|EDO59170.1| hypothetical protein CLOL250_00228 [Clostridium sp. L2-50]
Length = 161
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G ++++ E+ S G +TTNNRMELMAAI L
Sbjct: 2 DVKIYTDGAARGNPDGPGGYGTVIQFIDGKGTLHEREFSQGYNKTTNNRMELMAAIVGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LY+DS Y+ K F++ + VKN DLW + ++A H V
Sbjct: 62 ALIKPCNVELYSDSQYLVKAFNEGWIWGWIKKGWKRGKNEPVKNRDLWERLLKAKEPHTV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG+ NE+ D +A AA
Sbjct: 122 TFHWVKGHAGHPMNERCDMLATTAAD 147
>gi|163846848|ref|YP_001634892.1| ribonuclease H [Chloroflexus aurantiacus J-10-fl]
gi|222524669|ref|YP_002569140.1| Ribonuclease H [Chloroflexus sp. Y-400-fl]
gi|163668137|gb|ABY34503.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl]
gi|222448548|gb|ACM52814.1| Ribonuclease H [Chloroflexus sp. Y-400-fl]
Length = 264
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDG+ GNPGPGG+GV+LRY + ++GG + TTNNRMELMA I L ALK P
Sbjct: 109 VMMYTDGSALGNPGPGGYGVVLRYNDHYQELTGGFRLTTNNRMELMACIVGLRALKRPVS 168
Query: 69 VLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L++DS YV F + WI +WQ W S+ + VKN DLW + H+V+ W+ G
Sbjct: 169 VRLHSDSRYVVDAFRKGWIHRWQAQNWMRSETEPVKNADLWAELRLLCEGHQVEFVWVPG 228
Query: 128 HAGNQENEKVDRIARNAA 145
H G +NE+ +A AA
Sbjct: 229 HQGVPDNERCHELAIAAA 246
>gi|326329906|ref|ZP_08196221.1| ribonuclease H (RNase H) [Nocardioidaceae bacterium Broad-1]
gi|325952297|gb|EGD44322.1| ribonuclease H (RNase H) [Nocardioidaceae bacterium Broad-1]
Length = 324
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GWG + + GG TNN+ EL A + L +
Sbjct: 2 TIVAAADGSALGNPGPAGWGWYV---DESTWACGGWPHGTNNQGELTAVLDLLQQTAHTG 58
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+L+Y DS YV ++W+ W++ GWK +D K V N+++ + A V WIK
Sbjct: 59 EPLLIYCDSKYVINSVTKWMAGWKRKGWKKADGKPVLNVEIMKELDAAMQGRNVRFEWIK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH+G+ NE DR+A AA++++
Sbjct: 119 GHSGHPLNEAADRLANGAALAYQE 142
>gi|255532857|ref|YP_003093229.1| Ribonuclease H [Pedobacter heparinus DSM 2366]
gi|255345841|gb|ACU05167.1| Ribonuclease H [Pedobacter heparinus DSM 2366]
Length = 157
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGA SGNPGPGG+GV+LR K +S G + TTNNRMELMA I L ALK P +
Sbjct: 2 IEIYTDGAASGNPGPGGYGVILRSGNHYKELSAGFRLTTNNRMELMAVIVGLNALKTPGQ 61
Query: 69 -VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +++DS YV + K DLWM+F+ + H V WIKG
Sbjct: 62 EVTVFSDSKYVIDSVEKKWVFGWVKTGFKGKKNK----DLWMQFLNSYKLHHVKFVWIKG 117
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + ENE+ D++A A+ +
Sbjct: 118 HNNHPENERCDQLAVAASKN 137
>gi|330004205|ref|ZP_08304831.1| ribonuclease HI [Klebsiella sp. MS 92-3]
gi|328536722|gb|EGF63043.1| ribonuclease HI [Klebsiella sp. MS 92-3]
Length = 189
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 5 HLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
L+EV YTDG+C NPG GG ++R+ K + G + TTNNRME++AAI+ L L
Sbjct: 31 RLKEVVLYTDGSCLKNPGGAGGVAAIVRFGEHYKTVQEGFRSTTNNRMEMLAAIRGLDLL 90
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
C V +YTDS Y+ G S WIK W++ GWK ++ + VKN+DLW + A + H+V
Sbjct: 91 NQKCNVTIYTDSQYLINGISLWIKGWKKRGWKLANGERVKNVDLWQELDAAVSGHRVRWC 150
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+KGH GN +NE D +AR+AA S
Sbjct: 151 WVKGHDGNPDNELCDMMARSAAES 174
>gi|225570507|ref|ZP_03779532.1| hypothetical protein CLOHYLEM_06608 [Clostridium hylemonae DSM
15053]
gi|225160704|gb|EEG73323.1| hypothetical protein CLOHYLEM_06608 [Clostridium hylemonae DSM
15053]
Length = 157
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L Y + K +S G K+TTNNRMELMA I L
Sbjct: 2 QVKIYTDGAARGNPDGPGGYGTVLEYVDSRGELHTKELSQGYKKTTNNRMELMAVIAGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC++ LY+DS YV F+Q + VKN+DLW + ++A HKV
Sbjct: 62 ALNRPCEIELYSDSKYVVDAFNQRWIDGWIKKGWKRGKNEPVKNVDLWQRLLKAKEPHKV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH G+ +NE+ D +A AA
Sbjct: 122 TFIWVKGHDGHVQNERCDTLATTAAD 147
>gi|325281570|ref|YP_004254112.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
gi|324313379|gb|ADY33932.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
Length = 161
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LKYPC 67
+ YTDGA SGNPGPGG+GV+L+ K + G ++TTNNRMEL+A I L A +
Sbjct: 5 IIIYTDGAASGNPGPGGFGVVLKAGVYRKELMAGFRKTTNNRMELLAVIVGLEALKQPGW 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V++Y+DS YV + GW+ K KN DLW +F+ QH+V W+KG
Sbjct: 65 QVVVYSDSRYVVDAVEKGWV----FGWEKKGFKDKKNPDLWKRFLAIYRQHQVKFVWVKG 120
Query: 128 HAGNQENEKVDRIARNA 144
HA ENE+ D++A A
Sbjct: 121 HADIPENERCDQLAVQA 137
>gi|330993991|ref|ZP_08317921.1| Ribonuclease H [Gluconacetobacter sp. SXCC-1]
gi|329758937|gb|EGG75451.1| Ribonuclease H [Gluconacetobacter sp. SXCC-1]
Length = 157
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 70/140 (50%), Positives = 98/140 (70%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDG C NPGPGGW LL Y+G+E+ +SGGE ETTNNRMEL AA +AL ALK PC+
Sbjct: 8 VEIWTDGGCKPNPGPGGWAALLCYRGQERELSGGEAETTNNRMELTAAAEALEALKRPCR 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V+L+TDS YV G ++W W + W+ + V N+DLW + +E SA+H+++ W++GH
Sbjct: 68 VVLHTDSEYVRNGITRWSTGWVRRKWRNASGDPVANMDLWRRLLEISARHEIEWKWVRGH 127
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN NE+VD++A A +
Sbjct: 128 SGNVNNERVDQMATAARDAL 147
>gi|21672520|ref|NP_660587.1| ribonuclease H [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gi|585902|sp|Q08885|RNH_BUCAP RecName: Full=Ribonuclease H; Short=RNase H
gi|349619|gb|AAA17434.1| ribonuclease H [Buchnera aphidicola]
gi|21623142|gb|AAM67798.1| ribonuclease H [Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 161
Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 93/142 (65%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V ++DG+C GNPG GG+G +LRYK EKI++ G TTNNRMELM I L +LK
Sbjct: 2 LKLVKMFSDGSCLGNPGSGGYGTILRYKLHEKILTSGFFLTTNNRMELMGVICGLESLKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V + DS YV +G + WI W++ WKT+ KK +KN+DLW++ H + +W+
Sbjct: 62 SCIVEITIDSQYVKQGITNWIATWEKKKWKTTKKKLIKNLDLWLRINAVIKNHHITWFWV 121
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
K H G+ ENE+ D+IAR +A S
Sbjct: 122 KAHMGHLENERCDKIARQSAQS 143
>gi|198282703|ref|YP_002219024.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667538|ref|YP_002424895.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
gi|254808020|sp|B7J4E2|RNH_ACIF2 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808021|sp|B5EMD8|RNH_ACIF5 RecName: Full=Ribonuclease H; Short=RNase H
gi|198247224|gb|ACH82817.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519751|gb|ACK80337.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 158
Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 90/142 (63%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + +TDG C GNPG G WGV LR G+E+++ G ETTNNRMEL AA++ L ALK P
Sbjct: 4 KIIELFTDGGCRGNPGIGAWGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLEALKRP 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V + +DS Y+ G +QW+ WQ+ GW+T+ VKN D+W +A+H+V W++
Sbjct: 64 SAVRVISDSRYLRDGMTQWLAGWQRRGWRTAGGDAVKNRDIWELLAAVAARHQVQWEWVR 123
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GH+G+ ENE+VD + +
Sbjct: 124 GHSGHIENERVDALLNRVMDQY 145
>gi|320105042|ref|YP_004180633.1| RNase HI [Isosphaera pallida ATCC 43644]
gi|319752324|gb|ADV64084.1| RNase HI [Isosphaera pallida ATCC 43644]
Length = 159
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKYP 66
V YTDGACSGNPGPGGW +L + K SG E ETTNNRMEL + IK L ALK P
Sbjct: 12 VKLYTDGACSGNPGPGGWAFVLIHPATGKQLSDSGAEAETTNNRMELTSVIKGLEALKRP 71
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS---DKKTVKNIDLWMKFVEASAQHKVDLY 123
C V + TDS YV KG +W+ W+ GW+ K V N DLW + E + +H++ +
Sbjct: 72 CVVEIVTDSDYVRKGILEWMAGWKARGWQRKDGGKLKPVLNADLWKRIDELADRHQLRVT 131
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+ GH+G+ ENE DR+A A
Sbjct: 132 HVAGHSGHPENELCDRMAVAAYRKL 156
>gi|15805924|ref|NP_294623.1| ribonuclease H [Deinococcus radiodurans R1]
gi|6458617|gb|AAF10474.1|AE001942_6 ribonuclease H [Deinococcus radiodurans R1]
Length = 179
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y+DGAC G GGW +LRY +E ++SG E+ TTNNRMEL ++ L L+ PC+
Sbjct: 37 VELYSDGACDTTKGHGGWATILRYGERELVLSGNEENTTNNRMELRGLLEGLRTLRRPCQ 96
Query: 69 VLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + TDS Y+ K F+ WQ+NGWKT+ K+ VKN DLW + +E + H + W+KG
Sbjct: 97 VKVITDSQYLRKAFTDGWILNWQRNGWKTASKEPVKNQDLWEELIELAKVHALTFLWVKG 156
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG+ ENE+VD +A +
Sbjct: 157 HAGHGENERVDELAVLERKKLRK 179
>gi|325103140|ref|YP_004272794.1| RNase HI [Pedobacter saltans DSM 12145]
gi|324971988|gb|ADY50972.1| RNase HI [Pedobacter saltans DSM 12145]
Length = 156
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKALTALKYPC 67
+ +TDGA SGNPGPGG+GV+LR K IS G + TTNNRMEL+A I K
Sbjct: 2 IELFTDGAASGNPGPGGYGVILRSGPHYKEISDGFRLTTNNRMELLAVCIGLEAIKKPGQ 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +Y+DS YV + GW + KN DLW++ + + H + L W+KG
Sbjct: 62 NVTIYSDSKYVIDAIDKKWV----FGWVKKGFEGKKNKDLWLRLLNSYRLHHIKLVWVKG 117
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HAG+ ENE+ D++A A+ KI
Sbjct: 118 HAGHPENERCDQLAVQASKGSNLKI 142
>gi|315453269|ref|YP_004073539.1| ribonuclease HI [Helicobacter felis ATCC 49179]
gi|315132321|emb|CBY82949.1| ribonuclease HI [Helicobacter felis ATCC 49179]
Length = 147
Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ E+ + DG+ GNPG GG+ +LRY+G+EKII+GG TTNNRMEL A L ALK
Sbjct: 1 MEEIELFCDGSSLGNPGAGGYCAILRYQGQEKIITGGAPHTTNNRMELSAVNAGLKALKK 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC V LY+DS+YV G ++W+K WQ + N+DLW +F++ SA HK+ +WI
Sbjct: 61 PCHVALYSDSTYVCDGIAKWLKGWQARNFAKVK-----NVDLWQEFLKVSAPHKITPHWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+GHAG+ +NE+ D +A+ A++++ +
Sbjct: 116 RGHAGHVQNERCDALAKQEALAYQAQ 141
>gi|149278368|ref|ZP_01884505.1| ribonuclease HI [Pedobacter sp. BAL39]
gi|149230738|gb|EDM36120.1| ribonuclease HI [Pedobacter sp. BAL39]
Length = 157
Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGA SGNPGPGG+GV+LR K +SGG + TTNNRMEL+A I L ALK P +
Sbjct: 2 IEIYTDGAASGNPGPGGYGVILRSGNHYKELSGGFRMTTNNRMELLAVIVGLNALKTPGQ 61
Query: 69 -VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V++++DS YV + K KN DLW++F+E H+V WIKG
Sbjct: 62 EVMIFSDSKYVVDSVEKKWVFGWVKKG----FKDKKNKDLWLRFLEVYKLHQVRFTWIKG 117
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + ENE+ D +A A+ +
Sbjct: 118 HNAHPENERCDVLAVAASKN 137
>gi|328947155|ref|YP_004364492.1| ribonuclease H [Treponema succinifaciens DSM 2489]
gi|328447479|gb|AEB13195.1| Ribonuclease H [Treponema succinifaciens DSM 2489]
Length = 152
Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ + YTDG C GNPG GGWG ++ KE SGGEK TTNNRMELMAAI AL ++
Sbjct: 2 ENNSGIVVYTDGGCRGNPGCGGWGCVIIDGEKEYKFSGGEKLTTNNRMELMAAISALNSI 61
Query: 64 -----KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ +Y+DS YV G + WI+ W++NGWKTS KK V N DLW++
Sbjct: 62 AENTLWKNQHISVYSDSQYVKNGITSWIQNWKKNGWKTSAKKPVLNKDLWVQLDSVYNLL 121
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ W+KGHAG + NE D +
Sbjct: 122 DIEWKWVKGHAGVKYNEICDELCNMEMDK 150
>gi|170745285|ref|YP_001766742.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831]
gi|170658886|gb|ACB27940.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831]
Length = 220
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT-NNRMELMAAIKALTALK 64
+R + Y DG C NPGPGGWGV++ + GGE TT NNRMEL AAIK L
Sbjct: 1 MRTI-VYADGGCDPNPGPGGWGVVIAAPDGTVELCGGEPGTTTNNRMELTAAIKGLEHFP 59
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + DS YV K ++W++ W+ S VKN+DL + E +A V W
Sbjct: 60 AGAAIEMRCDSQYVVKSVTEWMRGWK-ARGWRSTTGDVKNVDLMKRLDELNAARDVKWTW 118
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
++GHAG++ NE+ D + K
Sbjct: 119 VRGHAGDRLNERADALVHRGRREAK 143
>gi|220908688|ref|YP_002483999.1| Ribonuclease H [Cyanothece sp. PCC 7425]
gi|259494077|sp|B8HPS9|RNH_CYAP4 RecName: Full=Ribonuclease H; Short=RNase H
gi|219865299|gb|ACL45638.1| Ribonuclease H [Cyanothece sp. PCC 7425]
Length = 157
Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALK--YP 66
YTDGACSGNPGPGGWGV++ + + G TTNNRME+ AAI AL +
Sbjct: 7 KIYTDGACSGNPGPGGWGVVVYFGDGSVHEMGGAAAATTNNRMEMQAAIAALEFCQAAGH 66
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V+LYTDS YV KG ++W+ W++ GWKT+ K + ++ V+ +++
Sbjct: 67 PPVILYTDSEYVKKGITEWLPGWKRKGWKTAQGKP-VLNQDLWQVLDQLNTKSVNWQYVR 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GH+GN NE+ D IAR A + ++
Sbjct: 126 GHSGNAGNERCDAIARAFAAGRQPEL 151
>gi|148655168|ref|YP_001275373.1| ribonuclease H [Roseiflexus sp. RS-1]
gi|148567278|gb|ABQ89423.1| Ribonuclease H [Roseiflexus sp. RS-1]
Length = 214
Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDGAC GNPGPGGW ++ G+ I G E+ TTNNRMEL AA++AL +
Sbjct: 2 IEIFTDGACRGNPGPGGWAAVIVQNGEVIEIGGAEERTTNNRMELRAAVEALRRVPPNAP 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L TDS Y+ G + W+ W++ W T+++ + ++A A +V +++GH
Sbjct: 62 VRLTTDSEYLLHGATHWLLLWKKRNWLTTEQTP-VEHRDLWEELDALADQRVTWQYVRGH 120
Query: 129 AGNQENEKVDRIARNAAV 146
+G+ NE+ + +A+ A
Sbjct: 121 SGDPWNERANTLAQAYAD 138
>gi|209884679|ref|YP_002288536.1| ribonuclease HI (RNase HI) [Oligotropha carboxidovorans OM5]
gi|209872875|gb|ACI92671.1| ribonuclease HI (RNase HI) [Oligotropha carboxidovorans OM5]
Length = 255
Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 7 REVHAYTDGAC-SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ YTDG+ G G GGW ++R I GG + +T NRME++AA+ AL L
Sbjct: 109 KTAIVYTDGSAERGGKGRGGWAAIIRAGFDIVEIFGGAEASTINRMEIIAAVVALEILPA 168
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L+TDS Y+ G + WI W++NGW T ++ VKN DLW + A H V W+
Sbjct: 169 GCVVKLHTDSKYLRNGITNWIDGWKRNGWLTVAREPVKNEDLWRRLDAARLSHTVTWKWV 228
Query: 126 KGHAGNQENEKVDRIARNA 144
K H G + NE+ D +A+ A
Sbjct: 229 KAHVGIRLNERADELAKFA 247
>gi|229828474|ref|ZP_04454543.1| hypothetical protein GCWU000342_00536 [Shuttleworthia satelles DSM
14600]
gi|229793068|gb|EEP29182.1| hypothetical protein GCWU000342_00536 [Shuttleworthia satelles DSM
14600]
Length = 158
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
V YTDGA GNP GPGG+G ++ Y + K +S G K+TTNNRMELM I+AL
Sbjct: 2 RVTIYTDGAARGNPDGPGGYGAVISYVDARGQEHIKELSCGYKKTTNNRMELMGVIRALE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
ALK PC+V L++DS YV K F + KWQ+NGWKT+ KK VKNIDLW K +E + H+V
Sbjct: 62 ALKCPCQVDLWSDSQYVVKAFEEHWIDKWQKNGWKTAGKKAVKNIDLWKKLLELMSPHQV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+W+KGHAG NE+ D +A +AA
Sbjct: 122 TFHWVKGHAGQTYNERCDFLATSAAD 147
>gi|330813660|ref|YP_004357899.1| homoserine kinase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486755|gb|AEA81160.1| homoserine kinase [Candidatus Pelagibacter sp. IMCC9063]
Length = 141
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ YTDGACSGNPG GGW ++ EK ISG E+ TTNNRMEL A I AL +
Sbjct: 3 KKITIYTDGACSGNPGKGGWAAVIIEDKNEKTISGSEQLTTNNRMELSAVINALREVA-S 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ +YTDS YV G WIK W+ NGW T+ K+ VKN DLW++ ++ + W+K
Sbjct: 62 AELDIYTDSKYVKNGIESWIKNWKINGWMTAAKQPVKNKDLWLELDTLVSEKAIGWKWVK 121
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+ + N VD AR A
Sbjct: 122 GHSNDHYNTIVDEAARKAI 140
>gi|149914792|ref|ZP_01903322.1| ribonuclease H [Roseobacter sp. AzwK-3b]
gi|149811585|gb|EDM71420.1| ribonuclease H [Roseobacter sp. AzwK-3b]
Length = 186
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 93/152 (61%), Gaps = 9/152 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK-----EKIISGGEKETTNNRMELMAAIKALTA 62
+V YTDGAC+GNPGPGGWG +L + I+G + +TT NRME+MAAI+AL
Sbjct: 29 DVVIYTDGACAGNPGPGGWGAILIDQRHGGASKHSEIAGYDIDTTGNRMEMMAAIQALEV 88
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L VL+++D+ YV + ++WIKKW+ NGWK VKNIDLW + EA AQH V
Sbjct: 89 LGRGVNVLIWSDNQYVIRSITRWIKKWKANGWKVKGGAMVKNIDLWQRLDEAQAQHNVRW 148
Query: 123 YWIKGHAGNQENEKVDRIA----RNAAVSFKN 150
W+K H+GN NE D++A A K+
Sbjct: 149 RWVKSHSGNVGNEMADKLACKMRDEAIRKMKS 180
>gi|319778557|ref|YP_004129470.1| Ribonuclease HI [Taylorella equigenitalis MCE9]
gi|317108581|gb|ADU91327.1| Ribonuclease HI [Taylorella equigenitalis MCE9]
Length = 151
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDGAC GNPG GGWG L+ E + G E+ETTNNRMEL A I +L ++
Sbjct: 3 KKIEIWTDGACKGNPGVGGWGALIILDDVEVELKGAEEETTNNRMELTAVIMSLQYIEDN 62
Query: 67 ----CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+++++ DS YV F Q + WQ+ GWKT+ K VKN DLW + ++ +
Sbjct: 63 FEDVDELIIHVDSQYVMNPFVQNWLENWQKQGWKTASKTPVKNKDLWQELIKLVDKLNPK 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W++GH G ENE+ D +A A + N
Sbjct: 123 WNWVRGHCGIAENERADELANLAIKNLNN 151
>gi|311745590|ref|ZP_07719375.1| ribonuclease HI [Algoriphagus sp. PR1]
gi|126578152|gb|EAZ82372.1| ribonuclease HI [Algoriphagus sp. PR1]
Length = 155
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALTALK 64
+ YTDGA GNPGPGG+G +L + K K +S G + TTNNRMEL+A I+AL ALK
Sbjct: 2 ISIYTDGAAKGNPGPGGYGAVLLFNNKGSILRKELSEGYRLTTNNRMELLAVIRALQALK 61
Query: 65 YPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V +Y+DS YV + GW+ K KN DLW++++ ++K
Sbjct: 62 VTGIPVQIYSDSKYVVDAIEKGWLW----GWQKKGFKDKKNPDLWLRYIPLHLKYKPKFI 117
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W+KGHAGN ENE+ D++A AA
Sbjct: 118 WVKGHAGNPENERCDQLAVEAAE 140
>gi|218132500|ref|ZP_03461304.1| hypothetical protein BACPEC_00359 [Bacteroides pectinophilus ATCC
43243]
gi|217992610|gb|EEC58612.1| hypothetical protein BACPEC_00359 [Bacteroides pectinophilus ATCC
43243]
Length = 162
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDGA GNP GPGG+G ++ Y + + S G K+TTNNRMELMAAI L A
Sbjct: 7 VTIYTDGAARGNPDGPGGYGTVIHYVDPKGELHVREFSAGYKKTTNNRMELMAAIAGLEA 66
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKVD 121
L PC V L +DS Y+ F+Q + + VKN+DLW + +EA H V
Sbjct: 67 LTRPCNVNLISDSKYLVDAFNQHWIEGWIKKGWKRGKNEPVKNVDLWKRLLEAMKIHNVT 126
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHAG++ NE+ D +A AA
Sbjct: 127 FTWVKGHAGHEMNERCDELATTAAD 151
>gi|331090860|ref|ZP_08339706.1| ribonuclease H [Lachnospiraceae bacterium 2_1_46FAA]
gi|330399719|gb|EGG79381.1| ribonuclease H [Lachnospiraceae bacterium 2_1_46FAA]
Length = 160
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKA 59
+ +V YTDGA GNP GPGG+G +L Y + K +S G K+TTNNRMELMA I
Sbjct: 1 MMKVKIYTDGAARGNPDGPGGYGTVLEYVDTKGELHTKELSQGYKKTTNNRMELMAVIAG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
AL PC++ LY+DS YV F+Q + VKNIDLW + ++A H
Sbjct: 61 FEALNRPCEIELYSDSKYVVDAFNQKWIDGWIKKRWKRGKNEPVKNIDLWKRLLKAKEPH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V W+KGH G+ +NE+ D +A ++A
Sbjct: 121 QVTFIWVKGHDGHMQNERCDFLATSSAD 148
>gi|297616842|ref|YP_003702001.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
gi|297144679|gb|ADI01436.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
Length = 155
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ K+ R V YTDGACSGNPGPGGWG +L Y+ + K + GG+ ETTN RMEL A I+AL
Sbjct: 3 NQKNKRTVVIYTDGACSGNPGPGGWGAVLLYQDRHKELRGGDPETTNQRMELTAVIEALK 62
Query: 62 A-LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A V +Y+DS+Y+ F+Q +KWQ+NGWK + V N DLW + + S ++K
Sbjct: 63 ALKVEGWDVEVYSDSAYLVNAFNQGWLEKWQRNGWKNAKNDPVANQDLWQELLRLSKKNK 122
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V + I GH+G+ NE+ D +AR A +
Sbjct: 123 VKIIKIAGHSGDFWNERCDALARQAIKEISGR 154
>gi|322378530|ref|ZP_08052978.1| ribonuclease H [Helicobacter suis HS1]
gi|322379757|ref|ZP_08054067.1| ribonuclease H [Helicobacter suis HS5]
gi|321147828|gb|EFX42418.1| ribonuclease H [Helicobacter suis HS5]
gi|321149044|gb|EFX43496.1| ribonuclease H [Helicobacter suis HS1]
Length = 147
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V + DG+ GNPG GG+ +LRY G EKII GGE TTNNRMEL A +AL LK
Sbjct: 1 MKHVELFCDGSALGNPGFGGYCSILRYCGVEKIIQGGELHTTNNRMELRAVNEALKVLKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
CK+ LY+DS+YV G S+W++ W + +KN DLW +F+ A H + +WI
Sbjct: 61 SCKIDLYSDSTYVCYGISEWLQVW-----VNKNFSKIKNADLWKEFLALKANHLITAHWI 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH G+ ENE D++AR A+++K K
Sbjct: 116 KGHNGHTENELCDKLAREQALNYKQK 141
>gi|292670498|ref|ZP_06603924.1| ribonuclease H [Selenomonas noxia ATCC 43541]
gi|292647908|gb|EFF65880.1| ribonuclease H [Selenomonas noxia ATCC 43541]
Length = 223
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+TDG+C NPG PGGW ++ G + SGG ETTNNRMEL AA+ A+T++
Sbjct: 79 IIHTDGSCLRNPGGPGGWAAVIETVATGDVEERSGGAAETTNNRMELTAALTAVTSVPAG 138
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ LYTDS Y+ F+++ W++ GW+ +D + V N DLWM+ A A+ V +W+
Sbjct: 139 ARIALYTDSQYLKNAFTKFWLPAWKKRGWRKADGEPVLNQDLWMQLDAAFAERHVQFHWV 198
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAGN NE+ D +AR A ++
Sbjct: 199 KGHAGNPRNERCDALARAEAEQYRR 223
>gi|313206150|ref|YP_004045327.1| ribonuclease h [Riemerella anatipestifer DSM 15868]
gi|312445466|gb|ADQ81821.1| Ribonuclease H [Riemerella anatipestifer DSM 15868]
gi|315023166|gb|EFT36179.1| Ribonuclease HI [Riemerella anatipestifer RA-YM]
gi|325336404|gb|ADZ12678.1| Ribonuclease HI [Riemerella anatipestifer RA-GD]
Length = 159
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYK--GKEKIISGGEKETTNNRMELMAAI-KALTALK 64
++ YTDGACSGNPG GG+G+++R EK S G ++TTNNRMEL+A I
Sbjct: 2 KIDIYTDGACSGNPGKGGYGIIMRVSGLNYEKAFSQGFRKTTNNRMELLAVIVALEKLKN 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+V +YTDS YV +Q K DLW + V H +W
Sbjct: 62 NENEVHIYTDSKYVADAINQKWLYGWIKKGFNKVKNP----DLWQRLVPLMRMHNPTFHW 117
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
IKGH G+ +NE+ D++A AA + K +I
Sbjct: 118 IKGHNGHPDNERCDKLAVAAANASKLEI 145
>gi|319948927|ref|ZP_08023034.1| RNase HI [Dietzia cinnamea P4]
gi|319437407|gb|EFV92420.1| RNase HI [Dietzia cinnamea P4]
Length = 335
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-P 66
+ A DG+ GNPGP GW + GG K TNN+ EL A + L +
Sbjct: 2 TIIAAADGSALGNPGPAGWAWYIDD---STWRCGGWKRGTNNQGELTAVLDLLRQTAHSD 58
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS YV ++W+K W++ GWK +D K V N+++ EA +V W+K
Sbjct: 59 EPLHILCDSQYVINSVTKWMKGWKRKGWKKADGKPVLNVEVMKALDEAMQGREVTFEWVK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG++ NEK D +A AA + ++
Sbjct: 119 GHAGHELNEKADALANGAAKAHSSR 143
>gi|94264759|ref|ZP_01288538.1| Ribonuclease H [delta proteobacterium MLMS-1]
gi|93454805|gb|EAT05058.1| Ribonuclease H [delta proteobacterium MLMS-1]
Length = 243
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-KALTALKYP 66
EV YTDG GNPGPGG+GV+ Y G+ + ++GG + TTNNRMEL+A I
Sbjct: 90 EVLIYTDGGALGNPGPGGYGVVQLYDGQRRELAGGFRLTTNNRMELLACIVALRELPIRD 149
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LY+DSSYV G S+ W++ W+ SD K N+DLW + + + V L+W+
Sbjct: 150 RPVRLYSDSSYVVNGISKGWAANWRRRDWRKSDGKPALNVDLWRQLLSQVEELPVSLHWV 209
Query: 126 KGHAGNQENEKVDRIAR 142
+GH GN NE+ D + R
Sbjct: 210 RGHTGNPLNERCDELVR 226
>gi|94263760|ref|ZP_01287567.1| Ribonuclease H [delta proteobacterium MLMS-1]
gi|93455860|gb|EAT06023.1| Ribonuclease H [delta proteobacterium MLMS-1]
Length = 243
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-KALTALKYP 66
EV YTDG GNPGPGG+GV+ Y G+ + ++GG + TTNNRMEL+A I
Sbjct: 90 EVLIYTDGGALGNPGPGGYGVVQLYDGQRRELAGGFRLTTNNRMELLACIVALRELPIRD 149
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LY+DSSYV G S+ W++ W+ SD K N+DLW + + + V L+W+
Sbjct: 150 RPVRLYSDSSYVVNGISKGWAANWRRRDWRKSDGKPAINVDLWRQLLSQVEELPVSLHWV 209
Query: 126 KGHAGNQENEKVDRIAR 142
+GH GN NE+ D + R
Sbjct: 210 RGHTGNPLNERCDELVR 226
>gi|302338837|ref|YP_003804043.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293]
gi|301636022|gb|ADK81449.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293]
Length = 153
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--- 63
+ V YTDG C GNPGPGGW ++ G E TTNNRMEL A I AL +
Sbjct: 6 KAVIVYTDGGCHGNPGPGGWACIILSSDNRIEKRGFEAATTNNRMELTAVITALETILSS 65
Query: 64 --KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V ++TDS YV G + WI W + GWKT+ VKN +LW + + V
Sbjct: 66 TSLQKSSVEVHTDSQYVRNGITSWISGWIKKGWKTASGSAVKNRELWERLKQLDDGLTVT 125
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W++GH GN+ NE D + + A K
Sbjct: 126 WRWVRGHDGNELNEACDALVQQAIREGK 153
>gi|115376306|ref|ZP_01463545.1| RNase H [Stigmatella aurantiaca DW4/3-1]
gi|310817978|ref|YP_003950336.1| ribonuclease h [Stigmatella aurantiaca DW4/3-1]
gi|115366656|gb|EAU65652.1| RNase H [Stigmatella aurantiaca DW4/3-1]
gi|309391050|gb|ADO68509.1| Ribonuclease H [Stigmatella aurantiaca DW4/3-1]
Length = 155
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/134 (50%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLR---YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
VH Y DGACS NPG GGWG +L + K +SG E TTNNRMEL AA+ AL ALK
Sbjct: 6 VHIYCDGACSPNPGIGGWGSILVSPAHGHARKELSGAEPGTTNNRMELTAALMALRALKS 65
Query: 66 PCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
PC+V L+TDS YV F + KWQ+ GWKT+ ++ V+N DLW +E + H+V W
Sbjct: 66 PCQVQLFTDSQYVRNAFQEKWLDKWQRTGWKTAGRQPVQNADLWQALLEQTRVHQVSWNW 125
Query: 125 IKGHAGNQENEKVD 138
++GH+G+ ENE+ D
Sbjct: 126 VRGHSGHVENERAD 139
>gi|283457334|ref|YP_003361909.1| ribonuclease HI [Rothia mucilaginosa DY-18]
gi|283133324|dbj|BAI64089.1| ribonuclease HI [Rothia mucilaginosa DY-18]
Length = 472
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S +E+ A DG+ GNPGP GW + SGG TNN EL A +
Sbjct: 1 MNST--QEIIAAADGSALGNPGPAGWAWYIDDDH---WASGGWAHGTNNMGELKAVLDLF 55
Query: 61 TAL--KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + K+ +Y DS YV ++W+ W++ GWK SD K V N DL +
Sbjct: 56 EATASRPEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQVLTGR 115
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ W+KGHAG++ NEK D +A AA +++
Sbjct: 116 DYEFIWVKGHAGHELNEKADSLANGAARAYQE 147
>gi|254797020|ref|YP_003081857.1| RNase H [Neorickettsia risticii str. Illinois]
gi|254590252|gb|ACT69614.1| RNase H [Neorickettsia risticii str. Illinois]
Length = 151
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ E YTDGAC GNPGPGGW ++ EKIISG E ++TNNRMEL+A IKAL + +
Sbjct: 1 MEECVIYTDGACLGNPGPGGWAAVIIQRGADEKIISGREADSTNNRMELLAVIKALESFE 60
Query: 65 YPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+V +YTDS+YVH+G + WIK W +N W+ S VKN ++W++ +A+H V
Sbjct: 61 QKGKRVTVYTDSTYVHRGITVWIKSWMKNKWRNSSGAAVKNKEMWVRLHAIAAEHTVRWL 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W+K H G+ NE VD++AR A SF
Sbjct: 121 WVKAHNGDHYNEIVDKVARKEAASF 145
>gi|258450499|gb|ACV72179.1| ribonuclease H [uncultured organism]
Length = 152
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-ALKYPC 67
+ +TDG+ GNPGPGG+GV+LRYK K +S G ++TTNNRMEL+A I L +
Sbjct: 2 IELFTDGSSRGNPGPGGYGVVLRYKHHVKEMSQGFRKTTNNRMELLAVIVGLEAIKQKDI 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +Y+DS YV + Q + DLW +F++ KV WIKG
Sbjct: 62 PVTVYSDSKYVVDAVEKKWVYGWQKKGFSGKANP----DLWQRFLKVYDPLKVKFVWIKG 117
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
HAG+ ENE+ D + +A+S +I
Sbjct: 118 HAGHPENERCDVLLVESAMSPTGQI 142
>gi|88608239|ref|YP_506545.1| ribonuclease HI [Neorickettsia sennetsu str. Miyayama]
gi|123763707|sp|Q2GDA1|RNH_NEOSM RecName: Full=Ribonuclease H; Short=RNase H
gi|88600408|gb|ABD45876.1| ribonuclease HI [Neorickettsia sennetsu str. Miyayama]
Length = 151
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ E YTDGAC GNPGPGGW ++ EKIISG E ++TNN+MEL+A IKAL + +
Sbjct: 1 MEEYVIYTDGACLGNPGPGGWAAVIIQRGTNEKIISGREADSTNNKMELLAVIKALESFE 60
Query: 65 YPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+V +YTDS+YV+KG + WI+ W +N W+ S VKN ++W++ +A H V
Sbjct: 61 QKGKRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWL 120
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
W+K H G+ NE VDR+AR A SF N
Sbjct: 121 WVKAHNGDHYNEIVDRVARKEAASFTN 147
>gi|297570601|ref|YP_003691945.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
gi|296926516|gb|ADH87326.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
Length = 247
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-KALTALKYPC 67
V YTDG GNPGPGG+GV+ Y G+ + ++GG + TTNNRMELMA I
Sbjct: 91 VTIYTDGGVQGNPGPGGYGVVQLYNGESRELAGGFRLTTNNRMELMACIVALSELEHRDK 150
Query: 68 KVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V LY+DSSYV G ++ W++ GW+ SD + N DLW + ++ A+ +V+ YW++
Sbjct: 151 PVRLYSDSSYVVNGINKGWAVNWRRRGWRKSDGQPALNRDLWGQLLDLLAERQVEFYWVR 210
Query: 127 GHAGNQENEKVDRIARNAAV 146
GHAGN NE+ D++A +A
Sbjct: 211 GHAGNHFNERCDQLAVASAR 230
>gi|313677803|ref|YP_004055799.1| RNAse hi [Marivirga tractuosa DSM 4126]
gi|312944501|gb|ADR23691.1| RNase HI [Marivirga tractuosa DSM 4126]
Length = 157
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-KALTALKYPC 67
+ YTDG+ GNPGPGG+G+++R+ K K IS G ++TTNNRMEL+A I +
Sbjct: 2 ITIYTDGSALGNPGPGGYGIVMRFGDKAKEISAGYRKTTNNRMELLAIIVALKSLKTNKH 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +Y+DS YV ++ GW K KNIDLW +++E S + + +W+KG
Sbjct: 62 PVHIYSDSKYVIDSITKGWL----AGWVKKGFKGKKNIDLWKQYLEVSKGYDLHFHWVKG 117
Query: 128 HAGNQENEKVDRIARNAAVS 147
HAGN +NE+ DR+A A +
Sbjct: 118 HAGNADNERCDRLAVAKAEN 137
>gi|255326656|ref|ZP_05367732.1| ribonuclease H [Rothia mucilaginosa ATCC 25296]
gi|255295873|gb|EET75214.1| ribonuclease H [Rothia mucilaginosa ATCC 25296]
Length = 475
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+S +E+ A DG+ GNPGP GW + SGG TNN EL A +
Sbjct: 1 MNST--QEIIAAADGSALGNPGPAGWAWYIDDDH---WASGGWAHGTNNMGELKAVLDLF 55
Query: 61 TAL--KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + K+ +Y DS YV ++W+ W++ GWK SD K V N DL +A
Sbjct: 56 EATASRPEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQALTGR 115
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ W+KGHAG++ NEK D +A AA +++
Sbjct: 116 DYEFIWVKGHAGHELNEKADSLANGAARAYQE 147
>gi|158522739|ref|YP_001530609.1| ribonuclease H [Desulfococcus oleovorans Hxd3]
gi|158511565|gb|ABW68532.1| Ribonuclease H [Desulfococcus oleovorans Hxd3]
Length = 192
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KAL 60
+ YTDG+ GNPGPGG+GV+++ K ISGG K TTNNRMELMA I
Sbjct: 36 PVPKNAIIVYTDGSAIGNPGPGGYGVVIKGG---KEISGGYKLTTNNRMELMAVIVALRE 92
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+++Y+DS YV ++ + T N DLW KF+ ++ V
Sbjct: 93 LQDDDERPIVIYSDSKYVVDSINKGWVLGWKENKWAVTNGTRVNSDLWKKFLRLRSKVDV 152
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W+KGHA + N K D++A +AA +
Sbjct: 153 EFRWVKGHATDPLNIKADQLANSAARQKR 181
>gi|153837019|ref|ZP_01989686.1| RNase H [Vibrio parahaemolyticus AQ3810]
gi|149749792|gb|EDM60537.1| RNase H [Vibrio parahaemolyticus AQ3810]
Length = 140
Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 70/126 (55%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 4 KHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
K++ + V +TDG+C GNPGPGG+G++LRYK EK +S G TTNNRME++AA+ AL
Sbjct: 15 KNMTKHVEIFTDGSCLGNPGPGGYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQT 74
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK PC+V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+VD
Sbjct: 75 LKEPCRVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVDW 134
Query: 123 YWIKGH 128
+W+KGH
Sbjct: 135 HWVKGH 140
>gi|304437505|ref|ZP_07397463.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369555|gb|EFM23222.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 217
Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+TDG+C NPG GGW ++ + SGG+ ETTNNRMEL AA+ AL+A+
Sbjct: 75 IIHTDGSCLRNPGGAGGWAAVIETAATGAVEEKSGGDPETTNNRMELTAALMALSAVPEG 134
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V LYTDS Y+ F+++ W++ GWK +D + V N DLW++ A A +V +W+
Sbjct: 135 ARVALYTDSQYLKNAFTKFWLPAWKKRGWKKADGEPVLNQDLWVQLDAAFAARQVQFHWV 194
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGHAGN NE+ D +AR A F
Sbjct: 195 KGHAGNPRNERCDALARAEAERF 217
>gi|124267713|ref|YP_001021717.1| RNase HI [Methylibium petroleiphilum PM1]
gi|124260488|gb|ABM95482.1| RNase HI [Methylibium petroleiphilum PM1]
Length = 150
Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 6 LREVHAYTDGACSG-NPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA 62
++ + AYTDGAC+ NPGP WG +L E G TN EL AAI+ LT
Sbjct: 1 MKWI-AYTDGACAPSNPGPAAWGAVLIAPDGRTETDHFGFIGHGTNQIAELTAAIEGLTR 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ V L +DS YV KG S+W W++ G++ S + V N+ LW + + KV
Sbjct: 60 VPAGALVELVSDSQYVLKGLSEWRAGWERKGYRNSKGEPVANLGLWKQLFALADARKVST 119
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
W++GH G+ NE+ D +A A
Sbjct: 120 RWVRGHNGDPLNERADALANKA 141
>gi|297625902|ref|YP_003687665.1| ribonuclease H [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921667|emb|CBL56224.1| Ribonuclease H [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 343
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ A DG+ NPGP GW + K+ GG TNNR ELMA ++ TA
Sbjct: 2 IVAAADGSSLNNPGPAGWAWFI---DKDNWACGGWPHGTNNRGELMALLQLLTATAGAPD 58
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS YV ++W+ W++ GW +DKK V+N++L +A V W+K
Sbjct: 59 EPLKVLCDSQYVINSVTKWMAGWKRRGWVKADKKPVQNVELLKAIDQAITGRTVSFEWVK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GHAG+ NE D +A AA +++
Sbjct: 119 GHAGHPLNEAADTLAHGAATAYQ 141
>gi|296124367|ref|YP_003632145.1| ribonuclease H [Planctomyces limnophilus DSM 3776]
gi|296016707|gb|ADG69946.1| ribonuclease H [Planctomyces limnophilus DSM 3776]
Length = 176
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 5/137 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGACSGNPGPGGWG +LR+ KEK SGG ETTNN+MEL A I+ L ALK
Sbjct: 26 VQLFTDGACSGNPGPGGWGYILRHPASGKEKEASGGLAETTNNQMELQAVIEGLKALKSR 85
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS---DKKTVKNIDLWMKFVEASAQHKVDLY 123
+V + TDSSYV KG +W+ W++NGW+ K VKN++ W + A+H+V
Sbjct: 86 SRVEVVTDSSYVAKGSCEWLPGWKRNGWQRKEGKSFKPVKNVEYWQALDQLLARHQVQFK 145
Query: 124 WIKGHAGNQENEKVDRI 140
IKGHAG+ ENE+ D +
Sbjct: 146 LIKGHAGHAENERCDVL 162
>gi|170078313|ref|YP_001734951.1| ribonuclease H [Synechococcus sp. PCC 7002]
gi|169885982|gb|ACA99695.1| ribonuclease H [Synechococcus sp. PCC 7002]
Length = 293
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAI---KALTALKYP 66
YTDG C NPGPGGWGV++++ + G + ETTNNRME+ AAI + + P
Sbjct: 10 IYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQALEFVRDCPQP 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V L+TDS YV G ++WIK WQ+ GWKT+ + + Q + +K
Sbjct: 70 EPVRLFTDSKYVIDGITKWIKGWQKKGWKTATGNP-VLNQDLWQQLNQLNQPTISWCHVK 128
Query: 127 GHAGNQENEKVDRIARNAAV 146
GH+G NE+ D IA A
Sbjct: 129 GHSGEAGNERADAIANGFAR 148
>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter sp. FRC-32]
gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter sp. FRC-32]
Length = 480
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y+DG+ + G GG+GV+LRY EK +SG E TT+ RMEL+AAI+ L AL P K
Sbjct: 292 VELYSDGSGR-DSGLGGYGVILRYGDHEKELSGFEAATTSQRMELIAAIRGLEALHSPRK 350
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L++DS Y+ +G ++W++ W + G +KN DLW + S +H+V W+ GH
Sbjct: 351 VHLFSDSQYLVRGMNEWLQGWIRTGRL-ETPDALKNQDLWQQLALLSGKHQVTCEWLPGH 409
Query: 129 AGNQENEKVDRIARNAA 145
AG+ NE+ D++A+ AA
Sbjct: 410 AGHPFNERCDKLAKRAA 426
>gi|218531996|ref|YP_002422812.1| ribonuclease H [Methylobacterium chloromethanicum CM4]
gi|218524299|gb|ACK84884.1| Ribonuclease H [Methylobacterium chloromethanicum CM4]
Length = 153
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIK 58
M + RE+ DGAC GNPGPGG+G +L EKI+ G E TTNNRMEL AAI
Sbjct: 1 MSEEPTREITIAFDGACRGNPGPGGYGAILINTRTGAEKIVKGREVATTNNRMELSAAIA 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L A++ V + DS YV KG ++W+ W+ GW + K V N +LW A A+H
Sbjct: 61 GLNAIRPGAIVAMIGDSQYVIKGITEWLPGWKARGWSGAGGKPVLNKELWQSLEMAVARH 120
Query: 119 -KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V W++GHAG++ NE+VD IA AA +
Sbjct: 121 LTVTWTWVRGHAGHELNERVDEIA--AAQA 148
>gi|315655565|ref|ZP_07908464.1| ribonuclease H [Mobiluncus curtisii ATCC 51333]
gi|315490220|gb|EFU79846.1| ribonuclease H [Mobiluncus curtisii ATCC 51333]
Length = 198
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+++ E+ DG+ GNPGP GW + +GG +TNNR ELMA + L
Sbjct: 2 ENM-EITVAADGSALGNPGPAGWAWYVDENC---WSAGGWTMSTNNRGELMAVLDFLEET 57
Query: 64 K--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ DS YV ++W+ W++ GW+ +D K V N DL + + VD
Sbjct: 58 SSIPNLTIHFLCDSQYVINSVTKWMPGWKRRGWRKADGKAVLNDDLMKRLDAELSGRAVD 117
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ NEKVD++AR AA +++
Sbjct: 118 FRWVKGHAGHTLNEKVDQLARGAATAYQ 145
>gi|163754626|ref|ZP_02161748.1| ribonuclease HI [Kordia algicida OT-1]
gi|161325567|gb|EDP96894.1| ribonuclease HI [Kordia algicida OT-1]
Length = 158
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAI-KALTA 62
+ +VH YTDG+ GNPGPGG+G+++ + K K S G ++TTNNRMEL+A I
Sbjct: 1 MVDVHIYTDGSSRGNPGPGGYGIVMEWVGKPYHKEFSEGYRKTTNNRMELLAVIVALEKL 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ ++TDS YV + GW+ KN DLWM+F++ +H V
Sbjct: 61 KFMHTEAKVFTDSKYVVDSVEKKWVF----GWEKKGFSGKKNADLWMRFLKIYRKHIVHF 116
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
WIKGH + +NE+ D +A A+ K KI
Sbjct: 117 QWIKGHNNHPQNERCDFLAVEASKKEKLKI 146
>gi|262276818|ref|ZP_06054611.1| ribonuclease HI [alpha proteobacterium HIMB114]
gi|262223921|gb|EEY74380.1| ribonuclease HI [alpha proteobacterium HIMB114]
Length = 139
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGACSGNPG GGW ++ K + ISG + TTNNRMEL A I AL +K
Sbjct: 2 IKIYTDGACSGNPGRGGWAAIILDGEKIEKISGSKDNTTNNRMELTAVISALKYVKGK-D 60
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ +YTDS Y G +WI W++NGWKT++K+ VKN DLW + + +++ V W+KGH
Sbjct: 61 LEIYTDSKYTKDGIEKWISNWKKNGWKTANKQDVKNKDLWDELDQLNSEKNVQWNWVKGH 120
Query: 129 AGNQENEKVDRIARNAAVS 147
A NQ N D +AR+ +
Sbjct: 121 ANNQYNNMADELARSEVEN 139
>gi|81300992|ref|YP_401200.1| RNase HI [Synechococcus elongatus PCC 7942]
gi|81169873|gb|ABB58213.1| RNase HI [Synechococcus elongatus PCC 7942]
Length = 259
Score = 106 bits (265), Expect = 7e-22, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTDGAC+GNPGPGGWGV +++ G + + G + TTNNRMEL AAI AL +
Sbjct: 6 LRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALEFWRDHS 65
Query: 68 ---KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V LYTDS YV KG +QW+K WQ+ GWKT+ K V ++ V +
Sbjct: 66 DQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPV-LNQDLWMHLDDLNSPAVQWQY 124
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
++GH+G+ NE+ D+IAR+ A
Sbjct: 125 VRGHSGDPGNERCDQIARSFAQQ 147
>gi|254468987|ref|ZP_05082393.1| RNase H [beta proteobacterium KB13]
gi|207087797|gb|EDZ65080.1| RNase H [beta proteobacterium KB13]
Length = 149
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKYP-- 66
YTDG+C GNPGPGGW ++ + K SG ++TTNN+MEL AAI+ L
Sbjct: 4 KIYTDGSCHGNPGPGGWAFIVVANDEVVKEKSGSMEKTTNNQMELSAAIQGLFYFNEHVE 63
Query: 67 -CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V L+TDS YV G + WI W++N W+TS KK VKN +LW E +++ V+ W+
Sbjct: 64 SKEVELFTDSKYVIDGINSWIHGWKKNNWRTSTKKPVKNEELWRTLDELNSKLTVNWIWV 123
Query: 126 KGHAGNQENEKVDRIARNA 144
KGH+G+ N+KVD +A A
Sbjct: 124 KGHSGDIFNDKVDLLANYA 142
>gi|118475046|ref|YP_892861.1| ribonuclease H [Campylobacter fetus subsp. fetus 82-40]
gi|118414272|gb|ABK82692.1| RNase H [Campylobacter fetus subsp. fetus 82-40]
Length = 141
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+C NPG GGW +L Y+G +K SGG TTNN+ME+ A I+ L ALK
Sbjct: 1 MKKICLFSDGSCLNNPGAGGWAYILEYEGYKKFSSGGAAYTTNNKMEIQAVIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDSSYV + W+ W + +K + L + + HKV W+
Sbjct: 61 PCEVSLYTDSSYVANAINIWLDSWIKKKFKNVKNVELWQELLELLNI-----HKVSANWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
K H G+ +NE+ D++ARN A+ +N
Sbjct: 116 KAHNGHPQNEECDKLARNQAIKAQN 140
>gi|298347023|ref|YP_003719710.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063]
gi|304389270|ref|ZP_07371235.1| ribonuclease HI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315656522|ref|ZP_07909409.1| ribonuclease H [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|298237084|gb|ADI68216.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063]
gi|304327388|gb|EFL94621.1| ribonuclease HI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315492477|gb|EFU82081.1| ribonuclease H [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 198
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA--LT 61
+++ E+ DG+ GNPGP GW + +GG ++TNNR ELMA + T
Sbjct: 2 ENM-EITVAADGSALGNPGPAGWAWYVDENC---WSAGGWTKSTNNRGELMAVVDFLEKT 57
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + DS YV ++W+ W++ GW+ +D K V N DL + + VD
Sbjct: 58 SDIPNLTIHFLCDSQYVINSVTKWMPGWKRRGWRKADGKAVLNDDLMKRLDAELSGRAVD 117
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ NEKVD++AR AA +++
Sbjct: 118 FRWVKGHAGHTLNEKVDKLARGAATAYQ 145
>gi|126662614|ref|ZP_01733613.1| ribonuclease HI [Flavobacteria bacterium BAL38]
gi|126625993|gb|EAZ96682.1| ribonuclease HI [Flavobacteria bacterium BAL38]
Length = 159
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
EVH YTDGA GNPGP G+GV++ +K G + +TNNRMEL+A I L
Sbjct: 4 EVHIYTDGAAKGNPGPAGYGVVMEMVGTPYKKEFYEGFRLSTNNRMELLAVIVGLEKLKN 63
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KVL+ +DS YV + + + K DLWM+F++ QH+VD W
Sbjct: 64 PKTKVLVVSDSKYVVDSVEKRWVFQWEKINFKAKKNP----DLWMRFLKIYRQHQVDFQW 119
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+KGH + +NE+ D +A A+ K I
Sbjct: 120 VKGHNSHPQNERCDELAVMASQQEKLSI 147
>gi|255019825|ref|ZP_05291901.1| Ribonuclease HI [Acidithiobacillus caldus ATCC 51756]
gi|254970754|gb|EET28240.1| Ribonuclease HI [Acidithiobacillus caldus ATCC 51756]
Length = 160
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 90/138 (65%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L +V ++DGAC GNPG G WGV LR G+E+++ G ETTNNRME+ A ++ L
Sbjct: 2 PEALAQVELFSDGACRGNPGRGAWGVCLRAAGRERVLWGYVPETTNNRMEMTAVLRGLQV 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L+ P +V + TDS Y+ G +QW+ W + GW+++ VKN DLW EA+A H++
Sbjct: 62 LRRPSRVQIVTDSRYLVDGMTQWLPGWLRRGWRSAAGAAVKNRDLWQALQEAAAGHELHW 121
Query: 123 YWIKGHAGNQENEKVDRI 140
W++GHAG+ ENE VD +
Sbjct: 122 QWVRGHAGHPENEAVDAL 139
>gi|226355617|ref|YP_002785357.1| ribonuclease H [Deinococcus deserti VCD115]
gi|226317607|gb|ACO45603.1| putative ribonuclease H [Deinococcus deserti VCD115]
Length = 183
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
EV Y+DGAC G GGW +L+Y+G+E ++SG E+ TTNNRMEL ++ L LK PC
Sbjct: 39 EVELYSDGACDTTQGHGGWATILKYRGQELVLSGNEEATTNNRMELRGLLEGLKVLKRPC 98
Query: 68 KVLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V + TDS Y+ K F+ KWQ+NGWKT+ VKN +LW + + + H + W+K
Sbjct: 99 QVRVVTDSQYLRKAFTDGWILKWQRNGWKTAGGDPVKNRELWEELIAQARTHALTFIWVK 158
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GHAG+ ENE+VD +A + +
Sbjct: 159 GHAGHGENERVDVLAVQERTKLRAR 183
>gi|261885508|ref|ZP_06009547.1| ribonuclease H [Campylobacter fetus subsp. venerealis str. Azul-94]
Length = 141
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++++ ++DG+C NPG GGW +L Y+G +K SGG TTNN+ME+ A I+ L ALK
Sbjct: 1 MKKICLFSDGSCLNNPGAGGWAYILEYEGYKKSSSGGAAYTTNNKMEIQAVIEGLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V LYTDSSYV + W+ W + +K + L + + HKV W+
Sbjct: 61 PCEVSLYTDSSYVANAINIWLDSWIKKKFKNVKNVELWQELLELLNI-----HKVSANWV 115
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
K H G+ +NE+ D++ARN A+ +N
Sbjct: 116 KAHNGHPQNEECDKLARNQAIKAQN 140
>gi|320095233|ref|ZP_08026933.1| ribonuclease HI [Actinomyces sp. oral taxon 178 str. F0338]
gi|319977837|gb|EFW09480.1| ribonuclease HI [Actinomyces sp. oral taxon 178 str. F0338]
Length = 495
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ DG+ GNPGP GW ++ R G L A A
Sbjct: 74 TITVAVDGSSLGNPGPAGWAWVVDRDCWDAGGWPEGTNNIGELTALLEALEATAAAGLSD 133
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS Y S+W W++ GW +DKK +KN+ L + A V W+K
Sbjct: 134 QGLHVLADSQYAINVASKWRIGWKKRGWTKADKKPIKNLALIQRIDRAMEGRTVTFEWVK 193
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GHAG+ NE D +AR A +++
Sbjct: 194 GHAGHPLNELADDLARACAQTYQE 217
>gi|119512887|ref|ZP_01631952.1| ribonuclease H [Nodularia spumigena CCY9414]
gi|119462469|gb|EAW43441.1| ribonuclease H [Nodularia spumigena CCY9414]
Length = 312
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 4 KHLREVH-AYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALT 61
+ R++ YTDGAC+GNPGPGGWGV+ + GK + TTNN+ME+ AAI AL
Sbjct: 2 SNQRKIQSIYTDGACTGNPGPGGWGVVAYFSDGKIHEMGDAASYTTNNKMEMQAAIAALN 61
Query: 62 ALK---YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ LYTDS Y+ ++W+ W++ GWK +D K V+N +L +
Sbjct: 62 FFHASGQAEPITLYTDSEYLINCVTKWLPGWKKRGWKKADGKPVQNQELLELL-DQLNTR 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+V+ ++GH+GN NE+ D IAR+ A +
Sbjct: 121 QVNWQHVRGHSGNIGNERCDVIARSFASGQIPSL 154
>gi|146309277|ref|YP_001189742.1| ribonuclease H [Pseudomonas mendocina ymp]
gi|145577478|gb|ABP87010.1| Ribonuclease H [Pseudomonas mendocina ymp]
Length = 162
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 6 LREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKI----ISGGEKETTNNRMELMAAIK 58
+ YTDGAC+ N GWG L + + E++ TNNR EL+AA++
Sbjct: 1 MTGYTIYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVE 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL P + LY+DS + KG ++W+ W+ WK SDKK V + DLW + + +
Sbjct: 61 ALRRCTKPGPITLYSDSQLLVKGANEWLPGWKAKDWKKSDKKPVDHRDLWEQIDQFLQER 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V L W++GHAG+ NE D +A A +
Sbjct: 121 DVTLIWVEGHAGHPGNEVADALADLGASGKR 151
>gi|315605382|ref|ZP_07880425.1| ribonuclease H [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312951|gb|EFU61025.1| ribonuclease H [Actinomyces sp. oral taxon 180 str. F0310]
Length = 355
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + ++ +GG + TNN EL A ++ L A
Sbjct: 2 TITAAADGSSLGNPGPAGWAWYV---DEDTWDAGGWPQGTNNLGELTAILRLLEATAETG 58
Query: 68 K-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + DS Y S+W W++ GW +DKK +KN++L + A +V W+K
Sbjct: 59 EELHILADSQYAINVVSKWRLGWKKRGWTKADKKPIKNLELIQEIDRAMEGRRVTFEWVK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GHAG++ NE+ D +AR+ A +++
Sbjct: 119 GHAGHRMNERADDLARSCAEAYQ 141
>gi|154508370|ref|ZP_02044012.1| hypothetical protein ACTODO_00867 [Actinomyces odontolyticus ATCC
17982]
gi|153798004|gb|EDN80424.1| hypothetical protein ACTODO_00867 [Actinomyces odontolyticus ATCC
17982]
Length = 355
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + ++ +GG + TNN EL A ++ L A
Sbjct: 2 TITAAADGSSLGNPGPAGWAWYV---DEDTWDAGGWPQGTNNLGELTAILRLLEATAETG 58
Query: 68 K-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + DS Y S+W W++ GW +DKK +KN++L + A +V W+K
Sbjct: 59 EELHILADSQYAINVVSKWRLGWKKRGWTKADKKPIKNLELIQEIDRAMEGRRVTFEWVK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GHAG++ NE+ D +AR+ A +++
Sbjct: 119 GHAGHRMNERADDLARSCAEAYQ 141
>gi|320530065|ref|ZP_08031135.1| ribonuclease HI [Selenomonas artemidis F0399]
gi|320137498|gb|EFW29410.1| ribonuclease HI [Selenomonas artemidis F0399]
Length = 223
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+TDG+C NPG GGW ++ + SGG+ ETTNNRMEL AA+KA++A+
Sbjct: 78 IIHTDGSCLRNPGGAGGWAAVIETAATGAVEEKSGGDPETTNNRMELTAALKAVSAVPAG 137
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+++LYTDS Y+ F+++ W++ GWK +D V N DLWM+ A A V W+
Sbjct: 138 SRIVLYTDSQYLKNAFTKFWLPAWKKRGWKKADGAPVLNQDLWMQLDAAFAARHVRFRWV 197
Query: 126 KGHAGNQENEKVDRIAR-NAAVSFK 149
KGHAGN NE+ D +AR A + K
Sbjct: 198 KGHAGNPRNERCDELARTEAMRAAK 222
>gi|134296189|ref|YP_001119924.1| ribonuclease H [Burkholderia vietnamiensis G4]
gi|134139346|gb|ABO55089.1| ribonuclease H [Burkholderia vietnamiensis G4]
Length = 177
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL----K 64
V A+TDGACSGNPGPGGWG + + G+E GG TTNN MEL + L +
Sbjct: 13 VEAWTDGACSGNPGPGGWGAITQVGGREARFFGGMNPTTNNVMELFGVLFVLESTLGRLP 72
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----- 119
+ + TDS YV KG ++W+ W++ GW+ +D K V N + W + A H+
Sbjct: 73 PGSTLSVRTDSQYVQKGVTEWLAGWKRKGWRKADGKLVLNAEWWQRTDAALIAHRAAGNT 132
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V++ W++GHAG++ NE+ D +AR
Sbjct: 133 VNVLWVRGHAGDELNERADALARRG 157
>gi|84496895|ref|ZP_00995749.1| ribonuclease H [Janibacter sp. HTCC2649]
gi|84383663|gb|EAP99544.1| ribonuclease H [Janibacter sp. HTCC2649]
Length = 302
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-KYP 66
+ A DG+ GNPGP GWG + ++ GG TNN EL A + L
Sbjct: 2 TIIAAADGSALGNPGPAGWGWYV---DEDHWACGGWPHGTNNMGELTAVLDLLEQTADVD 58
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWI 125
++++Y DS Y +QW+ W++ GWK D K V N+++ A A K V WI
Sbjct: 59 DELVIYCDSKYTINSITQWMPGWKRKGWKKGDGKPVMNVEIMQALDRAMAGRKNVRFEWI 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGH+G+ NE+ DR+A AA +++
Sbjct: 119 KGHSGHALNEEADRLANGAATAYQK 143
>gi|22297843|ref|NP_681090.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
gi|81844990|sp|Q8DM24|RNH_THEEB RecName: Full=Ribonuclease H; Short=RNase H
gi|22294020|dbj|BAC07852.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
Length = 159
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 6 LREVH-AYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ + YTDGAC GNPGPGGWGV++ + G + G TTNNRMEL AAI+AL A
Sbjct: 1 MTHIRAIYTDGACEGNPGPGGWGVVIYFTDGSVHELGGHHPATTNNRMELQAAIEALKAW 60
Query: 64 KY---PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + LYTDS YV +G ++WI W++ GWKT+ KK V N DLW + + V
Sbjct: 61 RQLAPGSAIALYTDSEYVLRGITEWIHHWKRRGWKTAAKKPVLNQDLWQELDALNDPL-V 119
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
+ ++GH G+ NE+ D IAR
Sbjct: 120 QWHHVRGHRGDVGNERCDLIARR 142
>gi|293193550|ref|ZP_06609820.1| ribonuclease H [Actinomyces odontolyticus F0309]
gi|292819906|gb|EFF78908.1| ribonuclease H [Actinomyces odontolyticus F0309]
Length = 355
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + ++ +GG + TNN EL A ++ L A
Sbjct: 2 TITAAADGSSLGNPGPAGWAWYV---DEDTWDAGGWPQGTNNLGELTAILRLLEATAETG 58
Query: 68 K-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + DS Y S+W W++ GW +DKK +KN++L + A +V W+K
Sbjct: 59 EELHILADSQYAINVVSKWRLGWKKRGWTKADKKPIKNLELIQEIDRAMEGRRVTFEWVK 118
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
GHAG++ NE+ D +AR A +++
Sbjct: 119 GHAGHRMNERADDLARACAEAYQ 141
>gi|308095435|ref|ZP_05905828.2| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
gi|308088289|gb|EFO37984.1| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
Length = 156
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 68/121 (56%), Positives = 90/121 (74%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V +TDG+C GNPGPGG+G++LRYK EK +S G TTNNRME++AA+ AL LK P
Sbjct: 3 KHVEIFTDGSCLGNPGPGGYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C+V L TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+VD +W+K
Sbjct: 63 CRVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVDWHWVK 122
Query: 127 G 127
G
Sbjct: 123 G 123
>gi|218442496|ref|YP_002380817.1| ribonuclease H [Cyanothece sp. PCC 7424]
gi|218175267|gb|ACK73998.1| ribonuclease H [Cyanothece sp. PCC 7424]
Length = 2805
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIK----ALTAL 63
+ YTDG+ GNPG GGW ++ ++ SG +TTNNRMEL A I+
Sbjct: 2188 ITLYTDGSSLGNPGSGGWAYVICDHEGQRTANSGAVTDTTNNRMELTAVIEGIKTVKETY 2247
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K + + +DS YV K + K + +F + S +
Sbjct: 2248 KDISDIHVVSDSQYVLKSINGEWKNKKNTDLW-------------DEFNKISQNLNLTTE 2294
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGH G++ NE DR+A +AA +
Sbjct: 2295 WVKGHNGHELNELCDRLANSAAKELQK 2321
>gi|313896667|ref|ZP_07830215.1| ribonuclease HI [Selenomonas sp. oral taxon 137 str. F0430]
gi|312974584|gb|EFR40051.1| ribonuclease HI [Selenomonas sp. oral taxon 137 str. F0430]
Length = 223
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+TDG+C NPG GGW ++ + SGG+ ETTNNRMEL AA+KA++A+
Sbjct: 78 IIHTDGSCLRNPGGAGGWAAVIETAATGAVEEKSGGDPETTNNRMELTAALKAVSAVPAG 137
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+++LYTDS Y+ F+++ W++ GWK +D V N DLWM+ A A V W+
Sbjct: 138 SRIVLYTDSQYLKNAFTKFWLPAWKKRGWKKADGAPVLNQDLWMQLDAAFAARHVRFRWV 197
Query: 126 KGHAGNQENEKVDRIAR-NAAVSFK 149
KGHAGN NE+ D +AR A + K
Sbjct: 198 KGHAGNPRNERCDELARTEAMRAAK 222
>gi|291059742|gb|ADD72477.1| ribonuclease HI [Treponema pallidum subsp. pallidum str. Chicago]
Length = 169
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-------------KGKEKIISGGEKETTNNRMELMA 55
+ YTDGAC GNPGPGGW L + SG +TNNRMEL A
Sbjct: 7 LTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQTAPEAAAFTRSGSAYPSTNNRMELCA 66
Query: 56 AIKALTALKYPCK--VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
I AL V++ TDS YV KG +QWI W+ NGWKT+ K+ VKN DLW
Sbjct: 67 VINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSA 126
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ V+ W+KGHAG+ NE DR+A +AA
Sbjct: 127 LADALSVEWRWVKGHAGDPYNELCDRLATDAAR 159
>gi|226246542|ref|NP_035405.2| ribonuclease H1 [Mus musculus]
Length = 285
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 138 SVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAK 197
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 198 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 257
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
I GH+G NE+ DR+AR A ++
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGAKQSED 285
>gi|256824793|ref|YP_003148753.1| RNase HI [Kytococcus sedentarius DSM 20547]
gi|256688186|gb|ACV05988.1| RNase HI [Kytococcus sedentarius DSM 20547]
Length = 291
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ GNPGP GW + +GG TNN ELMA + L +
Sbjct: 2 ITAAADGSALGNPGPAGWAWYVDDDC---WAAGGWPHGTNNMGELMAVLDLLQQTAHLDD 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y S+W W++ GWK +D K V NIDL EA +V W+KG
Sbjct: 59 DLHVLCDSQYAINVISKWTPAWKRKGWKKADGKPVMNIDLVKALDEAMQGRRVTFEWVKG 118
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG+ NE D ARNAA++ +
Sbjct: 119 HAGHALNEAADERARNAALAHQR 141
>gi|89889942|ref|ZP_01201453.1| ribonuclease H, RNase H [Flavobacteria bacterium BBFL7]
gi|89518215|gb|EAS20871.1| ribonuclease H, RNase H [Flavobacteria bacterium BBFL7]
Length = 159
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ +VH YTDG+ GNPGPGG+G+++ + K +K S G + TTNNRMEL+A I+AL +
Sbjct: 1 MEQVHIYTDGSSRGNPGPGGYGIVMIWVGKNYKKEFSQGYRRTTNNRMELLAVIEALEKI 60
Query: 64 KYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K ++ ++TDS YV ++ + K DLW +F+++ + + +
Sbjct: 61 KMTDVQITVFTDSKYVSDAVNKNWIAGWIKRKWKNVKNP----DLWKRFIKSFNRTQPKM 116
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+KGH + NE+ D +A AA++ N +
Sbjct: 117 QWVKGHNDHPINERCDALAVGAALNKSNHL 146
>gi|330882111|gb|EGH16260.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. race 4]
Length = 145
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/127 (47%), Positives = 79/127 (62%)
Query: 23 PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGF 82
GWG LL KG EK + GGE TTNNRMEL AI+ L LK PC+V L TDS YV KG
Sbjct: 15 RAGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRPCEVTLVTDSQYVMKGI 74
Query: 83 SQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIAR 142
++W+ W++ GWKT+ K+ VKN DLW E ++H V W++GH G+ NE+ D++A
Sbjct: 75 TEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHNVKWQWVRGHIGHPGNERADQLAN 134
Query: 143 NAAVSFK 149
+
Sbjct: 135 RGVDEVR 141
>gi|158337786|ref|YP_001518962.1| ribonuclease HI [Acaryochloris marina MBIC11017]
gi|158308027|gb|ABW29644.1| ribonuclease HI [Acaryochloris marina MBIC11017]
Length = 257
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI---KALTALKYP 66
YTDGACSGNPGPGGWG ++ +K I G +TTNNRMEL AAI + L P
Sbjct: 10 IYTDGACSGNPGPGGWGSVIYFKDGSCHEIGGFVPQTTNNRMELQAAIAILELLQDQPLP 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LYTDS YV G ++W+ W++ GWKT+ K + ++ +D +I+
Sbjct: 70 KTIPLYTDSEYVKNGITKWLAGWKRKGWKTAKGK-AVLNQDLWQQLDQLNDATIDWRYIR 128
Query: 127 GHAGNQENEKVDRIARN 143
H G++ NE+ D+IAR
Sbjct: 129 AHGGHEGNERCDQIARA 145
>gi|18044436|gb|AAH19411.1| Ribonuclease H1 [Mus musculus]
Length = 285
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 138 SVIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAK 197
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 198 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 257
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
I GH+G NE+ DR+AR A ++
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGAKQSED 285
>gi|148705006|gb|EDL36953.1| ribonuclease H1, isoform CRA_a [Mus musculus]
Length = 286
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 139 SVIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAK 198
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 199 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 258
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
I GH+G NE+ DR+AR A ++
Sbjct: 259 MHIPGHSGFVGNEEADRLAREGAKQSED 286
>gi|300774864|ref|ZP_07084727.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
gi|300506679|gb|EFK37814.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
Length = 158
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
+ YTDGACSGNPG GG+G+L+R K +K S G ++TTNNRMEL+A I AL
Sbjct: 2 RIEIYTDGACSGNPGKGGYGILMRVPEKNYQKTFSRGFRKTTNNRMELLAVITALEKLKS 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++ +YTDS YV +Q + K DLW KFVE +H ++W
Sbjct: 62 TENEIHIYTDSKYVSDAINQNWIAGWIKRGWKNVKNP----DLWKKFVELYNKHNPKMHW 117
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
IKGHAG+ ENE D++A AA S
Sbjct: 118 IKGHAGHFENELCDKLAVAAANS 140
>gi|15639344|ref|NP_218793.1| ribonuclease H (rnhA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025586|ref|YP_001933358.1| ribonuclease H [Treponema pallidum subsp. pallidum SS14]
gi|6685892|sp|O83372|RNH_TREPA RecName: Full=Ribonuclease H; Short=RNase H
gi|238689319|sp|B2S2V0|RNH_TREPS RecName: Full=Ribonuclease H; Short=RNase H
gi|3322632|gb|AAC65340.1| ribonuclease H (rnhA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018161|gb|ACD70779.1| ribonuclease H [Treponema pallidum subsp. pallidum SS14]
Length = 169
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-------------KGKEKIISGGEKETTNNRMELMA 55
+ YTDGAC GNPGPGGW L + SG +TNNRMEL A
Sbjct: 7 LTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYPSTNNRMELCA 66
Query: 56 AIKALTALKYPCK--VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
I AL V++ TDS YV KG +QWI W+ NGWKT+ K+ VKN DLW
Sbjct: 67 VINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSA 126
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ V+ W+KGHAG+ NE DR+A +AA
Sbjct: 127 LADALSVEWRWVKGHAGDPYNELCDRLATDAAR 159
>gi|156741175|ref|YP_001431304.1| ribonuclease H [Roseiflexus castenholzii DSM 13941]
gi|156232503|gb|ABU57286.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941]
Length = 245
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V +TDG G GG+GV+L+++ + K ISGG +ETTNNRME+ A I+ L ALK P
Sbjct: 95 KVVMFTDGCFDSESGSGGYGVILKHRDRTKEISGGFRETTNNRMEIRACIEGLRALKRPS 154
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYWIK 126
+V++++DS YV S+ + ++ ++K + +E QH+V+ W+K
Sbjct: 155 EVVIFSDSKYVVDSMSKGWVQRWKDQGWMRNEKDQAENSDLWEQLLELCNQHRVEFRWVK 214
Query: 127 GHAGNQENEKVDRIARNAAV 146
GH +ENE+ D++A AA
Sbjct: 215 GHNHTKENERCDQLASEAAK 234
>gi|13878717|sp|O70338|RNH1_MOUSE RecName: Full=Ribonuclease H1; Short=RNase H1
gi|2935418|gb|AAC78562.1| ribonuclease H1 [Mus musculus]
Length = 285
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 138 SVIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAK 197
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 198 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 257
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
I GH+G NE+ DR+AR A ++
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGAKQSED 285
>gi|254415021|ref|ZP_05028784.1| RNase H, putative [Microcoleus chthonoplastes PCC 7420]
gi|196178168|gb|EDX73169.1| RNase H, putative [Microcoleus chthonoplastes PCC 7420]
Length = 302
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Query: 7 REVH-AYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKA---LT 61
R++ YTDGACSGNPGPGGWG V+ G I G +TTNNRMEL+AAI+A +
Sbjct: 5 RQIKSVYTDGACSGNPGPGGWGTVVYFTDGSVHEIGGATAKTTNNRMELLAAIEALILVQ 64
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ LYTDS YV G ++WIK W++ GWKTS K V N DLW K ++ V
Sbjct: 65 GSGQTQPITLYTDSEYVKNGITKWIKGWKKKGWKTSQGKAVLNQDLWEKLDAVNSPL-VT 123
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+++GH+GNQ NE+ D+IA A K+
Sbjct: 124 WQYVRGHSGNQGNERCDQIANAFANGKSPKL 154
>gi|56751922|ref|YP_172623.1| ribonuclease H [Synechococcus elongatus PCC 6301]
gi|56686881|dbj|BAD80103.1| ribonuclease H [Synechococcus elongatus PCC 6301]
Length = 261
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 87/149 (58%), Gaps = 7/149 (4%)
Query: 5 HLRE--VHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + YTDGAC+GNPGPGGWGV +++ G + + G + TTNNRMEL AAI AL
Sbjct: 2 PMSDAILRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALE 61
Query: 62 ALKYPC---KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V LYTDS YV KG +QW+K WQ+ GWKT+ K V ++
Sbjct: 62 FWRDHSDQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPV-LNQDLWMHLDDLNSP 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+++GH+G+ NE+ D+IAR+ A
Sbjct: 121 AAQWQYVRGHSGDPGNERCDQIARSFAQQ 149
>gi|315634675|ref|ZP_07889959.1| ribonuclease HI [Aggregatibacter segnis ATCC 33393]
gi|315476623|gb|EFU67371.1| ribonuclease HI [Aggregatibacter segnis ATCC 33393]
Length = 155
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 74/141 (52%), Positives = 101/141 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG G+LLRYK EK +S G TTNNRMEL+A ++AL +LK P
Sbjct: 3 KQIEIFTDGSCLGNPGPGGIGILLRYKQHEKQLSKGFLLTTNNRMELLAVVEALNSLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + LY+DS Y+ G +QWI W++N WK S K VKN DLW+ +A A+H VD W+K
Sbjct: 63 CDIHLYSDSQYMKNGITQWIFNWKKNNWKASSGKPVKNQDLWIALDQAIARHHVDWRWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GHAG++ENE D++A+ A +
Sbjct: 123 GHAGHRENEICDQLAKQGAEN 143
>gi|298489925|ref|YP_003720102.1| ribonuclease H ['Nostoc azollae' 0708]
gi|298231843|gb|ADI62979.1| Ribonuclease H ['Nostoc azollae' 0708]
Length = 302
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAI---KALTALKYP 66
YTDGAC+GNPGPGGW V++ + G + TTNN+ME+ AAI +
Sbjct: 10 IYTDGACTGNPGPGGWAVVVYFNDGSVHEMGDVSRHTTNNKMEMQAAIAALELFEKSGQT 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LYTDS YV ++W++ W++ GWK SD V+N DL ++ V ++
Sbjct: 70 EPITLYTDSEYVINSVTKWMQGWKKKGWKKSDGNPVQNQDLLQ-TLDQLNSRLVKWQHVR 128
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+GN NE+ D IAR+ A
Sbjct: 129 GHSGNIGNERCDVIARSFA 147
>gi|297624878|ref|YP_003706312.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
gi|297166058|gb|ADI15769.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
Length = 160
Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V YTDG+C GGW LL Y K SG +TTNNRMEL AA++AL+AL P
Sbjct: 17 KAVLIYTDGSCDTASRRGGWSYLLVYGEHRKTASGSASDTTNNRMELTAAVEALSALTEP 76
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V L TDS Y+ K FS+ + WQ+NGW+T+ K+ VKN DLW + +E +A+H++ W
Sbjct: 77 CAVTLVTDSQYLKKAFSEGWLRSWQRNGWRTAGKQPVKNRDLWERLLELTARHQLTWRWT 136
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+GHAG+ ENE VDR+A A +
Sbjct: 137 RGHAGDPENELVDRLALQARQRGR 160
>gi|295132156|ref|YP_003582832.1| ribonuclease HI [Zunongwangia profunda SM-A87]
gi|294980171|gb|ADF50636.1| ribonuclease HI [Zunongwangia profunda SM-A87]
Length = 153
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 7/140 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+V YTDGA GNPGPGG+G+++ + K +K + G K TTNNRMEL+A I+AL LK
Sbjct: 4 QVRIYTDGAARGNPGPGGYGIVMEWVGKSYKKEFAQGFKHTTNNRMELLAVIEALKKLKK 63
Query: 66 PC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++TDS YV + GW+ + K KN DLW F++ +H++ W
Sbjct: 64 PNLNIRVFTDSKYVVDAVEKKWVF----GWEKKNFKDRKNADLWKDFLKEYRKHQIVFTW 119
Query: 125 IKGHAGNQENEKVDRIARNA 144
IKGH + +NE+ D +A A
Sbjct: 120 IKGHNNHPQNERCDALAVKA 139
>gi|163839243|ref|YP_001623648.1| ribonuclease HI [Renibacterium salmoninarum ATCC 33209]
gi|162952719|gb|ABY22234.1| ribonuclease HI [Renibacterium salmoninarum ATCC 33209]
Length = 290
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
+ A DG+ NPGP GW + ++ +GG TNN+ ELMA + A
Sbjct: 2 TITAAADGSALNNPGPAGWAWYI---DEQTWRAGGWPHGTNNQGELMAVLDLFRATAHLP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV ++W+ W++ GW+ +D K V N+++ + A + W+
Sbjct: 59 AEPLHILCDSQYVINCVTKWMPGWKRKGWRKADGKPVLNVEMLKEIDAALVRRTYQFEWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAG+ NE D AR A+ +++N
Sbjct: 119 KGHAGHDLNEAADSKARAASTAYQN 143
>gi|315924528|ref|ZP_07920747.1| ribonuclease HI [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622058|gb|EFV02020.1| ribonuclease HI [Pseudoramibacter alactolyticus ATCC 23263]
Length = 148
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 6 LREVHAYTDGACSGNP----GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
++ V YTDG C GN GG G +L Y +K G + TTNN+MEL+A I AL
Sbjct: 1 MKNVEIYTDGGCRGNGQDRENIGGIGGVLIYGDYQKEFKKGYRNTTNNKMELLAVITALK 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC+V +++DS+YV F+Q W+ GW ++N +LW + +QH+V
Sbjct: 61 MLKEPCRVTIHSDSAYVVNAFNQNWISGWKAKGWTRGKAGALRNAELWQELDRLVSQHEV 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGHA + N + D + A
Sbjct: 121 IFTKVKGHADDAGNNRADALVNQAMDEL 148
>gi|227497258|ref|ZP_03927490.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
gi|226833129|gb|EEH65512.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
Length = 189
Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + + +GG E+TNNR EL A ++ L A
Sbjct: 2 TIIAAADGSALGNPGPAGWAWYV---DESCWAAGGWPESTNNRGELTAVLELLRATAAAG 58
Query: 68 ----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++L+ DS YV ++W W++ GW+ +D K V N DL A +V
Sbjct: 59 LAGEELLIQADSQYVINSLTKWRHGWKKRGWRKADGKPVLNEDLMKALDAELAGRQVRFE 118
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFK 149
W+KGHAG+ NE+ D +AR AA +++
Sbjct: 119 WVKGHAGHPANERADDLARGAATAYQ 144
>gi|194220992|ref|XP_001502934.2| PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H
type II) [Equus caballus]
Length = 359
Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 208 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKA 267
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGW+TS K V N + +++ + +
Sbjct: 268 QNINKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKEVTNKEDFVELDRLTQGMDIQWM 327
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ GH+G NE+ DR+AR A ++++
Sbjct: 328 HVPGHSGFAGNEEADRLAREGAKQSEDRM 356
>gi|225010259|ref|ZP_03700731.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
gi|225005738|gb|EEG43688.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
Length = 156
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
+VH YTDGA SGNPGPGG+G+++ + +K S G TTNNRMEL+A I+AL K
Sbjct: 5 DVHVYTDGAASGNPGPGGYGIVMEWVGTPYKKEFSQGFTHTTNNRMELLAVIEALRKLKK 64
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P KVL++TDS YV + + W ++ K KN+DLW F++ +H+V W
Sbjct: 65 APLKVLVFTDSKYVVDAVEKKWLQ----RWVKTNFKDKKNVDLWKAFLKEYPKHEVRFQW 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
IKGH + +NE+ D +A AA K+
Sbjct: 121 IKGHNNHPQNERCDVLAV-AASKGKD 145
>gi|260913732|ref|ZP_05920208.1| ribonuclease H [Pasteurella dagmatis ATCC 43325]
gi|260632271|gb|EEX50446.1| ribonuclease H [Pasteurella dagmatis ATCC 43325]
Length = 154
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 71/141 (50%), Positives = 97/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPGPGG G+LLRYK EK IS G +TTNNRMEL A ++AL ALK P
Sbjct: 3 KQIEIFTDGSCLGNPGPGGIGILLRYKQHEKQISKGYIQTTNNRMELRAVVEALNALKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V L++DS Y+ G ++WI W++N WK S K VKN DLW+ +A +H ++ W+K
Sbjct: 63 CTVTLHSDSQYMKNGITKWIFNWKKNNWKASTGKPVKNQDLWIALDQAIQRHNINWQWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+G+ ENE D +A+ A
Sbjct: 123 GHSGHVENEICDELAKAGAEK 143
>gi|296125369|ref|YP_003632621.1| ribonuclease H [Brachyspira murdochii DSM 12563]
gi|296017185|gb|ADG70422.1| Ribonuclease H [Brachyspira murdochii DSM 12563]
Length = 163
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDG C GNPG G WG +L + I E TTNNRME+ AAIKAL LK+
Sbjct: 6 IIIYTDGGCRGNPGLGAWGAILISEKHNLRLEIGESEDNTTNNRMEMKAAIKALERLKHS 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LY+DS+Y+ G ++WI WQ+N W SDKK V+N + W++ +E S +H ++ +K
Sbjct: 66 HNIKLYSDSAYLVNGMTKWIYSWQKNNWIKSDKKPVENKEYWIRLIELSKKHDIEFIKVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH+ N+EN + D I
Sbjct: 126 GHSNNKENNRADEIVNILMDKHIE 149
>gi|189502453|ref|YP_001958170.1| hypothetical protein Aasi_1098 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497894|gb|ACE06441.1| hypothetical protein Aasi_1098 [Candidatus Amoebophilus asiaticus
5a2]
Length = 152
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LKYPC 67
+ YTDGA SGNPGPG + +L+YK K + G + TTNNRMEL A I L A K
Sbjct: 2 ITIYTDGASSGNPGPGAYAAILQYKDYSKELVQGFRNTTNNRMELWAVIAGLEALKKDKQ 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+++Y+DS YV + W K KNIDLW +F H + W+KG
Sbjct: 62 HIVVYSDSRYVVDAVEKGWL----QSWIKKGFKGKKNIDLWKRFWSLYVNHHITFNWVKG 117
Query: 128 HAGNQENEKVDRIAR 142
HAG+ +NE+ D++A
Sbjct: 118 HAGDPKNERCDKLAT 132
>gi|325474720|gb|EGC77906.1| ribonuclease H [Treponema denticola F0402]
Length = 160
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKG---KEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ YTDGACS NPGPGGW ++ K + +GGEK TTNNRMELMA I+AL +K
Sbjct: 3 IEIYTDGACSKNPGPGGWAYIIVNKDLKEEICRENGGEKSTTNNRMELMAVIRALKKIKE 62
Query: 65 -------------YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
+ ++TDS YV +G S WI W++N WKT+ K+ VKN DLW +
Sbjct: 63 GAASLADKSGKALDYKSISVHTDSQYVQQGISSWIFNWKKNNWKTASKQPVKNQDLWQEL 122
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
SA K + W+KGHAGN NE DR+A A
Sbjct: 123 DSLSASIKPEWIWVKGHAGNPLNEACDRLAVEACQKM 159
>gi|238928173|ref|ZP_04659933.1| ribonuclease H [Selenomonas flueggei ATCC 43531]
gi|238884133|gb|EEQ47771.1| ribonuclease H [Selenomonas flueggei ATCC 43531]
Length = 217
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+TDG+C NPG GGW ++ + SGG ETTNNRMEL AA+ AL+A+
Sbjct: 75 IIHTDGSCLRNPGGAGGWAAVIETAATGAVEERSGGAPETTNNRMELTAALMALSAVPEG 134
Query: 67 CKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V LYTDS Y+ F+++ W++ GWK +D + V N DLW++ A A V +W+
Sbjct: 135 ARVALYTDSQYLKNAFTKFWLPAWKKRGWKKADGEPVLNQDLWVQLDVAFAARHVQFHWV 194
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
KGHAG+ NE+ D +AR A F
Sbjct: 195 KGHAGDPRNERCDALARAEAERF 217
>gi|154245049|ref|YP_001416007.1| ribonuclease H [Xanthobacter autotrophicus Py2]
gi|154159134|gb|ABS66350.1| Ribonuclease H [Xanthobacter autotrophicus Py2]
Length = 245
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 9 VHAYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A+TDG+C GNPGPGGW GV+L G + ++G +TTNNRMEL AA+ AL AL
Sbjct: 2 IAAHTDGSCLGNPGPGGWAGVILDADGTARTLTGFAPDTTNNRMELTAALMALGALPADV 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV-DLYWIK 126
+L+ DS YV KG + W+ ++ GWKT+ K V N DLW + A + + ++ W++
Sbjct: 62 PSVLFCDSEYVVKGLNTWLASRERRGWKTAQDKPVANADLWRQLSAAKVERPLAEIRWVR 121
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAGN NE VDR+AR A K +
Sbjct: 122 GHAGNTMNETVDRLARAEAEKAKLSV 147
>gi|257460241|ref|ZP_05625344.1| ribonuclease HI [Campylobacter gracilis RM3268]
gi|257442306|gb|EEV17446.1| ribonuclease HI [Campylobacter gracilis RM3268]
Length = 140
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 5/133 (3%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V ++DG+C GNPG GGW +L+Y K SG E TTNN+MEL AAI L+ALK
Sbjct: 1 MKSVKLFSDGSCLGNPGAGGWAYILQYGDAIKKASGAEAMTTNNQMELTAAIMGLSALKQ 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
PC+V L+TDS YV K S W+ KW +K + +++ A+A H++ W+
Sbjct: 61 PCRVELFTDSEYVVKAISSWLAKWVATDFKGKKNADLWR-----RYLAAAAPHEIKASWV 115
Query: 126 KGHAGNQENEKVD 138
KGHAG+ +NE+ D
Sbjct: 116 KGHAGHPQNEECD 128
>gi|58584563|ref|YP_198136.1| ribonuclease HI [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58418879|gb|AAW70894.1| Ribonuclease HI [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 136
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/132 (48%), Positives = 92/132 (69%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
DGACSGNPG GGW ++ ++ K + G E+ TT+N+MEL A I L ALK+ C + LYT
Sbjct: 2 DGACSGNPGTGGWAAIILFQDYRKDVYGREENTTSNKMELTAVINGLKALKFSCNINLYT 61
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQE 133
DS YV G ++W+ KW+ NGWKTS K++VKNI+LW + ++QHK++ W+K H G++
Sbjct: 62 DSLYVKSGITEWVSKWKVNGWKTSSKRSVKNIELWKELDNIASQHKINWKWVKAHNGDKH 121
Query: 134 NEKVDRIARNAA 145
NE+ + +AR A
Sbjct: 122 NEEANNLARKAI 133
>gi|119960568|ref|YP_946792.1| RNase H [Arthrobacter aurescens TC1]
gi|119947427|gb|ABM06338.1| putative RNase H [Arthrobacter aurescens TC1]
Length = 375
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
+ A DG+ GNPGP GW + +GG TNN+ ELMA + +
Sbjct: 2 TIIAAADGSALGNPGPAGWAWYVDDSC---WRAGGWPHGTNNQGELMAVLDLFRSTAHVP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++L+ DS YV ++W+ W++ GW+ +D K V N+DL +A K W+
Sbjct: 59 QEELLILCDSQYVINCITKWMPGWKRKGWRKADGKPVLNVDLLKDIDQAIVGRKYTFEWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG+ NE D AR A +++ +
Sbjct: 119 KGHAGHDLNEAADERARAVASAYQQGV 145
>gi|306823522|ref|ZP_07456897.1| ribonuclease H [Bifidobacterium dentium ATCC 27679]
gi|309802938|ref|ZP_07697039.1| ribonuclease HI [Bifidobacterium dentium JCVIHMP022]
gi|304553229|gb|EFM41141.1| ribonuclease H [Bifidobacterium dentium ATCC 27679]
gi|308220405|gb|EFO76716.1| ribonuclease HI [Bifidobacterium dentium JCVIHMP022]
Length = 400
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GWG + +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWGWADHDLNAGGTPGHDHAGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W+ W++NGWK S KK VKN L +Q
Sbjct: 62 EALRAHPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIKAIDAEISQ 121
Query: 118 HK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++K+
Sbjct: 122 RPGPVKFVWVKGHAGNAGNEKVDELARTYADDCRSKV 158
>gi|171741225|ref|ZP_02917032.1| hypothetical protein BIFDEN_00299 [Bifidobacterium dentium ATCC
27678]
gi|283455412|ref|YP_003359976.1| ribonuclease H [Bifidobacterium dentium Bd1]
gi|171276839|gb|EDT44500.1| hypothetical protein BIFDEN_00299 [Bifidobacterium dentium ATCC
27678]
gi|283102046|gb|ADB09152.1| rnh Ribonuclease H [Bifidobacterium dentium Bd1]
Length = 400
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GWG + +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWGWADHDLNAGGTPGHDHAGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W+ W++NGWK S KK VKN L +Q
Sbjct: 62 EALRAHPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIKAIDAEISQ 121
Query: 118 HK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++K+
Sbjct: 122 RPGPVKFVWVKGHAGNAGNEKVDELARTYADDCRSKV 158
>gi|301167093|emb|CBW26672.1| ribonuclease H (RNase H) [Bacteriovorax marinus SJ]
Length = 213
Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT 61
K+ + ++DGAC GNPGPG WG++ + SG E TTNNRME++ A++A+
Sbjct: 58 KNDKSFAIFSDGACRGNPGPGAWGMVGQDSSGAVLFKGSGVETNTTNNRMEMIGALEAMK 117
Query: 62 ALKYP------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+LK+ KV LY+DS YV G W+ W+ GWK +DKKT +N+DLW + +
Sbjct: 118 SLKHHGINLSESKVFLYSDSKYVVDGMKSWVSGWKSRGWKKADKKTPENVDLWKELDTIA 177
Query: 116 AQH-KVDLYWIKGHAGNQENEKVDRIARNA 144
+ + W+KGHAG+ +NE D++A A
Sbjct: 178 SCFENIQYLWVKGHAGHPQNELCDQLANEA 207
>gi|61556933|ref|NP_001013115.1| ribonuclease H1 [Rattus norvegicus]
gi|81909480|sp|Q5BK46|RNH1_RAT RecName: Full=Ribonuclease H1; Short=RNase H1
gi|60688306|gb|AAH91209.1| Ribonuclease H1 [Rattus norvegicus]
gi|149051044|gb|EDM03217.1| ribonuclease H1, isoform CRA_a [Rattus norvegicus]
Length = 285
Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+T
Sbjct: 138 SVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAK 197
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 198 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 257
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
I GH+G NE+ DR+AR A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGAKQ 282
>gi|332373760|gb|AEE62021.1| unknown [Dendroctonus ponderosae]
Length = 266
Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--AL 63
V YTDGAC N P G G I TNN E+ A I+AL
Sbjct: 118 VVVYTDGACENNGKPNAKAGVGAWFSDGNPMNISEPVVGRPTNNTAEIQAPIEALKLLKS 177
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDL 122
+ KV ++TDS + ++WI KW++N WK ++ VKN + ++ Q +
Sbjct: 178 QGFKKVKIFTDSQFTINCITKWIHKWKKNQWKLANGGPVKNKEDLVQLDALCQQFLDIKW 237
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
+ GH G + NE+ DR+AR A+ ++
Sbjct: 238 EYCAGHKGIKGNEEADRLAREGALRYR 264
>gi|27262506|gb|AAN87534.1| Ribonuclease H [Heliobacillus mobilis]
Length = 158
Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 17 CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSS 76
CSGNPGPGG+GV+L Y K +SGG ++TTNNRME++AAI+ L ALK PC+V LY+DS
Sbjct: 18 CSGNPGPGGYGVVLIYGEHRKEMSGGYQDTTNNRMEMLAAIRGLEALKEPCRVTLYSDSR 77
Query: 77 YVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENE 135
Y+ Q ++W+ N W + K N+DLW K ++ +H VD W+KGHAG+ ENE
Sbjct: 78 YLVDAVKQGWARRWKANNWMRNKKDPALNVDLWKKLLDLLDKHDVDFQWVKGHAGHPENE 137
Query: 136 KVDRIARNAAVS 147
+ D +A +AA
Sbjct: 138 RCDVLATSAAAK 149
>gi|225012045|ref|ZP_03702482.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
gi|225003600|gb|EEG41573.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
Length = 162
Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA-L 63
+ V+ YTDG+ GNPGPGG+G+ L + K S G TTNNRMEL+A I L
Sbjct: 4 KPVYLYTDGSSLGNPGPGGYGLRLEWAEMSYVKEFSQGFVRTTNNRMELLAVIVGLELLK 63
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K P +V++++DS YV + GW+ K KN DLW +F++ +H V+
Sbjct: 64 KQPLEVVVFSDSKYVIDSVDKKWVF----GWEKKAFKDKKNSDLWKRFLKIYRKHNVNFQ 119
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
WIKGH + +NE+ D +A AA
Sbjct: 120 WIKGHNQHPQNERCDELAVIAAK 142
>gi|78222155|ref|YP_383902.1| ribonuclease H [Geobacter metallireducens GS-15]
gi|123756478|sp|Q39X47|RNH_GEOMG RecName: Full=Ribonuclease H; Short=RNase H
gi|78193410|gb|ABB31177.1| RNase HI [Geobacter metallireducens GS-15]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 94/144 (65%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V + DGACSGNPG GGWG +LR EK +SG E ETTNNRME+ AAI+ L AL PC
Sbjct: 4 RVELFCDGACSGNPGVGGWGGILRCGATEKELSGAEWETTNNRMEMTAAIRGLEALTRPC 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V++ TDS Y+ KG ++W+ W + GW S K+ V N DLW + +E S H++ WI+G
Sbjct: 64 EVVVTTDSQYLVKGMTEWLSGWIRRGWVNSKKEPVLNRDLWERLLELSKTHRIQWTWIRG 123
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
H G+ ENE+ D +AR A + K
Sbjct: 124 HNGHAENERCDALARGAIDELRKK 147
>gi|186686041|ref|YP_001869237.1| ribonuclease H [Nostoc punctiforme PCC 73102]
gi|186468493|gb|ACC84294.1| ribonuclease H [Nostoc punctiforme PCC 73102]
Length = 302
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAI---KALTALKYP 66
YTDGAC+GNPGPGGWGV++ + G TTNN+ME+ AAI + L +
Sbjct: 10 IYTDGACTGNPGPGGWGVVVYFSDGSIHEMGDASPHTTNNKMEMQAAIAALQFLQTSQQA 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ L+TDS Y+ ++W+K W++ GWK SD K V+N +L E + Q +V ++
Sbjct: 70 QPITLHTDSEYLINCVTKWVKGWKKKGWKKSDGKPVQNQELLETLDELNTQ-QVKWQHVR 128
Query: 127 GHAGNQENEKVDRIARNAA 145
GH+GN NE+ D IAR A
Sbjct: 129 GHSGNIGNERCDAIARTYA 147
>gi|284504158|ref|YP_003406873.1| ribonuclease H [Marseillevirus]
gi|282935596|gb|ADB03911.1| ribonuclease H [Marseillevirus]
Length = 141
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+C NPG GG+GV++ + +SG ETTNN+ E A I AL+ L P +
Sbjct: 3 QIYTDGSCLKNPGKGGYGVVITRNDEVLSTLSGHMAETTNNQAEAAACIVALSWLSEPTE 62
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + +DS YV G ++WI W++NGW+T++KK V N + W++ +++HKV W+
Sbjct: 63 VEICSDSKYVVDGITKWIGGWKKNGWRTANKKPVLNKEFWLELDRLNSKHKVTWTWV-AR 121
Query: 129 AGNQENEKVDRIARNAAVS 147
+ ++ N D++A +AA
Sbjct: 122 SSHEFNVMADKLANDAAKE 140
>gi|42528070|ref|NP_973168.1| ribonuclease HI [Treponema denticola ATCC 35405]
gi|81831338|sp|Q73K21|RNH_TREDE RecName: Full=Ribonuclease H; Short=RNase H
gi|41819115|gb|AAS13087.1| ribonuclease HI [Treponema denticola ATCC 35405]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS---GGEKETTNNRMELMAAIKALTALK- 64
+ YTDGACS NPGPGGW ++ K ++ I GGEK TTNNRMELMA I+AL +K
Sbjct: 3 IEIYTDGACSKNPGPGGWAYIMVNKDSKEEICRENGGEKSTTNNRMELMAVIRALKKIKE 62
Query: 65 -------------YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
+ ++TDS YV +G S WI W++N WKT+ K+ VKN DLW +
Sbjct: 63 GAASLADKSGKALDYKSISVHTDSQYVQQGISSWIFNWKKNNWKTASKQPVKNQDLWQEL 122
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
SA K + W+KGHAGN NE DR+A A
Sbjct: 123 DSLSASIKPEWIWVKGHAGNPLNEACDRLAVEACQKM 159
>gi|114050737|ref|NP_001039970.1| ribonuclease H1 [Bos taurus]
gi|86438465|gb|AAI12855.1| Ribonuclease H1 pseudogene 1 [Bos taurus]
gi|296484317|gb|DAA26432.1| ribonuclease H1 [Bos taurus]
Length = 280
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 64 --KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ K++LYTDS + G + W+K W+QNGW+TS K V N + + + + +
Sbjct: 192 KAQDITKLVLYTDSMFTINGITTWVKGWKQNGWRTSTGKEVTNKEDFAELERLARGMDIQ 251
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ GH+G + NE+ DR+AR A
Sbjct: 252 WMHVPGHSGFRGNEEADRLAREGAKQ 277
>gi|328950436|ref|YP_004367771.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
gi|328450760|gb|AEB11661.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
Length = 150
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 72/136 (52%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDG+ G GGW LLRY+G+EK++SGGE TTNNRMEL AA++AL ALK PC
Sbjct: 6 VEVYTDGSADR-FGRGGWAALLRYEGREKLLSGGEAATTNNRMELRAALEALRALKRPCV 64
Query: 69 VLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V++YTDS Y+ K F++ ++WQ+NGW+T VKN DLW +E +H+V W++G
Sbjct: 65 VVVYTDSQYLQKAFAEGWLERWQRNGWRTRAGAPVKNQDLWRALLEEIRRHEVRWRWVEG 124
Query: 128 HAGNQENEKVDRIARN 143
HAG+ ENE+VDR A+
Sbjct: 125 HAGHPENERVDREAQR 140
>gi|319944002|ref|ZP_08018282.1| ribonuclease HI [Lautropia mirabilis ATCC 51599]
gi|319742763|gb|EFV95170.1| ribonuclease HI [Lautropia mirabilis ATCC 51599]
Length = 155
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 1 MDSKHLREVHAYTDGACSG-NPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAI 57
M AYTDGAC+ NPGP WGV++ + +G TN E+ AAI
Sbjct: 1 MTDSMTNRWVAYTDGACAPTNPGPAAWGVVVFAPDGAETAADNGFIGPGTNQIAEITAAI 60
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ L+ V L +DS YV KG S+W W++ G++ + V N++LW + +
Sbjct: 61 EGLSRTPEGAAVELVSDSQYVLKGLSEWRAGWERRGFRNAKGDPVANLELWKRLFAVADA 120
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
KV + W++GH GN NE+ DR+A A +
Sbjct: 121 RKVSVRWVRGHQGNVNNERADRLAVAALQKAR 152
>gi|33864357|ref|NP_895917.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9313]
gi|33641137|emb|CAE22267.1| possible ribonuclease HI [Prochlorococcus marinus str. MIT 9313]
Length = 257
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 86/146 (58%), Gaps = 5/146 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIK- 58
M R V A TDGACSGNPGPGGWG LLR+ G + G TTNNRMEL AA+
Sbjct: 1 MADGRGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGYAPATTNNRMELQAALHV 60
Query: 59 --ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L L + + TDS Y+ G S+W+ W++ GW+T+ K V N DLW A
Sbjct: 61 LEQLKELPCHPDLKIRTDSKYLIDGLSKWMAGWKRKGWRTAAGKPVLNQDLWRALDRARL 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H V L ++KGH+G+ +NE+VD+IA
Sbjct: 121 DH-VPLAYVKGHSGDPDNERVDQIAV 145
>gi|307718235|ref|YP_003873767.1| ribonuclease HI [Spirochaeta thermophila DSM 6192]
gi|306531960|gb|ADN01494.1| ribonuclease HI [Spirochaeta thermophila DSM 6192]
Length = 143
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/140 (47%), Positives = 93/140 (66%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGW ++ G+ + GGE+ TTNNRMEL+A IKAL + +
Sbjct: 2 IEVYTDGACKGNPGPGGWAYVVVRDGEGEGAFGGERMTTNNRMELLAVIKALERVDAGGR 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV +G ++WI +W NGWKT D++ VKN DLW + +A+ +++ W++GH
Sbjct: 62 VRVYTDSEYVRRGITEWIDRWLANGWKTRDRRDVKNRDLWERLWRLAAEVELEWVWVQGH 121
Query: 129 AGNQENEKVDRIARNAAVSF 148
AG NE DR+A AA+
Sbjct: 122 AGVGWNEVCDRMAHLAALKA 141
>gi|126303925|ref|XP_001381337.1| PREDICTED: similar to ribonuclease H1 [Monodelphis domestica]
Length = 342
Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG CS N G GV + TN R E+ AA KA+ +
Sbjct: 195 VVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVADRLLGRQTNQRAEIHAACKAIEQAKNQ 254
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K++LYTDS + G + WIK W++NGWKTS K V N + ++K + +
Sbjct: 255 NINKLVLYTDSMFTINGITSWIKDWKKNGWKTSTGKEVINKEDFVKLDTLTQGIDIKWIH 314
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A +
Sbjct: 315 VPGHSGFAGNEEADRLAREGAKKSQE 340
>gi|291409767|ref|XP_002721174.1| PREDICTED: ribonuclease H1 [Oryctolagus cuniculus]
Length = 286
Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNLSIRLPGRQTNQRAEIHAACKAIEQAKA 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ + +
Sbjct: 200 QNIHKLVLYTDSMFTINGITNWVEGWKKNGWRTSAGKEVINKEDFMQLESLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFTGNEEADRLAREGAKQAED 286
>gi|282896288|ref|ZP_06304310.1| Ribonuclease H [Raphidiopsis brookii D9]
gi|281198784|gb|EFA73663.1| Ribonuclease H [Raphidiopsis brookii D9]
Length = 309
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 11 AYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDGAC GNPGPGGWGV+ + G + TTNN+ME+ AAI AL +V
Sbjct: 10 IYTDGACKGNPGPGGWGVVAYFHDGSIHEMGEASDHTTNNQMEIQAAIAALQLFAQSGQV 69
Query: 70 LL---YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
Y+DS Y+ ++WI W++ GWK SD T +K ++ + V ++
Sbjct: 70 EPITLYSDSEYLINSVTKWIHGWKKRGWKKSD-GTSVQNQDLLKVIDKLNTNLVKWQHVR 128
Query: 127 GHAGNQENEKVDRIARNAA 145
GH GN NE+ D IAR+ A
Sbjct: 129 GHTGNIGNERCDVIARSFA 147
>gi|300871726|ref|YP_003786599.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
gi|300689427|gb|ADK32098.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
Length = 163
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDG C GNPG G WG +L + I E+ TTNN+ME+ AAIKAL LK+
Sbjct: 6 IIIYTDGGCRGNPGIGAWGAILLSEKHNLRLEIGESEEHTTNNKMEMQAAIKALERLKHS 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LY+DS+Y+ G + WI WQ+N W SDKK V+N D W+K +E S +H ++ +K
Sbjct: 66 HNIKLYSDSAYLVNGMNSWIYSWQKNNWIKSDKKPVENKDYWLKLIELSKKHSIEFIKVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH+ N+EN + D I
Sbjct: 126 GHSSNKENNRADEIVNILMDEHIK 149
>gi|261192988|ref|XP_002622900.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239589035|gb|EEQ71678.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239613618|gb|EEQ90605.1| RNase H domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 434
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + + TN R EL A I+AL
Sbjct: 243 LKIYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD--- 121
V ++TDS Y + W WQ+N W T+ K V+N DL + + V
Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILMKIEERTVMNVK 362
Query: 122 --LYWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH+ + NE DR+A N A +
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGAKNA 391
>gi|320040502|gb|EFW22435.1| ribonuclease H [Coccidioides posadasii str. Silveira]
Length = 246
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIK 58
++ + YTDG+ GN G GV + + + TN R EL A +
Sbjct: 62 PPNM--LKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISR 119
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL V +YTDS Y + W +WQ+N W T+D K V+N DL +
Sbjct: 120 ALDIAPRHRDVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDHKPVENKDLVQSIRAKIEER 179
Query: 119 -----KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
K W+KGH + NE DR+A A + +I
Sbjct: 180 TLLNVKTLFEWVKGHNKDPGNEAADRLAVRGAKTGLQEI 218
>gi|303321962|ref|XP_003070975.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110672|gb|EER28830.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 420
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIK 58
++ + YTDG+ GN G GV + + + TN R EL A +
Sbjct: 236 PPNM--LKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISR 293
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL V +YTDS Y + W +WQ+N W T+D K V+N DL +
Sbjct: 294 ALDIAPRHRDVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDHKPVENKDLVQSIRAKIEER 353
Query: 119 -----KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
K W+KGH + NE DR+A A + +I
Sbjct: 354 TLLNVKTLFEWVKGHNKDPGNEAADRLAVRGAKTGLQEI 392
>gi|282901341|ref|ZP_06309266.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
gi|281193620|gb|EFA68592.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
Length = 306
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN----RMELMAAIKALTALKYP 66
YTDGAC GNPGPGGWGV++ + G + T N + A++ L
Sbjct: 10 IYTDGACKGNPGPGGWGVVVYFHDGSIHEMGEASDYTTNNQMEIQAAIGALELLAQSGQV 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LY+DS Y+ ++WI W++ GWK SD V+N +L ++ V ++
Sbjct: 70 EPITLYSDSEYLINSVTKWIHGWKKKGWKKSDGTPVQNQELLK-IIDKLNTKLVRWQHVR 128
Query: 127 GHAGNQENEKVDRIARNAA 145
GHAGN NE+ D IAR+ A
Sbjct: 129 GHAGNIGNERCDVIARSFA 147
>gi|320334968|ref|YP_004171679.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
gi|319756257|gb|ADV68014.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
Length = 184
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y+DGAC G GGW +LRY +E +SG ETTNNRMEL ++ L ALK PC+
Sbjct: 42 VDLYSDGACDTQAGHGGWATILRYGDRELELSGNATETTNNRMELTGLLEGLRALKRPCQ 101
Query: 69 VLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + TDS Y+ K F+ WQ+NGW+T+ K VKN DLW ++ + +H + W++G
Sbjct: 102 VRVVTDSQYLRKAFTDGWVLNWQRNGWRTAAKDPVKNQDLWEALIDEARKHAMTFVWVRG 161
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H G+ ENE+VD +A +
Sbjct: 162 HNGHAENERVDVLAVQERKKLRK 184
>gi|72091396|ref|XP_789772.1| PREDICTED: similar to Ribonuclease H1 [Strongylocentrotus
purpuratus]
gi|115608331|ref|XP_001180331.1| PREDICTED: similar to Ribonuclease H1 [Strongylocentrotus
purpuratus]
Length = 234
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI---KALTA 62
+ YTDGACS N G GV + E + TN R EL AA+ + +
Sbjct: 84 LVVYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQINE 143
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KV LYTDS Y + WI +W++NGWKT+ K V N + +K + + + V
Sbjct: 144 HHKRRKVTLYTDSKYTINCVTDWIHRWKKNGWKTAQKTDVINKEDLVKLDKLNRELDVKW 203
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
++ GH NE+ D++AR A
Sbjct: 204 EYVPGHKNVYGNERADKLAREGA 226
>gi|119196199|ref|XP_001248703.1| hypothetical protein CIMG_02474 [Coccidioides immitis RS]
Length = 420
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIK 58
++ + YTDG+ GN G GV + + + TN R EL A +
Sbjct: 236 PPNM--LKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISR 293
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL V +YTDS Y + W +WQ+N W T+D K V+N DL +
Sbjct: 294 ALDIAPRHRDVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDNKPVENKDLVQSIRAKIEER 353
Query: 119 -----KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
K W+KGH + NE DR+A A + +I
Sbjct: 354 TLLNVKTLFEWVKGHNKDPGNEAADRLAVRGAKTGLQEI 392
>gi|258569833|ref|XP_002543720.1| ribonuclease H [Uncinocarpus reesii 1704]
gi|237903990|gb|EEP78391.1| ribonuclease H [Uncinocarpus reesii 1704]
Length = 418
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKAL 60
++ ++ YTDG+ GN G GV + + + TN R EL A +AL
Sbjct: 237 NM--LNIYTDGSALGNGKLRAKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 294
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-- 118
V +YTDS Y + W +WQ+N W T+D K V+N DL + +
Sbjct: 295 DIAPRHRDVTIYTDSKYSIDCVTVWCIRWQRNKWMTADSKPVENKDLIQSILTKIEERTS 354
Query: 119 ---KVDLYWIKGHAGNQENEKVDRIARNAAV 146
K W+KGH + NE DR+A A
Sbjct: 355 LNVKTLFEWVKGHNKHPGNEAADRLAVRGAR 385
>gi|78185718|ref|YP_378152.1| ribonuclease HI [Synechococcus sp. CC9902]
gi|78170012|gb|ABB27109.1| RNase HI [Synechococcus sp. CC9902]
Length = 247
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAA--- 56
M R V A TDGAC GNPGPGGWG LLR+ G + + G + TTNNRMEL AA
Sbjct: 1 MADGRGRVVAAATDGACRGNPGPGGWGALLRFEDGSVEELGGYDPATTNNRMELQAALAL 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++ L L + L TDS Y+ G W+K W++ GW+T+ K V N DLW EA
Sbjct: 61 LERLKDLPRHPDLTLRTDSKYLIDGLGSWMKGWKRKGWRTAAGKPVLNQDLWKSLDEARL 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L +KGH+G+ +NE+VDRIA
Sbjct: 121 D-DVPLTHVKGHSGDPDNERVDRIAVA 146
>gi|75907733|ref|YP_322029.1| ribonuclease H [Anabaena variabilis ATCC 29413]
gi|75701458|gb|ABA21134.1| Ribonuclease H [Anabaena variabilis ATCC 29413]
Length = 302
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAI---KALTALKYP 66
YTDGAC+GNPGPGGWGV++ + G + K TTNN+ME+ AAI K L
Sbjct: 10 IYTDGACTGNPGPGGWGVVVYFSDGSVHEMGDAAKHTTNNKMEMQAAIAALKFLHDSGQT 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LYTDS Y+ ++W+K W++ GWK SD V+N DL E KV+ + ++
Sbjct: 70 EPITLYTDSEYLINCVTKWVKGWKKKGWKKSDGNPVQNQDLLETLDE-LNSRKVNWHHVR 128
Query: 127 GHAGNQENEKVDRIAR 142
GH+GN NE+ D IAR
Sbjct: 129 GHSGNIGNERCDVIAR 144
>gi|326916464|ref|XP_003204527.1| PREDICTED: ribonuclease H1-like [Meleagris gallopavo]
Length = 253
Score = 101 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG CSGN G GV I TN R E+ AA KA+ +
Sbjct: 108 VVYTDGCCSGNGRNRARAGIGVYWGPDHPLNISERLPGRQTNQRAEIHAACKAIEQAKSQ 167
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+++YTDS + G + W++ W+ NGWKTS +V N + + K S ++
Sbjct: 168 NIKKLIIYTDSKFTINGITSWVENWKTNGWKTSSGGSVINKEDFQKLDSLSKGIEIQWMH 227
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
I GHAG Q NE+ DR+AR A K
Sbjct: 228 IPGHAGFQGNEEADRLAREGASKQK 252
>gi|315186302|gb|EFU20063.1| Ribonuclease H [Spirochaeta thermophila DSM 6578]
Length = 143
Score = 101 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 93/138 (67%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGAC GNPGPGGW ++ G+ + GGE+ TTNNRMEL+A IKAL + +
Sbjct: 2 IEVYTDGACKGNPGPGGWAYVVVRDGEGEGAFGGERMTTNNRMELLAVIKALERVDAGGR 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V +YTDS YV +G ++WI +W NGWKT D++ VKN DLW + +A+ +++ W++GH
Sbjct: 62 VRVYTDSEYVRRGITEWIDRWLANGWKTRDRRDVKNRDLWERLWRLAAEVELEWVWVQGH 121
Query: 129 AGNQENEKVDRIARNAAV 146
AG NE DR+A AA+
Sbjct: 122 AGVGWNEVCDRMAHLAAL 139
>gi|323650991|ref|YP_004243634.1| ribonuclease H [Bacillus subtilis subsp. natto]
gi|323461631|dbj|BAJ77047.1| ribonuclease H [Bacillus subtilis subsp. natto]
Length = 155
Score = 101 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V Y DGA N GG+G +LRY K I G + TNN ME+ AAI+AL
Sbjct: 1 MKKVVIYCDGAARNNGKDNNIGGFGAVLRYGNHVKTIKAGFRNVTNNMMEIRAAIEALKQ 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHK- 119
V + TDS+Y+ +Q K N T+ KK V+N LW++ +E Q
Sbjct: 61 LKTTNIPVEINTDSAYLCNCMNQGWYKKWMNNGWVTAGKKPVENRQLWIELIELVEQFPF 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ +KGH+G +NE DR+A A
Sbjct: 121 ITFNKVKGHSGIPDNELADRLANEAMDEL 149
>gi|325954482|ref|YP_004238142.1| ribonuclease H [Weeksella virosa DSM 16922]
gi|323437100|gb|ADX67564.1| Ribonuclease H [Weeksella virosa DSM 16922]
Length = 157
Score = 101 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 84/145 (57%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAI-KALTALKY 65
+ AYTDG+ GNPGPGG+G++L K+ K ++ G + TTNNRMEL+A I K
Sbjct: 3 IIAYTDGSSLGNPGPGGYGLILLETEKKIKKEVNKGYRLTTNNRMELLAVIVALEMLKKP 62
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ +YTDS YV + GW + K KN DLW +F++ +H+V L W+
Sbjct: 63 NTPITIYTDSKYVVDAVEKKWVF----GWMKKNFKGKKNEDLWRRFLQVYPKHQVQLVWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHAGN NE+ D +A A+ + +N
Sbjct: 119 KGHAGNVWNERADELAVLASNTKEN 143
>gi|319952828|ref|YP_004164095.1| ribonuclease h [Cellulophaga algicola DSM 14237]
gi|319421488|gb|ADV48597.1| Ribonuclease H [Cellulophaga algicola DSM 14237]
Length = 155
Score = 101 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+VH YTDGA GNPGPGG+G+++ + K +K S G K TTNNRMEL+A I+AL LK
Sbjct: 5 QVHIYTDGAARGNPGPGGYGIVMEWVGKPYKKEFSEGFKHTTNNRMELLAVIEALKKLKN 64
Query: 66 PCK-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V ++TDS YV + + K DLW F+ + KV W
Sbjct: 65 EGTAVKVFTDSKYVVDTVEKKWYVKWEKTNFKDKKNP----DLWKLFLIEYRKQKVSFQW 120
Query: 125 IKGHAGNQENEKVDRIARNA 144
IKGH +++NE+ D +A A
Sbjct: 121 IKGHNNHRQNERCDTLAVAA 140
>gi|17227638|ref|NP_484186.1| ribonuclease H [Nostoc sp. PCC 7120]
gi|17135120|dbj|BAB77666.1| ribonuclease H [Nostoc sp. PCC 7120]
Length = 302
Score = 101 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 11 AYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAI---KALTALKYP 66
YTDGAC+GNPGPGGWGV++ + G + K TTNN+ME+ AAI K L
Sbjct: 10 IYTDGACTGNPGPGGWGVVVYFSDGSVHEMGDAAKHTTNNKMEMQAAIAALKFLHDSGQA 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ LYTDS Y+ ++W+K W++ GWK SD V+N DL E KV+ + ++
Sbjct: 70 EPITLYTDSEYLINCVTKWVKGWKKKGWKKSDGNPVQNQDLLETLDE-LNSRKVNWHHVR 128
Query: 127 GHAGNQENEKVDRIAR 142
GH+GN NE+ D IAR
Sbjct: 129 GHSGNIGNERCDVIAR 144
>gi|297570719|ref|YP_003696493.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
gi|296931066|gb|ADH91874.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
Length = 194
Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ TDGACSGNPGPGGW + + + +SGG +TTNN MEL A ++AL
Sbjct: 46 RPSSSHTLVIATDGACSGNPGPGGWAFV--DQTRGYGLSGGAAQTTNNIMELTAMMRALE 103
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--K 119
+LL DS YV ++W W++ GW+ +D K V N +L + + +
Sbjct: 104 YAGPDVDLLLRVDSKYVIDSMTKWAPGWRKRGWRKADGKPVLNRELIERILNLYEARTGR 163
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
D+ W++GH G+ N+ DR+A + ++K
Sbjct: 164 TDVEWVRGHNGDPGNDLADRLAVEQSNAYKK 194
>gi|124024471|ref|YP_001018778.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9303]
gi|123964757|gb|ABM79513.1| possible ribonuclease HI [Prochlorococcus marinus str. MIT 9303]
Length = 257
Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIK- 58
M R V A TDGACSGNPGPGGWG LLR+ G + G TTNNRMEL AA+
Sbjct: 1 MADGRGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGHAPATTNNRMELQAALHV 60
Query: 59 --ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L L + + TDS Y+ G S+W+ W++ GW+T+ K + ++ +
Sbjct: 61 LEQLKELPCHPDLKIRTDSKYLIDGLSKWMAGWKRKGWRTAAGKP-VLNQDLWRALDRAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
V L ++KGH+G+ +NE+VD+IA
Sbjct: 120 LDDVPLAYVKGHSGDPDNERVDQIAV 145
>gi|184201482|ref|YP_001855689.1| ribonuclease H [Kocuria rhizophila DC2201]
gi|183581712|dbj|BAG30183.1| ribonuclease HI [Kocuria rhizophila DC2201]
Length = 371
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKY 65
+ A DG+ GNPGP GW + +GG TNN EL A + T +
Sbjct: 2 TIIASADGSALGNPGPAGWAWYI---DPTSWRAGGWAHGTNNMGELTAVLDLLEATRHRR 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ +Y DS YV ++W+ W++ GWK D K V N+D+ + KV W+
Sbjct: 59 DEALTVYCDSQYVINSVTKWMPGWKKKGWKKRDGKPVLNVDIMKALDRELSGRKVTFEWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
KGHAG++ NE D AR A++++ KI
Sbjct: 119 KGHAGHELNEAADERARAMAMAYQRKI 145
>gi|116074053|ref|ZP_01471315.1| possible ribonuclease HI [Synechococcus sp. RS9916]
gi|116069358|gb|EAU75110.1| possible ribonuclease HI [Synechococcus sp. RS9916]
Length = 275
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELM---AA 56
M R V A TDGACSGNPGPGGWG LLRY G + G TTNNRMEL A
Sbjct: 1 MVEGPGRVVAAATDGACSGNPGPGGWGALLRYEDGSVEEFGGFAPATTNNRMELQAALAV 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++ L L + L TDS Y+ G W+K W++ GWKT+ K + ++ +
Sbjct: 61 LERLQDLPRHPDLRLRTDSKYLIDGLGSWMKGWKRKGWKTAAGKP-VLNQDLWQALDRAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L ++KGH+G+ +NE+VD+IA
Sbjct: 120 LDDVPLAYVKGHSGDPDNERVDQIAVA 146
>gi|225619653|ref|YP_002720910.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
gi|225214472|gb|ACN83206.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
Length = 163
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDG C GNPG G W +L + I E TTNNRME+ AAIKAL LK+
Sbjct: 6 IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEIGESEDNTTNNRMEMKAAIKALERLKHS 65
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ L++DS+Y+ G ++WI WQ+N W SDKK V+N + W++ +E S +H ++ +K
Sbjct: 66 HSIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLRLIELSKKHDIEFIKVK 125
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH+ N+EN + D I
Sbjct: 126 GHSTNKENNRADEIVNILMDEHIE 149
>gi|116071975|ref|ZP_01469243.1| possible ribonuclease HI [Synechococcus sp. BL107]
gi|116065598|gb|EAU71356.1| possible ribonuclease HI [Synechococcus sp. BL107]
Length = 247
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAA--- 56
M R V A TDGAC GNPGPGGWG LLR+ G + + G TTNNRMEL AA
Sbjct: 1 MADGRGRVVAAATDGACRGNPGPGGWGALLRFEDGSVEELGGYHPATTNNRMELQAALAL 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++ L L + L TDS Y+ G W+K W++ GW+T+ K K ++A+
Sbjct: 61 LERLKDLPRHPDLTLRTDSKYLIDGLGSWMKGWKRKGWRTAAGKP-VLNQDLWKSLDAAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L +KGH+G+ +NE+VDRIA
Sbjct: 120 LDDVPLTHVKGHSGDPDNERVDRIAVA 146
>gi|226290451|gb|EEH45935.1| ribonuclease H1 [Paracoccidioides brasiliensis Pb18]
Length = 419
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV K + + TN R EL A I+AL
Sbjct: 241 LRIYTDGSSLRNGRMGAKAGVGVYFGPGDKRNVSEPLKGSRQTNQRAELTAIIRALDIAP 300
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD--- 121
V ++TDS Y + W WQ+N W TS+ K V+N DL +E + V
Sbjct: 301 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTSEDKPVENKDLIQSILEKIQERAVLNVK 360
Query: 122 --LYWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH + NE DR+A N A S
Sbjct: 361 TLFEWVRGHNRDPGNEAADRLAVNGARSA 389
>gi|150024308|ref|YP_001295134.1| ribonuclease HI [Flavobacterium psychrophilum JIP02/86]
gi|149770849|emb|CAL42314.1| Ribonuclease HI [Flavobacterium psychrophilum JIP02/86]
Length = 159
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTA-LK 64
+VH YTDGA GNPGPGG+GV++ G +K G + TTNNRMEL+A I L
Sbjct: 4 QVHIYTDGAAKGNPGPGGYGVVMELVGTAFKKEFYEGFRHTTNNRMELLAVIVGLEKLKN 63
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KVL+ +DS YV + GW+ K KN DLW + + +H+VD W
Sbjct: 64 PNMKVLVVSDSKYVVDSVEKKWVL----GWEKKGFKDRKNSDLWKRLLIIYRKHQVDFKW 119
Query: 125 IKGHAGNQENEKVDRIARNA 144
IKGH + +NE+ D++A A
Sbjct: 120 IKGHNSHPQNERCDQLAVFA 139
>gi|33866868|ref|NP_898427.1| ribonuclease HI [Synechococcus sp. WH 8102]
gi|33639469|emb|CAE08853.1| possible ribonuclease HI [Synechococcus sp. WH 8102]
Length = 248
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIK- 58
M + R V A TDGACSGNPGPGGWG LLR+ G + G + TTNNRMEL AA++
Sbjct: 1 MAEERGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGHDPATTNNRMELQAALEL 60
Query: 59 --ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L L + + TDS Y+ G W+K W++ GWKT+ K K ++A+
Sbjct: 61 LQRLKQLPRHPDLTIRTDSKYLIDGLGSWMKGWKRKGWKTAAGKP-VLNQDLWKALDAAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L ++KGH+G+ +N++VDRIA
Sbjct: 120 LDDVPLAYVKGHSGDPDNDRVDRIAVA 146
>gi|45384532|ref|NP_990329.1| ribonuclease H1 [Gallus gallus]
gi|516686|dbj|BAA05382.1| unnamed protein product [Gallus gallus]
Length = 293
Score = 99 bits (247), Expect = 9e-20, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG CSGN G GV I TN R E+ AA KA+ +
Sbjct: 148 VVYTDGCCSGNGRNRARAGIGVYWGPGHPLNISERLPGRQTNQRAEIHAACKAIEQAKSQ 207
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+++YTDS + G + W++ W+ NGW+TS +V N + + K S ++
Sbjct: 208 NIKKLIIYTDSKFTINGITSWVENWKTNGWRTSSGGSVINKEDFQKLDSLSKGIEIQWMH 267
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
I GHAG Q NE+ DR+AR A K
Sbjct: 268 IPGHAGFQGNEEADRLAREGASKQK 292
>gi|237749779|ref|ZP_04580259.1| ribonuclease HI [Helicobacter bilis ATCC 43879]
gi|229374644|gb|EEO25035.1| ribonuclease HI [Helicobacter bilis ATCC 43879]
Length = 145
Score = 99 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE-----KIISGGEKETTNNRMELMAAIKAL 60
++ V YTDG+ GNPG G+ LL YK +SGGE +TN RMEL A ++ L
Sbjct: 1 MKSVTLYTDGSSLGNPGASGYCALLEYKAPNGRVFHTQVSGGETYSTNGRMELKAVVEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L PC+V++ +DS YV Q++ WQ K VK+ DLW +++ A+H +
Sbjct: 61 KMLTEPCRVVIVSDSKYVCDSIEQYLPNWQ-----KKGFKDVKHTDLWGEYIHVGAKHTI 115
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
W+K H G+ +NE D++AR A +
Sbjct: 116 TTQWVKAHNGHPQNEHCDKVARENANLY 143
>gi|163955164|ref|YP_001648268.1| hypothetical protein OsV5_192f [Ostreococcus virus OsV5]
gi|163638613|gb|ABY27972.1| hypothetical protein OsV5_192f [Ostreococcus virus OsV5]
Length = 146
Score = 99 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC--K 68
YTDG+C GNPGPGGW V+ G ISGG+ TTNN ME+ A ++AL +
Sbjct: 4 IYTDGSCLGNPGPGGWAVV----GAGIKISGGQAGTTNNVMEMTAVVQALQQCLARDILE 59
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKG 127
+ L+TDS+YV G + WIK W++NGW+T+ VKN +LW+ + V+ W+K
Sbjct: 60 IRLFTDSTYVKNGITSWIKNWKRNGWRTAAGAPVKNKELWIDIDTLSQRMTSVEWRWVKA 119
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
H G+ +NE VD +AR A KN+
Sbjct: 120 HNGHPQNELVDTMARQEATEIKNR 143
>gi|42524517|ref|NP_969897.1| ribonuclease H [Bdellovibrio bacteriovorus HD100]
gi|39576726|emb|CAE80890.1| ribonuclease H [Bdellovibrio bacteriovorus HD100]
Length = 263
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 6/143 (4%)
Query: 7 REVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ Y+DGACSGNPGPGGWG V+L + + + GEK TTNNRME+ AA++AL A+ +
Sbjct: 19 DHIMIYSDGACSGNPGPGGWGSVILYPDNQVQELGDGEKSTTNNRMEMTAALEALKAVAH 78
Query: 66 PC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW----MKFVEASAQHKV 120
V YTDS+Y+ +G +QW+ W++ GWKT++ V N D+W Q K+
Sbjct: 79 MKVPVRFYTDSTYLIRGITQWVHGWRRRGWKTAEGGEVSNQDIWEDLSHVVAARGTQGKI 138
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
+ ++ +GH G NE+ DRIA
Sbjct: 139 EWHYSRGHVGIPGNERCDRIAVA 161
>gi|147898893|ref|NP_001084684.1| hypothetical protein LOC414644 [Xenopus laevis]
gi|46249528|gb|AAH68735.1| MGC81203 protein [Xenopus laevis]
Length = 300
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--K 64
YTDG CSGN G GV + E TN R E+ AA +AL +
Sbjct: 153 VVYTDGCCSGNGRVKARAGIGVYWGQGHPLNLAEKLEGRQTNQRAEIQAACRALEQAKAQ 212
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K++LYTDS + G ++WI W++NGWK S K V N + + + + +
Sbjct: 213 NLTKLVLYTDSMFTINGITKWIHSWKRNGWKLSTGKNVINREDFENLEKMTQGLDIKWMH 272
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
I GHAG NE D+++R A
Sbjct: 273 IPGHAGFAGNEAADKLSREGARK 295
>gi|109101888|ref|XP_001097079.1| PREDICTED: ribonuclease H1 [Macaca mulatta]
Length = 286
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKA 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLARKGAKQLED 286
>gi|301787875|ref|XP_002929354.1| PREDICTED: ribonuclease H1-like [Ailuropoda melanoleuca]
Length = 285
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV I TN R E+ AA KA+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + + +
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGMDIQWM 258
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 259 HVPGHSGFTGNEEADRLAREGAKQSED 285
>gi|78213974|ref|YP_382753.1| RNase HI [Synechococcus sp. CC9605]
gi|78198433|gb|ABB36198.1| possible ribonuclease HI [Synechococcus sp. CC9605]
Length = 252
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKA 59
M R V A TDGACSGNPGPGGWG LLR+ G + G +TTNNRMEL AA++
Sbjct: 1 MAEGRGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGHAPDTTNNRMELQAALEV 60
Query: 60 LT---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L L + L TDS Y+ G WIK W++ GWKT+ K K ++A+
Sbjct: 61 LQRLEQLPRHPDLTLRTDSKYLIDGLGSWIKGWKRKGWKTAAGKP-VLNQDLWKALDAAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L ++KGH+G+ +NE+VDRIA
Sbjct: 120 LDDVPLSYVKGHSGDPDNERVDRIAVA 146
>gi|281341314|gb|EFB16898.1| hypothetical protein PANDA_019509 [Ailuropoda melanoleuca]
Length = 241
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV I TN R E+ AA KA+
Sbjct: 95 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 154
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + + +
Sbjct: 155 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGMDIQWM 214
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 215 HVPGHSGFTGNEEADRLAREGAKQSED 241
>gi|260435843|ref|ZP_05789813.1| RNase HI [Synechococcus sp. WH 8109]
gi|260413717|gb|EEX07013.1| RNase HI [Synechococcus sp. WH 8109]
Length = 252
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKA 59
M R V A TDGACSGNPGPGGWG LLR+ G + G +TTNNRMEL AA++
Sbjct: 1 MAEGRGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGHAPDTTNNRMELQAALEV 60
Query: 60 LT---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L L + L TDS Y+ G WIK W++ GWKT+ K K ++A+
Sbjct: 61 LQRLEQLPRHPDLTLRTDSKYLIDGLGSWIKGWKRKGWKTAAGKP-VLNQDLWKALDAAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
V L ++KGH+G+ +NE+VDRIA
Sbjct: 120 LDDVPLRYVKGHSGDPDNERVDRIAVA 146
>gi|120437701|ref|YP_863387.1| ribonuclease HI [Gramella forsetii KT0803]
gi|117579851|emb|CAL68320.1| ribonuclease HI [Gramella forsetii KT0803]
Length = 154
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAI-KALTALK 64
+VH YTDGA GNPGPGG+GV++ + K +K + G K TTNNRMELMA I
Sbjct: 5 KVHIYTDGAARGNPGPGGFGVVMEWVGKPYKKEYAQGFKLTTNNRMELMAVIVAISKLKN 64
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++TDS YV ++ W+ + KN DLW F++ +H+V W
Sbjct: 65 PGTPAKVFTDSKYVADAVNKGWVF----NWEKKNFVNRKNTDLWKAFLKVFRRHEVQFQW 120
Query: 125 IKGHAGNQENEKVDRIARNA 144
IKGH + +NE+ D +A A
Sbjct: 121 IKGHNDHPQNERCDALAVMA 140
>gi|115532542|ref|NP_001040786.1| RNase H family member (rnh-1.0) [Caenorhabditis elegans]
gi|29570460|gb|AAO91712.1| Rnase h protein 1.0, isoform c, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 251
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
YTDGACS N GWGV ++ TNNR EL+A KA+
Sbjct: 104 VVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEK 163
Query: 67 C--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KV++ TDS+ + + + WI W++ GWKTS V N D+ MK + KV
Sbjct: 164 RLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLH 223
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
++GHAG NEK D +AR A F +
Sbjct: 224 VRGHAGIDGNEKADELARKGAQMFIKR 250
>gi|156541318|ref|XP_001599895.1| PREDICTED: similar to MGC115609 protein [Nasonia vitripennis]
Length = 279
Score = 99.2 bits (245), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALK 64
YTDGACS N G GV + + + TNN E+ A +
Sbjct: 133 EVYTDGACSSNGRRNAKAGIGVWFSERNAYNVSQPVDGRATNNIAEIQAVTIAASQAQKA 192
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+ + TDS ++ +QW+ KW++ GW+TS K V N ++ +A A +V
Sbjct: 193 GIKKLKINTDSQFLISCITQWMPKWKKCGWQTSTGKPVINKTELIEMEKALAPLQVSWNH 252
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
++GH G NE DR+AR+ A + K
Sbjct: 253 VRGHVGIHGNEMADRLARSGAERYGEK 279
>gi|242008555|ref|XP_002425068.1| asparagine-rich protein, putative [Pediculus humanus corporis]
gi|212508733|gb|EEB12330.1| asparagine-rich protein, putative [Pediculus humanus corporis]
Length = 710
Score = 99.2 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTAL 63
V YTDG C N G G+ + TNN E+ AA L
Sbjct: 552 VQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVAMELAIK 611
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ ++TDSS++ ++WI++W++NGW D VKN + K + + KV
Sbjct: 612 AGIKKLKIFTDSSFLINCATKWIRRWKKNGWTLVDGGKVKNREELEKLDLVAQKLKVKWE 671
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
++GH+G + NE DR+A A+ FK I
Sbjct: 672 KVEGHSGIKGNEMADRLANAGALKFKKSI 700
>gi|290343640|ref|YP_003495007.1| hypothetical protein OTV1_168 [Ostreococcus tauri virus 1]
gi|260161055|emb|CAY39756.1| hypothetical protein OTV1_168 [Ostreococcus tauri virus 1]
Length = 146
Score = 99.2 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R+ YTDG+C GNPGPGGW V+ G ISGG+ TTNN ME+ A ++AL
Sbjct: 1 MRD--IYTDGSCLGNPGPGGWAVV----GAGIKISGGQAGTTNNVMEMTAVVQALQQCLA 54
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDL 122
++ L+TDS+YV G + WIK W++NGW+T+ VKN +LW+ + V+
Sbjct: 55 RDILEIRLFTDSTYVKNGITSWIKNWKRNGWRTAAGAPVKNKELWIDIDTLSQRMTSVEW 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W++ H G+ +NE VD +AR A KN+
Sbjct: 115 RWVRAHNGHPQNELVDTMARQEATEIKNR 143
>gi|254414065|ref|ZP_05027833.1| RNase H, putative [Microcoleus chthonoplastes PCC 7420]
gi|196179201|gb|EDX74197.1| RNase H, putative [Microcoleus chthonoplastes PCC 7420]
Length = 1624
Score = 99.2 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE------KIISGGEKETTNN-RMELM 54
+ ++V Y DG+ GNPG GGWGV+L Y + + +SG + E T N RME++
Sbjct: 1262 NPSPQKKVVMYCDGSSLGNPGQGGWGVVLSYTNPQTGQTTTRELSGADSEQTTNSRMEIL 1321
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
AAIK L A++ C+V ++TDS+Y+ K N DL + E
Sbjct: 1322 AAIKGLEAIQDTCEVEIHTDSNYLIGAM--------------QGNKRKANQDLLTRLDEL 1367
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRI 140
S H++ + +KGH+GN NE+ D++
Sbjct: 1368 SQNHQISWHHVKGHSGNALNERCDQL 1393
>gi|87300794|ref|ZP_01083636.1| possible ribonuclease HI [Synechococcus sp. WH 5701]
gi|87284665|gb|EAQ76617.1| possible ribonuclease HI [Synechococcus sp. WH 5701]
Length = 258
Score = 99.2 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAI-- 57
M ++ +R V A DGAC GNPGPGGWG LLR+ G + + G TTNNRMEL AA+
Sbjct: 1 MAAEPVRVVAAACDGACRGNPGPGGWGCLLRFEDGSVRELGGAAAATTNNRMELTAALAL 60
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L L + L TDS Y+ G ++W+ W++ GW+T+ + ++ +
Sbjct: 61 MEELRQLPLHPDLRLRTDSRYLIDGLTKWMPGWKRKGWRTASGGP-VLNRDLWEELDRAR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
+ L +KGH+G+ +N++ D IA
Sbjct: 120 LPGLSLAHVKGHSGDPDNDRCDEIAVA 146
>gi|54696208|gb|AAV38476.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 99.2 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|227536556|ref|ZP_03966605.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
gi|227243633|gb|EEI93648.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
Length = 169
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-----------EKIISGGEKETTNNRMELMAAI 57
+ YTDGA SGNPGPGG+G +LR + EK S G + TTNNRMELMA I
Sbjct: 5 IELYTDGASSGNPGPGGYGTILRTRYSGENEAFKGKLIEKTFSEGFRRTTNNRMELMAVI 64
Query: 58 KALTA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L A +V +Y+DS YV + K DLW++ +++
Sbjct: 65 IGLEALKSPQQQVTIYSDSKYVIDAIDKKWVYGWIQKGFQGKKNK----DLWIRLMKSYK 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
H+V L W+KGHAG+ +NE+ D++A A
Sbjct: 121 LHQVRLVWVKGHAGHPDNERCDQLAVAA 148
>gi|227494312|ref|ZP_03924628.1| prolyl aminopeptidase [Actinomyces coleocanis DSM 15436]
gi|226832046|gb|EEH64429.1| prolyl aminopeptidase [Actinomyces coleocanis DSM 15436]
Length = 662
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-P 66
+ A DG+ NPGP GW + + +GG K TNN EL A + L + +
Sbjct: 2 TIIAAADGSALKNPGPTGWAWAI---DESTWRAGGFKHGTNNIGELYAVLDLLKSTAHLD 58
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS YV ++WI W++ WK +D V N++L + KV W++
Sbjct: 59 EPLHILADSRYVIDSMTKWIHGWKRKDWKKADGSPVLNVELIQEIDALMQGRKVTFEWVR 118
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH+G+ NE VD AR AA +F++
Sbjct: 119 GHSGHDMNEFVDEKARAAATAFRD 142
>gi|313679742|ref|YP_004057481.1| RNAse HI [Oceanithermus profundus DSM 14977]
gi|313152457|gb|ADR36308.1| RNase HI [Oceanithermus profundus DSM 14977]
Length = 147
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/137 (53%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDG+ + GGW LLRY EK+ISG E TTNNRMEL AA+ AL ALK PC
Sbjct: 4 TVEVFTDGSAD-DKRRGGWAALLRYNKHEKLISGAEPNTTNNRMELTAAVMALRALKKPC 62
Query: 68 KVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V LYTDS Y+ K F+ +KWQ+NGWKT+ ++ VKN DLW+ +E +A+H+V +W +
Sbjct: 63 EVHLYTDSQYLKKAFTDGWLEKWQKNGWKTASRQPVKNKDLWLALLEETARHEVHWHWTR 122
Query: 127 GHAGNQENEKVDRIARN 143
GHAG++ENE VDR A+
Sbjct: 123 GHAGHRENELVDREAQR 139
>gi|15964344|ref|NP_384697.1| ribonuclease HI protein [Sinorhizobium meliloti 1021]
gi|15073521|emb|CAC45163.1| Probable ribonuclease HI protein [Sinorhizobium meliloti 1021]
Length = 169
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE------KETTNNRMELMAAIKAL 60
R +TDGAC NPGPGGWG +L+ + + +II + ETTNNRMEL A + L
Sbjct: 13 RRYIVHTDGACRNNPGPGGWGAVLQLEEEGEIIKEKDLSGTTISETTNNRMELSAVLGGL 72
Query: 61 TA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH- 118
+ + +DS YV G S W++ W++NGW+ +DK TV N+DLW + +
Sbjct: 73 RRLKDKTIPITVRSDSKYVVNGMSTWLEGWKRNGWRKADKTTVLNMDLWQELDQLQETLG 132
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W+KGH+G+ N++ DR+A A + +
Sbjct: 133 PISWVWVKGHSGDPMNDRCDRLANVAIDNALKR 165
>gi|300773552|ref|ZP_07083421.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
gi|300759723|gb|EFK56550.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
Length = 166
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-----------EKIISGGEKETTNNRMELMAAI 57
+ YTDGA SGNPGPGG+G +LR + EK S G + TTNNRMELMA I
Sbjct: 2 IELYTDGASSGNPGPGGYGTILRTRYSGENEAFKGKLIEKTFSEGFRRTTNNRMELMAVI 61
Query: 58 KALTA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L A +V +Y+DS YV + K DLW++ +++
Sbjct: 62 IGLEALKSPQQQVTIYSDSKYVIDAIDKKWVYGWIQKGFQGKKNK----DLWIRLMKSYK 117
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
H+V L W+KGHAG+ +NE+ D++A A
Sbjct: 118 LHQVRLVWVKGHAGHPDNERCDQLAVAA 145
>gi|295659076|ref|XP_002790097.1| ribonuclease H [Paracoccidioides brasiliensis Pb01]
gi|226281999|gb|EEH37565.1| ribonuclease H [Paracoccidioides brasiliensis Pb01]
Length = 420
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV K + +S K TN R EL A I+AL
Sbjct: 241 LRIYTDGSSLRNGRMGAKAGVGVYFGPGDKSRNVSEPLKGSRQTNQRAELTAIIRALDIA 300
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD-- 121
V ++TDS Y + W WQ+N W TS+ K V+N DL +E + V
Sbjct: 301 PRHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTSEDKPVENKDLIQSILEKIQERTVLNV 360
Query: 122 ---LYWIKGHAGNQENEKVDRIARNAAVSF 148
W++GH + NE D +A N A S
Sbjct: 361 KTLFEWVRGHNRDPGNEAADWLAVNGARSA 390
>gi|73979924|ref|XP_532858.2| PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H
type II) [Canis familiaris]
Length = 285
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + + +
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALEQLTQGMDIQWM 258
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 259 HVPGHSGFTGNEEADRLAREGAKQSED 285
>gi|61372889|gb|AAX43931.1| ribonuclease H1 [synthetic construct]
Length = 287
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|49456597|emb|CAG46619.1| RNASEH1 [Homo sapiens]
Length = 286
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|259089333|ref|NP_001158704.1| Ribonuclease H1 [Oncorhynchus mykiss]
gi|225704990|gb|ACO08341.1| Ribonuclease H1 [Oncorhynchus mykiss]
Length = 280
Score = 98.8 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG CSGN PG G GV + + TN R EL AA KAL K
Sbjct: 134 VVVYTDGCCSGNGKPGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 193
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K++LYTDS + G + W+K W+ N W+ + N + + K + + + KV
Sbjct: 194 MDIKKLVLYTDSKFTINGVTSWVKNWKLNNWRLKSGGPIINREDFEKLDKLNEELKVVWL 253
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
I GHAG NE+ DR++R A
Sbjct: 254 HIPGHAGYLGNEEADRLSREGAAK 277
>gi|54696206|gb|AAV38475.1| ribonuclease H1 [synthetic construct]
gi|61366338|gb|AAX42845.1| ribonuclease H1 pseudogene 1 [synthetic construct]
Length = 287
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|256090538|ref|XP_002581244.1| phosphoglucomutase [Schistosoma mansoni]
gi|238667101|emb|CAZ37483.1| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 817
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
D+ R V YTDG+C+G + G+GV + E E TNNR E+ A I A
Sbjct: 109 DASCPRRVMVYTDGSCNGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICA 168
Query: 60 LTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ + + TDS + ++W ++W +N WK ++ + K + + +E A+
Sbjct: 169 IKQAHIGGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAE 228
Query: 118 --HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ Y ++ H G NE+ D +A A+ K
Sbjct: 229 SGIEIIWYHVRSHRGVHGNEEADSLANIGAIDVK 262
>gi|256090536|ref|XP_002581243.1| phosphoglucomutase [Schistosoma mansoni]
gi|238667100|emb|CAZ37482.1| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 731
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
D+ R V YTDG+C+G + G+GV + E E TNNR E+ A I A
Sbjct: 23 DASCPRRVMVYTDGSCNGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICA 82
Query: 60 LTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ + + TDS + ++W ++W +N WK ++ + K + + +E A+
Sbjct: 83 IKQAHIGGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAE 142
Query: 118 --HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ Y ++ H G NE+ D +A A+ K
Sbjct: 143 SGIEIIWYHVRSHRGVHGNEEADSLANIGAIDVK 176
>gi|256090534|ref|XP_002581242.1| phosphoglucomutase [Schistosoma mansoni]
gi|238667099|emb|CAZ37481.1| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 826
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
D+ R V YTDG+C+G + G+GV + E E TNNR E+ A I A
Sbjct: 118 DASCPRRVMVYTDGSCNGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICA 177
Query: 60 LTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ + + TDS + ++W ++W +N WK ++ + K + + +E A+
Sbjct: 178 IKQAHIGGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAE 237
Query: 118 --HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ Y ++ H G NE+ D +A A+ K
Sbjct: 238 SGIEIIWYHVRSHRGVHGNEEADSLANIGAIDVK 271
>gi|33239678|ref|NP_874620.1| ribonuclease HI [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|81835868|sp|Q7VDY9|RNH_PROMA RecName: Full=Ribonuclease H; Short=RNase H
gi|33237203|gb|AAP99272.1| Ribonuclease HI [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 165
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 9/156 (5%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIK- 58
M KH R + A TDGACSGNPGPGGWG L+R+ G + G E TTNNRMEL AA++
Sbjct: 1 MTKKHGRIIAAATDGACSGNPGPGGWGALIRFEDGSVQEFGGFETNTTNNRMELTAALEV 60
Query: 59 --ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L + + TDS Y+ GF WIK W++ GW+T+ K + ++
Sbjct: 61 LKKLRDFDRDPHLRIRTDSKYLIDGFETWIKGWKKKGWRTASGK-QVLNQDLWEALDQYR 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V L ++KGH+G+ +NE+VD IA SF KI
Sbjct: 120 LANVRLEYVKGHSGDPDNERVDDIAV----SFSKKI 151
>gi|198423486|ref|XP_002128178.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 282
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY- 65
YTDGACS N G G+GV K + TN R E+ A KA+
Sbjct: 133 VVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192
Query: 66 -PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++L+ TDS +V ++W++ W + GW +D K V + + + ++ + V
Sbjct: 193 GHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEH 252
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+ GH GN NE D++A A
Sbjct: 253 VFGHRGNYGNEMADKLAVQGAT 274
>gi|212538155|ref|XP_002149233.1| ribonuclease H, putative [Penicillium marneffei ATCC 18224]
gi|210068975|gb|EEA23066.1| ribonuclease H, putative [Penicillium marneffei ATCC 18224]
Length = 420
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ GN G GV + + TN R EL A I+AL
Sbjct: 241 LRIYTDGSSLGNGKKVAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRALEIAP 300
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----- 119
V + TDS Y + W +KW +N W+TSD K V+N DL + +
Sbjct: 301 RHRPVTIVTDSRYSIDCVTNWFRKWIRNNWQTSDGKPVENKDLIQSILVKINERDSLKVT 360
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE+ DR+A N A
Sbjct: 361 TTFEWVKGHNRDAGNEEADRLAVNGAR 387
>gi|21359816|ref|NP_002927.2| ribonuclease H1 [Homo sapiens]
gi|13878716|sp|O60930|RNH1_HUMAN RecName: Full=Ribonuclease H1; Short=RNase H1; AltName:
Full=Ribonuclease H type II
gi|3004981|gb|AAC09261.1| ribonuclease H type II [Homo sapiens]
gi|12804229|gb|AAH02973.1| Ribonuclease H1 [Homo sapiens]
gi|60655541|gb|AAX32334.1| ribonuclease H1 [synthetic construct]
gi|62420309|gb|AAX82026.1| unknown [Homo sapiens]
gi|119621466|gb|EAX01061.1| ribonuclease H1 [Homo sapiens]
gi|123984355|gb|ABM83523.1| ribonuclease H1 [synthetic construct]
gi|123998297|gb|ABM86750.1| ribonuclease H1 [synthetic construct]
gi|193786833|dbj|BAG52156.1| unnamed protein product [Homo sapiens]
gi|311347258|gb|ADP90574.1| ribonuclease H1 [Homo sapiens]
gi|311347260|gb|ADP90575.1| ribonuclease H1 [Homo sapiens]
gi|311347262|gb|ADP90576.1| ribonuclease H1 [Homo sapiens]
gi|311347264|gb|ADP90577.1| ribonuclease H1 [Homo sapiens]
gi|311347266|gb|ADP90578.1| ribonuclease H1 [Homo sapiens]
gi|311347268|gb|ADP90579.1| ribonuclease H1 [Homo sapiens]
gi|311347270|gb|ADP90580.1| ribonuclease H1 [Homo sapiens]
gi|311347272|gb|ADP90581.1| ribonuclease H1 [Homo sapiens]
gi|311347274|gb|ADP90582.1| ribonuclease H1 [Homo sapiens]
gi|311347276|gb|ADP90583.1| ribonuclease H1 [Homo sapiens]
gi|311347278|gb|ADP90584.1| ribonuclease H1 [Homo sapiens]
gi|311347280|gb|ADP90585.1| ribonuclease H1 [Homo sapiens]
gi|311347282|gb|ADP90586.1| ribonuclease H1 [Homo sapiens]
gi|311347284|gb|ADP90587.1| ribonuclease H1 [Homo sapiens]
gi|311347286|gb|ADP90588.1| ribonuclease H1 [Homo sapiens]
gi|311347288|gb|ADP90589.1| ribonuclease H1 [Homo sapiens]
gi|311347290|gb|ADP90590.1| ribonuclease H1 [Homo sapiens]
gi|311347292|gb|ADP90591.1| ribonuclease H1 [Homo sapiens]
gi|311347294|gb|ADP90592.1| ribonuclease H1 [Homo sapiens]
gi|311347296|gb|ADP90593.1| ribonuclease H1 [Homo sapiens]
gi|311347298|gb|ADP90594.1| ribonuclease H1 [Homo sapiens]
gi|311347300|gb|ADP90595.1| ribonuclease H1 [Homo sapiens]
gi|311347302|gb|ADP90596.1| ribonuclease H1 [Homo sapiens]
gi|311347304|gb|ADP90597.1| ribonuclease H1 [Homo sapiens]
gi|311347306|gb|ADP90598.1| ribonuclease H1 [Homo sapiens]
gi|311347308|gb|ADP90599.1| ribonuclease H1 [Homo sapiens]
gi|311347310|gb|ADP90600.1| ribonuclease H1 [Homo sapiens]
gi|311347312|gb|ADP90601.1| ribonuclease H1 [Homo sapiens]
gi|311347314|gb|ADP90602.1| ribonuclease H1 [Homo sapiens]
gi|311347316|gb|ADP90603.1| ribonuclease H1 [Homo sapiens]
gi|311347318|gb|ADP90604.1| ribonuclease H1 [Homo sapiens]
gi|311347320|gb|ADP90605.1| ribonuclease H1 [Homo sapiens]
gi|311347322|gb|ADP90606.1| ribonuclease H1 [Homo sapiens]
gi|311347324|gb|ADP90607.1| ribonuclease H1 [Homo sapiens]
gi|311347326|gb|ADP90608.1| ribonuclease H1 [Homo sapiens]
gi|311347328|gb|ADP90609.1| ribonuclease H1 [Homo sapiens]
gi|311347330|gb|ADP90610.1| ribonuclease H1 [Homo sapiens]
gi|311347332|gb|ADP90611.1| ribonuclease H1 [Homo sapiens]
gi|311347334|gb|ADP90612.1| ribonuclease H1 [Homo sapiens]
gi|311347336|gb|ADP90613.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|156717518|ref|NP_001096299.1| ribonuclease H1 [Xenopus (Silurana) tropicalis]
gi|134023904|gb|AAI35623.1| LOC100124876 protein [Xenopus (Silurana) tropicalis]
Length = 299
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-- 61
V YTDG CS N G GV + E TN R E+ AA +AL
Sbjct: 149 DSVVVYTDGCCSQNGRLKARAGIGVYWGLNHPLNLAEKLEGRQTNQRAEIQAACRALELA 208
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ K++LYTDS + G ++WI W++NGWK + K V N + + K + + +
Sbjct: 209 KSQNISKLVLYTDSMFTINGITKWIHSWKRNGWKLTTGKKVINREDFEKLDKLTQGLDIK 268
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
I GHAG + NE DR++R A
Sbjct: 269 WMHIPGHAGFEGNEAADRLSREGAQK 294
>gi|114575921|ref|XP_001150506.1| PREDICTED: ribonuclease H1 isoform 2 [Pan troglodytes]
Length = 286
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|2935442|gb|AAC78563.1| ribonuclease H1 [Homo sapiens]
gi|2935444|gb|AAC78564.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|119025380|ref|YP_909225.1| ribonuclease H [Bifidobacterium adolescentis ATCC 15703]
gi|118764964|dbj|BAF39143.1| ribonuclease H [Bifidobacterium adolescentis ATCC 15703]
Length = 445
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GW ++ +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W++ W++NGWK S KK VKN DL A
Sbjct: 62 EALRAHPGSEDLVIETDSQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAH 121
Query: 118 H--KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++ +
Sbjct: 122 RAGSVRFVWVKGHAGNAGNEKVDELARTYAGDCRSHV 158
>gi|146298896|ref|YP_001193487.1| ribonuclease H [Flavobacterium johnsoniae UW101]
gi|146153314|gb|ABQ04168.1| Ribonuclease H [Flavobacterium johnsoniae UW101]
Length = 158
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA-LK 64
EVH YTDGA GNPG GG+GV++ +K G + TTNNRMEL+A I L
Sbjct: 4 EVHIYTDGAAKGNPGNGGYGVVMELVGTPYKKEFYEGFRLTTNNRMELLAVIVGLEKLKN 63
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KVL+ +DS YV + + T K DLW +F+ A +HKVD W
Sbjct: 64 PNMKVLVISDSKYVVDSVEKKWVFGWEKKGYTGKKNP----DLWKRFLIAYRKHKVDFKW 119
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
IKGH + +NE+ D++A A++ K +
Sbjct: 120 IKGHNNHPQNERCDQLAVMASMQPKLSV 147
>gi|270284446|ref|ZP_05966122.2| ribonuclease H [Bifidobacterium gallicum DSM 20093]
gi|270276890|gb|EFA22744.1| ribonuclease H [Bifidobacterium gallicum DSM 20093]
Length = 409
Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 4 KHLREVHAYTDGACSGNP-GPGGWGVLLR-------YKGKEKIISGGEKETTNNRMELMA 55
+ + + TDG+ GNP GP GW + +GG TN EL A
Sbjct: 30 ETM-TITVSTDGSALGNPNGPMGWAWADHTDGDEASHHHGGDCDAGGATNGTNQIGELCA 88
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
++AL A +++ TDS Y ++W+ W++NGWK S K+ VKN L
Sbjct: 89 VLQALRAHPGSEPLIIETDSQYAINCSTKWVHGWKKNGWKNSKKEPVKNAPLIKAIDAEL 148
Query: 116 AQH--KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V W+KGHAGN+ NEKVD +AR A ++
Sbjct: 149 RDRAGSVTFVWVKGHAGNEGNEKVDLLARTYAEDARS 185
>gi|156379280|ref|XP_001631386.1| predicted protein [Nematostella vectensis]
gi|156218425|gb|EDO39323.1| predicted protein [Nematostella vectensis]
Length = 272
Score = 98.0 bits (242), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALK 64
YTDG C+ N G GV K I TN R E++AA AL
Sbjct: 127 VVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESAKEM 186
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
KV + TDS Y G + WI+ W++NGWKT+D K VKN++ + K + ++ V
Sbjct: 187 GFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNLEDFQKLDKLCSEIDVHWTH 246
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+ GHAG + NE D++A+ A
Sbjct: 247 VAGHAGIEGNEIADQLAKGGADK 269
>gi|224048680|ref|XP_002197364.1| PREDICTED: ribonuclease H1 [Taeniopygia guttata]
Length = 299
Score = 98.0 bits (242), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG C+ N G GV TN R E+ AA +A+ +
Sbjct: 154 VVYTDGCCTSNGRSRARAGIGVYWGPGHPLNTSERLPGRQTNQRAEIHAACRAIEQAKTQ 213
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+++YTDS + G + W+ W+ NGW+TS +V N + + + + ++
Sbjct: 214 NIKKLIIYTDSKFTINGITSWVDNWKTNGWRTSSGGSVINKEDFERLDNLAKDIEIQWMH 273
Query: 125 IKGHAGNQENEKVDRIARNAAVSFK 149
I GHAG Q NE+ DR+AR A K
Sbjct: 274 IPGHAGFQGNEEADRLAREGARKQK 298
>gi|3043447|emb|CAA11835.1| RNase HII [Homo sapiens]
Length = 286
Score = 98.0 bits (242), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVRGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQSED 286
>gi|88856591|ref|ZP_01131248.1| ribonuclease H [marine actinobacterium PHSC20C1]
gi|88814245|gb|EAR24110.1| ribonuclease H [marine actinobacterium PHSC20C1]
Length = 173
Score = 98.0 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-P 66
+ A DG+ GNPGP GW + +GG K TNN+ ELMA ++ + +
Sbjct: 2 TITAAADGSALGNPGPAGWAWYVDDN---TWAAGGWKHATNNQGELMAVLQLFRSTAHVD 58
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+L+ DS YV ++W+ W++ GW+ SD K V N+DL + EA W++
Sbjct: 59 DDLLILCDSQYVINSVTKWMPGWKKKGWRKSDGKPVMNVDLLKQIDEAITGRLYRFEWVR 118
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH G+ NE D AR AA +F+
Sbjct: 119 GHVGHPLNEAADVRARGAAEAFQR 142
>gi|329945808|ref|ZP_08293495.1| ribonuclease HI [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528256|gb|EGF55234.1| ribonuclease HI [Actinomyces sp. oral taxon 170 str. F0386]
Length = 249
Score = 98.0 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + A DG+ GNPGP GW + +GG + +TNNR EL A ++ L
Sbjct: 56 MGRVPSMTLIAAADGSSLGNPGPAGWAWYVDDDC---WAAGGWESSTNNRGELTAVLELL 112
Query: 61 TALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
A + ++L+ DS YV ++W W++ GW+ +D K V N DL A
Sbjct: 113 RATEAAGLAGEELLIQCDSQYVINSLTKWRHGWKKRGWRKADGKPVLNADLVKDLDAALT 172
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V W++GH G+ NE D AR AA + +
Sbjct: 173 GRTVRFEWVRGHVGHPMNEAADSRARGAATAHQ 205
>gi|159902759|ref|YP_001550103.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9211]
gi|159887935|gb|ABX08149.1| Ribonuclease HI [Prochlorococcus marinus str. MIT 9211]
Length = 163
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 5/146 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKA 59
M + H + A TDGACSGNPGPGGWG L+R+ G K G E++TTNNRMEL AA++
Sbjct: 8 MTTNHGLVIAAATDGACSGNPGPGGWGALIRFEDGTTKEFGGFEQQTTNNRMELQAALEI 67
Query: 60 LTALKY---PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ LK ++ + TDS Y+ G +WI W++ GWKTS K + ++
Sbjct: 68 MRRLKDLPLHPRLTIRTDSKYLIDGLGKWIIGWKKKGWKTSSGKP-VLNKDLWETLDKER 126
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
V L ++KGH+G+ +N++VD+IA
Sbjct: 127 LTGVSLEYVKGHSGDHDNDRVDKIAV 152
>gi|225555483|gb|EEH03775.1| RNase H domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 432
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + + TN R EL A I+AL
Sbjct: 243 LKIYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W WQ+N W T+ K V+N DL + + K
Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
W++GH+ + NE DR+A N A +
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGAKN 390
>gi|154287076|ref|XP_001544333.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407974|gb|EDN03515.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 432
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + + TN R EL A I+AL
Sbjct: 243 LKIYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W WQ+N W T+ K V+N DL + + K
Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
W++GH+ + NE DR+A N A +
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGAKN 390
>gi|325094793|gb|EGC48103.1| RNase H domain-containing protein [Ajellomyces capsulatus H88]
Length = 429
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + + TN R EL A I+AL
Sbjct: 243 LKIYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W WQ+N W T+ K V+N DL + + K
Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
W++GH+ N NE DR+A N A +
Sbjct: 363 TLFEWVRGHSQNPGNEAADRLAVNGAKN 390
>gi|87123514|ref|ZP_01079365.1| possible ribonuclease HI [Synechococcus sp. RS9917]
gi|86169234|gb|EAQ70490.1| possible ribonuclease HI [Synechococcus sp. RS9917]
Length = 162
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELM---AAIKALTA 62
R V TDGACSGNPGPGGWGVL+R+ G + G + TTNNRMEL AA++ L
Sbjct: 12 RVVAVATDGACSGNPGPGGWGVLIRFEDGSVEEFGGFDPATTNNRMELQAALAALERLKD 71
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + L TDS Y+ G W+ W++ GWKT+ K K ++++ V L
Sbjct: 72 LPRHPDLTLRTDSKYLIDGLGSWMAGWKRKGWKTAAGKP-VLNQDLWKALDSARLADVPL 130
Query: 123 YWIKGHAGNQENEKVDRIARN 143
++KGH+G+ +N++VD+IA
Sbjct: 131 RYVKGHSGDPDNDRVDQIAVA 151
>gi|325171021|ref|YP_004250996.1| ribonuclease H [Vibrio phage ICP1]
gi|323512416|gb|ADX87871.1| ribonuclease H [Vibrio phage ICP1]
gi|323512644|gb|ADX88098.1| putative ribonuclease HI [Vibrio phage ICP1_2006_D]
gi|323512872|gb|ADX88325.1| putative ribonuclease HI [Vibrio phage ICP1_2006_C]
gi|323513100|gb|ADX88552.1| putative ribonuclease HI [Vibrio phage ICP1_2006_B]
gi|323513327|gb|ADX88778.1| putative ribonuclease HI [Vibrio phage ICP1_2006_A]
gi|323513554|gb|ADX89004.1| putative ribonuclease HI [Vibrio phage ICP1_2005_A]
gi|323513787|gb|ADX89236.1| putative ribonuclease HI [Vibrio phage ICP1_2001_A]
gi|323514015|gb|ADX89463.1| putative ribonuclease HI [Vibrio phage ICP1_2004_A]
Length = 155
Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 9 VHAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDG+ G GG GV+L+YKG K +S + TNN E+ A I L +LK
Sbjct: 2 VEIWTDGSSIKYDGKWFGGSGVILQYKGTIKHLSETLPDYTNNMSEIYAMILGLESLKRR 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C V ++TDS Y + + WI KW++NGWKT+ VKN +L ++ + QH V +K
Sbjct: 62 CDVTIFTDSKYSLQCVTDWIPKWKRNGWKTAGGSIVKNKELIVRLYDLCQQHNVKFIKVK 121
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
H+G NEKVDR+A AA K +
Sbjct: 122 AHSGIDLNEKVDRLAYEAATKGKEE 146
>gi|26352958|dbj|BAC40109.1| unnamed protein product [Mus musculus]
Length = 153
Score = 97.6 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL- 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 6 SVIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAK 65
Query: 64 -KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGW+TS K V N + +M+ E + +
Sbjct: 66 AQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQW 125
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
I GH+G NE+ DR+AR A ++
Sbjct: 126 MHIPGHSGFVGNEEADRLAREGAKQSED 153
>gi|50540386|ref|NP_001002659.1| ribonuclease H1 [Danio rerio]
gi|49900309|gb|AAH76457.1| Ribonuclease H1 [Danio rerio]
gi|55251105|emb|CAH68963.1| novel protein similar to vertebrate ribonuclease H1 (RNASEH1)
[Danio rerio]
gi|182891492|gb|AAI64625.1| Rnaseh1 protein [Danio rerio]
Length = 276
Score = 97.2 bits (240), Expect = 6e-19, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CSGN G GV + TN R EL AA KAL
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKE 189
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KV+LYTDS + G + W+K W+ NGW+ + N D + + + +A+ V
Sbjct: 190 MNFKKVVLYTDSKFTINGVTSWVKTWKSNGWRLKSGGVIINKDDFQQLDKLNAELDVVWM 249
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
I GHAG NE+ DR++R A
Sbjct: 250 HIPGHAGYTGNEEADRLSREGAAK 273
>gi|85705651|ref|ZP_01036748.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Roseovarius sp. 217]
gi|85669641|gb|EAQ24505.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Roseovarius sp. 217]
Length = 161
Score = 97.2 bits (240), Expect = 6e-19, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
AYTDG+C NPGPGG L G+ S ETTNN+ E+ A I ALTA+
Sbjct: 15 VAYTDGSCKDNPGPGGCAFRLYAPDGQIIEKSRQSLETTNNKAEMWAVIDALTAIPEDAP 74
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
VL+ DS Y+ G Q ++ W W+ ++ + V+N +LW K + A +V + IK H
Sbjct: 75 VLVCLDSGYIKDGIEQHLEGWLSRDWRKTNGQEVRNRELWEKIIALMATREVTFHKIKAH 134
Query: 129 AGNQENEKVDRIARNAAVSFKNKI 152
+G+ +NE VD +A AA K+
Sbjct: 135 SGDPDNEHVDAMAGKAADKAARKV 158
>gi|193788502|dbj|BAG53396.1| unnamed protein product [Homo sapiens]
Length = 169
Score = 97.2 bits (240), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 23 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 82
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 83 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 142
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 143 HVPGHSGFIGNEEADRLAREGAKQSED 169
>gi|296454827|ref|YP_003661971.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
gi|296184259|gb|ADH01141.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
Length = 382
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 4 KHLREVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEK-IISGGEKETTNNRME 52
+++ + TDG+ GNP GP GW +K + +GG TN E
Sbjct: 85 ENM-TITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGE 143
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L A ++AL A P +L+ +DS Y ++W+K W++NGWK S KK VKN +L
Sbjct: 144 LCAVLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAID 203
Query: 113 EASAQHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+Q VD W+KGHAGN+ NE VD +AR A ++
Sbjct: 204 REISQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRS 243
>gi|23466173|ref|NP_696776.1| ribonuclease H [Bifidobacterium longum NCC2705]
gi|23326912|gb|AAN25412.1| ribonuclease H [Bifidobacterium longum NCC2705]
Length = 328
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 4 KHLREVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEK-IISGGEKETTNNRME 52
+++ + TDG+ GNP GP GW +K + +GG TN E
Sbjct: 31 ENM-TITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGE 89
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L A ++AL A P +L+ +DS Y ++W+K W++NGWK S KK VKN +L
Sbjct: 90 LCAVLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAID 149
Query: 113 EASAQHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+Q VD W+KGHAGN+ NE VD +AR A ++
Sbjct: 150 REISQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRS 189
>gi|328473179|gb|EGF44027.1| ribonuclease H [Vibrio parahaemolyticus 10329]
Length = 155
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI---KALTALKY 65
++AYTDG+C GGW +L KE SG E++TT+NRMEL AAI + +
Sbjct: 13 INAYTDGSCITQKCLGGWAFILTRADKELERSGHERKTTSNRMELTAAIKALEVIYKKYP 72
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ ++TDS YV G + WI+ W++NGW+ SD+K V N DLW K E + V W+
Sbjct: 73 NNPITVHTDSQYVKNGITTWIRCWKRNGWRRSDRKPVLNADLWQKLDELNESMNVSWEWV 132
Query: 126 KGHAGNQENEKVDRIARNAA 145
K H G+ NE+V +A +A
Sbjct: 133 KAHNGHPLNERVHMLAYSAI 152
>gi|218667057|ref|YP_002425636.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519270|gb|ACK79856.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 145
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 6 LREVHAYTDGACSG-NPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + + DGAC+ NPGP WG ++ G+ + + TNN EL AAI++L
Sbjct: 1 MSQWKIWCDGACAPTNPGPCAWGAVIESPDGGRMEHCGFIQPMGTNNIAELTAAIESLRK 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ +V+L +DS Y KG +W+ W + GW+T+ V N +LW + A KV L
Sbjct: 61 VPAGAQVVLCSDSQYTLKGLGEWLPGWIRKGWRTASGSPVLNKELWQALHQEYAARKVKL 120
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
W++GH G+ ENE DR+A
Sbjct: 121 EWVRGHNGHPENELADRLANRG 142
>gi|158423153|ref|YP_001524445.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
gi|158330042|dbj|BAF87527.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
Length = 186
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 10 HAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
Y DG+ NPGP GW V ++ G + +G E TNN+MEL AAI+AL L
Sbjct: 26 VVYADGSSLQNPGPAGWAVLVIPPHGGPQTFAGSEPWATNNQMELRAAIEALNVLPMDAA 85
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
++ DS YV KG S W W++ GW+ S + V N DLW S V W++G
Sbjct: 86 GVIRCDSEYVVKGVSDWRSGWERRGWRNSKGQPVANADLWRTLYRLSDDRPGVRFAWVRG 145
Query: 128 HAGNQENEKVDRI 140
HAG+ NE D +
Sbjct: 146 HAGDPGNELADML 158
>gi|226308667|ref|YP_002768627.1| ribonuclease HI [Rhodococcus erythropolis PR4]
gi|226187784|dbj|BAH35888.1| ribonuclease HI [Rhodococcus erythropolis PR4]
Length = 183
Score = 97.2 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + +SGGE TN EL A +A+ A
Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSMSGGEASGTNQIAELRALFEAVVAHPGAD 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN++L A V W+
Sbjct: 59 PLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVRFRWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH GN NE D++A AA +
Sbjct: 119 RGHVGNHYNEMADKLAGEAARAI 141
>gi|148233804|ref|NP_001090055.1| ribonuclease H1 [Xenopus laevis]
gi|66911791|gb|AAH97857.1| MGC115609 protein [Xenopus laevis]
Length = 292
Score = 96.8 bits (239), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALK 64
YTDG CS N G GV + E TN R E+ AA + K
Sbjct: 146 VVYTDGCCSQNGRLKAQAGIGVYWGPGHPLNLAERLEGRQTNQRAEIQAACRALEQAQAK 205
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K++LYTDS + G ++WI W++ GWK S+ + V N + + K + + ++
Sbjct: 206 NITKLVLYTDSMFTINGITKWIHSWKRKGWKLSNGQNVINREDFEKLDKLTRGLDINWMH 265
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
I GHAG + NE D+++R A ++
Sbjct: 266 IPGHAGFEGNEAADKLSREGAQKSSDQ 292
>gi|229488947|ref|ZP_04382813.1| ribonuclease HI [Rhodococcus erythropolis SK121]
gi|229324451|gb|EEN90206.1| ribonuclease HI [Rhodococcus erythropolis SK121]
Length = 193
Score = 96.8 bits (239), Expect = 8e-19, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + +SGGE TN EL A +A+ A
Sbjct: 12 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSMSGGEASGTNQIAELRALFEAVVAHPGAD 68
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN++L A V W+
Sbjct: 69 PLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVRFRWV 128
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+GH GN NE D++A AA +
Sbjct: 129 RGHVGNHYNEMADKLAGEAARAI 151
>gi|145238804|ref|XP_001392049.1| RNase H domain protein [Aspergillus niger CBS 513.88]
gi|134076548|emb|CAK39740.1| unnamed protein product [Aspergillus niger]
Length = 410
Score = 96.8 bits (239), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R EL A ++AL
Sbjct: 236 LRIYTDGSSLKNGKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRALDIAP 295
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W KW++N W T+ K V N DL + + K
Sbjct: 296 RHRDVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEERNELKVK 355
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH+ + NE DR+A + A
Sbjct: 356 TLFEWVKGHSSHPGNEAADRLAVSGAR 382
>gi|332024086|gb|EGI64303.1| Ribonuclease H1 [Acromyrmex echinatior]
Length = 292
Score = 96.8 bits (239), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V+ +TDGACS N G GV R I TNN E+ A A+ K
Sbjct: 146 VNVFTDGACSSNGYKNARAGIGVWFRDNHPLNISEPVNGRPTNNMAEIQAVTVAVRQAKK 205
Query: 66 --PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ +QW+ W++ WKT D K V N ++ + V
Sbjct: 206 AGIKKLKINTDSKFLISCITQWMPAWKRREWKTVDNKPVINKTELLEMEKELENLTVAWN 265
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GHAG NE D++AR + +KN
Sbjct: 266 HVNGHAGIHGNEMADKLAREGCLRYKN 292
>gi|291441333|ref|ZP_06580723.1| ribonuclease H [Streptomyces ghanaensis ATCC 14672]
gi|291344228|gb|EFE71184.1| ribonuclease H [Streptomyces ghanaensis ATCC 14672]
Length = 235
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 5 HLRE-VHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT 61
+RE V A DGAC GNPGP GW ++ + +G TNN EL A + L
Sbjct: 4 RMRERVVAACDGACKGNPGPAGWAWVVADASETPVHWEAGALGRATNNVAELTALERLLA 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + + DS Y K + W+ W++NGW+T+ K V N +L ++ V+
Sbjct: 64 STDPAVPLEVRMDSQYAMKAVTTWLPGWKRNGWRTAAGKPVANQELVVRIDALLQDRSVE 123
Query: 122 LYWIKGHA--GNQENEKVDRIARNAAVSFKN 150
++ H G++ N+ DR A AA + +N
Sbjct: 124 FRYVPAHQVDGDRLNDFADRAASQAATTQQN 154
>gi|148243453|ref|YP_001228610.1| ribonuclease H [Synechococcus sp. RCC307]
gi|147851763|emb|CAK29257.1| Ribonuclease H [Synechococcus sp. RCC307]
Length = 247
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRME---LMAAIKALTALK 64
V A DGAC GNPGPGGWG LLR+ G E +TTNNRME +A ++ L L
Sbjct: 16 VAAACDGACRGNPGPGGWGALLRFSDGRVEELGGSEAQTTNNRMELSACLALLERLQQLP 75
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + TDS Y+ GF++WI W++ GW+T+ + + ++A+ V L
Sbjct: 76 RAQGLAIRTDSKYLIDGFTRWINGWKRKGWRTAS-GSAVLNRDLWEALDAARLPDVALAH 134
Query: 125 IKGHAGNQENEKVDRIARN 143
+KGH+G+ +NE+ D IA
Sbjct: 135 VKGHSGDPDNERCDAIAVA 153
>gi|239621516|ref|ZP_04664547.1| ribonuclease H [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|239515391|gb|EEQ55258.1| ribonuclease H [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 345
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 4 KHLREVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEK-IISGGEKETTNNRME 52
+++ + TDG+ GNP GP GW +K + +GG TN E
Sbjct: 48 ENM-TITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGE 106
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L A ++AL A P +L+ +DS Y ++W+K W++NGWK S KK VKN +L
Sbjct: 107 LCAVLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAID 166
Query: 113 EASAQHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+Q VD W+KGHAGN+ NE VD +AR A ++
Sbjct: 167 REISQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRS 206
>gi|83815014|ref|YP_445237.1| ribonuclease H [Salinibacter ruber DSM 13855]
gi|83756408|gb|ABC44521.1| ribonuclease H [Salinibacter ruber DSM 13855]
Length = 307
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
TDGAC NPGPGGW ++ + G+ + I G +TTNNRMEL A +AL+ + +V
Sbjct: 172 ISTDGACISNPGPGGWAAVIVHDGEVRRIMGRVDDTTNNRMELWAIGEALSEIPSDSEVE 231
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ +DS Y K S + + +H+V+ ++GH+G
Sbjct: 232 IRSDSRYAIKIASGEWNASENRALVEA-------------VRRQVDRHEVEWTKVEGHSG 278
Query: 131 NQENEKVDRIARNAAVSF 148
+ ENE+ D +A A F
Sbjct: 279 DPENEEADDLAEAAVRGF 296
>gi|326774041|ref|ZP_08233323.1| ribonuclease H (RNase H) [Actinomyces viscosus C505]
gi|326636180|gb|EGE37084.1| ribonuclease H (RNase H) [Actinomyces viscosus C505]
Length = 391
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + A DG+ GNPGP GW + +GG + +TNNR EL A ++ L
Sbjct: 1 MGRVPSMTLTAAADGSSLGNPGPAGWAWYVDDDC---WAAGGWESSTNNRGELTAVLELL 57
Query: 61 TALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
A + ++L+ DS YV ++W W++ GW+ +D K V N DL A A
Sbjct: 58 RATEAAGLAGEELLIQCDSQYVINSLTKWRHGWKKRGWRKADGKPVLNSDLVKDLDAALA 117
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
V W++GH G+ NE D AR
Sbjct: 118 GRTVRFEWVRGHVGHPMNEAADSRAR 143
>gi|320533318|ref|ZP_08034014.1| ribonuclease HI [Actinomyces sp. oral taxon 171 str. F0337]
gi|320134467|gb|EFW26719.1| ribonuclease HI [Actinomyces sp. oral taxon 171 str. F0337]
Length = 188
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + +GG + +TNNR EL A ++ L A +
Sbjct: 2 TLTAAADGSSLGNPGPAGWAWYVDDDC---WAAGGWESSTNNRGELTAVLELLRATEAAG 58
Query: 68 ----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++L+ DS YV ++W W++ GW+ +D K V N DL A A V
Sbjct: 59 LAGEELLIQCDSQYVINSLTKWRHGWKKRGWRKADGKPVLNADLVKDLDAALAGRTVRFE 118
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFK 149
W++GH G+ NE D AR AA +F+
Sbjct: 119 WVRGHVGHPMNEAADSRARGAATAFQ 144
>gi|242807454|ref|XP_002484959.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
gi|218715584|gb|EED15006.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
Length = 419
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ GN G GV + + TN R EL A I+AL
Sbjct: 240 LRIYTDGSSLGNGKKIAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRALEIAP 299
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----- 119
V + TDS Y + W +KW +N W+TSD K V+N DL + ++
Sbjct: 300 RHRPVTIVTDSRYAIDCVTNWFRKWVRNNWQTSDGKPVENKDLIQSILVKISERDSLKVT 359
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A + A
Sbjct: 360 TTFEWVKGHNRDAGNEAADRLAVDGAR 386
>gi|329937611|ref|ZP_08287130.1| ribonuclease H [Streptomyces griseoaurantiacus M045]
gi|329303010|gb|EGG46898.1| ribonuclease H [Streptomyces griseoaurantiacus M045]
Length = 235
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIK 58
M L V A DGA GNPGP GW ++ + + +G + TNN EL A +
Sbjct: 1 MIGDMLERVVAACDGASKGNPGPAGWAWVVADDAEVPARWEAGPLGKATNNVAELTALER 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L+A+ + + DS Y ++W+ W++ GWKT+ K V N +L + A
Sbjct: 61 LLSAVDPEVPLEIRMDSQYAMNAVTKWLPGWKRKGWKTAAGKPVANQELVQRIDSLLAGR 120
Query: 119 KVDLYWIKGHA--GNQENEKVDRIARNAA 145
+V+ ++ H G++ N+ DR A AA
Sbjct: 121 EVEFRYVPAHQVDGDRLNDFADRAASQAA 149
>gi|262199557|ref|YP_003270766.1| ribonuclease H [Haliangium ochraceum DSM 14365]
gi|262082904|gb|ACY18873.1| ribonuclease H [Haliangium ochraceum DSM 14365]
Length = 215
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+ YTDGAC+GNPGP G G ++ + + IS E TNN EL+A +AL A+
Sbjct: 85 IIIYTDGACTGNPGPAGIGAVILDGEERREISEYLGEGTNNIAELVAIERALEAVAPEDA 144
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V++++DSSY S+ K + +A ++ +K
Sbjct: 145 RQVVVHSDSSYAIGLLSKGW------------KPKANVELVGRIRALTAAVRRLRFVKVK 192
Query: 127 GHAGNQENEKVDRIARNAAV 146
GHAG ENE+ D +AR+A
Sbjct: 193 GHAGIPENERCDELARDAIT 212
>gi|307149834|ref|YP_003890877.1| Ribonuclease H [Cyanothece sp. PCC 7822]
gi|306986634|gb|ADN18512.1| Ribonuclease H [Cyanothece sp. PCC 7822]
Length = 2448
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIK----ALT 61
+++ +TDG+ GN GPGGW ++ +G++ +G TTNNRMEL A I+
Sbjct: 2017 KKITLHTDGSSLGNLGPGGWAYVISDSEGQQLANNGAVPNTTNNRMELTAVIEGIKAVKE 2076
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K + + +DS YV K + +K + +F + S +
Sbjct: 2077 NYKDISDIHIVSDSQYVLKSINGEWQKKKNQDLW-------------EQFDKISQNINLT 2123
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+KGH G++ NE D +A +AA +
Sbjct: 2124 TEWVKGHDGHEFNELCDGLAHSAANDLQK 2152
>gi|317482175|ref|ZP_07941198.1| RNase H [Bifidobacterium sp. 12_1_47BFAA]
gi|316916409|gb|EFV37808.1| RNase H [Bifidobacterium sp. 12_1_47BFAA]
Length = 352
Score = 96.5 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 4 KHLREVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEK-IISGGEKETTNNRME 52
+++ + TDG+ GNP GP GW +K + +GG TN E
Sbjct: 55 ENM-TITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGE 113
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L A ++AL A P +L+ +DS Y ++W+K W++NGWK S KK VKN +L
Sbjct: 114 LCAVLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAID 173
Query: 113 EASAQHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+Q VD W+KGHAGN+ NE VD +AR A ++
Sbjct: 174 REISQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRS 213
>gi|88809797|ref|ZP_01125303.1| possible ribonuclease HI [Synechococcus sp. WH 7805]
gi|88786181|gb|EAR17342.1| possible ribonuclease HI [Synechococcus sp. WH 7805]
Length = 241
Score = 96.1 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELM---AAIKALTA 62
R V A TDGACSGNPGPGGWG L+R+ G + G E TTNNRMEL A ++ L
Sbjct: 9 RVVAAATDGACSGNPGPGGWGALIRFEDGSVEEFGGAEPATTNNRMELQAALAVLERLAG 68
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + L TDS Y+ G W+ W++ GWKT+ K + ++A+ V L
Sbjct: 69 LPRHPDLTLRTDSKYLIDGLGSWMAGWKRKGWKTAAGKP-VLNQDLWQALDAARLPDVPL 127
Query: 123 YWIKGHAGNQENEKVDRIARN 143
++KGH+G+ +N++VD IA
Sbjct: 128 TYVKGHSGDPDNDRVDAIAVA 148
>gi|94986068|ref|YP_605432.1| ribonuclease H [Deinococcus geothermalis DSM 11300]
gi|94556349|gb|ABF46263.1| ribonuclease H [Deinococcus geothermalis DSM 11300]
Length = 151
Score = 96.1 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/142 (45%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y+DGAC G GGW +LRY+GKE ++SG E++TTNNRMEL+ ++ L LK PC+
Sbjct: 8 VDLYSDGACDTAAGHGGWATILRYRGKELVLSGRERDTTNNRMELLGLLEGLKVLKRPCQ 67
Query: 69 VLLYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + TDS Y+ K F+ KWQ+NGWKT+ + VKN DLW + + + +H + W++G
Sbjct: 68 VRVVTDSQYLRKAFTDGWILKWQRNGWKTAGGEPVKNQDLWEELIAQAQRHALTFVWVRG 127
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H G+ ENE+VDR+A +
Sbjct: 128 HNGHGENERVDRLAVEERKKLR 149
>gi|28493206|ref|NP_787367.1| ribonuclease H [Tropheryma whipplei str. Twist]
gi|28572680|ref|NP_789460.1| ribonuclease H [Tropheryma whipplei TW08/27]
gi|81839141|sp|Q83GM3|RNH_TROWT RecName: Full=Ribonuclease H; Short=RNase H
gi|81839168|sp|Q83HK9|RNH_TROW8 RecName: Full=Ribonuclease H; Short=RNase H
gi|28410812|emb|CAD67198.1| ribonuclease HI [Tropheryma whipplei TW08/27]
gi|28476247|gb|AAO44336.1| ribonuclease H [Tropheryma whipplei str. Twist]
Length = 161
Score = 96.1 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
E+ A TDG+ NPGP GW + + SGG TNN EL A + L A +
Sbjct: 2 TNNEIIAATDGSSLANPGPSGWAWYV---DENTWDSGGWDIATNNIAELTAVRELLIATR 58
Query: 65 YPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ +L+ +DS YV ++W+ W+ W+ +D K V N ++ + + +
Sbjct: 59 HTDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMS 118
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+ H G+ NE D +AR AA +F +
Sbjct: 119 WVNAHTGHPLNEAADSLARQAANNFSTR 146
>gi|218778791|ref|YP_002430109.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01]
gi|218760175|gb|ACL02641.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01]
Length = 225
Score = 96.1 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ AYTDGA S NPGP G GVLL+YKG K IS ETTNN EL A + AL +K
Sbjct: 90 NAIIAYTDGASSHNPGPAGLGVLLKYKGHAKEISQYIGETTNNVAELSAILVALQNIKKR 149
Query: 67 C-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V ++TDS Y Q K E S + YW+
Sbjct: 150 ELPVRIFTDSKYSFGVLFQGWKAKANVELIAK------------IQNEISKFRDIKCYWV 197
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
KGHA N NE D++A +A + +N
Sbjct: 198 KGHADNPYNEIADKLATDAIKNHQN 222
>gi|312374134|gb|EFR21765.1| hypothetical protein AND_16414 [Anopheles darlingi]
Length = 735
Score = 96.1 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKG---KEKIISGGEKETTNNRMELMAAIKALTA 62
VH YTDG+C GN P G GV K +SG AI+
Sbjct: 543 VHVYTDGSCEGNGKPNAAAGLGVYFDEGHALNTSKPVSGRATNNCGEIQAASTAIRLARE 602
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA--QHKV 120
++ + TDS ++ +QW+ W+ W + VKN +M+ +
Sbjct: 603 QGVE-RLAINTDSKFLIDATTQWMPGWKNRDWTLASGGPVKNKADFMELDREMNTGNMSI 661
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ H+G NE+ D++AR + ++ +
Sbjct: 662 KWNHVDAHSGIVGNERADQLARKGSEMYREE 692
>gi|227821696|ref|YP_002825666.1| putative ribonuclease HI [Sinorhizobium fredii NGR234]
gi|227340695|gb|ACP24913.1| putative ribonuclease HI [Sinorhizobium fredii NGR234]
Length = 278
Score = 95.7 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-P 66
+H +TDGAC NPGPGGWGV + R + + GG +TTNNRMEL A +K + K
Sbjct: 107 LHVFTDGACEPNPGPGGWGVAVYRDRAEIASDHGGNADTTNNRMELTALLKGIEVAKALG 166
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKT-------SDKKTVKNIDLWMKFVEASAQHK 119
V++++DS Y G + W W++ WK +++ +
Sbjct: 167 APVVVWSDSRYCVDGCNDWRHGWKKKEWKKAGPKASAKNQEVKNVELWQAIDAALERADQ 226
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + W KGHAG NE+ D ++ S
Sbjct: 227 ITIRWCKGHAGIVGNERADELSNLGVASL 255
>gi|297242929|ref|ZP_06926867.1| ribonuclease HI [Gardnerella vaginalis AMD]
gi|296889140|gb|EFH27874.1| ribonuclease HI [Gardnerella vaginalis AMD]
Length = 368
Score = 95.7 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIK 58
+ TDG+ GNP G GW + +GG TN EL A ++
Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A + + +DS Y + WI W++NGWK S + VKN +L +
Sbjct: 78 ALRAHPGSEPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137
Query: 119 K--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ V W+KGHAGN+ NEKVD +AR A +N +
Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYAEDCRNGL 173
>gi|302549117|ref|ZP_07301459.1| ribonuclease HI [Streptomyces viridochromogenes DSM 40736]
gi|302466735|gb|EFL29828.1| ribonuclease HI [Streptomyces viridochromogenes DSM 40736]
Length = 233
Score = 95.7 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
M V A DGA GNPGP GW ++ + + +G + TNN EL A +
Sbjct: 1 MIEPMPERVVAACDGASKGNPGPAGWAWVVADASESPVRWEAGPLGKATNNVAELTALER 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
LTA + + DS Y K + W+ W++NGWKTS K V N DL ++ E
Sbjct: 61 LLTATDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTSGGKPVANQDLVVRIDELLDGR 120
Query: 119 KVDLYWIKGHA--GNQENEKVDRIARNAAV 146
V+ ++ H G++ N+ DR A AA
Sbjct: 121 SVEFRYVPAHQVDGDRLNDFADRAASQAAT 150
>gi|302556963|ref|ZP_07309305.1| ribonuclease HI (RNase HI) [Streptomyces griseoflavus Tu4000]
gi|302474581|gb|EFL37674.1| ribonuclease HI (RNase HI) [Streptomyces griseoflavus Tu4000]
Length = 232
Score = 95.7 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 6 LREVHAY-TDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+RE+ DGA GNPGP GW ++ + +G TNN EL A + L A
Sbjct: 1 MRELVVAACDGASKGNPGPAGWAWVVADASGTPVRWEAGALGTATNNIAELTALERLLAA 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + + DS Y K + W+ W++NGW+T+ K V N +L ++ E V+
Sbjct: 61 IDPAVPLEVRMDSQYAMKAVTTWLPGWKRNGWRTAAGKPVANQELVVRIDELLQGRPVEF 120
Query: 123 YWIKGHA--GNQENEKVDRIARNAAVSFKN 150
++ H G++ N+ DR A AA + ++
Sbjct: 121 RYVPAHQVDGDRLNDFADRAASRAATAQQD 150
>gi|238489999|ref|XP_002376237.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
gi|220698625|gb|EED54965.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
Length = 408
Score = 95.3 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + +S K TN R EL A ++AL
Sbjct: 236 LRIYTDGSSLKNGRALASAGVGVYFGPGDNSRNVSEPLKGSRQTNQRAELTAILRALDIA 295
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL---WMKFVEASAQHKV 120
V ++TDS Y K + W KWQ+N W TSD K V+N DL +E + KV
Sbjct: 296 PRHRDVTIFTDSQYAIKCVTVWYVKWQRNKWLTSDNKPVENKDLVESIRVKIEERDELKV 355
Query: 121 D--LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A N A
Sbjct: 356 KTLFEWVKGHNSDPGNEAADRLAVNGAQ 383
>gi|255948658|ref|XP_002565096.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592113|emb|CAP98437.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 95.3 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N P G GV + + TN R EL A ++A+
Sbjct: 224 LRIYTDGSSLRNGTPLASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAIDIAP 283
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V + TDS Y + W W++N W T DKK V+N DL + + K
Sbjct: 284 RHRDVTIITDSRYSIDCVTVWFINWRRNNWMTRDKKPVENKDLVESILVKIEERNDLKVK 343
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE+ D++A + A
Sbjct: 344 TLFEWVKGHNKDPGNEEADKLAVDGAQ 370
>gi|113955088|ref|YP_731910.1| ribonuclease H [Synechococcus sp. CC9311]
gi|113882439|gb|ABI47397.1| ribonuclease H [Synechococcus sp. CC9311]
Length = 250
Score = 95.3 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTA--- 62
R V A TDGACSGNPGPGGWG L+R+ G + G + TTNNRMEL AA+ L
Sbjct: 10 RVVAAATDGACSGNPGPGGWGALIRFEDGSVEEFGGADPATTNNRMELQAALATLQRLAE 69
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + L TDS Y+ G W+ W++ GW+T+ K + ++ + +V L
Sbjct: 70 LPLHPNLTLRTDSKYLIDGLGSWMAGWKRKGWRTAAGKP-VLNQDLWQALDQARLAEVPL 128
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNK 151
++KGH+G+ +N++VD+IA A + +
Sbjct: 129 SYVKGHSGDPDNDRVDQIAV-AYSKGRKQ 156
>gi|308271914|emb|CBX28522.1| Ribonuclease H [uncultured Desulfobacterium sp.]
Length = 227
Score = 95.3 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKALTALKYPC 67
+ YTDGA SGNPGP G GV R+ EK IS TNN EL A
Sbjct: 96 ICIYTDGASSGNPGPSGIGVYFRFGEHEKEISRYIGIATNNIAELEAIKTALTELKTTKK 155
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V ++TDSSY + + K + S V+ + + L +KG
Sbjct: 156 PVRIFTDSSYSYGVLTLNWKPKKNIELINS------------IKVKMKNFYDIKLIKVKG 203
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG +ENE D +A A +
Sbjct: 204 HAGYKENELADFLATRAVKNGSK 226
>gi|148240705|ref|YP_001226092.1| ribonuclease H [Synechococcus sp. WH 7803]
gi|147849244|emb|CAK24795.1| Ribonuclease H [Synechococcus sp. WH 7803]
Length = 240
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAA---IKALTA 62
R V A TDGACSGNPGPGGWG L+R+ G + G + TTNNRMEL AA ++ L
Sbjct: 9 RVVAAATDGACSGNPGPGGWGALIRFEDGSVEEFGGSDPATTNNRMELQAALSLLERLAE 68
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + L TDS Y+ G W+ W++ GWKT+ K + ++A+ V L
Sbjct: 69 LPRHPDLTLRTDSKYLIDGLGSWMAGWKRKGWKTAAGKP-VLNQDLWQALDAARLPDVPL 127
Query: 123 YWIKGHAGNQENEKVDRIARN 143
++KGH+G+ +N++VD IA
Sbjct: 128 TYVKGHSGDPDNDRVDAIAVA 148
>gi|297197426|ref|ZP_06914823.1| ribonuclease HI [Streptomyces sviceus ATCC 29083]
gi|197716274|gb|EDY60308.1| ribonuclease HI [Streptomyces sviceus ATCC 29083]
Length = 232
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 4 KHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKAL 60
+ +RE + A DGA GNPGP W ++ + + ++ +G + TNN EL A + L
Sbjct: 3 ERMRERLVAACDGASKGNPGPAAWAWVIADESETPDRWEAGPLGKATNNVAELTALERLL 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
TA + + DS Y K + W+ W++NGWKTS K V N DL ++ E V
Sbjct: 63 TATDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTSAGKPVANQDLVVRIDELLDGRSV 122
Query: 121 DLYWIKGHA--GNQENEKVDRIARNAA 145
+ ++ H G+ N+ DR A AA
Sbjct: 123 EFRYVPAHQVDGDPLNDFADRAASQAA 149
>gi|311064855|ref|YP_003971581.1| ribonuclease HI [Bifidobacterium bifidum PRL2010]
gi|310867175|gb|ADP36544.1| Rnh Ribonuclease HI [Bifidobacterium bifidum PRL2010]
Length = 359
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GW ++ +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W+ W++NGWK S KK VKN L ++
Sbjct: 62 EALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSR 121
Query: 118 H--KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++ +
Sbjct: 122 RAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGV 158
>gi|310287982|ref|YP_003939241.1| ribonuclease H [Bifidobacterium bifidum S17]
gi|309251919|gb|ADO53667.1| ribonuclease H [Bifidobacterium bifidum S17]
Length = 359
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GW ++ +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W+ W++NGWK S KK VKN L ++
Sbjct: 62 EALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSR 121
Query: 118 H--KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++ +
Sbjct: 122 RAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGV 158
>gi|224283751|ref|ZP_03647073.1| ribonuclease H [Bifidobacterium bifidum NCIMB 41171]
gi|313140907|ref|ZP_07803100.1| ribonuclease H [Bifidobacterium bifidum NCIMB 41171]
gi|313133417|gb|EFR51034.1| ribonuclease H [Bifidobacterium bifidum NCIMB 41171]
Length = 359
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ TDG+ GNP GP GW ++ +GG TN EL A +
Sbjct: 2 TITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVL 61
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL A +++ TDS Y ++W+ W++NGWK S KK VKN L ++
Sbjct: 62 EALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSR 121
Query: 118 H--KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V W+KGHAGN NEKVD +AR A ++ +
Sbjct: 122 RAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGV 158
>gi|229818200|ref|ZP_04448482.1| hypothetical protein BIFANG_03497 [Bifidobacterium angulatum DSM
20098]
gi|229784451|gb|EEP20565.1| hypothetical protein BIFANG_03497 [Bifidobacterium angulatum DSM
20098]
Length = 338
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLR----------YKGKEKIISGGEKETTNNRMELMAA 56
+ TDG+ GNP GP GW + + GG TN EL A
Sbjct: 2 TITISTDGSALGNPNGPMGWAWADHAKNAGGTEGHHHDERGYDHGGATNGTNQIGELCAV 61
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++AL A +L+ +DS Y ++W+K W++NGW+ S KK VKN++L A
Sbjct: 62 LEALRAHPGAEPLLIESDSQYAINCSTKWVKGWKRNGWRNSQKKPVKNVELIKAIDAEIA 121
Query: 117 QHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ + VD W+KGHAGN NE VD +AR A ++
Sbjct: 122 KREGPVDFRWVKGHAGNVGNELVDELARGYATDCRS 157
>gi|124024989|ref|YP_001014105.1| ribonuclease HI [Prochlorococcus marinus str. NATL1A]
gi|187611393|sp|A2C030|RNH_PROM1 RecName: Full=Ribonuclease H; Short=RNase H
gi|123960057|gb|ABM74840.1| Ribonuclease HI [Prochlorococcus marinus str. NATL1A]
Length = 161
Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMA---A 56
M + + A TDGACSGNPGPGGWG L+R+ G E G ETTNNRMEL A
Sbjct: 1 MSKEEKLAIAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSPETTNNRMELQAALFI 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++ L +++ + + TDS Y+ G +W+ W++ GWKT+ K K ++
Sbjct: 61 LEKLKNIEFAPSLTIKTDSKYLIDGMEKWMPNWKKKGWKTASGKP-VLNQDLWKALDHPE 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
K+ L ++KGH+G ++N++VD IA + K ++
Sbjct: 120 LPKIKLQYVKGHSGEKDNDRVDAIAVAFSKGRKIQL 155
>gi|259484645|tpe|CBF81045.1| TPA: ribonuclease H, putative (AFU_orthologue; AFUA_1G07180)
[Aspergillus nidulans FGSC A4]
Length = 463
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + +S K TN R EL A ++AL
Sbjct: 280 LRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRALDIA 339
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----- 118
V + TDS Y + W +KW+ N W T+DKK V+N DL + +
Sbjct: 340 PRHRDVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDERTELRV 399
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
K W+KGH + NE DR+A N A
Sbjct: 400 KTLFEWVKGHDADPGNEAADRLAVNGAQ 427
>gi|169764014|ref|XP_001727907.1| RNase H domain protein [Aspergillus oryzae RIB40]
gi|83770935|dbj|BAE61068.1| unnamed protein product [Aspergillus oryzae]
Length = 407
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R EL A ++AL
Sbjct: 236 LRIYTDGSSLKNGRALASAGVGVYFGPGDNRNVSEPLKGSRQTNQRAELTAILRALDIAP 295
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL---WMKFVEASAQHKVD 121
V ++TDS Y K + W KWQ+N W TSD K V+N DL +E + KV
Sbjct: 296 RHRDVTIFTDSQYAIKCVTVWYVKWQRNKWLTSDNKPVENKDLVESIRVKIEERDELKVK 355
Query: 122 --LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A N A
Sbjct: 356 TLFEWVKGHNSDPGNEAADRLAVNGAQ 382
>gi|67538036|ref|XP_662792.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
gi|40743179|gb|EAA62369.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
Length = 411
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + +S K TN R EL A ++AL
Sbjct: 228 LRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRALDIA 287
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----- 118
V + TDS Y + W +KW+ N W T+DKK V+N DL + +
Sbjct: 288 PRHRDVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDERTELRV 347
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
K W+KGH + NE DR+A N A
Sbjct: 348 KTLFEWVKGHDADPGNEAADRLAVNGAQ 375
>gi|283782798|ref|YP_003373552.1| ribonuclease HI [Gardnerella vaginalis 409-05]
gi|283441102|gb|ADB13568.1| ribonuclease HI [Gardnerella vaginalis 409-05]
Length = 361
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIK 58
+ TDG+ GNP G GW + +GG TN EL A ++
Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A + + +DS Y + WI W++NGWK S + VKN +L +
Sbjct: 78 ALRAHPGREPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137
Query: 119 K--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ V W+KGHAGN+ NEKVD +AR A +N +
Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYAEDCRNGL 173
>gi|298253277|ref|ZP_06977069.1| ribonuclease HI [Gardnerella vaginalis 5-1]
gi|297532672|gb|EFH71558.1| ribonuclease HI [Gardnerella vaginalis 5-1]
Length = 361
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIK 58
+ TDG+ GNP G GW + +GG TN EL A ++
Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A + + +DS Y + WI W++NGWK S + VKN +L +
Sbjct: 78 ALRAHPGREPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137
Query: 119 K--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ V W+KGHAGN+ NEKVD +AR A +N +
Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYAEDCRNGL 173
>gi|254471907|ref|ZP_05085308.1| RNase H [Pseudovibrio sp. JE062]
gi|211959109|gb|EEA94308.1| RNase H [Pseudovibrio sp. JE062]
Length = 125
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/122 (52%), Positives = 83/122 (68%)
Query: 29 LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKK 88
LLR+ EK + GGE TTNNRMELMAAI+AL LK PC V LYTDSSYV G +QW+
Sbjct: 2 LLRFGEHEKELCGGESATTNNRMELMAAIQALETLKRPCAVDLYTDSSYVKNGITQWMHN 61
Query: 89 WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
W++ GW+T+ VKN DLW + A+ +H V +W+KGHAG++ENE+ D +AR F
Sbjct: 62 WKRKGWRTASNSPVKNADLWQQLDSAAQRHDVSWHWVKGHAGHEENERADELARKGMKPF 121
Query: 149 KN 150
+
Sbjct: 122 QK 123
>gi|32490817|ref|NP_871071.1| hypothetical protein WGLp068 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173148|sp|Q8D3D3|RNH_WIGBR RecName: Full=Ribonuclease H; Short=RNase H
gi|25166023|dbj|BAC24214.1| rnhA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 157
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/141 (46%), Positives = 96/141 (68%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ + DGAC GNPGPGG+GV++ K K IS G TTNNRME+MAAI AL +L
Sbjct: 3 KKIKIFIDGACLGNPGPGGYGVIICGKKLYKEISNGYYLTTNNRMEIMAAIIALESLHDM 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++ TDS Y+ G ++WIK W+ N WKT++ K+VKNIDLW+K S +H ++ WIK
Sbjct: 63 YNIIINTDSKYLKNGITKWIKVWKNNKWKTNNNKSVKNIDLWIKLEYLSKKHFINWNWIK 122
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH N ++++ D +A+ +A +
Sbjct: 123 GHTNNIKHDRCDFLAKISAKN 143
>gi|256827085|ref|YP_003151044.1| RNase HI [Cryptobacterium curtum DSM 15641]
gi|256583228|gb|ACU94362.1| RNase HI [Cryptobacterium curtum DSM 15641]
Length = 150
Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ V Y DG C GN G GGWG L + K + GGE+ TTNN+MEL I+ L A+
Sbjct: 3 QRVQLYCDGGCRGNQGKVNIGGWGSYLIWGSHTKELFGGERNTTNNKMELTGCIEGLRAI 62
Query: 64 KYPCK-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVD 121
K V +Y DS+YV+ G S WI W + W S K+ V N DLW++ + E + +
Sbjct: 63 KNKSVGVDVYLDSAYVYNGISTWIYGWMKKNWVNSKKEPVANKDLWLELLAEREKFNDIT 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+KGHA N N K D +A A
Sbjct: 123 FNKVKGHADNVGNIKADELANRAMDE 148
>gi|111019266|ref|YP_702238.1| ribonuclease H [Rhodococcus jostii RHA1]
gi|110818796|gb|ABG94080.1| probable ribonuclease H [Rhodococcus jostii RHA1]
Length = 177
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + SGGE TN EL A ++A+TA
Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSQSGGEPSGTNQIAELRALLEAITAHPGED 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN+ L A ++ V W+
Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLTLVQSIDRAISERPGPVRFRWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH GN NE D +A AA +
Sbjct: 119 RGHVGNHYNEMADVLAGEAARA 140
>gi|189233976|ref|XP_001810667.1| PREDICTED: similar to GA21286-PA [Tribolium castaneum]
gi|270014569|gb|EFA11017.1| hypothetical protein TcasGA2_TC004604 [Tribolium castaneum]
Length = 231
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+H V YTDGAC N G GV + + + TNN E+ A I A
Sbjct: 78 SRHGDYVTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICA 137
Query: 60 LTALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASA 116
+ + K+ + TDS + ++WIK W++N WK S K VKN + + +
Sbjct: 138 VQIARDNGIKKLQIITDSQFTINAMTKWIKSWKKNNWKLSSSKNPVKNKTDFQELDKLCE 197
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V + GH+G + NE D +AR A +
Sbjct: 198 GLDVQWQHVAGHSGIKGNECADMLAREGAKLY 229
>gi|325673034|ref|ZP_08152728.1| ribonuclease H [Rhodococcus equi ATCC 33707]
gi|325556287|gb|EGD25955.1| ribonuclease H [Rhodococcus equi ATCC 33707]
Length = 184
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + SGG TN EL A ++A+ A P
Sbjct: 2 IIVSTDGSCLKNPGGAIGWAWV---DHEGPSRSGGAVSGTNQIAELWALVEAIVAHPGPE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN++L A + V W+
Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTASGGPVKNLELVQDIDRAITERSGPVRFRWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH GN NE D++A AA +
Sbjct: 119 RGHVGNHFNEIADKLAGEAARA 140
>gi|295395280|ref|ZP_06805484.1| ribonuclease HI [Brevibacterium mcbrellneri ATCC 49030]
gi|294971831|gb|EFG47702.1| ribonuclease HI [Brevibacterium mcbrellneri ATCC 49030]
Length = 215
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ DG+ GNPGP GW ++ E+ +GG +E+TNNR EL A I+ L A +
Sbjct: 2 LEVACDGSALGNPGPAGWAWVIDD---ERWAAGGWEESTNNRAELQAVIEILKATAHTHE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-----QHKVDL 122
+L+ DS YV ++W+ W+ GWK ++ + V N DL + E +
Sbjct: 59 DILILADSKYVINSVTKWMPVWRLKGWKKANGQDVLNRDLMEELWEQVDALEKSGRTLKF 118
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+KGH+ ++ NE D+ AR A + ++K
Sbjct: 119 QWVKGHSNHELNETADQRARAVATAIRDK 147
>gi|72383403|ref|YP_292758.1| ribonuclease HI [Prochlorococcus marinus str. NATL2A]
gi|123620466|sp|Q46HH3|RNH_PROMT RecName: Full=Ribonuclease H; Short=RNase H
gi|72003253|gb|AAZ59055.1| possible ribonuclease HI [Prochlorococcus marinus str. NATL2A]
Length = 161
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMA---A 56
M + + A TDGACSGNPGPGGWG L+R+ G E G ETTNNRMEL A
Sbjct: 1 MSKEEKLAIAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSPETTNNRMELQAALFI 60
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++ L +K+ + + TDS Y+ G +W+ W++ GWKT+ K K ++
Sbjct: 61 LEKLKNIKFAPSLTIKTDSKYLIDGMDKWMPNWKKKGWKTASGKP-VLNQDLWKALDHPE 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
K+ L ++KGH+G ++N++VD IA + K ++
Sbjct: 120 LPKIKLQYVKGHSGEKDNDRVDAIAVAFSKGRKIQL 155
>gi|315044951|ref|XP_003171851.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
gi|311344194|gb|EFR03397.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
Length = 434
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Query: 1 MDSKH---LREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK--ETTNNRME 52
M K + YTDG+ N G GV + + +S TN R E
Sbjct: 245 MQPKPSGPPGMLKIYTDGSALRNGTSRARAGVGVYFGPGDESRNVSEPLAGSRQTNQRAE 304
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L A +AL V ++TDS Y + W WQ+N W TS +K V+N DL +
Sbjct: 305 LTAISRALDIAPKHRDVTIFTDSKYSIDCVTVWCINWQRNNWVTSAQKPVENKDLIQSIL 364
Query: 113 EASAQH-----KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ K W+KGH N NE DR+A N A
Sbjct: 365 AKIEERNSLKVKTLFEWVKGHNKNAGNEAADRLAVNGAN 403
>gi|312141706|ref|YP_004009042.1| ribonuclease h [Rhodococcus equi 103S]
gi|311891045|emb|CBH50364.1| putative ribonuclease H [Rhodococcus equi 103S]
Length = 184
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + SGG TN EL A ++A+ A P
Sbjct: 2 IIVSTDGSCLKNPGGAIGWAWV---DHEGPSRSGGAVSGTNQIAELWALVEAIVAHPGPE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN++L A + V W+
Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTASGGPVKNLELVQDIDRAITERSGPVRFRWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH GN NE D++A AA +
Sbjct: 119 RGHVGNHFNEIADKLAGEAARA 140
>gi|213693043|ref|YP_002323629.1| ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213524504|gb|ACJ53251.1| ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 296
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY----------KGKEKIISGGEKETTNNRMELMAA 56
+ TDG+ GNP GP GW +GG TN EL A
Sbjct: 2 TITVSTDGSALGNPNGPMGWAWADHEPNTGGKPGHKHDDHGYDAGGATNGTNQIGELCAV 61
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++AL A P +L+ +DS Y ++W+K W++NGW+ S KK VKN +L +
Sbjct: 62 LEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWRNSQKKPVKNKELIQAIDREIS 121
Query: 117 QHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
Q VD W+KGHAGN+ NE VD +AR A ++
Sbjct: 122 QRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRS 157
>gi|302697371|ref|XP_003038364.1| hypothetical protein SCHCODRAFT_47645 [Schizophyllum commune H4-8]
gi|300112061|gb|EFJ03462.1| hypothetical protein SCHCODRAFT_47645 [Schizophyllum commune H4-8]
Length = 266
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAA--IKALTALK 64
YTDGACSGN PG G GV + + + TNNR EL+A + K
Sbjct: 122 VVYTDGACSGNGRPGSLAGVGVWYGVGDERNMSERCPGDQTNNRAELIAIARVLETFPYK 181
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-----EASAQHK 119
+ + TDS Y + F WI W+ GW+ ++ + V N+ L + HK
Sbjct: 182 RDRPLKIMTDSKYSIQCFRDWIPNWRNRGWRKANGEPVLNVGLIKYIDSLLEFRSRLGHK 241
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V L ++GH+G NE DR+A
Sbjct: 242 VRLEHVRGHSGVPGNEGADRLAVAG 266
>gi|294677462|ref|YP_003578077.1| ribonuclease H [Rhodobacter capsulatus SB 1003]
gi|294476282|gb|ADE85670.1| ribonuclease H-1 [Rhodobacter capsulatus SB 1003]
Length = 180
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-----SGGEKETTNNRMELMAAIKALTAL 63
+ YTDG+C NPG GG+ +L + I G +++TTNN ME+ AA++AL +
Sbjct: 21 IIVYTDGSCQPNPGRGGYAAILCRYRDGREIKRAHIYGCKQQTTNNEMEMRAAVEALKLI 80
Query: 64 KYPCKV--LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ K+ + +DS Y+ G ++W+ W GW+ +D K +N+ LW + VE V
Sbjct: 81 RKGEKMPAFIRSDSKYLIDGKNEWLPGWITKGWRKADGKEPENVALWREIVELCDGLDVT 140
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W++GH+ ++ N + D++A K ++
Sbjct: 141 FEWVRGHSDDRMNAEADQLAAKGRAQRKPRV 171
>gi|291220697|ref|XP_002730361.1| PREDICTED: ribonuclease H1-like [Saccoglossus kowalevskii]
Length = 309
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
V YTDG C+ N G G GV I + TN R E+ AA +AL
Sbjct: 162 DRVAVYTDGCCTSNGRRGARAGLGVYWGPCHPRNISERVDGRQTNQRAEIKAASRALECA 221
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +YTDS + +QWI W++N WKT V N + ++ Q V
Sbjct: 222 IEMNIKSITIYTDSMFTINCITQWIHNWKRNNWKTKS-GVVVNKEEIVELDALCKQIDVK 280
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ GH+ NE+ D++A+ A
Sbjct: 281 WVHVPGHSNIHGNEEADKLAKAGA 304
>gi|210134868|ref|YP_002301307.1| ribonuclease H [Helicobacter pylori P12]
gi|210132836|gb|ACJ07827.1| ribonuclease H [Helicobacter pylori P12]
Length = 188
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 18 SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSY 77
GNPGPGG+ +LRYK KEKIISGGE TTNNRMEL A +AL LK PC + LY+DS Y
Sbjct: 58 LGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKILKRPCHITLYSDSQY 117
Query: 78 VHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKV 137
V + + W+ WQ + VKN+DLW +F++ S H + WIKGH G+ ENE+
Sbjct: 118 VCQAINVWLANWQ-----KKNFSKVKNVDLWKEFLKVSKGHLIVAVWIKGHNGHAENERC 172
Query: 138 DRIARNAAVS 147
D +A+ A
Sbjct: 173 DNLAKLEAQK 182
>gi|17137476|ref|NP_477315.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|7304133|gb|AAF59170.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|19527995|gb|AAL90112.1| AT19436p [Drosophila melanogaster]
gi|220949756|gb|ACL87421.1| rnh1-PA [synthetic construct]
gi|220958970|gb|ACL92028.1| rnh1-PA [synthetic construct]
Length = 333
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG+C GN G G+GV + E TNN E+ AAI A+
Sbjct: 182 VIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 241
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ + W+ W++ WK + + VKN+ + + + ++ + +
Sbjct: 242 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITVK 301
Query: 124 W--IKGHAGNQENEKVDRIARNAAVSFKNK 151
W ++ H G + NE D++AR + +K K
Sbjct: 302 WNYVEAHKGIEGNEMADKLARQGSALYKQK 331
>gi|310828621|ref|YP_003960978.1| ribonuclease H [Eubacterium limosum KIST612]
gi|308740355|gb|ADO38015.1| ribonuclease H [Eubacterium limosum KIST612]
Length = 152
Score = 94.5 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 6 LREVHAYTDGACSGNP----GPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKA 59
++ V YTDG C GN G G +L Y K K TTNN+MEL+A I
Sbjct: 1 MKYVELYTDGGCRGNGQAGDNIGAIGGILIYPEKNIRKEYKKAYPNTTNNQMELLAVITG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L LK PC+V++++DS+YV ++Q W+ W +KN +LWM+ E H
Sbjct: 61 LKMLKEPCEVVIHSDSAYVVNAYNQNWVTGWKAKNWSRGKAGPLKNKELWMELDELVNYH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+KGHA N+ N + D + A ++
Sbjct: 121 DARFAKVKGHADNELNNRADALVNEAMDAY 150
>gi|307183362|gb|EFN70220.1| Ribonuclease H1 [Camponotus floridanus]
Length = 296
Score = 94.5 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTAL 63
V+ +TDGACS N G GV R + TNN E+ A
Sbjct: 149 VNVFTDGACSSNGYKNAQAGIGVWFRDNHPLNVSQPVVGRPTNNMAEIQAVTVAARQAKK 208
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS +V +QW+ W++ GWKT + K V N ++ + V
Sbjct: 209 AGIKKLKINTDSKFVISCITQWMPSWKKRGWKTIENKPVINKKELLEMEKELESLTVAWN 268
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH G NE D++A+ + +K+
Sbjct: 269 HVNGHIGIYGNEMADKLAKEGCLLYKS 295
>gi|224370306|ref|YP_002604470.1| RnhA2 [Desulfobacterium autotrophicum HRM2]
gi|223693023|gb|ACN16306.1| RnhA2 [Desulfobacterium autotrophicum HRM2]
Length = 201
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 9 VHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
+ YTDGACSGNPGP G G V+++ IS TNN EL A + +
Sbjct: 72 IFIYTDGACSGNPGPAGSGVVVIQNDIIVHEISESLGPATNNIAELTAIKLGIEFVKDHH 131
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V LYTDS Y + K S +K + ++ + +
Sbjct: 132 ETPVTLYTDSRYAIGILTMNWKAKANVELVESIRKLM------------KPFKRLKVVHV 179
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
KGH+G+ NE+ D +A +++
Sbjct: 180 KGHSGHPGNERADLLAVRGSMA 201
>gi|213511842|ref|NP_001135083.1| Ribonuclease H1 [Salmo salar]
gi|209738530|gb|ACI70134.1| Ribonuclease H1 [Salmo salar]
Length = 291
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG CSGN G GV + + TN R EL AA KAL K
Sbjct: 145 VVVYTDGCCSGNGKAGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 204
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K++LYTDS + G + W+K W+ N W+ + V N + + K + + +V
Sbjct: 205 MNIKKLVLYTDSKFTINGVTSWVKNWKLNNWRLNSGGPVINKEDFEKLDMLNEELEVVWL 264
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
I GHAG NE+ DR++R+ A
Sbjct: 265 HIPGHAGYLGNEEADRLSRDGAAKH 289
>gi|312599311|gb|ADQ91334.1| hypothetical protein BpV2_167 [Bathycoccus sp. RCC1105 virus BpV2]
Length = 144
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
+ YTDG+C GNPGPGGW ++ GG K TTNN ME+ A +KAL
Sbjct: 2 IEVYTDGSCLGNPGPGGWAYIIDDFIGR----GGAKVTTNNVMEMTAVVKALEKCIELGH 57
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWI 125
V +YTDS+YV G +W K W++NGWKTS + VKN DLW+ + + + VD+ W+
Sbjct: 58 DTVTVYTDSNYVKMGLLEWSKNWERNGWKTSKGEPVKNKDLWIHMLYLLRKIEFVDIKWV 117
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H GN++NE VD AR A F K
Sbjct: 118 KAHNGNEKNEIVDTQAREYAYLFSKK 143
>gi|322710650|gb|EFZ02224.1| RNase H domain protein [Metarhizium anisopliae ARSEF 23]
Length = 449
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R ELMA ++AL
Sbjct: 300 LQIYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIAP 359
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V + +DS Y +QW W+ GWKT+ + VKN D+ ++ +
Sbjct: 360 LEQTVQIISDSQYSINCVTQWAIGWKHKGWKTATGENVKNQDIIRAVLDKMDERTKTGAN 419
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+W+KGHA ++ N DR+A A
Sbjct: 420 TYFHWVKGHASDRGNVAADRLAVRGAKMA 448
>gi|313768158|ref|YP_004061589.1| hypothetical protein BpV1_159 [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599765|gb|ADQ91786.1| hypothetical protein BpV1_159 [Bathycoccus sp. RCC1105 virus BpV1]
Length = 144
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
+ YTDG+C GNPGPGGW ++ GG K TTNN ME+ A +KAL
Sbjct: 2 IEVYTDGSCLGNPGPGGWAYIIDDFIGR----GGAKVTTNNVMEMTAVVKALEKCIELGH 57
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWI 125
V +YTDS+YV G +W K W++NGWKTS + VKN DLW+ + + VD+ W+
Sbjct: 58 DTVTVYTDSNYVKMGLLEWSKNWERNGWKTSKGEPVKNKDLWIHMLYLLRKIDFVDIKWV 117
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K H GN++NE VD AR A F K
Sbjct: 118 KAHNGNEKNEIVDTQAREYAYLFSKK 143
>gi|322701805|gb|EFY93553.1| RNase H domain protein [Metarhizium acridum CQMa 102]
Length = 448
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R ELMA ++AL
Sbjct: 299 LQIYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIAP 358
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V + +DS Y +QW W+ GWKT+ + VKN D+ ++ +
Sbjct: 359 LDQTVQIISDSQYSINCVTQWAIGWKHKGWKTATGENVKNQDIIRAVLDKMDERTKTGAH 418
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+W+KGHA ++ N DR+A A
Sbjct: 419 TYFHWVKGHASDRGNVAADRLAVRGAKMA 447
>gi|2677845|gb|AAC47810.1| ribonuclease H1 [Drosophila melanogaster]
Length = 333
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG+C GN G G+GV + E TNN E+ AAI A+
Sbjct: 182 VIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 241
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ + W+ W++ WK + + VKN+ + + + + + +
Sbjct: 242 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQDNNITVK 301
Query: 124 W--IKGHAGNQENEKVDRIARNAAVSFKNK 151
W ++ H G + NE D++AR + +K K
Sbjct: 302 WNYVEAHKGIEGNEMADKLARQGSALYKQK 331
>gi|126348109|emb|CAJ89830.1| putative ribonuclease H [Streptomyces ambofaciens ATCC 23877]
Length = 232
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 5 HLRE-VHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT 61
+RE V A DGA GNPGP GW ++ + + +G TNN EL A + L
Sbjct: 4 RMRERVVAACDGASKGNPGPAGWAWVVADAGEVPVRWEAGPLGRATNNVAELTALERLLA 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + + DS Y K + W+ W++NGWKTS K V N +L ++ E V+
Sbjct: 64 STDPDVPLEVRMDSQYAMKAVTTWLPGWKRNGWKTSAGKPVANQELVVRIDELLDGRSVE 123
Query: 122 LYWIKGHA--GNQENEKVDRIARNAA 145
++ H G++ N+ DR A AA
Sbjct: 124 FRYVPAHQVDGDRLNDFADRAASQAA 149
>gi|332669056|ref|YP_004452064.1| ribonuclease H [Cellulomonas fimi ATCC 484]
gi|332338094|gb|AEE44677.1| ribonuclease H [Cellulomonas fimi ATCC 484]
Length = 186
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW SGG TN EL A ++A+ A
Sbjct: 2 ITVSTDGSCLRNPGGAIGWAW---ANHDGTCASGGGPSGTNQVAELTAVLEAILAHPGDE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWI 125
+ + DS Y K S+W+ W++ GW+T+ V+N+ L A A+ V W+
Sbjct: 59 PLRIEADSQYAIKCSSEWVHGWKRKGWRTASGGPVQNLALVQAIDRAIAERPGPVAFAWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVSFKN 150
+GH G++ NE+ D +A AA ++
Sbjct: 119 RGHRGDRFNERADELAGIAAREARD 143
>gi|45552509|ref|NP_995777.1| ribonuclease H1, isoform B [Drosophila melanogaster]
gi|45445652|gb|AAS64899.1| ribonuclease H1, isoform B [Drosophila melanogaster]
Length = 314
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG+C GN G G+GV + E TNN E+ AAI A+
Sbjct: 163 VIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 222
Query: 66 --PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ + W+ W++ WK + + VKN+ + + + ++ + +
Sbjct: 223 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITVK 282
Query: 124 W--IKGHAGNQENEKVDRIARNAAVSFKNK 151
W ++ H G + NE D++AR + +K K
Sbjct: 283 WNYVEAHKGIEGNEMADKLARQGSALYKQK 312
>gi|225707592|gb|ACO09642.1| Ribonuclease H1 [Osmerus mordax]
Length = 306
Score = 93.8 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG CSGN G G GV + + TN R EL AA KAL K
Sbjct: 152 VVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 211
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K++LYTDS + G + W+K W+ NGW+ + V N + + K + + + +V
Sbjct: 212 MNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLNSGGHVINKEDFQKLDKLNGEVEVVWL 271
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
+ GHAG NE+ DR++R A
Sbjct: 272 HVPGHAGYLGNEEADRLSRVGASK 295
>gi|318040705|ref|ZP_07972661.1| ribonuclease HI [Synechococcus sp. CB0101]
Length = 254
Score = 93.8 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAA---IKALTALK 64
V A DGACSGNPGPGGWG LLR+ G + G E TTNNRMEL AA ++ L L
Sbjct: 8 VAAACDGACSGNPGPGGWGCLLRFSDGSVQEFGGFEPNTTNNRMELTAALTLLEKLAVLP 67
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + TDS Y+ GFS+WI W++ GW+T+ + ++A+ + +
Sbjct: 68 RDPNLTIRTDSKYLIDGFSKWINGWKRKGWRTASGSP-VLNRDLWESLDAARVSGLPFTY 126
Query: 125 IKGHAGNQENEKVDRIARN 143
+KGH+G+ +N++ D IA
Sbjct: 127 VKGHSGDPDNDRCDAIAVA 145
>gi|29827679|ref|NP_822313.1| ribonuclease H [Streptomyces avermitilis MA-4680]
gi|15823955|dbj|BAB69174.1| ribonuclease H [Streptomyces avermitilis]
gi|29604779|dbj|BAC68848.1| putative ribonuclease H [Streptomyces avermitilis MA-4680]
Length = 236
Score = 93.8 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIK 58
M V A DGA GNPGP GW ++ + + +G TNN EL A +
Sbjct: 1 MIGGMSERVVAACDGASKGNPGPAGWAWVVADGEETPTRWAAGALGTATNNVAELTALER 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L+A+ + + DS Y K + W+ W++ GWKT+ K V N +L + E
Sbjct: 61 LLSAMDPDVPLEIRMDSQYAMKAVTTWLPGWKRKGWKTAAGKPVANQELVARIDELLDGR 120
Query: 119 KVDLYWIKGHA--GNQENEKVDRIARNAA 145
V+ ++ H G++ N+ DR A AA
Sbjct: 121 SVEFRYVPAHQVDGDRLNDFADRAASQAA 149
>gi|207110080|ref|ZP_03244242.1| ribonuclease H [Helicobacter pylori HPKX_438_CA4C1]
Length = 130
Score = 93.8 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Query: 19 GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYV 78
GNPG GG+ +LRYK KEKIISGGE+ TTNNRMEL A +AL LK PC + LY+DS YV
Sbjct: 1 GNPGSGGYAAILRYKDKEKIISGGEEFTTNNRMELRALNEALKILKRPCHITLYSDSQYV 60
Query: 79 HKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVD 138
+ + W+ WQ + VKN+DLW +FV+ S H + WIKGH G+ ENE+ D
Sbjct: 61 CQAINVWLANWQ-----KKNFVKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCD 115
Query: 139 RIARNAAVSFKN 150
+A+ A
Sbjct: 116 SLAKLEAQKRIK 127
>gi|262276481|ref|ZP_06054290.1| ribonuclease HI [Grimontia hollisae CIP 101886]
gi|262220289|gb|EEY71605.1| ribonuclease HI [Grimontia hollisae CIP 101886]
Length = 130
Score = 93.4 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 63/118 (53%), Positives = 80/118 (67%)
Query: 30 LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKW 89
+RYK EK +S G TTNNRMEL+AAI L +LK C V L TDS YV +G +QWI W
Sbjct: 1 MRYKQHEKELSEGFSLTTNNRMELLAAIVGLASLKESCNVTLTTDSQYVRQGITQWIHNW 60
Query: 90 QQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ WKT+DKK VKN DLW + + +H VD W+KGHAG+ ENE+ D +AR AA +
Sbjct: 61 KKRDWKTADKKPVKNADLWQRLDSETQRHTVDWQWVKGHAGHPENERCDELARTAAEN 118
>gi|160285882|pdb|2QKB|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
gi|160285883|pdb|2QKB|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
Length = 154
Score = 93.4 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 8 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 67
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYT+S + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 68 QNINKLVLYTNSXFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGXDIQWX 127
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 128 HVPGHSGFIGNEEADRLAREGAKQSED 154
>gi|226361398|ref|YP_002779176.1| ribonuclease HI [Rhodococcus opacus B4]
gi|226239883|dbj|BAH50231.1| ribonuclease HI [Rhodococcus opacus B4]
Length = 178
Score = 93.4 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 9 VHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ TDG+C NPG GW + + SGGE TN EL A ++A+TA
Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSQSGGEPSGTNQIAELRALLEAITAHPGAD 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWI 125
+L+ +DS Y K S+W+ W++ GWKT+ VKN+ L A A+ V W+
Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAIAERPGPVRFRWV 118
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
+GH GN NE D +A AA +
Sbjct: 119 RGHVGNHYNEMADVLAGEAARA 140
>gi|308235674|ref|ZP_07666411.1| ribonuclease H [Gardnerella vaginalis ATCC 14018]
gi|311114271|ref|YP_003985492.1| ribonuclease H [Gardnerella vaginalis ATCC 14019]
gi|310945765|gb|ADP38469.1| ribonuclease H [Gardnerella vaginalis ATCC 14019]
Length = 353
Score = 93.4 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 9 VHAYTDGACSGNP-GPGGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIK 58
+ TDG+ GNP G GW ++ +GG TN EL A ++
Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHTDEAGSTNEHQHAGNADAGGATNGTNQIGELCAVLE 77
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A + + TDS Y + WI W++NGWK S K+ VKN DL +
Sbjct: 78 ALRAHPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLIRAIDSEITKR 137
Query: 119 K--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ V W+KGHAGN NEKVD +AR A ++++
Sbjct: 138 EGSVKFVWVKGHAGNAGNEKVDELARTYAEDCRSRL 173
>gi|260829299|ref|XP_002609599.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
gi|229294961|gb|EEN65609.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
Length = 203
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
YTDG C+ N G GV + + + TNNR E+ AA A+ + K
Sbjct: 51 VVYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIESAKEM 110
Query: 67 --CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+ L+TDS ++ G ++WI W++NGWK S K V+N + + A V
Sbjct: 111 GLAKISLHTDSQFLINGITKWIHGWKKNGWKLSTGKPVQNKEDFQSLDSALQGIDVQWVH 170
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
++GH G NE D +A+ +
Sbjct: 171 VRGHVGVPGNEAADGLAKEGSRK 193
>gi|315637507|ref|ZP_07892717.1| ribonuclease HI [Arcobacter butzleri JV22]
gi|315478225|gb|EFU68948.1| ribonuclease HI [Arcobacter butzleri JV22]
Length = 268
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKAL----TA 62
+ Y DGACSGNPG G G+++ K ++ G E N + + A+ +
Sbjct: 101 HIKIYCDGACSGNPGNAGSGIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQALTIASQ 160
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKVD 121
+ ++TDS Y + W W++NGW + + + ++K++
Sbjct: 161 THSENVISIFTDSKYAIDCITTWAYSWKKNGWSKKGGEIKNLELIQEAHHLYEKIKNKIE 220
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ +KGH+G + NE DR+A NA
Sbjct: 221 ITHVKGHSGIEGNELADRMAVNAIKE 246
>gi|148978346|ref|ZP_01814851.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Vibrionales bacterium SWAT-3]
gi|145962505|gb|EDK27783.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Vibrionales bacterium SWAT-3]
Length = 153
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 10 HAYTDGACSGNP------GPGGWGV-LLRYKGKEKIISGGEKET--TNNRMELMAAIKAL 60
TDGA + N GWG +L+ +SG TN R EL+AA++ L
Sbjct: 7 IVATDGASNTNHIKANQFSIAGWGALVLKDGTYIHKLSGRIDGVLATNIRAELVAALEGL 66
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
A V L+TDS YV KG ++W+ W++ GW+ S KK V + DLW + E V
Sbjct: 67 KATPLGSSVELFTDSEYVIKGLTEWMDNWKRKGWRNSAKKPVAHKDLWTELDELYQNRDV 126
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
L W+KGH+G+ NE+ D +A+ A S
Sbjct: 127 QLTWVKGHSGHLLNEEADTLAKEAMTS 153
>gi|326472277|gb|EGD96286.1| RNase H domain-containing protein [Trichophyton tonsurans CBS
112818]
gi|326483333|gb|EGE07343.1| hypothetical protein TEQG_08753 [Trichophyton equinum CBS 127.97]
Length = 381
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + + +S TN R EL A +AL
Sbjct: 210 LKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRALDIA 269
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---- 119
V ++TDS Y + W WQ+N W TS +K V+N DL + + K
Sbjct: 270 PKHRDVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEERKSLKV 329
Query: 120 -VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A N A
Sbjct: 330 KTLFEWVKGHNKDAGNEAADRLAVNGAN 357
>gi|327295675|ref|XP_003232532.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
gi|326464843|gb|EGD90296.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
Length = 381
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + + +S TN R EL A +AL
Sbjct: 210 LKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRALDIA 269
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---- 119
V ++TDS Y + W WQ+N W TS +K V+N DL + + K
Sbjct: 270 PKHRDVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEERKSLKV 329
Query: 120 -VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A N A
Sbjct: 330 KTLFEWVKGHNKDAGNEAADRLAVNGAN 357
>gi|302510739|ref|XP_003017321.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
gi|291180892|gb|EFE36676.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
Length = 427
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+ YTDG+ N G GV + + +S TN R EL A +AL
Sbjct: 256 LKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRALDIA 315
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---- 119
V ++TDS Y + W WQ+N W TS +K V+N DL + + K
Sbjct: 316 PKHRDVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEERKSLKV 375
Query: 120 -VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A N A
Sbjct: 376 KTLFEWVKGHNKDAGNEAADRLAVNGAN 403
>gi|160285878|pdb|2QK9|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 18-Mer RnaDNA HYBRID
gi|160285887|pdb|2QKK|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285888|pdb|2QKK|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285891|pdb|2QKK|E Chain E, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285892|pdb|2QKK|F Chain F, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285895|pdb|2QKK|I Chain I, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285896|pdb|2QKK|J Chain J, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285899|pdb|2QKK|M Chain M, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285900|pdb|2QKK|N Chain N, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285903|pdb|2QKK|R Chain R, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285904|pdb|2QKK|S Chain S, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285907|pdb|2QKK|W Chain W, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
Length = 154
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 4 KHLRE-VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
H+ + V YTDG CS N G GV + TN R E+ AA KA
Sbjct: 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKA 61
Query: 60 LTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ + K++LYT+S + G + W++ W++NGWKTS K V N + ++ +
Sbjct: 62 IEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG 121
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ + GH+G NE+ DR+AR A ++
Sbjct: 122 MDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 154
>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
Length = 438
Score = 92.6 bits (228), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 26 WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQW 85
WG + + E + GGE +TTNNRMEL AAI+ ++ +++++TDS+YV +G ++W
Sbjct: 1 WGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCPPDAQLIVWTDSNYVKQGITEW 60
Query: 86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
I W+ + K VKN DLW K A ++ WIKGHAG+ NE D++A A
Sbjct: 61 IHGWK-----KKNWKDVKNPDLWQKLDAVCAGRNIEWNWIKGHAGHAGNEMADQLANLGA 115
Query: 146 VSFKNKI 152
++
Sbjct: 116 DKTAQEL 122
>gi|164660740|ref|XP_001731493.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
gi|159105393|gb|EDP44279.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
Length = 304
Score = 92.6 bits (228), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 4 KHLREVHAYTDGACSGNPGPG---GWGVLL---RYKGKEKIISGGEKETTNNRMELMAA- 56
K E+ YTDG+ GN G G+GV Y + TNNR EL A
Sbjct: 150 KSPDEIIVYTDGSSHGNGKRGSIAGYGVYWADPLYHRQNVAARLPGPVQTNNRAELTAIL 209
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--A 114
I T + +YTDS Y + ++WI +W+ N WKTS KK V+N DL+ +
Sbjct: 210 IAIRTLPDPSRPLHIYTDSRYAIQAINKWIVQWRANNWKTSTKKDVENRDLFEAIQDAIN 269
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ +++ L +++GHAG+ N D++A A S
Sbjct: 270 ACRYRPVLTYVRGHAGHYGNVMADKLANEGAAS 302
>gi|289724715|gb|ADD18320.1| ribonuclease H [Glossina morsitans morsitans]
Length = 299
Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ AYTDG+C N G G+GV + TNN E+ AAI A+ +
Sbjct: 145 ILAYTDGSCFNNGGKNACAGYGVYFGDNHPLNVAEPVTGRVTNNVGEIQAAIYAVKTAQK 204
Query: 66 P--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVD 121
K+ + TDS ++ + WIK W+ W VKN + + V
Sbjct: 205 MGINKLCISTDSQFLINAVTLWIKGWKAKNWHLKTGDRVKNEVDFKELDSLLQDESLDVK 264
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
++K H G + NE D++A+ A +K
Sbjct: 265 WNYVKAHKGIKGNEMADKLAKTGAEIYKR 293
>gi|225710246|gb|ACO10969.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 257
Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--- 62
V +TDGACS N G G G + I + N + AI
Sbjct: 114 VKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQAIQSVK 173
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ KV++YTDS + W++ W+QNGWK S V N +++ + V
Sbjct: 174 NEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKADFIQLDDIRKGMSVKF 233
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
++GH G NE D++AR A
Sbjct: 234 IHVRGHQGIHGNEMADQLAREGAQ 257
>gi|121702361|ref|XP_001269445.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
gi|119397588|gb|EAW08019.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
Length = 402
Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R EL A ++AL
Sbjct: 228 LRIYTDGSSLKNGRDTAAAGVGVYFGPGDTRNVSEPLQGSRQTNQRAELTAILRALDIAP 287
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V + TDS Y + W KW++N W T+D+K V+N DL + + K
Sbjct: 288 RHRDVTIVTDSRYAIDCVTVWFIKWRRNNWLTADQKPVENKDLIESILVKIEERTELKVK 347
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A + A
Sbjct: 348 TLFEWVKGHNRDPGNEAADRLAVSGAR 374
>gi|284044423|ref|YP_003394763.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283948644|gb|ADB51388.1| Ribonuclease H [Conexibacter woesei DSM 14684]
Length = 175
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 11 AYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+TDGAC GNPGPGGW ++ G+ SGG+ TTNNRME AA++ + +L +
Sbjct: 28 VWTDGACKGNPGPGGWAAIVVPADGGEPLEYSGGDPATTNNRMEYTAALEGMRSLPAGSR 87
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
V + TDS + ++WI W++ GWKT+ VKN DL M +H+ V +W++G
Sbjct: 88 VCIVTDSQLMLNSMTRWITGWKRKGWKTASGDPVKNQDLVMALDSEVGRHETVRWHWVRG 147
Query: 128 HA---GNQE---NEKVDRI 140
H G+ N++ DR+
Sbjct: 148 HETGDGHAHKALNDRADRL 166
>gi|157737729|ref|YP_001490412.1| ribonuclease HI [Arcobacter butzleri RM4018]
gi|157699583|gb|ABV67743.1| ribonuclease HI [Arcobacter butzleri RM4018]
Length = 268
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKAL----TA 62
+ Y DGACSGNPG G G+++ K ++ G E N + + A+ +
Sbjct: 101 HIKIYCDGACSGNPGNAGSGIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQALTIASQ 160
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVD 121
+ ++TDS Y + W W++NGW + + K++
Sbjct: 161 THSENVISIFTDSKYAIDCITTWAYSWKKNGWSKKGGEIKNLELIQEAHYLYEKIKSKIE 220
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ +KGH+G + NE DR+A NA
Sbjct: 221 ITHVKGHSGIEGNELADRMAVNAIKE 246
>gi|296224561|ref|XP_002758102.1| PREDICTED: ribonuclease H1-like [Callithrix jacchus]
Length = 287
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTA 62
V YTDG C N G GV K + TN R E+ AA KA+
Sbjct: 138 DSVVVYTDGCCCSNGRRRPRAGIGVYWGPGHLCKNVGIRLPGRQTNQRAEIHAACKAIEQ 197
Query: 63 L--KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ K+++YTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 198 AKAQNISKLVVYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALERLTQGMDI 257
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 258 QWMHVPGHSGFMGNEEADRLAREGAKQSED 287
>gi|256371513|ref|YP_003109337.1| ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
gi|256008097|gb|ACU53664.1| ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
Length = 148
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDGAC GNPGPGGW + SG E +TTN RMEL A ++AL A P VL
Sbjct: 7 VYTDGACLGNPGPGGWAWF--EPLTGRRASGSEAQTTNQRMELTAVLRALEADPAP-LVL 63
Query: 71 LYTDSSYVHKGFSQWIK-KWQQNGWKTSDKKTVKNIDLWMKFVEA--SAQHKVDLYWIKG 127
+ +DS YV + F + +W+QNG++ + + V N DLW + V W++G
Sbjct: 64 VRSDSQYVVRCFQERWWARWRQNGFRNAKGQPVSNRDLWELVLRLVLDEGRSVRFEWVRG 123
Query: 128 HAGNQENEKVD 138
HAG+ NE+VD
Sbjct: 124 HAGDPGNEEVD 134
>gi|168333931|ref|ZP_02692163.1| Ribonuclease H [Epulopiscium sp. 'N.t. morphotype B']
Length = 151
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 6 LREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ E+ Y DG C GN G WGV+L YKG K ISGG TTNN+MEL AAI L++
Sbjct: 1 MSEIEIYCDGGCRGNHVKNNIGAWGVVLIYKGIIKEISGGAINTTNNKMELTAAIVGLSS 60
Query: 63 LKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
+K +Y DS+YV G + WI W++NG+K S K+ VKN +LW + K +
Sbjct: 61 IKNKDVPTKVYLDSAYVLNGITNWIYGWRKNGFKDSKKQPVKNRELWEDLYNXKCKFKNI 120
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
D +KGH+ N N + D + +
Sbjct: 121 DFIKVKGHSSNAGNNRADELCNIEMDKLIKE 151
>gi|47214632|emb|CAG01473.1| unnamed protein product [Tetraodon nigroviridis]
Length = 279
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--AL 63
V YTDG CS N G GV + TN R E+ AA +AL
Sbjct: 128 VVVYTDGCCSANGKVGARAGIGVYWGLNHPLNVAERLPGRQTNQRAEIQAACRALELAKE 187
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W+K W+ N W+ +V N + + K +A V
Sbjct: 188 QNIKKLVLYTDSKFTINGVTCWVKNWKLNNWRLKSGGSVTNKEDFEKLERLNAGLDVVWM 247
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
+ GHAG NE+ DR++R A
Sbjct: 248 HVPGHAGYHGNEQADRLSREGAAK 271
>gi|328726334|ref|XP_003248854.1| PREDICTED: hypothetical protein LOC100570279 [Acyrthosiphon pisum]
Length = 401
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+V YTDGACS N G G GV + TNN E+ + IKA+ +
Sbjct: 255 NQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKAIERV 314
Query: 64 KYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
++ ++TDS +V K ++W+ +W GWKTS VKN +++M + V
Sbjct: 315 YSTGLTRISIHTDSDFVIKSVNEWMPRWLSKGWKTSAGAEVKNKEMFMILNKRIQSMDSV 374
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++ GH G NE+ D++AR A
Sbjct: 375 SWTYVPGHKGIIGNEEADKLARIGAK 400
>gi|307701133|ref|ZP_07638158.1| ribonuclease HI [Mobiluncus mulieris FB024-16]
gi|307614128|gb|EFN93372.1| ribonuclease HI [Mobiluncus mulieris FB024-16]
Length = 185
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
E+ DG+ GNPGP GW + + +GG + TNNR ELMA I L A +
Sbjct: 2 EITVAADGSALGNPGPAGWAWFV---DENNWSAGGWPQATNNRGELMAVIDFLEASAVFP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V DS YV ++W+ W++ GW+ +D K V N DL + A +V W+
Sbjct: 59 EIAVHFLCDSQYVINSVTKWMPGWKRRGWRKADGKPVLNDDLMKRLDALLAGRRVRFEWV 118
Query: 126 KGHAGNQENE 135
KGHAG+ NE
Sbjct: 119 KGHAGHPMNE 128
>gi|327282766|ref|XP_003226113.1| PREDICTED: ribonuclease H1-like isoform 1 [Anolis carolinensis]
Length = 323
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG CS N G GV TN R E+ AA KA+ +
Sbjct: 180 VVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAKSQ 239
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+ +YTDS + G + W+ W+ NGWKT K V N + + K + S +
Sbjct: 240 NIKKLAIYTDSKFTINGMTSWVPNWKSNGWKTCAGKDVTNKEDFEKLSKLSEGMDIQWMH 299
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+ GHAG NE DR+A+ A
Sbjct: 300 VPGHAGFTGNEAADRLAKEGAGK 322
>gi|152993834|ref|YP_001359555.1| ribonuclease HI [Sulfurovum sp. NBC37-1]
gi|187611399|sp|A6QCI9|RNH_SULNB RecName: Full=Ribonuclease H; Short=RNase H
gi|151425695|dbj|BAF73198.1| ribonuclease HI [Sulfurovum sp. NBC37-1]
Length = 147
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M + +++ Y+DG+ GNPGPGG+G +L YKG K GGE+ETTNNRMEL I+ L
Sbjct: 1 MQKQARKQITLYSDGSSLGNPGPGGYGGILEYKGSRKEYFGGEEETTNNRMELRGVIEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
LK PC V + +DSSYV K ++W++ W D K VKN+DLW ++EA+A H V
Sbjct: 61 KLLKEPCDVEVVSDSSYVVKAINEWLESWI-----RRDFKKVKNVDLWKAYIEAAAPHHV 115
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W++GH G+ ENE+ D +ARN A K +
Sbjct: 116 HGTWVRGHDGHPENERCDELARNEAERIKASL 147
>gi|320585958|gb|EFW98637.1| ribonuclease [Grosmannia clavigera kw1407]
Length = 974
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
++ YTDG+ GN G G GV + K I + E TN R EL A ++AL A+
Sbjct: 826 LNIYTDGSSLGNGKHGALAGIGVFFGHGDKRNISERLKGEPQTNQRAELTAIMRALQAVP 885
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----- 119
V +++DS+Y S+W K W NGWKT V N DL
Sbjct: 886 VSQPVRIFSDSTYAINCVSEWYKSWASNGWKTRGGDPVMNQDLIRAVRTCIDARDKASTA 945
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH+ + N D +A A
Sbjct: 946 TMFRWVKGHSSDSGNVAADLLANQGAR 972
>gi|313768374|ref|YP_004062054.1| hypothetical protein MpV1_171 [Micromonas sp. RCC1109 virus MpV1]
gi|312599070|gb|ADQ91094.1| hypothetical protein MpV1_171 [Micromonas sp. RCC1109 virus MpV1]
Length = 142
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C GNPG GGW V+ S + A + + + +V
Sbjct: 3 EVYTDGSCLGNPGRGGWAVVSDKFVVCDNTSRTTNNIMEMTAVVKALERCIDHHEL--RV 60
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKGH 128
+YTDS+YV G + WI W++NGWKTS+ VKN +LW+K + +V+ W+K H
Sbjct: 61 RIYTDSNYVKNGITLWIHNWKKNGWKTSNGGDVKNKELWVKIDKLQEQMKEVEWKWVKAH 120
Query: 129 AGNQENEKVDRIARNAAVSF 148
GN++NE+VD +AR A
Sbjct: 121 NGNEKNEQVDTLARECAKKL 140
>gi|269977134|ref|ZP_06184107.1| ribonuclease HI [Mobiluncus mulieris 28-1]
gi|269934437|gb|EEZ90998.1| ribonuclease HI [Mobiluncus mulieris 28-1]
Length = 185
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
E+ DG+ GNPGP GW + + +GG + TNNR ELMA I L A +
Sbjct: 2 EITVAADGSALGNPGPAGWAWFV---DENNWSAGGWPQATNNRGELMAVIDFLEASAVFP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V DS YV ++W+ W++ GW+ +D K V N DL + A +V W+
Sbjct: 59 EIAVHFLCDSQYVINSVTKWMPGWKRRGWRKADGKPVLNDDLMKRLDALLAGRRVRFEWV 118
Query: 126 KGHAGNQENE 135
KGHAG+ NE
Sbjct: 119 KGHAGHPMNE 128
>gi|327399554|ref|YP_004340423.1| ribonuclease H [Hippea maritima DSM 10411]
gi|327182183|gb|AEA34364.1| ribonuclease H [Hippea maritima DSM 10411]
Length = 150
Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDG+C GGWGV + + KE SG + +++ MEL+AA+KAL L
Sbjct: 3 VEVYTDGSCFEKHSIGGWGVYIIFNKKEIKFSGFAECSSSTSMELIAALKALEYLHQYSD 62
Query: 69 ----VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y D Y K + K + + + + K + L + K++ +
Sbjct: 63 EIEEIEFYIDCDYTAKLMKELKSKDKISFRSKTSFRNRKTLMLLAHYAA---MFKINWHT 119
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+K H G + NE D +A+ AA
Sbjct: 120 VKSHRGIKGNEIADSLAKKAAK 141
>gi|148231538|ref|NP_001089336.1| hypothetical protein LOC734386 [Xenopus laevis]
gi|62027455|gb|AAH92118.1| MGC115038 protein [Xenopus laevis]
Length = 204
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALT 61
R YTDG CS N G G GV + + E TN R E+ AA
Sbjct: 59 RSAEVYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQA 118
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + TDS + G ++W+ +W++N WKT D + V N + K +A V
Sbjct: 119 RNDNVTHLEINTDSKFTIDGMTKWVPRWKENNWKTIDGRDVINKQDFQKLDKACENMDVK 178
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
++ GH+GN NE D++A+ +
Sbjct: 179 WNYVPGHSGNAGNEMADQLAKAGSSK 204
>gi|256397240|ref|YP_003118804.1| ribonuclease H [Catenulispora acidiphila DSM 44928]
gi|256363466|gb|ACU76963.1| ribonuclease H [Catenulispora acidiphila DSM 44928]
Length = 242
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
M S + + A DGA GNPGP W +L + SG TNN EL A +
Sbjct: 1 MPSSQ-KRLIAACDGATKGNPGPSAWAWVLADADGKVLRWRSGPLGHATNNIAELTALRE 59
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + +V DS Y ++W+ W++NGW T+ KK V N DL + A
Sbjct: 60 LLVEVGPGAQVEARLDSQYTINAVTKWLPSWKKNGWLTASKKPVANADLIREIDALLATR 119
Query: 119 KVDLYWIKGHA--GNQENEKVDRIARNAAVSFK 149
V + H G+ N+ DR A +A+S +
Sbjct: 120 DVAFVHVAAHQVNGDPYNDLADRAASASAISQQ 152
>gi|227875622|ref|ZP_03993761.1| ribonuclease H [Mobiluncus mulieris ATCC 35243]
gi|227843807|gb|EEJ53977.1| ribonuclease H [Mobiluncus mulieris ATCC 35243]
Length = 188
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
E+ DG+ GNPGP GW + + +GG + TNNR ELMA I L A +
Sbjct: 5 EITVAADGSALGNPGPAGWAWFV---DENNWSAGGWPQATNNRGELMAVIDFLEASAVFP 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V DS YV ++W+ W++ GW+ +D K V N DL + A +V W+
Sbjct: 62 EIAVHFLCDSQYVINSVTKWMPGWKRRGWRKADGKPVLNDDLMKRLDALLAGRRVRFEWV 121
Query: 126 KGHAGNQENE 135
KGHAG+ NE
Sbjct: 122 KGHAGHPMNE 131
>gi|119714682|ref|YP_921647.1| ribonuclease H [Nocardioides sp. JS614]
gi|119535343|gb|ABL79960.1| RNase HI [Nocardioides sp. JS614]
Length = 143
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDGACSGNPGPGGW L SG E +TN RME+ AA++A+ +L P V
Sbjct: 9 EVFTDGACSGNPGPGGWAWAL---DTAVYASGREAPSTNQRMEIRAALEAVRSLDGPLLV 65
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHKVDLYWIKG 127
+DS+YV F + + S + + + + V W+KG
Sbjct: 66 --VSDSTYVVHCFRDLWWQGWLDRDWVSSARKPVANRDLWEPLVGLVQDRGDVAFAWVKG 123
Query: 128 HAGNQENEKVDRIARNA 144
H+G+ N+ VDR+A A
Sbjct: 124 HSGHVMNDFVDRLAVAA 140
>gi|311899344|dbj|BAJ31752.1| putative ribonuclease H [Kitasatospora setae KM-6054]
Length = 226
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALTALKY 65
V A DGA GNPGP GW ++ ++ +G TNN EL A + L A
Sbjct: 4 RVIAACDGAAKGNPGPAGWAFVVADGNGTPQRWAAGPLGRNTNNVGELTALQRLLEATDP 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS+Y ++W+ W++NGWKT+ K V N +L + V+ ++
Sbjct: 64 AVPLEVRLDSTYTRDAVTKWLHGWKRNGWKTAAGKPVANQELIQRIDALLTGRDVEFVYV 123
Query: 126 KGHA--GNQENEKVDRIARNAAVSFK 149
H G+ N D+ A +AA + +
Sbjct: 124 PAHQVDGDPLNAIADKAASDAARTQQ 149
>gi|254386145|ref|ZP_05001458.1| ribonuclease H [Streptomyces sp. Mg1]
gi|194345003|gb|EDX25969.1| ribonuclease H [Streptomyces sp. Mg1]
Length = 233
Score = 91.8 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ A DGA GNPGP GW ++ E+ +G TNN EL A + L AL
Sbjct: 4 RIIAACDGAAKGNPGPAGWAWVIADAQGRPERWEAGALGRATNNVGELTALQRLLEALAP 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V + DS Y K +QW+ W++NGWKT+ K V N +L A +V+ ++
Sbjct: 64 GTAVEVRMDSQYAMKAVTQWLPAWKRNGWKTAAGKPVANRELVESIDALLADREVEFRYV 123
Query: 126 KGH--AGNQENEKVDRIARNAAVSFK 149
H G+ N D+ A +AA + +
Sbjct: 124 PAHREDGDHLNAIADQAASDAARTQQ 149
>gi|306818931|ref|ZP_07452652.1| ribonuclease HI [Mobiluncus mulieris ATCC 35239]
gi|304648333|gb|EFM45637.1| ribonuclease HI [Mobiluncus mulieris ATCC 35239]
Length = 188
Score = 91.4 bits (225), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
E+ DG+ GNPGP GW + + +GG + TNNR ELMA I L A +
Sbjct: 5 EITVAADGSALGNPGPAGWAWFV---DENNWSAGGWPQATNNRGELMAVIDFLEASAVFP 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V DS YV ++W+ W++ GW+ +D K V N DL + A +V W+
Sbjct: 62 EIAVHFLCDSQYVINSVTKWMPGWKRRGWRKADGKPVLNDDLMKRLDALLAGRRVRFEWV 121
Query: 126 KGHAGNQENE 135
KGHAG+ NE
Sbjct: 122 KGHAGHPMNE 131
>gi|319783529|ref|YP_004143005.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169417|gb|ADV12955.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 276
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
Query: 9 VHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ Y DG C NPG GGWG + R + GG TNN MEL + AL +
Sbjct: 105 LVIYCDGCCEPNPGVGGWGFAVYRDGVEIDASFGGAATATNNTMELTGLLMALAWVAASA 164
Query: 68 KVLL---YTDSSYVHKGFSQWIKKWQQNGWKTS-------DKKTVKNIDLWMKFVEASAQ 117
Y DS Y KG ++W+ W+ GWK ++
Sbjct: 165 PAEPAVIYCDSQYAVKGLNEWVPGWKAKGWKRKGGNASEKNQSIANLALWQAIDRARDEL 224
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + W+KGHAG NE+ D +A
Sbjct: 225 QFIKVKWVKGHAGAVGNERADELAGQGREQA 255
>gi|331696306|ref|YP_004332545.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
gi|326950995|gb|AEA24692.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
Length = 210
Score = 91.1 bits (224), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/137 (40%), Positives = 77/137 (56%), Gaps = 7/137 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDGACSGNPGPGGW R + SGGE TTN RME+ AA++A+
Sbjct: 70 LEVWTDGACSGNPGPGGWAWATRDG---RQDSGGEFPTTNQRMEIRAALEAVR--ALQGP 124
Query: 69 VLLYTDSSYVHKGFS-QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIK 126
+++ +DS+YV F +W K W GW TS +K V + DLW V V W+K
Sbjct: 125 LVVVSDSTYVVNCFRDEWWKGWIARGWVTSARKPVVSRDLWEPLVTLVQDRGDVSFRWVK 184
Query: 127 GHAGNQENEKVDRIARN 143
GH+G++ N+ VD +A
Sbjct: 185 GHSGDEMNDLVDALAVE 201
>gi|268573648|ref|XP_002641801.1| C. briggsae CBR-RNH-1.0 protein [Caenorhabditis briggsae]
gi|187031586|emb|CAP29650.1| CBR-RNH-1.0 protein [Caenorhabditis briggsae AF16]
Length = 266
Score = 91.1 bits (224), Expect = 4e-17, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
YTDGACS N GWGV ++ TNNR EL+A KAL
Sbjct: 119 VVYTDGACSKNGKAKARAGWGVYWGEDSEDNAFGPVYGTATNNRGELIAVEKALEKAIEK 178
Query: 67 --CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+++ TDS+ + + + WI W++ GWKT+ V N D+ +K + KV
Sbjct: 179 GLTKLVVKTDSNLLVQSINIWIHGWKRKGWKTATGSDVLNKDVLVKIDNLRQKLKVKFMH 238
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
++GHAG NEK D++AR A +
Sbjct: 239 VRGHAGVDGNEKADKLARKGAAMY 262
>gi|224369567|ref|YP_002603731.1| RnhA1 [Desulfobacterium autotrophicum HRM2]
gi|223692284|gb|ACN15567.1| RnhA1 [Desulfobacterium autotrophicum HRM2]
Length = 219
Score = 91.1 bits (224), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+ YTDGA SGNPGP G GV+L Y ++ IS TNN EL A + L LK
Sbjct: 89 IQIYTDGASSGNPGPAGLGVVLLYGDHKREISESIGRATNNVAELNAIKRGLELLKRTDL 148
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ ++TDS+Y + K + + ++ L +KG
Sbjct: 149 PIEIHTDSTYCIGVLVKGW------------KPAMNQELILGIRKLMGRFKQLRLVKVKG 196
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H+G Q NE+ D +A F
Sbjct: 197 HSGVQGNERADALATAGVKKF 217
>gi|115388643|ref|XP_001211827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195911|gb|EAU37611.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 390
Score = 91.1 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTAL 63
+H YTDG+ N G GV + + +S + TN R EL A ++AL
Sbjct: 218 LHIYTDGSSLKNGKALAAAGVGVYFGPEDSSRNVSEPLRGSRQTNQRAELTAILRALDIA 277
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----- 118
V ++TDS Y + W +W++N W T+ K V+N DL + +
Sbjct: 278 PRHRDVTIFTDSQYAINCVTVWFVRWRRNNWMTAGNKMVENKDLIEAILSKIEEREELKV 337
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
K W+KGH + N DR+A N A
Sbjct: 338 KTLFQWVKGHNDDPGNVAADRLAVNGAQQ 366
>gi|328707186|ref|XP_001948714.2| PREDICTED: hypothetical protein LOC100160388 [Acyrthosiphon pisum]
Length = 362
Score = 91.1 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+V YTDGACS N G G GV + TNN E+ + IKA+ +
Sbjct: 216 NQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKAIERV 275
Query: 64 KYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
++ ++TDS +V K ++W+ +W GWKTS VKN +++M + V
Sbjct: 276 YSTGLTRISIHTDSDFVIKSVNEWMPRWLSKGWKTSAGAEVKNKEMFMILNKRIQSMDSV 335
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++ GH G NE+ D++AR A
Sbjct: 336 SWTYVPGHKGIIGNEEADKLARIGAK 361
>gi|119496353|ref|XP_001264950.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
gi|119413112|gb|EAW23053.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
Length = 412
Score = 91.1 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + TN R EL A ++AL
Sbjct: 241 LRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGNRQTNQRAELTAILRALDIAP 300
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W KW++N W T+D+K V+N DL + + K
Sbjct: 301 RHRDVTIFTDSRYAIDCVTVWFVKWRKNNWLTADQKPVENKDLIESILVKIEERNELKVK 360
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A + A
Sbjct: 361 TLFEWVKGHNRDPGNEAADRLAVSGAR 387
>gi|296419694|ref|XP_002839432.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635582|emb|CAZ83623.1| unnamed protein product [Tuber melanosporum]
Length = 405
Score = 90.7 bits (223), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ YTDG+ N P G GV K I TN+R EL A ++A+
Sbjct: 248 LRIYTDGSALRNGKPSAIAGVGVWFGDKDSRNISEPLPGPRQTNSRAELTAILRAINVAP 307
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
+V +YTDS Y K + W W +N W TS + V+N DL ++ +E + K
Sbjct: 308 MHREVAIYTDSEYAIKCVTVWHINWSKNNWITSVGRPVENQDLIIQILEKLKERERYGSK 367
Query: 120 VDLYWIKGHAGN-QENEKVDRIARNAAV 146
W++GH G N + DR+A A
Sbjct: 368 TSFEWVQGHTGRNDGNSEADRLAVEGAR 395
>gi|294786575|ref|ZP_06751829.1| ribonuclease HI [Parascardovia denticolens F0305]
gi|315226158|ref|ZP_07867946.1| ribonuclease HI [Parascardovia denticolens DSM 10105]
gi|294485408|gb|EFG33042.1| ribonuclease HI [Parascardovia denticolens F0305]
gi|315120290|gb|EFT83422.1| ribonuclease HI [Parascardovia denticolens DSM 10105]
Length = 345
Score = 90.7 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 1 MDSKHLREVHAYTDGACSGNP-GPGGWGVLLRYKGKEK--------IISGGEKETTNNRM 51
MD + +V TDG+ NP G GWG K GG TN
Sbjct: 15 MDPMN-NQVIVSTDGSALANPNGAMGWGWAEHVPAGRKPIASTGQDCDCGGASNGTNQIG 73
Query: 52 ELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
EL A ++AL + +L+ TDS Y ++WI W++NGWK S K+ VKN DL
Sbjct: 74 ELSAVLQALRTHRGSYPLLIETDSQYAINCSTKWIHGWKKNGWKNSKKEPVKNSDLIKAI 133
Query: 112 VEASAQH--KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
KV W+KGHAG+ NEKVD +AR A +
Sbjct: 134 DGEIRSRAGKVSFTWVKGHAGDFYNEKVDDLARGFAEKCR 173
>gi|21225561|ref|NP_631340.1| ribonuclease H [Streptomyces coelicolor A3(2)]
gi|256783419|ref|ZP_05521850.1| ribonuclease H [Streptomyces lividans TK24]
gi|4835311|emb|CAB42933.1| putative ribonuclease H [Streptomyces coelicolor A3(2)]
Length = 235
Score = 90.7 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 4 KHLRE-VHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKAL 60
+ +RE A DGA GNPGP GW ++ + + +G + TNN EL A + L
Sbjct: 3 ERMRERAVAACDGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTALERLL 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + DS Y K + W+ W++NGWKT+ K V N +L ++ E V
Sbjct: 63 ASTDPDVPLEVRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANRELVVRIDELLDGRSV 122
Query: 121 DLYWIKGHA--GNQENEKVDRIARNAA 145
+ ++ H G++ N+ DR A AA
Sbjct: 123 EFRYVPAHQVDGDRLNDFADRAASQAA 149
>gi|327409613|ref|YP_004347033.1| ribonuclease H [Lausannevirus]
gi|326784787|gb|AEA06921.1| ribonuclease H [Lausannevirus]
Length = 147
Score = 90.7 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALK---YP 66
AYTDG+C NPG GG+G ++ + +SG +TTNNR ELMA I+ L +
Sbjct: 5 AYTDGSCIKNPGNGGYGAVILKGEEVIQELSGFMPDTTNNRAELMAVIETLKWMDASGIS 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD-KKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + TDS YV G +W+ W++NGW+T+D +K V N +LW++ + +V WI
Sbjct: 65 SDITICTDSQYVSNGMEKWLPSWKKNGWRTADRRKPVLNKELWVELDALCQKRRVAFIWI 124
Query: 126 KGHAGNQENEKVDRIAR 142
+ + N+ DR+A
Sbjct: 125 -ARSSHPHNKTADRLAN 140
>gi|323252192|gb|EGA36045.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
Length = 133
Score = 90.7 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 60/101 (59%), Positives = 74/101 (73%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID 106
C+V L TDS YV +G +QWI W++ GWKT++KK VK
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKKCR 102
>gi|70991232|ref|XP_750465.1| ribonuclease H [Aspergillus fumigatus Af293]
gi|66848097|gb|EAL88427.1| ribonuclease H, putative [Aspergillus fumigatus Af293]
gi|159130938|gb|EDP56051.1| ribonuclease H, putative [Aspergillus fumigatus A1163]
Length = 410
Score = 90.3 bits (222), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV + + TN R EL A ++AL
Sbjct: 239 LRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGDRQTNQRAELTAILRALDIAP 298
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
V ++TDS Y + W KW++N W T+D+K V+N DL + + K
Sbjct: 299 RHRDVTIFTDSRYAIDCVTVWFVKWRKNNWLTADQKPVENKDLIESILVKIEERNELKVK 358
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH + NE DR+A + A
Sbjct: 359 TLFEWVKGHNRDPGNEAADRLAVSGAR 385
>gi|154317974|ref|XP_001558306.1| hypothetical protein BC1G_02970 [Botryotinia fuckeliana B05.10]
gi|150843628|gb|EDN18821.1| hypothetical protein BC1G_02970 [Botryotinia fuckeliana B05.10]
Length = 325
Score = 90.3 bits (222), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
+ +TDG+ GN G G+GV + I + E TN R EL AA++AL +
Sbjct: 175 IKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRALETVP 234
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
+ + TDS+Y + W K W +NGWKTS K V N DL + + +
Sbjct: 235 LDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRTKNKAQ 294
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+L W+KGH N N DR+A A+
Sbjct: 295 TNLTWVKGHDENPGNVAADRLAVKGAME 322
>gi|310796781|gb|EFQ32242.1| hypothetical protein GLRG_07386 [Glomerella graminicola M1.001]
Length = 355
Score = 90.3 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKY 65
YTDG+ GN PG G GV + E + TN R EL A ++AL
Sbjct: 198 KVYTDGSSLGNGTPGSVAGVGVYFGPNDPRNVSERLEGKLQTNQRAELTAILRALQLSPL 257
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-----V 120
+++ +DS Y K W K WQ+ GWKTS VKN DL E A+
Sbjct: 258 TQSLMILSDSKYSIKCVRDWYKDWQRLGWKTSTNSEVKNKDLIQAVREEIAKRDAAGATT 317
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV-----SFKNKI 152
D W+KGH + N D++A A + K+
Sbjct: 318 DFDWVKGHNNDPGNVAADKLAVAGARLGLPAKGRKKL 354
>gi|307214302|gb|EFN89389.1| Ribonuclease H1 [Harpegnathos saltator]
Length = 235
Score = 90.3 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTAL 63
V+ +TDGACS N G GV + + E TNN E+ A
Sbjct: 84 VNVFTDGACSSNGYKNARAGIGVWFQDHHPLNVSQPVEGRPTNNMAEIQAVTVAARQAKK 143
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ ++W+ KW+ GW T K V N ++ + V
Sbjct: 144 AGIKKLRINTDSKFLILCITEWMSKWKSRGWLTVGNKPVINKVELLEMEKELEPLIVAWN 203
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ GHAG NE D++AR + +K++
Sbjct: 204 HVNGHAGIHGNEMADKLAREGCMQYKSQ 231
>gi|158521996|ref|YP_001529866.1| ribonuclease H [Desulfococcus oleovorans Hxd3]
gi|158510822|gb|ABW67789.1| ribonuclease H [Desulfococcus oleovorans Hxd3]
Length = 230
Score = 90.3 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+ +TDGA SGNPGP G GVLL Y +K IS TNN EL A AL +K
Sbjct: 100 IQVFTDGAASGNPGPAGIGVLLIYGNSQKTISRYIGHATNNIAELKAIEAALLEIKNKKL 159
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V L+TDS+Y + K + +K ++ + ++ +KG
Sbjct: 160 PVRLFTDSAYSLGALTLGWKAQKNVELIAGIQKLMRTFS------------DLKIFKVKG 207
Query: 128 HAGNQENEKVDRIARNAAVSF 148
HAG ENE DR+A A
Sbjct: 208 HAGMAENETADRLATEAIQKL 228
>gi|289767295|ref|ZP_06526673.1| ribonuclease H [Streptomyces lividans TK24]
gi|6919966|sp|Q9X7R6|RNH_STRCO RecName: Full=Ribonuclease HI; Short=RNase HI
gi|289697494|gb|EFD64923.1| ribonuclease H [Streptomyces lividans TK24]
Length = 231
Score = 90.3 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 13 TDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA GNPGP GW ++ + + +G + TNN EL A + L + +
Sbjct: 9 CDGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTALERLLASTDPDVPLE 68
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA- 129
+ DS Y K + W+ W++NGWKT+ K V N +L ++ E V+ ++ H
Sbjct: 69 VRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANRELVVRIDELLDGRSVEFRYVPAHQV 128
Query: 130 -GNQENEKVDRIARNAA 145
G++ N+ DR A AA
Sbjct: 129 DGDRLNDFADRAASQAA 145
>gi|327282768|ref|XP_003226114.1| PREDICTED: ribonuclease H1-like isoform 2 [Anolis carolinensis]
Length = 300
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
YTDG CS N G GV TN R E+ AA KA+ +
Sbjct: 157 VVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAKSQ 216
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+ +YTDS + G + W+ W+ NGWKT K V N + + K + S +
Sbjct: 217 NIKKLAIYTDSKFTINGMTSWVPNWKSNGWKTCAGKDVTNKEDFEKLSKLSEGMDIQWMH 276
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+ GHAG NE DR+A+ A
Sbjct: 277 VPGHAGFTGNEAADRLAKEGAGK 299
>gi|289613870|emb|CBI59277.1| unnamed protein product [Sordaria macrospora]
Length = 326
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 9/151 (5%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTA 62
+ V YTDG+ GN G G GV +E I + TN R EL A ++AL
Sbjct: 175 KPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRALET 234
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH---- 118
+ L TDS Y + W K W +NGW+ S + V N DL +
Sbjct: 235 IPDTQSCELRTDSQYTINCVTTWYKSWMKNGWRNSKGEDVSNQDLIAAIRKKIETREAKG 294
Query: 119 -KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+KGH ++ N D +A +
Sbjct: 295 TETKFVWVKGHGTDEGNIAADVLAVEGSRKM 325
>gi|269954968|ref|YP_003324757.1| ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
gi|269303649|gb|ACZ29199.1| ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
Length = 191
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ TDG+C NPG G G + SGG TN EL A ++A+ A
Sbjct: 2 IIVSTDGSCLRNPG-GAIGWAWIDHEGGRFDSGGAASGTNQVAELTAVLRAVEAHPGDEP 60
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWIK 126
+L+ +DS Y + S+W++ W++ GW+T+ VKN++L A A V W++
Sbjct: 61 LLIESDSQYAIRCSSEWLEGWKRKGWRTASGSPVKNLELVQAIDAAIAGRGGPVRFRWVR 120
Query: 127 GHAGNQENEKVDR 139
GH GN NE+ D
Sbjct: 121 GHVGNPFNERADE 133
>gi|183601983|ref|ZP_02963352.1| ribonuclease H [Bifidobacterium animalis subsp. lactis HN019]
gi|219682895|ref|YP_002469278.1| ribonuclease H [Bifidobacterium animalis subsp. lactis AD011]
gi|241190471|ref|YP_002967865.1| ribonuclease H [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241195877|ref|YP_002969432.1| ribonuclease H [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|183218868|gb|EDT89510.1| ribonuclease H [Bifidobacterium animalis subsp. lactis HN019]
gi|219620545|gb|ACL28702.1| ribonuclease H [Bifidobacterium animalis subsp. lactis AD011]
gi|240248863|gb|ACS45803.1| ribonuclease H [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250431|gb|ACS47370.1| ribonuclease H [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|289178197|gb|ADC85443.1| Ribonuclease HI [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793458|gb|ADG32993.1| ribonuclease H [Bifidobacterium animalis subsp. lactis V9]
Length = 329
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIIS-------GGEKETTNNRMELMAAIKA 59
+ TDG+ NP GP GW G + GG TN EL A ++A
Sbjct: 2 TITVSTDGSALRNPNGPMGWAWADHTDGARDEHAHAGDCAAGGATNGTNQIGELCAVLEA 61
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH- 118
L A +++ +DS Y S+W+ W++NGWK S ++ VKN + ++
Sbjct: 62 LRAHPGSEPLVIESDSQYAINCSSKWVFGWKKNGWKNSKQEPVKNAPIIKAIDAEISKRA 121
Query: 119 -KVDLYWIKGHAGNQENEKVDRIAR 142
KV W+KGHAGN NEKVD +AR
Sbjct: 122 GKVSFRWVKGHAGNAGNEKVDDLAR 146
>gi|254431843|ref|ZP_05045546.1| ribonuclease H [Cyanobium sp. PCC 7001]
gi|197626296|gb|EDY38855.1| ribonuclease H [Cyanobium sp. PCC 7001]
Length = 266
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTAL---K 64
V A DGACSGNPGPGGWG LLR+ G + G E +TTNNRMEL AA+ L AL
Sbjct: 2 VAAACDGACSGNPGPGGWGALLRFEDGSVHEMGGAEADTTNNRMELTAALALLEALRDLP 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + TDS Y+ G +WI+ W++ GW+T+ + ++ + V L
Sbjct: 62 RHPDLAIRTDSRYLIDGLGKWIQGWKRKGWRTASGG-AVLNRDLWEKLDRARLADVPLRH 120
Query: 125 IKGHAGNQENEKVDRIARN 143
++GH+G+ +NE+ D IA
Sbjct: 121 VRGHSGDPDNERCDTIAVA 139
>gi|158297078|ref|XP_317369.4| AGAP008088-PA [Anopheles gambiae str. PEST]
gi|157015022|gb|EAA12293.4| AGAP008088-PA [Anopheles gambiae str. PEST]
Length = 294
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKG---KEKIISGGEKETTNNRMELMAAIKALTA 62
VH YTDG+C GN G GV K +SG AI+
Sbjct: 141 VHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSGRATNNCGEIQAASLAIRLARQ 200
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA--SAQHKV 120
V+ TDS ++ ++W+ W++ W + VKN +M+ + ++
Sbjct: 201 QGIRRLVVN-TDSQFLINAITKWLPGWKRRNWTLASGGPVKNQTDFMELERELSAGDIQI 259
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ H G NE+ D++AR + ++
Sbjct: 260 KWNHVDAHCGILGNERADQLARKGSEMYR 288
>gi|85093608|ref|XP_959725.1| hypothetical protein NCU05750 [Neurospora crassa OR74A]
gi|28921176|gb|EAA30489.1| predicted protein [Neurospora crassa OR74A]
Length = 327
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTA 62
+ V YTDG+ GN G G GV +E I + TN R EL A ++AL A
Sbjct: 176 KPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRALEA 235
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--- 119
+ L TDS Y + W KKW +N W+ + + V N DL + +
Sbjct: 236 IPDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNTKGEEVSNQDLIVAIRKKIDTRDRKA 295
Query: 120 --VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
W+KGH ++ N D +A A
Sbjct: 296 AETKFVWVKGHGTDEGNIAADMLAVKGATMM 326
>gi|302416407|ref|XP_003006035.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
gi|261355451|gb|EEY17879.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
Length = 328
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 11 AYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKYP 66
YTDG+ N G G GV + E E TN R EL A I+AL
Sbjct: 180 IYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIAPDE 239
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-----VD 121
V ++TDS Y + W K WQ+ W S + VKN DL + E +
Sbjct: 240 QDVQIFTDSQYSINCVTSWYKGWQKKDWHNSKGEPVKNRDLVEEVRELIETREAEGASTV 299
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+KGHA N N D +A A
Sbjct: 300 FTWVKGHADNVGNTAADHLAVAGAR 324
>gi|300742304|ref|ZP_07072325.1| ribonuclease H (RNase H) [Rothia dentocariosa M567]
gi|300381489|gb|EFJ78051.1| ribonuclease H (RNase H) [Rothia dentocariosa M567]
Length = 440
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ A DG+ GNPGP GW + + +GG + TNN E+ A + A +
Sbjct: 3 NQIIAAADGSALGNPGPAGWAWYI---DENHWAAGGWEHGTNNMGEIKAVLDLFEATAHR 59
Query: 67 --CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+L+Y DS YV +QW+ W++ GWK +D K V+N DL AS ++ W
Sbjct: 60 AESKLLIYCDSQYVINSLTQWMPGWKKRGWKKADGKPVQNRDLLEALDAASTGRDYEMVW 119
Query: 125 IKGHAGNQENE 135
+KGHAG++ NE
Sbjct: 120 VKGHAGHELNE 130
>gi|311112225|ref|YP_003983447.1| ribonuclease HI [Rothia dentocariosa ATCC 17931]
gi|310943719|gb|ADP40013.1| ribonuclease HI [Rothia dentocariosa ATCC 17931]
Length = 440
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ A DG+ GNPGP GW + + +GG + TNN E+ A + A +
Sbjct: 3 NQIIAAADGSALGNPGPAGWAWYI---DENHWAAGGWEHGTNNMGEIKAVLDLFEATAHR 59
Query: 67 --CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+L+Y DS YV +QW+ W++ GWK +D K V+N DL AS ++ W
Sbjct: 60 AESKLLIYCDSQYVINSLTQWMPGWKKRGWKKADGKPVQNRDLLEALDAASTGRDYEMVW 119
Query: 125 IKGHAGNQENE 135
+KGHAG++ NE
Sbjct: 120 VKGHAGHELNE 130
>gi|171683197|ref|XP_001906541.1| hypothetical protein [Podospora anserina S mat+]
gi|170941558|emb|CAP67210.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 9/154 (5%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAI 57
+ + YTDGA GN G GV I TN R ELMA +
Sbjct: 168 NPDPNELIVVYTDGAAPGNGKRHAAAGIGVYFGAGDPRNISKRLPGPLQTNQRAELMAIL 227
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL A V + TDS Y ++W + W +NGW ++ VKN D+ +
Sbjct: 228 LALQAFDPAESVEIRTDSQYSIDCVTKWYRGWVRNGWLSAKGAAVKNDDIIKPIRALIDE 287
Query: 118 H-----KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + GH+G+ N+ DR+A A
Sbjct: 288 RDAVGARTKFTKVAGHSGDPGNDAADRLAVLGAQ 321
>gi|321471007|gb|EFX81981.1| hypothetical protein DAPPUDRAFT_35962 [Daphnia pulex]
Length = 146
Score = 88.8 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALTAL 63
V YTDGAC N PG G GV Y + + NN E+ A I+AL +
Sbjct: 1 VIVYTDGACLRNGQPGAQAGIGVWFDYDHPLNVSQQLNRIDPATNNVAEIKAVIEALKIV 60
Query: 64 KYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K+ K+ ++TDS Y+ ++WI W + W+ D + +K+ + + V+A A +
Sbjct: 61 KFYGVEKLAIHTDSMYLINSVTKWIFSWLSSDWRKRDGEPIKHKKQYRELVKAMADVDIT 120
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
++KGH ++ N + D +AR A
Sbjct: 121 WVYVKGHGSHEGNIEADHLARQGAQQ 146
>gi|118403524|ref|NP_001072354.1| hypothetical protein LOC779807 [Xenopus (Silurana) tropicalis]
gi|111305694|gb|AAI21450.1| hypothetical protein MGC146443 [Xenopus (Silurana) tropicalis]
Length = 204
Score = 88.8 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
R YTDG CS N G G GV + + E TN R E+ AA A+
Sbjct: 59 RSAQVYTDGCCSRNGQYGANGGIGVYWGPGDSRNVSAKLEGRQTNQRAEIEAARTAVKQA 118
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + TDS + G +QW+ KW++NGWKT D + V N + K +A +
Sbjct: 119 RDDNITSLQINTDSKFTINGMTQWVPKWKENGWKTVDGRDVINKQDFQKLDKACENMDIR 178
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
++ GH+G+ N++ D++A+ +
Sbjct: 179 WNYVPGHSGSVGNDRADQLAKAGSRK 204
>gi|116200977|ref|XP_001226300.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
gi|88176891|gb|EAQ84359.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
Length = 312
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
V YTDG+ GN G G GV + E E TN R EL A ++AL +
Sbjct: 166 VIVYTDGSSLGNGRVGATAGVGVYFGANDPRNVSERLEGETQTNQRAELTAILRALEIID 225
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
+ + TDS Y + ++W W++NGWKT + + + + +
Sbjct: 226 LEQDLEIRTDSKYSIQCVTEWYINWERNGWKTRSGPVKNQDLVQLVRDKLEEREAKGGRT 285
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
W+KGH +Q N D++A A
Sbjct: 286 QFIWVKGHDTDQGNIAADQLAVAGAR 311
>gi|220911671|ref|YP_002486980.1| ribonuclease H [Arthrobacter chlorophenolicus A6]
gi|219858549|gb|ACL38891.1| Ribonuclease H [Arthrobacter chlorophenolicus A6]
Length = 358
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKY 65
+ A DG+ GNPGP GW + E +GG TNN+ ELMA + TA
Sbjct: 2 TITAAADGSALGNPGPAGWAWYV---NDECWRAGGWPHGTNNQGELMAVLDLLRATAHVR 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV ++W+ W++ GW+ +D K V N++L + A K W+
Sbjct: 59 QEDLHILCDSQYVINSITKWMPGWKRKGWRKADGKPVLNVELLKELDRELAGRKYTFEWV 118
Query: 126 KGHAGNQEN 134
KGHAG+ N
Sbjct: 119 KGHAGHDLN 127
>gi|148825594|ref|YP_001290347.1| ribonuclease H [Haemophilus influenzae PittEE]
gi|148715754|gb|ABQ97964.1| ribonuclease H [Haemophilus influenzae PittEE]
Length = 117
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 23 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQ 90
C + LY+DS Y+ G ++WI W+
Sbjct: 83 CLITLYSDSQYMKNGITKWIFNWK 106
>gi|116669346|ref|YP_830279.1| ribonuclease H [Arthrobacter sp. FB24]
gi|116609455|gb|ABK02179.1| RNase HI [Arthrobacter sp. FB24]
Length = 319
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
+ A DG+ GNPGP GW + +GG TNN+ ELMA +
Sbjct: 2 TITAAADGSALGNPGPAGWAWYVNDDC---WRAGGWPHGTNNQGELMAVLDLFRCTAHLP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + DS YV ++W+ W++ GW+ +D K V N+++ + +A + K W+
Sbjct: 59 GEELHILCDSQYVINSVTKWMPGWKRKGWRKADGKPVLNVEILREIDQALSGRKYRFEWV 118
Query: 126 KGHAGNQENE 135
+GHAG+ NE
Sbjct: 119 RGHAGHDLNE 128
>gi|86605504|ref|YP_474267.1| ribonuclease H [Synechococcus sp. JA-3-3Ab]
gi|86554046|gb|ABC99004.1| ribonuclease H [Synechococcus sp. JA-3-3Ab]
Length = 166
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKY---P 66
+TDG CS NPGPGGW V++ + GG+ +TNNRMEL I+AL +
Sbjct: 26 IFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDPASTNNRMELTGLIRALQYCRDTQSN 85
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+Y+DS + ++ W+++W GW+ + + +V + WI
Sbjct: 86 SIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPVENLDLVQELYQLKQQCPQVRVAWIP 145
Query: 127 GHAGNQENEKVDRIARNA 144
H G + NE VD + A
Sbjct: 146 AHRGLRWNEYVDELVARA 163
>gi|257067976|ref|YP_003154231.1| RNase HI [Brachybacterium faecium DSM 4810]
gi|256558794|gb|ACU84641.1| RNase HI [Brachybacterium faecium DSM 4810]
Length = 336
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKY 65
+ A DG+ GNPGP GW + +GG TNN EL A + TA+
Sbjct: 2 TITAAADGSALGNPGPAGWAWYIDDNS---WRAGGWPHGTNNMGELKAVLDLLEATAVDA 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+L+ DS YV ++W+ W++ GW+ D K V N++L A A V+ W+
Sbjct: 59 DQHLLILCDSQYVINSVTKWMPGWKRKGWRKKDGKPVLNVELLKDIDRALAGRSVEFEWV 118
Query: 126 KGHAGNQENE 135
KGH+G+ NE
Sbjct: 119 KGHSGHAMNE 128
>gi|153004605|ref|YP_001378930.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|187611389|sp|A7HB50|RNH_ANADF RecName: Full=Ribonuclease H; Short=RNase H
gi|152028178|gb|ABS25946.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 175
Score = 88.4 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 1 MDSKHLREVHAYTDGACSGNPG-PGGWGVL--------LRYKGKEKIISGGEKETTNNRM 51
M + A+ DG+ NPG PGG G + LR+ + G TNNRM
Sbjct: 1 MPADTPARYLAFADGSSLSNPGGPGGTGFVVVDRARPALRFGATRWVTDGTYA-VTNNRM 59
Query: 52 ELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
EL A ++AL L V + +DS YV S+WI W++ GW+T+ + V N DL
Sbjct: 60 ELRAVLEALDGLPEGEAVDVVSDSRYVVDALSKWIHGWRKKGWRTAAGEPVLNRDLIEAL 119
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +V W++GH G+ NE VD +A++AA
Sbjct: 120 DARGRELRVRYSWVRGHDGHPVNEVVDALAQSAAR 154
>gi|145604442|ref|XP_001405335.1| hypothetical protein MGG_14004 [Magnaporthe oryzae 70-15]
gi|145012439|gb|EDJ97095.1| hypothetical protein MGG_14004 [Magnaporthe oryzae 70-15]
Length = 341
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIKALTALKY 65
YTDG+ GN G GV + TN R EL A ++AL +L
Sbjct: 188 EVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNGPQTNQRAELTAILRALQSLGA 247
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----KV 120
V +++DS Y W KKWQ + W TS K V N DL Q K
Sbjct: 248 NEGVRIFSDSKYSISCVCDWYKKWQTSNWTTSAGKEVMNKDLIQPIRRLIEQREKRGVKT 307
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W+KGHA + N + D +A A +
Sbjct: 308 EFVWVKGHAATEGNVQADLLAVEGAKMAR 336
>gi|294791459|ref|ZP_06756616.1| putative RNase H [Scardovia inopinata F0304]
gi|294457930|gb|EFG26284.1| putative RNase H [Scardovia inopinata F0304]
Length = 330
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 8 EVHAYTDGACSGNP-GPGGWGV---------LLRYKGKEKIISGGEKETTNNRMELMAAI 57
V TDG+ NP GP GWG + GG TN EL A +
Sbjct: 37 TVTVSTDGSALSNPNGPMGWGWAEHTDTTGGHIASSTGRDCDCGGASNGTNQIGELCAVL 96
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL + +++ +DS Y K + W++ W++NGWK S + VKN L ++
Sbjct: 97 QALRTHRGSYCLIIESDSQYAIKCSTIWLEGWKKNGWKNSKHEPVKNAPLIKAIDREISE 156
Query: 118 HK--VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V W+KGHAGN NEKVD +AR A +
Sbjct: 157 RPGPVSFTWVKGHAGNMYNEKVDSLARGYAEKCQ 190
>gi|262341268|ref|YP_003284123.1| ribonuclease HI [Blattabacterium sp. (Blattella germanica) str.
Bge]
gi|262272605|gb|ACY40513.1| ribonuclease HI [Blattabacterium sp. (Blattella germanica) str.
Bge]
Length = 160
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAIKA-LT 61
+++H YTDG+ GNPGPGG+G+ + KIIS G + TTNNRMEL+A I
Sbjct: 3 QKIHIYTDGSSKGNPGPGGYGIFIETTIGNSYNRKIISEGFRYTTNNRMELLAVIVGLEK 62
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K ++++TDS Y+ + K N+DLW +F++ ++ +D
Sbjct: 63 IEKRKQNIVVFTDSKYIVNTIQNNWIHQWKKNNFFQKK----NVDLWKRFLKIYNKNIID 118
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
WIK H + N+ DR++ A+ KI
Sbjct: 119 FQWIKSHNNHYINDYCDRLSVEASKRKILKI 149
>gi|162449310|ref|YP_001611677.1| ribonuclease H [Sorangium cellulosum 'So ce 56']
gi|161159892|emb|CAN91197.1| Ribonuclease H [Sorangium cellulosum 'So ce 56']
Length = 250
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
V Y DGACSGNPGP G GV++ G+ S TNN EL A +++L + P
Sbjct: 111 VIVYADGACSGNPGPAGLGVVIIDGGRRIERSEFLGTATNNIAELTAILRSLEEVDEPGR 170
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++++TDS Y + K S + + L ++ G
Sbjct: 171 PIVIHTDSQYSIGVLQKGWKAKANTELIASLRGALAARPRA------------RLVYVPG 218
Query: 128 HAGNQENEKVDRIARNAAVS 147
HAG NE+ D +AR A
Sbjct: 219 HAGVLLNERADALAREAVRE 238
>gi|114766691|ref|ZP_01445630.1| ribonuclease HI [Pelagibaca bermudensis HTCC2601]
gi|114541081|gb|EAU44136.1| ribonuclease HI [Roseovarius sp. HTCC2601]
Length = 130
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/115 (51%), Positives = 79/115 (68%)
Query: 35 KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94
KE+ +SGGE +TTNNRMEL+AAI AL +L ++ + TDS+YV G + WI W++NGW
Sbjct: 11 KERELSGGEADTTNNRMELLAAINALESLTRASRITVVTDSAYVKNGVTGWIHGWKRNGW 70
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
KT+ KK VKN +LW + EA +H V W+KGHAG+ ENE+ D +AR FK
Sbjct: 71 KTAAKKPVKNAELWQRLDEAQRRHDVTWEWVKGHAGHPENERADELARAGMAPFK 125
>gi|328880255|emb|CCA53494.1| Ribonuclease HI [Streptomyces venezuelae ATCC 10712]
Length = 142
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ A DGA GNPGP W ++ E+ +G TNN EL A + L L
Sbjct: 4 KIIAACDGASKGNPGPAAWAWVIGRADGAIERWEAGPLGRATNNVAELTALERLLEELDP 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V + DS Y K + W+ W++ GWKTS V N DL ++ VD ++
Sbjct: 64 AVPVEVRMDSQYAMKAVTTWLPGWRRKGWKTSSGSPVANKDLVVRIDALLTGRDVDFVYV 123
Query: 126 KGHA--GNQENEKVDRIA 141
H G+ N+ DR A
Sbjct: 124 PAHQVDGDPLNDAADRAA 141
>gi|289809671|ref|ZP_06540300.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 97
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/96 (60%), Positives = 73/96 (76%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT 101
C+V L TDS YV +G +QWI W++ GWKT++K+T
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKET 97
>gi|50955134|ref|YP_062422.1| ribonuclease H [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951616|gb|AAT89317.1| ribonuclease H [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 292
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + E+ +GG TNN ELMA I L + +
Sbjct: 2 TIVAAADGSALGNPGPSGWAWYVDD---ERWSAGGWPHGTNNMGELMAVIDLLESTAHQD 58
Query: 68 K-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS YV ++W+ W++ GW+ S+ V N +L + W+K
Sbjct: 59 DDLRILCDSQYVINSVTKWMPGWKRKGWRKSNGSPVLNRELLERLDRGLQGRSYTFEWVK 118
Query: 127 GHAGNQENE 135
GHAG+ NE
Sbjct: 119 GHAGHDLNE 127
>gi|302666316|ref|XP_003024759.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
gi|291188828|gb|EFE44148.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
Length = 435
Score = 87.2 bits (214), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 18/156 (11%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKE----------TTNNRMELMA 55
+ YTDG+ N G GV + S TN R EL A
Sbjct: 256 LKIYTDGSALRNGTSRARAGVGVYFGPDDESLFSSLSSSRNVSEPLAGSRQTNQRAELTA 315
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+AL V ++TDS Y + W WQ+N W TS +K V+N DL +
Sbjct: 316 ISRALDIAPKHRDVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKI 375
Query: 116 AQHK-----VDLYWIKGHAGNQENEKVDRIARNAAV 146
+ K W+KGH + NE DR+A N A
Sbjct: 376 EERKSLKVKTLFEWVKGHNKDAGNEAADRLAVNGAN 411
>gi|195953035|ref|YP_002121325.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
gi|195932647|gb|ACG57347.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
Length = 153
Score = 87.2 bits (214), Expect = 6e-16, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG-----KEKIISGGEKETTNNRMELMAAIKALTA 62
E+ YTDG+C GNPG GG+ +L+ KEKII G E TTNNRMEL A I+AL A
Sbjct: 2 EIKIYTDGSCLGNPGAGGYCAILKAIKNGKVVKEKIIKGTEANTTNNRMELKAVIEALKA 61
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K K+ +YTDS YV G K N W D K +KN DLW + E ++
Sbjct: 62 LSKKDQKITIYTDSQYVANGI-----KLWLNNWIKKDFKGIKNEDLWKELYELLKNQNIE 116
Query: 122 LYWIKGHAGNQE-----NEKVDRIARNAAVSFKNK 151
+ W++GH N+ N D+IA+ A+ +
Sbjct: 117 VVWLRGHQKNKGDDHDTNNLCDKIAKEEAMKVIKE 151
>gi|262170795|ref|ZP_06038473.1| ribonuclease HI [Vibrio mimicus MB-451]
gi|261891871|gb|EEY37857.1| ribonuclease HI [Vibrio mimicus MB-451]
Length = 131
Score = 87.2 bits (214), Expect = 6e-16, Method: Composition-based stats.
Identities = 63/118 (53%), Positives = 85/118 (72%)
Query: 30 LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKW 89
+RYK EK ++ G + TTNNRME++AA+ AL LK PC+V+L TDS YV +G +QWI W
Sbjct: 1 MRYKQVEKTLARGYRLTTNNRMEMLAAVVALQTLKEPCRVVLTTDSQYVRQGITQWIHNW 60
Query: 90 QQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ GWKT+DKK VKN DLW +A+H+V+ W+KGHAG++ENE D +AR AA +
Sbjct: 61 KLRGWKTADKKPVKNADLWQALDRETARHQVEWRWVKGHAGHRENEMCDELARQAAEN 118
>gi|322791341|gb|EFZ15831.1| hypothetical protein SINV_13418 [Solenopsis invicta]
Length = 154
Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTAL 63
V+ +TDGACS N G GV + + E TNN E+ A
Sbjct: 14 VNVFTDGACSSNGYKNARAGIGVWFKDNHPLNVSKPVEGRCTNNMAEIQAVTVAARQAKK 73
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K+ + TDS ++ ++W+ W++ GW T++ K V N ++ +
Sbjct: 74 AGIKKLKINTDSKFLISCITKWMPNWKKKGWITANNKPVINKTELLEMERELESLTIAWN 133
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+ GH G NE D++A+
Sbjct: 134 HVNGHVGIYGNEMADKLAKEG 154
>gi|321251952|ref|XP_003192235.1| ribonuclease H [Cryptococcus gattii WM276]
gi|317458703|gb|ADV20448.1| Ribonuclease H, putative [Cryptococcus gattii WM276]
Length = 324
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
+ YTDG+ GN G GV +G+ + E+ TNNR EL+A I+A+
Sbjct: 123 LVVYTDGSARGNGQVGSRAGAGVWWGSQGEASKQNWAERVPGEPQTNNRGELLAVIRAIE 182
Query: 62 ALKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV----EASA 116
+P + + DS Y + W+ KW N ++ S+++ V NIDL +
Sbjct: 183 RCPFPDIPLEVRCDSQYTISCMTIWLPKWMNNNFRNSNRQEVVNIDLIKHLLVLLRRRGP 242
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++ H+G + NE DR+AR
Sbjct: 243 AGRVKFKYVPAHSGVEGNEAADRLARTG 270
>gi|213021701|ref|ZP_03336148.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 97
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/91 (61%), Positives = 68/91 (74%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L++V +TDG+C GNPGPGG+G +LRY+G EK S G TTNNRMELMAAI AL ALK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELMAAIVALEALKE 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKT 96
C+V L TDS YV +G +QWI W++ GWKT
Sbjct: 62 HCEVTLSTDSQYVRQGITQWIHNWKKRGWKT 92
>gi|71278157|ref|YP_268439.1| ribonuclease HI [Colwellia psychrerythraea 34H]
gi|71143897|gb|AAZ24370.1| ribonuclease HI [Colwellia psychrerythraea 34H]
Length = 272
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISG-GEKETTNNRMELMAAIKAL 60
++ Y DGACS NPG G G + + G TNN EL + A
Sbjct: 95 PNGPSDIEIYCDGACSPNPGKSGTGLAVYELGKVTSLYYGLYLPNGTNNTAELSGMLSAF 154
Query: 61 TALKYP------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
++ + + +DS Y ++W K W+ GW + +KN+ L +
Sbjct: 155 QIAQHFIDKNSEQSICILSDSKYSIDSITKWAKGWKAKGWTRGKGEEIKNLALIQQCYAL 214
Query: 115 S--AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
K+ + +KGHA + NE DR+A A +
Sbjct: 215 YKTMHTKITIRHVKGHANIEGNELADRMAVLARKQQQ 251
>gi|163814030|ref|ZP_02205422.1| hypothetical protein COPEUT_00183 [Coprococcus eutactus ATCC 27759]
gi|158450479|gb|EDP27474.1| hypothetical protein COPEUT_00183 [Coprococcus eutactus ATCC 27759]
Length = 160
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDG+ GNP G +L+Y K E+ S G +TTNNRMELMAAI L
Sbjct: 2 DVILYTDGSARGNPNGPGGYGAVLQYVDASGKLHEREYSQGYIKTTNNRMELMAAIAGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LY+DS Y+ F+Q + + VKN DLW + + A H V
Sbjct: 62 ALIKPCNVKLYSDSQYLCNAFNQHWIEGWIKKGWKRGKNEPVKNRDLWERLLVAKKPHNV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ W+KGHAGN NE+ D +A AA
Sbjct: 122 EFLWVKGHAGNPGNERCDILATAAAD 147
>gi|254565827|ref|XP_002490024.1| Ribonuclease H1 [Pichia pastoris GS115]
gi|238029820|emb|CAY67743.1| Ribonuclease H1 [Pichia pastoris GS115]
gi|328350430|emb|CCA36830.1| ribonuclease HI [Pichia pastoris CBS 7435]
Length = 274
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRM------ELMAAIKAL 60
YTDGA GN GG+GV + I TN R + + I+
Sbjct: 118 IIYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDALIIIEKD 177
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK---------F 111
A + TDS Y ++W+ KW+QN W+T+ +
Sbjct: 178 LASGSKKHYTIRTDSRYTINSITKWVTKWKQNDWRTATGPVQNRDLIEPCTNLIESVNSK 237
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +++ ++KGH+G+ NE D++A A
Sbjct: 238 YKELGMPPLNIEYVKGHSGDYGNEMADKLATAGAD 272
>gi|328792978|ref|XP_395566.3| PREDICTED: ribonuclease H1 [Apis mellifera]
Length = 278
Score = 86.8 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTAL 63
V+ YTDGACS N G GV I TNN E+ A
Sbjct: 134 VNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIAAKQAKK 193
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + TDS ++ + W+ KW++NGWKT + K V N ++ A V
Sbjct: 194 AGIKNLKINTDSQFLISCINNWMPKWKRNGWKTFNNKPVINKIELLEMENALKSLNVIWN 253
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+ GHAG NE D++AR +
Sbjct: 254 HVNGHAGIYGNEMADKLARAGCSKY 278
>gi|167957032|ref|ZP_02544106.1| ribonuclease HI [candidate division TM7 single-cell isolate TM7c]
Length = 141
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ S NPGPGG+ V+ + I+ + ETTN RME A I AL
Sbjct: 2 ITYYTDGSASPNPGPGGFAVI--RDLQPWILGSEDGETTNIRMEGKALIAALRD-ADGAP 58
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS + ++W WQQ G T +KN+D+ + E AQ + DL W++GH
Sbjct: 59 CAIYTDSEFWINVVTKWAPGWQQRG-WTKKGGEIKNLDIVQELYELYAQSQADLRWVRGH 117
Query: 129 AGNQENEKVDRIARNAAVSFK 149
G++ NE D A A +
Sbjct: 118 EGDEGNELADEWANRAREGER 138
>gi|330446313|ref|ZP_08309965.1| RNase H family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490504|dbj|GAA04462.1| RNase H family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 255
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELM------AAIKALT 61
++ +TDG C NPG G G+ + + + G A I A
Sbjct: 86 QIKIFTDGGCDPNPGKAGSGLAVYNNNQLSELWFGLFNPNGTNNTAELNALNQALIMAQN 145
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKV 120
++ V ++ DS Y + +QW WQ+NGWK + + + F + + + K+
Sbjct: 146 MIEKNQTVAIFCDSRYSIQCITQWAVTWQKNGWKKAGGEIKNLDLIQPMFELYQALKSKI 205
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
++ + GH G + NE DR++ A
Sbjct: 206 QIHHVNGHVGIEGNELADRMSILAVDK 232
>gi|50843189|ref|YP_056416.1| ribonuclease H [Propionibacterium acnes KPA171202]
gi|50840791|gb|AAT83458.1| ribonuclease H [Propionibacterium acnes KPA171202]
gi|315106151|gb|EFT78127.1| ribonuclease HI [Propionibacterium acnes HL030PA1]
Length = 300
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W+++GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|302548481|ref|ZP_07300823.1| ribonuclease HI (RNase HI) [Streptomyces hygroscopicus ATCC 53653]
gi|302466099|gb|EFL29192.1| ribonuclease HI (RNase HI) [Streptomyces himastatinicus ATCC 53653]
Length = 240
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTALKY 65
++ A DGA GNPGP W ++ G E + +G TNN EL A + L A
Sbjct: 7 QIIAACDGASKGNPGPAAWAWVIADTGGEIGRWEAGPLGAATNNVAELTALQELLEATDP 66
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS Y K + W+ W++ GWKT+ V N L M+ E VD ++
Sbjct: 67 ALPLEVRMDSQYAMKAVTTWLPGWRRKGWKTASGSPVANQGLVMRIDELLKDRTVDFVYV 126
Query: 126 KGHA--GNQENEKVDRIARNAAVSFK 149
H G+ N DR A + A + +
Sbjct: 127 PAHQVDGDPFNAAADRAASHTARTQQ 152
>gi|218507570|ref|ZP_03505448.1| ribonuclease H [Rhizobium etli Brasil 5]
Length = 87
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 66/85 (77%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ V +TDGACSGNPGPGGWG +LRY EK + GGE +TTNNRMEL+AAI AL ALK
Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGDVEKELCGGEADTTNNRMELLAAISALQALKT 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQ 90
PC+V LYTDS+YV G S+WI W+
Sbjct: 61 PCEVDLYTDSAYVKDGISKWIFGWK 85
>gi|269217761|ref|ZP_06161615.1| ribonuclease HI [Actinomyces sp. oral taxon 848 str. F0332]
gi|269212696|gb|EEZ79036.1| ribonuclease HI [Actinomyces sp. oral taxon 848 str. F0332]
Length = 292
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
TDGACSGNPGPGGW + + + GG TTNN MEL A ++AL + +
Sbjct: 152 IVATDGACSGNPGPGGWAWV--EQVTGERDCGGAAHTTNNAMELTALVRALEHVGPQPDL 209
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKG 127
L+ DS Y K + W K W++ GW+ SD V N DL + +E + ++ W+KG
Sbjct: 210 LMRIDSQYAIKAMTVWAKAWRRKGWRKSDGAPVANRDLVERLLELYEGRQGRTEVEWVKG 269
Query: 128 HAGNQENEKVDRI 140
H+G+ NE VD +
Sbjct: 270 HSGDAANELVDSM 282
>gi|126327060|ref|XP_001381443.1| PREDICTED: similar to ribonuclease H1 [Monodelphis domestica]
Length = 273
Score = 86.1 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 10 HAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
YTDG CS G GV + TN R E+ AA KAL +
Sbjct: 128 VVYTDGCCSSKGKKPRAGIGVYWGPGHPLNVGDRLTGRQTNQRAEIHAACKALEQAKDQN 187
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
K++LYT S G + IK W++NGWKTS K V N D ++K + + +
Sbjct: 188 INKLVLYTYSMCTVNGITNRIKDWKKNGWKTSAGKKVSNKDDFVKLDRLTRGIDIQWIHV 247
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
H+ + NE+ D++AR A
Sbjct: 248 PCHSALEGNEEADKLAREGAKK 269
>gi|182682900|ref|YP_001837024.1| ribonuclease H [Enterobacteria phage EPS7]
gi|182630612|gb|ACB97544.1| ribonuclease H [Enterobacteria phage EPS7]
Length = 158
Score = 86.1 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTA- 62
+ H YTDGAC GNPG G WG ++ ++I SG +TTNN MEL A ++ L
Sbjct: 1 MSVFHIYTDGACKGNPGLGAWGFVVYNDNDDRIGSKSGFSPKTTNNEMELTAIVEVLRWS 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM------KFVEAS 115
K V++YTDS+Y G W+ WQ+ GWK D +T N++LW +
Sbjct: 61 TKKDNRPVIIYTDSAYCKNGMESWMWSWQKKGWKKGDGETPLNLELWQEAFKLTQQYINF 120
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIAR 142
+KGH+G + NE+VD +
Sbjct: 121 HDTNPTFVKVKGHSGIRGNEEVDALCN 147
>gi|90413838|ref|ZP_01221825.1| hypothetical ribonuclease HI [Photobacterium profundum 3TCK]
gi|90325149|gb|EAS41652.1| hypothetical ribonuclease HI [Photobacterium profundum 3TCK]
Length = 249
Score = 86.1 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKA-----LT 61
EV+ Y DGAC NPG G GV + R ++ G N + A+
Sbjct: 79 EVNIYCDGACDPNPGKSGSGVAVYRDGALAELWYGLYNPMGTNNTAELNALHQSLLIAKQ 138
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID--LWMKFVEASAQHK 119
++ +V + DS Y + W W+ GWK +KN++ + + +++
Sbjct: 139 EIEKGLRVQVLADSQYAINCLTLWAYSWKTKGWKRKVAGDIKNLELIQQAHALYDTIKNR 198
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + +K H G + NE DR++ A +
Sbjct: 199 VVVSHVKAHIGVEGNELADRMSVYGADQEQ 228
>gi|325962243|ref|YP_004240149.1| RNase HI [Arthrobacter phenanthrenivorans Sphe3]
gi|323468330|gb|ADX72015.1| RNase HI [Arthrobacter phenanthrenivorans Sphe3]
Length = 333
Score = 86.1 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
+ A DG+ GNPGP GW + ++ +GG TNN+ ELMA + A
Sbjct: 2 TITAAADGSALGNPGPAGWAWYV---NEDCWRAGGWPHGTNNQGELMAVLDLFRATAHVP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS YV ++W+ W++ GW+ +D K V N+DL + A K W+
Sbjct: 59 QEDLRILCDSQYVINSITKWMPGWKRKGWRKADGKPVLNVDLLKELDRELAGRKYTFEWV 118
Query: 126 KGHAGNQEN 134
KGHAG+ N
Sbjct: 119 KGHAGHDLN 127
>gi|311977680|ref|YP_003986800.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
gi|308204742|gb|ADO18543.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
Length = 306
Score = 86.1 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
R + +TDG+C GN G G G+ + I +K N+ + AI
Sbjct: 88 RNITVFTDGSCLGNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAIQY 147
Query: 64 K------YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
CKV++ TDS+Y ++W + +N W + + N + + E
Sbjct: 148 IDDNFDLNKCKVMIKTDSTYSVNSITKWAEGHSRNDWCKRTGEPIANREFIQEIYEYYQN 207
Query: 118 HKVDLYWIKGHAGNQE-----NEKVDRIARNAAV-SFKNK 151
+D W++ H G + N + D +A +AA + ++K
Sbjct: 208 FNIDFEWVEAHTGQTDSESIANAQADFLANSAAKRAARDK 247
>gi|54309062|ref|YP_130082.1| ribonuclease HI [Photobacterium profundum SS9]
gi|46913494|emb|CAG20280.1| hypothetical ribonuclease HI [Photobacterium profundum SS9]
Length = 249
Score = 86.1 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKA-----LT 61
EV+ Y DGAC NPG G GV + R ++ G N + A+
Sbjct: 79 EVNIYCDGACDPNPGKSGSGVAVYRDGALAELWYGLYNPIGTNNTAELNALHQSLLIAKQ 138
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID--LWMKFVEASAQHK 119
++ +V + DS Y + W W+ GWK +KN++ + + +++
Sbjct: 139 EIEKGLRVQVLADSQYAINCLTLWAYSWKTKGWKRKVAGDIKNLELIQQAHALYDTIKNR 198
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + +K H G + NE DR++ A +
Sbjct: 199 VVVSHVKAHIGVEGNELADRMSVYGADQEQ 228
>gi|88857533|ref|ZP_01132176.1| ribonuclease HI [Pseudoalteromonas tunicata D2]
gi|88820730|gb|EAR30542.1| ribonuclease HI [Pseudoalteromonas tunicata D2]
Length = 253
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKA 59
K + Y DGACS NPG G G+ + + + + ++ TNN EL+ + A
Sbjct: 77 TPKSQHPIAIYCDGACSPNPGKAGTGIAIYQQQQLSDLWYGLYDEHGTNNSAELLGLLMA 136
Query: 60 LT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+ V + +DS Y ++W + WQ+ GW + +KN+ L + +
Sbjct: 137 FRIAKTFVDRNLTVEVLSDSRYSIDCITKWAEGWQKKGWTRGKGEEIKNLALIKECFNSY 196
Query: 116 A--QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+H + + ++KGHA + NE DR+A A S + ++
Sbjct: 197 KSLKHAIAISYVKGHANIEGNELADRMAVLARNSKQIEL 235
>gi|312213605|emb|CBX93607.1| hypothetical protein [Leptosphaeria maculans]
Length = 460
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALK 64
+ YTDG+ GN G G GV + + + TN R EL A +AL +
Sbjct: 234 IIVYTDGSSLGNGRTGAVAGVGVYFGPRDPRNVSEPLRGDRQTNQRAELTAVARALDHIP 293
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD--- 121
+ TDS+Y K ++W KW N W+ + K V+N DL + + +
Sbjct: 294 IDRSAEIVTDSNYSIKCLTEWCNKWMANNWRNAAGKPVENRDLIEPIIGRIRERTLCKAE 353
Query: 122 --LYWIKGHAGNQENEKVDRIARNA 144
WIKGHA ++ N D +A
Sbjct: 354 TKFRWIKGHANDKGNMAADELAVAG 378
>gi|196010473|ref|XP_002115101.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
gi|190582484|gb|EDV22557.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
Length = 173
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
Y DG C N G G+ Y + + TN R EL+AA KAL +
Sbjct: 29 IVYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDH 88
Query: 67 C--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + TDS Y + WI KW++N WKTS VKN + +K ++Q +V
Sbjct: 89 NLETIEIRTDSMYTINVVTNWINKWKRNEWKTSSGDEVKNKEDIVKLDHLNSQLRVKWTH 148
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
I+ HAG+ NE D++A+ A +
Sbjct: 149 IRSHAGDVGNEMADKLAKAGAQA 171
>gi|289427625|ref|ZP_06429337.1| ribonuclease HI [Propionibacterium acnes J165]
gi|295131253|ref|YP_003581916.1| ribonuclease HI [Propionibacterium acnes SK137]
gi|289159116|gb|EFD07308.1| ribonuclease HI [Propionibacterium acnes J165]
gi|291375924|gb|ADD99778.1| ribonuclease HI [Propionibacterium acnes SK137]
gi|313763265|gb|EFS34629.1| ribonuclease HI [Propionibacterium acnes HL013PA1]
gi|313773243|gb|EFS39209.1| ribonuclease HI [Propionibacterium acnes HL074PA1]
gi|313808698|gb|EFS47152.1| ribonuclease HI [Propionibacterium acnes HL087PA2]
gi|313810332|gb|EFS48048.1| ribonuclease HI [Propionibacterium acnes HL083PA1]
gi|313812159|gb|EFS49873.1| ribonuclease HI [Propionibacterium acnes HL025PA1]
gi|313814706|gb|EFS52420.1| ribonuclease HI [Propionibacterium acnes HL059PA1]
gi|313817878|gb|EFS55592.1| ribonuclease HI [Propionibacterium acnes HL046PA2]
gi|313819791|gb|EFS57505.1| ribonuclease HI [Propionibacterium acnes HL036PA1]
gi|313823449|gb|EFS61163.1| ribonuclease HI [Propionibacterium acnes HL036PA2]
gi|313824922|gb|EFS62636.1| ribonuclease HI [Propionibacterium acnes HL063PA1]
gi|313828252|gb|EFS65966.1| ribonuclease HI [Propionibacterium acnes HL063PA2]
gi|313830176|gb|EFS67890.1| ribonuclease HI [Propionibacterium acnes HL007PA1]
gi|313833099|gb|EFS70813.1| ribonuclease HI [Propionibacterium acnes HL056PA1]
gi|314914474|gb|EFS78305.1| ribonuclease HI [Propionibacterium acnes HL005PA4]
gi|314917798|gb|EFS81629.1| ribonuclease HI [Propionibacterium acnes HL050PA1]
gi|314919475|gb|EFS83306.1| ribonuclease HI [Propionibacterium acnes HL050PA3]
gi|314925900|gb|EFS89731.1| ribonuclease HI [Propionibacterium acnes HL036PA3]
gi|314930234|gb|EFS94065.1| ribonuclease HI [Propionibacterium acnes HL067PA1]
gi|314957044|gb|EFT01150.1| ribonuclease HI [Propionibacterium acnes HL027PA1]
gi|314957659|gb|EFT01762.1| ribonuclease HI [Propionibacterium acnes HL002PA1]
gi|314960729|gb|EFT04830.1| ribonuclease HI [Propionibacterium acnes HL002PA2]
gi|314968948|gb|EFT13046.1| ribonuclease HI [Propionibacterium acnes HL037PA1]
gi|314972966|gb|EFT17062.1| ribonuclease HI [Propionibacterium acnes HL053PA1]
gi|314975483|gb|EFT19578.1| ribonuclease HI [Propionibacterium acnes HL045PA1]
gi|314979439|gb|EFT23533.1| ribonuclease HI [Propionibacterium acnes HL072PA2]
gi|314984229|gb|EFT28321.1| ribonuclease HI [Propionibacterium acnes HL005PA1]
gi|314986025|gb|EFT30117.1| ribonuclease HI [Propionibacterium acnes HL005PA2]
gi|314988808|gb|EFT32899.1| ribonuclease HI [Propionibacterium acnes HL005PA3]
gi|315079930|gb|EFT51906.1| ribonuclease HI [Propionibacterium acnes HL078PA1]
gi|315083260|gb|EFT55236.1| ribonuclease HI [Propionibacterium acnes HL027PA2]
gi|315086969|gb|EFT58945.1| ribonuclease HI [Propionibacterium acnes HL002PA3]
gi|315089894|gb|EFT61870.1| ribonuclease HI [Propionibacterium acnes HL072PA1]
gi|315096777|gb|EFT68753.1| ribonuclease HI [Propionibacterium acnes HL038PA1]
gi|315097847|gb|EFT69823.1| ribonuclease HI [Propionibacterium acnes HL059PA2]
gi|315100752|gb|EFT72728.1| ribonuclease HI [Propionibacterium acnes HL046PA1]
gi|315109300|gb|EFT81276.1| ribonuclease HI [Propionibacterium acnes HL030PA2]
gi|327325338|gb|EGE67143.1| ribonuclease H [Propionibacterium acnes HL096PA2]
gi|327325499|gb|EGE67302.1| ribonuclease H [Propionibacterium acnes HL096PA3]
gi|327443769|gb|EGE90423.1| ribonuclease HI [Propionibacterium acnes HL043PA1]
gi|327449165|gb|EGE95819.1| ribonuclease HI [Propionibacterium acnes HL043PA2]
gi|327449505|gb|EGE96159.1| ribonuclease HI [Propionibacterium acnes HL013PA2]
gi|327451347|gb|EGE98001.1| ribonuclease HI [Propionibacterium acnes HL087PA3]
gi|327452138|gb|EGE98792.1| ribonuclease HI [Propionibacterium acnes HL083PA2]
gi|328752393|gb|EGF66009.1| ribonuclease HI [Propionibacterium acnes HL087PA1]
gi|328755045|gb|EGF68661.1| ribonuclease HI [Propionibacterium acnes HL025PA2]
gi|328755906|gb|EGF69522.1| ribonuclease HI [Propionibacterium acnes HL020PA1]
gi|328761054|gb|EGF74605.1| ribonuclease H [Propionibacterium acnes HL099PA1]
gi|332676126|gb|AEE72942.1| ribonuclease H [Propionibacterium acnes 266]
Length = 300
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|149924708|ref|ZP_01913057.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
gi|149814435|gb|EDM74027.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
Length = 234
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMA---AIKALTAL 63
+ +TDGACSGNPGP G GV + IS + TNN EL A A++A+T
Sbjct: 91 DTIIIHTDGACSGNPGPAGLGVHIVRPDSITEISEFIGDATNNVAELKAILRALEAITDE 150
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ LYTDS + K + K + + ++L
Sbjct: 151 EKERRIHLYTDSGWSLGVLIGGWKAKKNVALIEKIKTKLPELP------------NIELL 198
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
+KGHAG + NE+ D +A A
Sbjct: 199 KVKGHAGLEGNEEADALATKAVR 221
>gi|324523182|gb|ADY48204.1| Ribonuclease H1 [Ascaris suum]
Length = 250
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAI--KALTAL 63
+TDGACS N G GV + + TNNR EL A I
Sbjct: 104 VVFTDGACSSNGHHGAKAGIGVFWGDDHPDNVSEPLISGPPTNNRAELSAVITALRTACE 163
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++++ TDS+ + K + WIK W++NGWKT++ VKN DL ++ + + KV
Sbjct: 164 RNFSRLIICTDSNLLIKSMNSWIKTWRKNGWKTANGGDVKNKDLIVELDKLLEKVKVHFK 223
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+ GHAG NEK D +ARN A+ +
Sbjct: 224 HVAGHAGIYGNEKADELARNGALRY 248
>gi|315122018|ref|YP_004062507.1| ribonuclease H [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495420|gb|ADR52019.1| ribonuclease H [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 138
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 87/124 (70%), Positives = 108/124 (87%)
Query: 29 LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKK 88
K KI+SGGEK+TTNNRMELMAAI ALT+LKYPCK+ L+TDSSYVHKGFSQWIKK
Sbjct: 15 YYYDTKKRKILSGGEKDTTNNRMELMAAISALTSLKYPCKISLFTDSSYVHKGFSQWIKK 74
Query: 89 WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
W+QNGW+TS+K+ VKN DLW +FV+AS +H+++LYWIKGHAG++ENE VD+IAR A++ F
Sbjct: 75 WEQNGWQTSEKQPVKNADLWKRFVKASEKHEIELYWIKGHAGHRENEIVDQIAREASIVF 134
Query: 149 KNKI 152
K+KI
Sbjct: 135 KSKI 138
>gi|212635109|ref|YP_002311634.1| ribonuclease H [Shewanella piezotolerans WP3]
gi|212556593|gb|ACJ29047.1| Ribonuclease H [Shewanella piezotolerans WP3]
Length = 183
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 79/104 (75%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+++ +TDG+C GNPGPGG+G++++YK ++GG TTNNRME++A I AL ALK
Sbjct: 25 LKQISIFTDGSCLGNPGPGGYGIVMKYKKHTHELAGGFALTTNNRMEMLAPIVALEALKV 84
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
PC+V+L +DS Y+ +G +QWI W++NGW TS K+ VKN+DLW
Sbjct: 85 PCQVILTSDSQYMRQGITQWIHGWKRNGWVTSTKQAVKNVDLWH 128
>gi|301611092|ref|XP_002935076.1| PREDICTED: ribonuclease H1-like [Xenopus (Silurana) tropicalis]
Length = 204
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
R YTDG C N G G GV + + + + TN R E+ AA A+
Sbjct: 59 RSAEVYTDGCCYRNGQYGANGGIGVYWGPEDSRNVSAKLKGRQTNQRAEIEAACTAVEQA 118
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + TDS + KG +QW+ +W++NGWKT D + V N + K +A +
Sbjct: 119 RDDNITSLNINTDSKFTIKGMTQWVPRWKENGWKTIDGRDVINKQDFQKLDKACENMDIK 178
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
++ GH+G+ N++ D++A+ +
Sbjct: 179 WNYVPGHSGSVGNDRADQLAKAGSRK 204
>gi|282855069|ref|ZP_06264401.1| ribonuclease HI [Propionibacterium acnes J139]
gi|282581657|gb|EFB87042.1| ribonuclease HI [Propionibacterium acnes J139]
gi|314965001|gb|EFT09100.1| ribonuclease HI [Propionibacterium acnes HL082PA2]
gi|314982127|gb|EFT26220.1| ribonuclease HI [Propionibacterium acnes HL110PA3]
gi|315103868|gb|EFT75844.1| ribonuclease HI [Propionibacterium acnes HL050PA2]
gi|327325413|gb|EGE67217.1| ribonuclease H [Propionibacterium acnes HL103PA1]
Length = 300
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W+++GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|319440943|ref|ZP_07990099.1| RNase HI [Corynebacterium variabile DSM 44702]
Length = 287
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK----ALTAL 63
+ A DG+ GNPGP GW + +GG TNN EL A + A
Sbjct: 2 TITAAADGSALGNPGPAGWAWYIDDD---TWRAGGWPHGTNNMGELKAVLDLLESTADAG 58
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ +L+ DS YV ++W+ W++ GWK D K V N+DL A +V
Sbjct: 59 RTDEDLLVLCDSQYVINSVTKWMPGWKKKGWKKRDGKPVLNVDLMKAIDAAMQGRRVRFE 118
Query: 124 WIKGHAGNQENE 135
W+KGHAG+ NE
Sbjct: 119 WVKGHAGHPMNE 130
>gi|237803579|ref|ZP_04591164.1| ribonuclease H [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025561|gb|EGI05617.1| ribonuclease H [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 105
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 72/103 (69%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V +TDGAC GNPGPGGWG LL KG EK + GGE TTNNRMEL AI+ L LK P
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELTGAIRGLEELKRP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
C+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW
Sbjct: 63 CEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQ 105
>gi|299756462|ref|XP_001829350.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
gi|298411687|gb|EAU92310.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
Length = 539
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ YTDGA GN PG G GV + I + TNNR EL+A ++ L
Sbjct: 97 LVVYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVLETAPI 156
Query: 66 -PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----K 119
+L+ +DS Y W+ W + GWK + + VKN + + K
Sbjct: 157 SKTPLLIKSDSQYSMNCLQVWLPGWVKRGWKNAKGEPVKNAPIIRLISAHLDRRAQLGQK 216
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V + +++GH+GN N+ D A
Sbjct: 217 VRMVYVEGHSGNVGNDGADAQANAG 241
>gi|289425015|ref|ZP_06426794.1| ribonuclease HI [Propionibacterium acnes SK187]
gi|289154714|gb|EFD03400.1| ribonuclease HI [Propionibacterium acnes SK187]
Length = 300
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|58258539|ref|XP_566682.1| ribonuclease H [Cryptococcus neoformans var. neoformans JEC21]
gi|57222819|gb|AAW40863.1| ribonuclease H, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 321
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
+ YTDG+ GN G GV +G+ + E+ TNNR EL+A I+A+
Sbjct: 120 LVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRAIE 179
Query: 62 ALKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-- 118
+P + + DS Y + W+ KW N ++ S K+ V N DL + +
Sbjct: 180 RCPFPDIPLEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRRRGA 239
Query: 119 --KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++ H+G + NE DR+AR
Sbjct: 240 AGRVKFKYVPAHSGVEGNEAADRLARTG 267
>gi|134106645|ref|XP_778333.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261036|gb|EAL23686.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 324
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
+ YTDG+ GN G GV +G+ + E+ TNNR EL+A I+A+
Sbjct: 123 LVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRAIE 182
Query: 62 ALKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-- 118
+P + + DS Y + W+ KW N ++ S K+ V N DL + +
Sbjct: 183 RCPFPDIPLEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRRRGA 242
Query: 119 --KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++ H+G + NE DR+AR
Sbjct: 243 AGRVKFKYVPAHSGVEGNEAADRLARTG 270
>gi|314924212|gb|EFS88043.1| ribonuclease HI [Propionibacterium acnes HL001PA1]
Length = 300
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W+++GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|50543514|ref|XP_499923.1| YALI0A09878p [Yarrowia lipolytica]
gi|49645788|emb|CAG83850.1| YALI0A09878p [Yarrowia lipolytica]
Length = 276
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 9/147 (6%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT---- 61
+ YTDGA N G+G+ ++ + N+ + AI
Sbjct: 129 IPVYTDGASRNNQSSNAKAGYGIFFGNGSEDNVSKPLAGMQQTNQRAELTAIYEACKIIK 188
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--ASAQHK 119
+ TDS Y +W W++NGWK S V N D+ S +
Sbjct: 189 DRNDRRYYDIRTDSQYSISCLKEWGMNWERNGWKNSKGADVSNQDIIKPARNLLISLGDR 248
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L +KGH+ + N+ D +A A
Sbjct: 249 VRLTKVKGHSSDPGNDAADALAVRGAE 275
>gi|315090366|gb|EFT62342.1| ribonuclease HI [Propionibacterium acnes HL110PA4]
Length = 300
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNKMGELKAVLDVLRATRDANE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W+++GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|221113571|ref|XP_002164284.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 255
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 6/145 (4%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
Y+DG C N GG GV + + + E N+ + A
Sbjct: 110 VVYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIE 169
Query: 67 CK---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V L TDS Y K ++WI+ W+ NGWK S V N + ++ E A+ V
Sbjct: 170 MNLPEVELRTDSMYTIKAMTEWIQNWESNGWKNSSGGNVVNKEEMLRLSELCAKISVTWV 229
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
I GH G NE+ D++A A
Sbjct: 230 HIPGHKGVYGNEQADQLANQGAQKI 254
>gi|213965964|ref|ZP_03394154.1| ribonuclease H [Corynebacterium amycolatum SK46]
gi|213951378|gb|EEB62770.1| ribonuclease H [Corynebacterium amycolatum SK46]
Length = 301
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA--IKALTALKYP 66
+ A DG+ NPGP GW + +GG KE TNNR EL A + TA
Sbjct: 3 ITAAVDGSALHNPGPAGWCWYIDDSC---WAAGGWKEGTNNRGELTALAELLRATAHIPD 59
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS YV ++W+ W++ GWK D K V N+D+ + + L W+K
Sbjct: 60 EPLFVLCDSQYVINSVTKWMPGWKRKGWKKRDGKPVLNVDILQDIDQLLVGRNIHLEWVK 119
Query: 127 GHAGNQENE 135
GH+G+ NE
Sbjct: 120 GHSGHDMNE 128
>gi|90578991|ref|ZP_01234801.1| hypothetical ribonuclease HI [Vibrio angustum S14]
gi|90439824|gb|EAS65005.1| hypothetical ribonuclease HI [Vibrio angustum S14]
Length = 255
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKA-----LT 61
E+ +TDG C NPG G G L R ++ G N + A+
Sbjct: 86 EIKIFTDGGCDPNPGKAGSGLALYRENQLSELWFGLYNPQGTNNTAELNALYQALLQAEK 145
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
+ V ++ DS Y + +QW W++NGWK + + + F +
Sbjct: 146 YIAGGISVAIFCDSRYSIQCVTQWAVSWKKNGWKKAGGEIKNLDLIQPMFERYQTIKDMI 205
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+Y + GH G + NE DR++ A
Sbjct: 206 QIYHVNGHVGIEGNELADRMSILAVDE 232
>gi|212636120|ref|YP_002312645.1| ribonuclease H [Shewanella piezotolerans WP3]
gi|212557604|gb|ACJ30058.1| Ribonuclease H [Shewanella piezotolerans WP3]
Length = 256
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 3 SKHLR----EVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAI 57
SK + E+ +TDG C NPG G GV + R ++ G N + A+
Sbjct: 77 SKTMDLSQFELSIFTDGGCEPNPGKAGSGVAVYRSGKLSELWYGLYNANGTNNSAELNAL 136
Query: 58 KALT-----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+K V + +DS Y + W W+ GWK +KN+D+ +
Sbjct: 137 HQAILLADKGIKLGQTVQILSDSQYSINCITNWAYGWKAKGWKRQKPGDIKNLDIIQQSH 196
Query: 113 EASA--QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
E + K+ + + H G + NE DR++ A ++
Sbjct: 197 ELYDSIKDKLSIKHVPAHVGIEGNELADRMSIYAIDKKDSQ 237
>gi|323358972|ref|YP_004225368.1| ribonuclease HI [Microbacterium testaceum StLB037]
gi|323275343|dbj|BAJ75488.1| ribonuclease HI [Microbacterium testaceum StLB037]
Length = 187
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ TDGAC GNPGP GW + +G E TNN EL+ + A+T
Sbjct: 6 PASVDRYVVATDGACKGNPGPAGWAWVGEDG---HWAAGSIPEGTNNIGELLGLLHAITD 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--- 119
++++ DS Y +S W+ ++ GW TS KK V N + + A +
Sbjct: 63 HADVRELVVQADSKYAIDTYSSWMDGHRRRGWVTSAKKPVANRGILEALIAARDTRRAAG 122
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
V L ++GH+G+ N D A A
Sbjct: 123 LPDVVLEHVRGHSGHVLNSWADERAVRA 150
>gi|50543708|ref|XP_500020.1| YALI0A12705p [Yarrowia lipolytica]
gi|49645885|emb|CAG83949.1| YALI0A12705p [Yarrowia lipolytica]
Length = 236
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 8 EVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK----AL 60
V YTDGAC N G G GV + + + N+ + AI +
Sbjct: 87 RVPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELEAIHDAVETI 146
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ--H 118
+ TDS+Y F++W WQQN W TS + V++ DL +
Sbjct: 147 HRRNDGINYEVKTDSAYAQNAFNKWGSNWQQNNWTTSKNEPVQHRDLIEPTLNRLNDLGD 206
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V++ +KGH+GN N+ D++A A
Sbjct: 207 RVEISKVKGHSGNPGNDAADKLAGKGAR 234
>gi|54027598|ref|YP_121840.1| putative RNase HI [Nocardia farcinica IFM 10152]
gi|54019106|dbj|BAD60476.1| putative RNase HI [Nocardia farcinica IFM 10152]
Length = 181
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ TDG+C NPG G G SGG TN EL A ++A+ A P
Sbjct: 2 IIVSTDGSCLRNPG-GAIGWAWVAHQGGASHSGGAATGTNQIAELRAVLEAILAHPGPEP 60
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIK 126
+L+ +DS Y K S+WI W+ NGW+TS VKN++L + A A V W++
Sbjct: 61 LLIESDSLYAIKCASEWINGWRGNGWRTSSGGPVKNVELIKQIDRAIAGRPGPVRFRWVR 120
Query: 127 GHAGNQENEKVDRI 140
GH GN NE+ D +
Sbjct: 121 GHVGNYFNERADAL 134
>gi|325066557|ref|ZP_08125230.1| ribonuclease H [Actinomyces oris K20]
Length = 134
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + +GG + +TNNR EL A ++ L A +
Sbjct: 2 TLTAAADGSSLGNPGPAGWAWYVDDDC---WAAGGWESSTNNRGELTAVLELLRATEAAG 58
Query: 68 ----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++L+ DS YV ++W W++ GW+ +D K V N DL A A V
Sbjct: 59 LAGEELLIQCDSQYVINSLTKWRHGWKKRGWRKADGKPVLNADLVKDLDAALAGRTVRFE 118
Query: 124 WIKGHAGNQENEKVD 138
W++GH G+ NE D
Sbjct: 119 WVRGHVGHPMNEAAD 133
>gi|148978035|ref|ZP_01814582.1| conserved hypothetical ribonuclease HI [Vibrionales bacterium
SWAT-3]
gi|145962719|gb|EDK27993.1| conserved hypothetical ribonuclease HI [Vibrionales bacterium
SWAT-3]
Length = 254
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG--VLLRYKGKEKIISGGEKETTNNRMELMAA----IKALT 61
++ +TDGAC NPG G G V L+ E + TNN EL I A
Sbjct: 85 DIKIFTDGACEPNPGEAGTGLAVYLKNDLTELWYGLYQPMGTNNTAELQGLEQAFILAKE 144
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKV 120
LK V +Y+DS Y ++W W++ GW S + +I + ++
Sbjct: 145 KLKAGLSVAIYSDSKYSIDCITKWASGWEKKGWTKSGGEIKNLDIIKAAYALYQELASQI 204
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+Y + GH G + NE DR++ A S + +
Sbjct: 205 TIYHVNGHVGIEGNELADRMSIVAISSKEQDL 236
>gi|170595213|ref|XP_001902289.1| RNase H family protein [Brugia malayi]
gi|158590103|gb|EDP28857.1| RNase H family protein [Brugia malayi]
Length = 212
Score = 84.9 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKALTA--L 63
YTDGACS N G + Y G++ + + E TNNR EL A I+A+
Sbjct: 63 IVYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMAIQ 122
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++++ TDS+ + + + WI WQ+NGWKTS+ TVKN DL ++ V
Sbjct: 123 RRYHQLIVRTDSNLLIQTMNSWIHGWQKNGWKTSNGTTVKNQDLIIELNGLLKNINVRFE 182
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
+ GH G NEK D++AR A+ +
Sbjct: 183 HVAGHVGIYGNEKADQLAREGALHY 207
>gi|19112918|ref|NP_596126.1| ribonuclease H Rnh1 [Schizosaccharomyces pombe 972h-]
gi|41017812|sp|Q9UST8|RNH1_SCHPO RecName: Full=Ribonuclease H; Short=RNase H
gi|6048295|emb|CAB58158.1| ribonuclease H Rnh1 [Schizosaccharomyces pombe]
Length = 264
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKY 65
Y DG+ N G G GV I E TNNR EL A I AL
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTS- 183
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + +DS+Y K + W+ KW++N +KTS+ + VKN+DL + + + V L ++
Sbjct: 184 -GDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSDRNVSLEYV 242
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+ + N++ D +AR A
Sbjct: 243 KGHSTDYGNQQADMLARRGA 262
>gi|315093649|gb|EFT65625.1| ribonuclease HI [Propionibacterium acnes HL060PA1]
Length = 300
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W+++GW+ D K V N DL + V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDKELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|157374630|ref|YP_001473230.1| putative ribonuclease HI [Shewanella sediminis HAW-EB3]
gi|157317004|gb|ABV36102.1| conserved hypothetical ribonuclease HI [Shewanella sediminis
HAW-EB3]
Length = 251
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKA-----LT 61
+V YTDG C NPG G G + R ++ G N + A+
Sbjct: 81 DVEIYTDGGCEPNPGKAGSGIAVYRNGELSELWYGLYNAFGTNNTAELNALHQALLIAQD 140
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS--AQHK 119
LK V + +DS Y + W W+Q GWK +KN+++ + K
Sbjct: 141 NLKQGKSVHILSDSQYSINCITNWAYGWKQKGWKRKTAGDIKNLEIIQISHAIYEEIKEK 200
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + + H G + NE DR++ A
Sbjct: 201 LQISHVAAHVGIEGNELADRMSIYAID 227
>gi|46401827|ref|YP_006919.1| putative RNaseH ribonuclease [Enterobacteria phage T5]
gi|45775005|gb|AAS77137.1| putative RNaseH ribonuclease [Enterobacteria phage T5]
Length = 158
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA- 62
+ H YTDGAC NPGPG WG ++ ++ SG +TTNN MEL A ++AL
Sbjct: 1 MSVFHVYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWS 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDK------KTVKNIDLWMKFVEAS 115
K +++YTDS+Y G W+ WQ+ GWK +D + + +
Sbjct: 61 VKKDNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINF 120
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIAR 142
+KGH+G NE VD +
Sbjct: 121 HNTNPTFIKVKGHSGISGNEAVDALCN 147
>gi|326632976|ref|YP_004306565.1| ribonuclease H [Enterobacteria phage SPC35]
gi|321272170|gb|ADW80062.1| ribonuclease H [Enterobacteria phage SPC35]
Length = 158
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA- 62
+ H YTDGAC NPGPG WG ++ ++ SG +TTNN MEL A ++AL
Sbjct: 1 MSVFHIYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYNPKTTNNEMELTAIVEALRWS 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDK------KTVKNIDLWMKFVEAS 115
K + +YTDS+Y G W+ WQ+ GWK +D + + +
Sbjct: 61 VKKDNRPIAIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINF 120
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIAR 142
+KGH+G NE VD +
Sbjct: 121 HNTNPTFIKVKGHSGISGNEAVDALCN 147
>gi|84386727|ref|ZP_00989753.1| hypothetical ribonuclease HI [Vibrio splendidus 12B01]
gi|84378533|gb|EAP95390.1| hypothetical ribonuclease HI [Vibrio splendidus 12B01]
Length = 257
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMEL-----MAAIKALT 61
++ +TDGAC NPG G G + + ++ G + N A I A
Sbjct: 88 DIKIFTDGACEPNPGEAGTGLAVYQNNQLTELWYGLYQPVGTNNTAELHGLKQAFILAKE 147
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKV 120
L V +Y DS Y ++W W++ GW S + + + + K+
Sbjct: 148 KLNAGLSVAIYCDSKYSIDCITKWATGWEKKGWTKSGGEIKNLDIIKPAYALYQELASKI 207
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+Y + GH G + NE DR++ A S + ++
Sbjct: 208 TIYHVNGHVGIEGNELADRMSIVAISSKEQQL 239
>gi|307323798|ref|ZP_07603007.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
gi|306890247|gb|EFN21224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
Length = 260
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 4 KHL-REVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ + E+ A DGA GNPGP W ++ E+ +G TNN EL A + L
Sbjct: 29 RRMAEEIIAACDGASKGNPGPAAWAWVIAGTDGALERWEAGPLGTATNNVAELTALQRLL 88
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + DS Y K + W+ W++ GWKTS V N +L M+ E V
Sbjct: 89 ESTDAAVPLEVRMDSQYAMKAVTTWLPGWRKKGWKTSSGSPVANRELVMRIDELLGGRTV 148
Query: 121 DLYWIKGHA--GNQENEKVDRIARNAAVSFK 149
+ ++ H G+ N D+ A + A + +
Sbjct: 149 EFVYVPAHQVDGDPFNAAADQAASHTARTQQ 179
>gi|51512029|gb|AAU05228.1| ribonuclease H [Enterobacteria phage T5]
Length = 162
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA- 62
+ H YTDGAC NPGPG WG ++ ++ SG +TTNN MEL A ++AL
Sbjct: 5 MSVFHVYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWS 64
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDK------KTVKNIDLWMKFVEAS 115
K +++YTDS+Y G W+ WQ+ GWK +D + + +
Sbjct: 65 VKKDNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINF 124
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIAR 142
+KGH+G NE VD +
Sbjct: 125 HNTNPTFIKVKGHSGISGNEAVDALCN 151
>gi|320012422|gb|ADW07272.1| ribonuclease H [Streptomyces flavogriseus ATCC 33331]
Length = 237
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIK 58
MD + + A DGA GNPGP W ++ ++ +G TNN EL A ++
Sbjct: 5 MDER----IIAACDGASKGNPGPAAWAWVVADGQGNPQRWEAGPLGIATNNVAELTALLE 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + + + DS Y ++W+ W++NGWKTS K V N +L + E +
Sbjct: 61 LLRSTDPAVPLEVRMDSQYAMNAVTKWLPGWKRNGWKTSGGKPVANRELVVAIDELLSTR 120
Query: 119 KVDLYWIKGHA--GNQENEKVDRIARNAAVSFK 149
V ++ H G+ N D+ A AVS +
Sbjct: 121 SVTFRYVPAHQVGGDPLNAVADQAASEVAVSQQ 153
>gi|258450519|gb|ACV72189.1| ribonuclease H [uncultured organism]
Length = 140
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 9/145 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ ++ YTDG GNPGP G GV++ S ETTNN E A I+AL L
Sbjct: 1 MNKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDL 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L+ + + Q G + T+K + ++ +
Sbjct: 61 QMFGDKLVDMEVEVRMD---SELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFV 117
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
H ++N + D + A
Sbjct: 118 ----HIPREKNARADELVNEAIDKA 138
>gi|297154278|gb|ADI03990.1| ribonuclease H [Streptomyces bingchenggensis BCW-1]
Length = 233
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ A DGA GNPGP W ++ + +G TNN EL A ++ L A
Sbjct: 4 RIIAACDGASKGNPGPAAWAWVIAGADGAVARWEAGPLGTATNNVAELTALLRLLEATDP 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS Y K + W+ W++ GWKT+ V N DL ++ E V+ ++
Sbjct: 64 AVPLEVRMDSQYAMKAVTTWLPGWRRKGWKTASGSPVANRDLVVRIDELLGGRDVEFVYV 123
Query: 126 KGHA--GNQENEKVDRIARNAAVSFK 149
H G+ N D+ A + A S +
Sbjct: 124 AAHQVGGDPFNAAADQAASDTARSQQ 149
>gi|145637905|ref|ZP_01793549.1| ribonuclease H [Haemophilus influenzae PittHH]
gi|145268905|gb|EDK08864.1| ribonuclease H [Haemophilus influenzae PittHH]
Length = 108
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 66/102 (64%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+++ +TDG+C GNPG GG G +LRYK EK++S G +TTNNRMEL A I+AL LK P
Sbjct: 3 KQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEP 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
C + LY+DS Y+ G ++WI W++N ++ K K
Sbjct: 63 CLITLYSDSQYMKNGITKWIFNWKKNKLESKFWKACKKPRFM 104
>gi|163800730|ref|ZP_02194630.1| conserved hypothetical ribonuclease HI [Vibrio sp. AND4]
gi|159175079|gb|EDP59876.1| conserved hypothetical ribonuclease HI [Vibrio sp. AND4]
Length = 251
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 7/152 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELM------AAIKALT 61
+V YTDGAC NPG G G+ + K + G ++ A + A
Sbjct: 82 DVKIYTDGACEPNPGEAGTGLAVYENNKLTELWYGLYQSFGTNNTAELHGLNQALLLAKE 141
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM-KFVEASAQHKV 120
L V ++ DS Y ++W W++ GW S + + + ++
Sbjct: 142 KLTKGRSVGIFCDSKYSIDCVTKWAYGWEKKGWTKSGGEIKNLDIIKPAYSLYQDISSQI 201
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
++ + GH G + NE DR++ A S +
Sbjct: 202 TIHHVNGHVGIEGNELADRMSIIAIESKDKNL 233
>gi|295094876|emb|CBK83967.1| Ribonuclease HI [Coprococcus sp. ART55/1]
Length = 160
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDG+ GNP G +L++ + E+ S G +TTNNRMELMAAI L
Sbjct: 2 DVILYTDGSARGNPNGPGGYGAVLQFIDAKGQLHEREYSQGYIKTTNNRMELMAAIVGLE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQHKV 120
AL PC V LY+DS Y+ F+Q + + VKN DLW + + A A H V
Sbjct: 62 ALIKPCNVKLYSDSQYLCNAFNQHWIEGWIKKGWKRGKNEPVKNRDLWERLLAAKAPHNV 121
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ W+KGHAGN NE+ D +A AA
Sbjct: 122 EFLWVKGHAGNSGNERCDMLATAAAD 147
>gi|294657094|ref|XP_459412.2| DEHA2E01870p [Debaryomyces hansenii CBS767]
gi|199432442|emb|CAG87623.2| DEHA2E01870p [Debaryomyces hansenii]
Length = 306
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 61/172 (35%), Gaps = 30/172 (17%)
Query: 11 AYTDGACSGNPGP----GGWGVLLRYKGKEK-------IISGGEKETTNNRMELMAAIK- 58
Y DGA GN G+GV K I + TN R EL A
Sbjct: 132 IYVDGASRGNGKIRMPISGYGVFYSASDKRNGAISLNQIDDVHVNKPTNQRAELFAIKHA 191
Query: 59 --------ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI----- 105
K K +Y+DS Y ++W W +N WKTS K V N
Sbjct: 192 LIDIANEIVECNDKVTTKYEIYSDSQYAQSCITKWCDDWMKNNWKTSQGKPVSNKDIISS 251
Query: 106 -----DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ ++ + + ++GH G+ NE DR+A A + +I
Sbjct: 252 VIPILNYINQYYNKHHFGDLQFFHVRGHKGDYGNEMADRLANIGADDMEKEI 303
>gi|296185787|ref|ZP_06854194.1| ribonuclease HI [Clostridium carboxidivorans P7]
gi|296049615|gb|EFG89042.1| ribonuclease HI [Clostridium carboxidivorans P7]
Length = 261
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++D N GG+ ++ +G K+ + + +++ EL A IKA+ LK K
Sbjct: 122 KIFSDACYFENKKYGGFAFIIEDLEGNYKLYTEKVQAIGSSQAELTAVIKAIQLLKDVEK 181
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS YV KG ++WI W+ N +KT + + VKNI+ W+ F ++ W+KGH
Sbjct: 182 IRIVTDSQYVRKGLTEWIPCWKLNDFKTINGEPVKNIENWLLFDNICNGKYIEFQWVKGH 241
Query: 129 AGNQENEKVDRIARNAAVSF 148
+ + EN D AR+AA +
Sbjct: 242 SNHFENSLCDMYARDAATNI 261
>gi|114564336|ref|YP_751850.1| ribonuclease H [Shewanella frigidimarina NCIMB 400]
gi|114335629|gb|ABI73011.1| ribonuclease H [Shewanella frigidimarina NCIMB 400]
Length = 262
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
+V YTDG C NPG G G+ + KG+ + G A IKA
Sbjct: 93 DVVIYTDGGCEPNPGKAGSGMAIYRKGELAELWFGLFNPNGTNNTAELNALHQALIKAKK 152
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK-NIDLWMKFVEASAQHKV 120
L V + +DS Y K +W W+ W + I + + + +
Sbjct: 153 VLDAGETVQIMSDSQYSIKCVCEWAYGWKAKNWTRKTGEIANLEIIKQAHELYDAMKDDL 212
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
L + H G + NE DR++ +A
Sbjct: 213 VLQHVAAHIGIEGNELADRMSIHAID 238
>gi|328766726|gb|EGF76779.1| hypothetical protein BATDEDRAFT_28244 [Batrachochytrium
dendrobatidis JAM81]
Length = 206
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 9 VHAYTDGACSGNPGPGG---WGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALK 64
+ YTDG C N G G+ + I TNNR E+ A I+AL A
Sbjct: 61 IDVYTDGGCRANGTKGAQASIGIWFGHADSRNISERLISPIQTNNRAEMTAVIRALQATT 120
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDL 122
V +Y+DS+YV +G + W+ W+QNGWK K V+N DLW + + V +
Sbjct: 121 SYHHVNIYSDSAYVERGLNAWMPVWKQNGWKGPRNKPVQNQDLWQELDQCMNDRSGTVKI 180
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
W+K H G NE + +A A
Sbjct: 181 LWVKAHVGILGNEGANTLASQA 202
>gi|255524564|ref|ZP_05391518.1| ribonuclease H [Clostridium carboxidivorans P7]
gi|255511717|gb|EET88003.1| ribonuclease H [Clostridium carboxidivorans P7]
Length = 254
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++D N GG+ ++ +G K+ + + +++ EL A IKA+ LK K
Sbjct: 115 KIFSDACYFENKKYGGFAFIIEDLEGNYKLYTEKVQAIGSSQAELTAVIKAIQLLKDVEK 174
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS YV KG ++WI W+ N +KT + + VKNI+ W+ F ++ W+KGH
Sbjct: 175 IRIVTDSQYVRKGLTEWIPCWKLNDFKTINGEPVKNIENWLLFDNICNGKYIEFQWVKGH 234
Query: 129 AGNQENEKVDRIARNAAVSF 148
+ + EN D AR+AA +
Sbjct: 235 SNHFENSLCDMYARDAATNI 254
>gi|327332351|gb|EGE74087.1| ribonuclease H [Propionibacterium acnes HL097PA1]
Length = 300
Score = 83.7 bits (205), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFKWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|170085781|ref|XP_001874114.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651666|gb|EDR15906.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY- 65
Y+DGAC GN G G GV + I + TNNR EL+A + L +
Sbjct: 94 VVYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELIAIARVLESTPRS 153
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK-----FVEASAQHKV 120
+L+ TDS Y F WI W +NGW S K+ VKN + + A + KV
Sbjct: 154 KKPLLIKTDSQYSINCFQNWISNWSRNGWVNSSKEPVKNAGIIRYISALLDLRAKSGQKV 213
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
L ++KGH+G+ N+ D A
Sbjct: 214 RLQYVKGHSGDTGNDGADAQANQG 237
>gi|260903754|ref|ZP_05912076.1| ribonuclease H [Brevibacterium linens BL2]
Length = 223
Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + +GG KE+TNNR ELMA + L +
Sbjct: 2 TIIAAADGSALGNPGPAGWAWYVDDDC---WHAGGWKESTNNRGELMAVLDLLNSTADAG 58
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ ++ DS YV ++W+ W++ GWK +D K V N DL + A +V+ W+K
Sbjct: 59 EDLKVFCDSKYVINALTKWMPGWKRKGWKKADGKDVLNKDLLEQLDSALKGREVEFEWVK 118
Query: 127 GHAGNQENE 135
GH+ + NE
Sbjct: 119 GHSNHAMNE 127
>gi|50552764|ref|XP_503792.1| YALI0E10725p [Yarrowia lipolytica]
gi|49649661|emb|CAG79383.1| YALI0E10725p [Yarrowia lipolytica]
Length = 474
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKY 65
+ DGACS N GP G+G+ + + T+ R EL A +KA ++
Sbjct: 303 QVFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQVIEK 362
Query: 66 PCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ---HK 119
Y +DSSY ++W W+++GWKTS+ K V+N+DL ++ +
Sbjct: 363 KDNGHSYEIMSDSSYAINCLTKWRHDWKKHGWKTSEGKPVENVDLIQDCIKIMDRLVKRG 422
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ L ++ H ++ N++ D +AR + +
Sbjct: 423 IALKKVQAHGDSKGNKRADVLARQGVQVARGHV 455
>gi|294141840|ref|YP_003557818.1| ribonuclease HI [Shewanella violacea DSS12]
gi|293328309|dbj|BAJ03040.1| ribonuclease HI [Shewanella violacea DSS12]
Length = 249
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 8/148 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
+V YTDG C NPG G GV + + G + A + A
Sbjct: 79 DVVIYTDGGCEPNPGKAGSGVAVYKDNALSELWYGLYNSYGTNNSAELNALHQALLLAKE 138
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA--QHK 119
L V + +DS Y + W W+ GWK +KN+D+ + K
Sbjct: 139 HLTAGKTVHIRSDSQYSINCITTWAYGWKTKGWKRKTAGDIKNLDIIQASHALYDELKDK 198
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + H G + NE DR++ A
Sbjct: 199 LIISHVSAHIGIEGNELADRMSIYAIDK 226
>gi|89072972|ref|ZP_01159519.1| hypothetical ribonuclease HI [Photobacterium sp. SKA34]
gi|89051190|gb|EAR56646.1| hypothetical ribonuclease HI [Photobacterium sp. SKA34]
Length = 255
Score = 83.4 bits (204), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
E+ +TDG C NPG G G+ L + + G A ++A
Sbjct: 86 EIKIFTDGGCDPNPGKAGSGLALYRENHLNELWFGLYNPKGTNNTAELNALYQALLQAEK 145
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV- 120
+ V ++ DS Y + +QW W++NGWK S + + + F +
Sbjct: 146 YIAGGISVAIFCDSRYSIQSITQWAVSWKKNGWKKSGGEIKNLDLIQLMFECYQTIKDML 205
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+Y + GH G + NE DR++ A
Sbjct: 206 QIYHVNGHVGIEGNELADRMSILAVDE 232
>gi|171677308|ref|XP_001903605.1| hypothetical protein [Podospora anserina S mat+]
gi|170936722|emb|CAP61380.1| unnamed protein product [Podospora anserina S mat+]
Length = 311
Score = 83.4 bits (204), Expect = 9e-15, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 11 AYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKYP 66
YTDGA GN G G GV + TN R EL A ++AL +
Sbjct: 156 VYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQLVDLD 215
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-----VD 121
+ + TDS Y ++W W + GWKT+ VKN DL + +
Sbjct: 216 SPIEIRTDSQYSIDCVTKWYVSWVKKGWKTAGGTPVKNADLVKSIRDLMEDREAKGTITI 275
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
L + GH+G+ N++ DR+A A
Sbjct: 276 LTKVVGHSGDYGNDQADRLAVLGAQ 300
>gi|313838089|gb|EFS75803.1| ribonuclease HI [Propionibacterium acnes HL086PA1]
Length = 300
Score = 83.4 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPTGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYSINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|308493705|ref|XP_003109042.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
gi|308247599|gb|EFO91551.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
Length = 170
Score = 83.4 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLR----YKGKEKIISGGEKETTNNRMELMA 55
+++ ++ YTDG N GGW V+ + + G + +
Sbjct: 8 PRYVEDIRVYTDGCALRNGRSDAKGGWAVVFQNDRLFNATGFSEYGPQTNNRYELKAIEE 67
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
A+K + V + TDS Y + W W QNGW+TS+ V N +L
Sbjct: 68 ALKIVLRDGPAYNVTIVTDSHYAINSITMWRNNWIQNGWRTSNGTPVANKELIETIYSMI 127
Query: 116 AQHK-----VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ V ++ H+G+ N++ DR+A++AA
Sbjct: 128 GDMQQIGGSVRFEYVVAHSGDWLNDRADRMAKDAADQ 164
>gi|313793398|gb|EFS41456.1| ribonuclease HI [Propionibacterium acnes HL110PA1]
gi|314963401|gb|EFT07501.1| ribonuclease HI [Propionibacterium acnes HL082PA1]
gi|315077251|gb|EFT49313.1| ribonuclease HI [Propionibacterium acnes HL053PA2]
gi|327451675|gb|EGE98329.1| ribonuclease HI [Propionibacterium acnes HL092PA1]
Length = 300
Score = 83.4 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPTGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|152061131|dbj|BAF73617.1| ribonuclease H [Shewanella sp. SIB1]
Length = 262
Score = 83.4 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
+V YTDG C NPG G G+ + K + + G A I A
Sbjct: 93 DVVIYTDGGCEPNPGKAGSGMAIYRKSELAELWFGLFNPNGTNNTAELNALHQALIVAKK 152
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK-NIDLWMKFVEASAQHKV 120
L V + +DS Y K +W W+ W + I + + + +
Sbjct: 153 VLDAGETVQIMSDSQYSIKCVCEWAYGWKAKSWTRKTGEIANLEIIKQAHELYDAMKDDL 212
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
L + H G + NE DR++ +A
Sbjct: 213 VLQHVAAHIGIEGNELADRMSIHAID 238
>gi|313835959|gb|EFS73673.1| ribonuclease HI [Propionibacterium acnes HL037PA2]
gi|314927198|gb|EFS91029.1| ribonuclease HI [Propionibacterium acnes HL044PA1]
gi|314970729|gb|EFT14827.1| ribonuclease HI [Propionibacterium acnes HL037PA3]
Length = 300
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDLLRATRNADG 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E A V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIAGWKRKGWRKRDGKPVLNRDLLESIDEELAGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHTMNE 126
>gi|108762273|ref|YP_630486.1| ribonuclease H [Myxococcus xanthus DK 1622]
gi|108466153|gb|ABF91338.1| ribonuclease H [Myxococcus xanthus DK 1622]
Length = 255
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 11 AYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA-LKYPCK 68
+ DGACSGNPGPGGWG +++ G + G E ETTNNRMEL A KAL + P
Sbjct: 8 VFADGACSGNPGPGGWGSIIVTPDGLVTELGGHEPETTNNRMELTAVGKALRHLERAPGP 67
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--------- 119
+ ++TDS+YV +G ++W W + GWKT++ V N W + + AQ K
Sbjct: 68 IHIHTDSTYVIQGATKWAFGWSRRGWKTAEGGEVANAIYWKRLMALLAQRKESHAAEAAA 127
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
V ++I+GH G NE+VD IA
Sbjct: 128 VAWFYIRGHVGVPGNERVDAIAVA 151
>gi|226225874|ref|YP_002759980.1| ribonuclease HI [Gemmatimonas aurantiaca T-27]
gi|226089065|dbj|BAH37510.1| ribonuclease HI [Gemmatimonas aurantiaca T-27]
Length = 211
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 9 VHAYTDGACSGNPG----PGGWGVLLRYKGK-----EKIISGGEKETTNNRMELMAAIKA 59
V Y D +C GN PGG G L+ ++ + E TTNNRM L + I
Sbjct: 8 VAVYADESCLGNGKSGDTPGGLGALIEFRKNDGTVLRFDLWASEPNTTNNRMALRSVIDT 67
Query: 60 LTALKYPCK---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
A+ VL TDS Y+ G S W++ W + V+N++LW + V A A
Sbjct: 68 FEAMSRKGNRLSVLFTTDSRYIVDGMSSWVRGW-MSRGWRRKDGAVENVELWQQAVAAIA 126
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAA 145
H+ W+KGHAG+ +NE + +A AA
Sbjct: 127 THQTQWAWVKGHAGHPQNEYANYLATRAA 155
>gi|149910572|ref|ZP_01899211.1| ribonuclease HI [Moritella sp. PE36]
gi|149806415|gb|EDM66388.1| ribonuclease HI [Moritella sp. PE36]
Length = 264
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWG--VLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+ +++ Y DGACS NPG G G V + K + E TNN EL + A
Sbjct: 88 TPPQVADLNIYCDGACSPNPGKSGTGMAVYEKDKLAQLWYGLYEANGTNNSAELNGLLVA 147
Query: 60 LT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
++ V + +DS Y ++W K W+ GWK + +KN+ + +
Sbjct: 148 FRFAASHIEQGKTVQVLSDSRYSIDCITKWAKGWKNKGWKRGKNEEIKNLAIIQQCFSLY 207
Query: 116 AQHK--VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
Q K + + +KGHA + NE DR+A A + K+
Sbjct: 208 EQLKSNLIINHVKGHANIEGNELSDRMAVLARSQQEPKL 246
>gi|313801127|gb|EFS42393.1| ribonuclease HI [Propionibacterium acnes HL110PA2]
Length = 300
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PC 67
+ A DG+ NPGP GW + +GG TNN EL A + L A +
Sbjct: 2 IVAAADGSSLNNPGPTGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLGVLRATRDADE 58
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y ++WI W++ GW+ D K V N DL E V W+KG
Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRKGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118
Query: 128 HAGNQENE 135
HAG+ NE
Sbjct: 119 HAGHAMNE 126
>gi|254457277|ref|ZP_05070705.1| ribonuclease H [Campylobacterales bacterium GD 1]
gi|207086069|gb|EDZ63353.1| ribonuclease H [Campylobacterales bacterium GD 1]
Length = 272
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNR-----MELM 54
M + V Y DG C+ NPG G GV + R ++ G +E N
Sbjct: 96 MPTSESGNVTIYCDGGCTPNPGKAGSGVAVYRNDTLSELWYGLYEEMGTNNTAELGALYE 155
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVE 113
+ + A V + DS Y W W++ GW + I +
Sbjct: 156 SLLLAQKEAVNGNTVEIKCDSMYSINCIKTWAISWEKKGWTKKGGEIKNLEIIKLSYHLY 215
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRI 140
S ++ V L IK H+G + NE DR+
Sbjct: 216 NSIKNDVTLSHIKAHSGFEGNELADRM 242
>gi|86158499|ref|YP_465284.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|123723063|sp|Q2IJL8|RNH_ANADE RecName: Full=Ribonuclease H; Short=RNase H
gi|85775010|gb|ABC81847.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
Length = 183
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKET-------TNNRMELMAAIKALT 61
A++DG+ NPG PGG G ++ + + GG + TNNRMEL A ++AL
Sbjct: 7 IAFSDGSALVNPGGPGGTGYVVLDRARPAYRFGGTRWVEDGPNAVTNNRMELRAVLEALE 66
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L V + +DS YV S+WI W++ GW+T+ + V N DL + V
Sbjct: 67 GLPGGEAVQVISDSRYVVDALSRWIHGWRRKGWRTASGEPVLNRDLIEALDARARDLSVT 126
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W++GH G+ NE VD++A+ AA
Sbjct: 127 YTWVRGHDGHAVNEVVDQLAQAAAR 151
>gi|50290915|ref|XP_447890.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527201|emb|CAG60839.1| unnamed protein product [Candida glabrata]
Length = 403
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIIS----GGEKETTNNRMELM 54
D K +++V Y DG+ GN G+GV + I G + M +
Sbjct: 235 DHKPVQKVTTYCDGSSLGNGTHASKAGYGVYFPHNPSYNISKPLLIGPQTNNRAEIMAVS 294
Query: 55 AAIKALT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT--------- 101
A+ + + + TDS YV K + + + +T K
Sbjct: 295 EALDTIWNDLTCHGNKVEYTIKTDSEYVSKLLNDRYSSYTEKEMETLPNKDLVKPLIEKY 354
Query: 102 -VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + S + + W+KGHAG NE D +AR A
Sbjct: 355 VKVKTYYDVNKDKFSNDKGLKIEWVKGHAGEPGNEMADLLARRGADQ 401
>gi|328906097|gb|EGG25872.1| ribonuclease HI [Propionibacterium sp. P08]
Length = 298
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PCKVLLY 72
DG+ NPGP GW + +GG TNN EL A + L A + + +
Sbjct: 5 DGSSLDNPGPAGWAWYIDDD---TWAAGGWPRGTNNMGELKAVLDLLRATRNADGPLTIL 61
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
DS Y ++WI W++ GW+ D K V N DL E A V W+KGHAG+
Sbjct: 62 CDSQYAINCCTKWIAGWKRKGWRKRDGKPVLNRDLLESIDEELAGRDVTFEWVKGHAGHT 121
Query: 133 ENE 135
NE
Sbjct: 122 MNE 124
>gi|42523605|ref|NP_968985.1| hypothetical protein Bd2138 [Bdellovibrio bacteriovorus HD100]
gi|39575811|emb|CAE79978.1| rnhA [Bdellovibrio bacteriovorus HD100]
Length = 153
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALK 64
L YTDG+ G G W ++ + + SG + T+N+ME AAI+AL++L
Sbjct: 13 LPRFEVYTDGSVKN--GRGAWAYVVVRRNRVLREASGVQTRPTSNQMEFQAAIEALSSLP 70
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+++LYTDS + + Q + +W+ GW S + + ++ + + KV W
Sbjct: 71 EKSRIVLYTDSRVLIETL-QKVPEWKGLGWVKSRGQPIPQVNQLKQLDQLLTVRKVQWKW 129
Query: 125 IKGHAGNQENEKVDRIARNA 144
+K H+G + NE+ D + A
Sbjct: 130 VKAHSGIKHNERCDVLCVRA 149
>gi|220916983|ref|YP_002492287.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
gi|254808022|sp|B8J731|RNH_ANAD2 RecName: Full=Ribonuclease H; Short=RNase H
gi|219954837|gb|ACL65221.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 183
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKET-------TNNRMELMAAIKALT 61
A++DG+ NPG PGG G ++ + + GG + TNNRMEL A ++AL
Sbjct: 7 IAFSDGSALVNPGGPGGTGFVVLDRARPAYRFGGTRWVEDGPNAVTNNRMELRAVLEALE 66
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L +V + +DS YV S+WI W++ GW+T+ + V N DL ++ V
Sbjct: 67 GLPGGEQVEVISDSRYVVDALSRWIHGWRKKGWRTASGEPVLNRDLIEALDARASALTVR 126
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W++GH G+ NE VD++A+ AA
Sbjct: 127 YTWVRGHDGHAVNEVVDQLAQAAAR 151
>gi|197122207|ref|YP_002134158.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|238689906|sp|B4UMK8|RNH_ANASK RecName: Full=Ribonuclease H; Short=RNase H
gi|196172056|gb|ACG73029.1| ribonuclease H [Anaeromyxobacter sp. K]
Length = 183
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKET-------TNNRMELMAAIKALT 61
A++DG+ NPG PGG G ++ + + GG + TNNRMEL A ++AL
Sbjct: 7 IAFSDGSALVNPGGPGGTGFVVLDRARPAYRFGGTRWVEDGPNAVTNNRMELRAVLEALE 66
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L +V + +DS YV S+WI W++ GW+T+ + V N DL ++ V
Sbjct: 67 GLPGGEQVEVISDSRYVVDALSRWIHGWRKKGWRTASGEPVLNRDLIEALDARASALSVR 126
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W++GH G+ NE VD++A+ AA
Sbjct: 127 YTWVRGHDGHAVNEVVDQLAQAAAR 151
>gi|255733062|ref|XP_002551454.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131195|gb|EER30756.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 11 AYTDGACSGNPG----PGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
Y DGA GN P G+GV K+ G + TN R EL A A
Sbjct: 115 VYVDGASRGNGKSANAPSGYGVYWGPNDPRNAAVPLDKVDRGTSFKPTNQRAELRAINHA 174
Query: 60 LTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW---- 108
L + K +++DS Y + +W KW NGWK S + V N +L
Sbjct: 175 LKDIHNDLKSGNASTKTEIHSDSRYAIRSVDEWSDKWAANGWKNSKGEPVANQELIKETV 234
Query: 109 ------MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K +A V+ +KGH+GN NE DR+A A ++
Sbjct: 235 ALKNSINKEYQARNWGDVEFVHVKGHSGNPGNEAADRLANQGADNY 280
>gi|218710132|ref|YP_002417753.1| ribonuclease HI [Vibrio splendidus LGP32]
gi|218323151|emb|CAV19328.1| Ribonuclease HI [Vibrio splendidus LGP32]
Length = 257
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ +TDGAC NPG G G + + ++ G + N + +K L
Sbjct: 88 DIKIFTDGACEPNPGEAGTGLAVYQNNQLTELWYGLYQPVGTNNTAELHGLKQAFVLAKE 147
Query: 67 C-----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKV 120
V +Y DS Y ++W W++ GW S + + + + K+
Sbjct: 148 KLNAGLSVAIYCDSKYSIDCITKWATGWEKKGWTKSGGEIKNLDIIKPAYALYQELASKI 207
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+Y + GH G + NE DR++ A S + ++
Sbjct: 208 TIYHVNGHVGIEGNELADRMSIVAISSKEQEL 239
>gi|170780585|ref|YP_001708917.1| ribonuclease H [Clavibacter michiganensis subsp. sepedonicus]
gi|169155153|emb|CAQ00253.1| ribonuclease H [Clavibacter michiganensis subsp. sepedonicus]
Length = 251
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + E +GG TNN+ EL A ++ A +
Sbjct: 2 TITAAADGSALGNPGPAGWAWYVDD---EHWAAGGWPHATNNQGELKAVLELFRATAHLD 58
Query: 68 KVLLYTD-SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
LL S YV ++W+ W++ GW+ D K V N++L + + W+K
Sbjct: 59 DDLLVLCDSQYVINSVTKWMPGWKRKGWRKGDGKPVLNVELLQEIDAEIQGRRYRFEWVK 118
Query: 127 GHAGNQENE 135
GHA + NE
Sbjct: 119 GHANHPLNE 127
>gi|292667904|gb|ACV72187.1| ribonuclease H [uncultured organism]
Length = 220
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 9 VHAYTDGACSGNPG----PGGWGVLLRYKGK-------EKIISGGEKETTNNRMELMAAI 57
V Y D +C GN PGG GVL+ Y + + E TTNNRM L + I
Sbjct: 17 VAVYADESCLGNGREGENPGGAGVLVEYARPGGAGDIVRRDVWVSEPATTNNRMALRSVI 76
Query: 58 KALT---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+A +V+ TDS Y+ G ++W+ W Q G ++N+ LW + V+A
Sbjct: 77 EAFRAIGHKGTRFRVVFTTDSRYIVDGMTRWVHDWAQRG-WKRKSGAIENLALWQEAVQA 135
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
H V+ W++GHAG+ +NE + +A AA
Sbjct: 136 VNGHAVEWRWVRGHAGHAQNEYANHLAVTAA 166
>gi|260438424|ref|ZP_05792240.1| ribonuclease HI [Butyrivibrio crossotus DSM 2876]
gi|292809010|gb|EFF68215.1| ribonuclease HI [Butyrivibrio crossotus DSM 2876]
Length = 162
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWG-VLLRYKG-----KEKIISGGEKETTNNRMELMAAIKA 59
+ V YTDGA GNP G V+L Y K +S G K+TTNNRMELMAAI
Sbjct: 1 MNNVIIYTDGAARGNPNGPGGYGVVLEYTDKNGIVHHKELSQGYKKTTNNRMELMAAIAG 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS-DKKTVKNIDLWMKFVEASAQH 118
L ALK PC V LY+DS Y+ F Q + VKN DLW + ++A H
Sbjct: 61 LEALKAPCNVTLYSDSKYLVDAFRQKWIDSWIAKDFKRGKNEPVKNPDLWKRLLKAKENH 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
V+ W+KGHAG+ NEK D +A +AA
Sbjct: 121 NVEFVWVKGHAGHAMNEKCDMLATSAAD 148
>gi|308162968|gb|EFO65334.1| Ribonuclease H [Giardia lamblia P15]
Length = 348
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 10 HAYTDGACSGN-PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
A+TDG S + GPGGWG LL + + + K TTNNRMEL + AL +
Sbjct: 193 VAFTDGGSSPSAGGPGGWGCLLFNATEMHVFARSYKSTTNNRMELRGILCALLNVPEGSV 252
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--------KFVEASAQHKV 120
+ +Y+DS Y WI +W++ G + + I A V
Sbjct: 253 LHIYSDSQYAINCCRVWITQWKKKGLLCPKNPSREAIINTTPLNKDLLLWIYTALQSRTV 312
Query: 121 DLYWIKGHAGNQENEKVDRI 140
+ +KGH+GN+ N+ VD +
Sbjct: 313 EFVHVKGHSGNELNDFVDSL 332
>gi|170727526|ref|YP_001761552.1| ribonuclease H [Shewanella woodyi ATCC 51908]
gi|169812873|gb|ACA87457.1| ribonuclease H [Shewanella woodyi ATCC 51908]
Length = 251
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V +TDG C NPG G GV + R ++ G N + A+ +
Sbjct: 82 VEIFTDGGCEPNPGKAGSGVAVYREGVLAELWYGLYNSFGTNNSAELNALHQALLMAKQA 141
Query: 68 -----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--KFVEASAQHKV 120
V + +DS Y + W W+Q GWK +KN+D+ + + ++
Sbjct: 142 LIENKTVHIRSDSQYSINCITNWAYGWKQKGWKRKVAGDIKNLDIIQAAHALYDEIKDQL 201
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + H G + NE DR++ A +K
Sbjct: 202 KISHVAAHIGIEGNELADRMSIYAIDQQDSK 232
>gi|302672344|ref|XP_003025864.1| hypothetical protein SCHCODRAFT_62826 [Schizophyllum commune H4-8]
gi|300099535|gb|EFI90961.1| hypothetical protein SCHCODRAFT_62826 [Schizophyllum commune H4-8]
Length = 168
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ DG+C GN G GV + + I + TNNR E +A I AL A
Sbjct: 33 VWIDGSCIGNGREDARAGAGVYFG-EHADNISARVPGAQTNNRGEHLAFILALLATAPTV 91
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +Y DS V + + W ++++Q GW ++ ++ ++ V+ W+KG
Sbjct: 92 PLTVYCDSELVIRTYCHWARRFEQCGWICANADLIQYAVTLLQRRSCP----VEFRWVKG 147
Query: 128 HAGNQENEKVDRIARNAA 145
H+GN+ N+ D +A++ A
Sbjct: 148 HSGNKGNDAADILAKDGA 165
>gi|255067225|ref|ZP_05319080.1| ribonuclease HI [Neisseria sicca ATCC 29256]
gi|255048593|gb|EET44057.1| ribonuclease HI [Neisseria sicca ATCC 29256]
Length = 120
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/110 (50%), Positives = 69/110 (62%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ V+ YTDGAC GNPG GGWGV +RY EK + GGE ETTNNRMEL A I+ L +LK
Sbjct: 3 KPVYLYTDGACKGNPGAGGWGVFMRYGAHEKELFGGEAETTNNRMELTAVIEGLKSLKRR 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
C+V++ TDS YV G WI W++NGWKT+ K +K +
Sbjct: 63 CQVIICTDSQYVKNGMESWIHGWKKNGWKTTAKNRLKTMIYGKNSTAWFN 112
>gi|163751361|ref|ZP_02158587.1| hypothetical ribonuclease HI [Shewanella benthica KT99]
gi|161328770|gb|EDP99917.1| hypothetical ribonuclease HI [Shewanella benthica KT99]
Length = 255
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKA-----LT 61
+V YTDG C NPG G GV + + G N + A+
Sbjct: 85 DVVIYTDGGCEPNPGKAGSGVAVYKDNELSELWYGLYNSHGTNNSAELNALHQALLIAQE 144
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA--QHK 119
L + +DS Y + W W+ GWK +KN+D+ + K
Sbjct: 145 NLAAGKSAHIRSDSQYSINCITNWAYGWKTKGWKRKTAGDIKNLDIIQASHALYDELKEK 204
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + H G + NE DR++ A
Sbjct: 205 LVISHVAAHIGIEGNELADRMSIYAIDK 232
>gi|50543288|ref|XP_499810.1| YALI0A06523p [Yarrowia lipolytica]
gi|49645675|emb|CAG83736.1| YALI0A06523p [Yarrowia lipolytica]
Length = 369
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTAL-- 63
+TDGACS N G+G+ L KE + TN R EL A + A
Sbjct: 208 QIFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICAS 267
Query: 64 --KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV--EASAQHK 119
+YTDSSY ++W W++NGW+ + V N D+ + + +A + +
Sbjct: 268 KLSDGRLYEIYTDSSYAIDCLTKWHIAWERNGWRNRGGEPVANQDVIKRILTLKAESTNC 327
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L ++ H ++ N++ DR+AR +
Sbjct: 328 IGLKKVEAHGSSEGNKQADRLARQGVTA 355
>gi|302392002|ref|YP_003827822.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
gi|302204079|gb|ADL12757.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
Length = 261
Score = 80.7 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+ G + V+++ + E +N +EL+AAIK + L+ +
Sbjct: 121 KVYTDGSFLEELDNGAYAVIIKDEAGEYEYYTERVDVKNSNLIELLAAIKGVELLENRER 180
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS YV KG ++WI W+ N W+T + + VK+ID W KF E + ++L W+K H
Sbjct: 181 IRIVTDSQYVRKGLAEWIINWRLNDWQTVNGEQVKHIDYWKKFDELTKGKYIELEWVKAH 240
Query: 129 AGNQENEKVDRIARNAAVS 147
A + ENE D +AR A +
Sbjct: 241 ADHFENELCDIMARETAEN 259
>gi|291279864|ref|YP_003496699.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
gi|290754566|dbj|BAI80943.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
Length = 141
Score = 80.7 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIK 58
M+ +++ +TDGACSGNPGP G G ++ + K S E TNN E A IK
Sbjct: 1 MNK---KKIKIFTDGACSGNPGPAGIGFVIYDEDDNVIKECSEYLGEATNNIAEYTALIK 57
Query: 59 --ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K K+++Y+DS + K K +N K DK
Sbjct: 58 ALESIKDKKHYKLIIYSDSELLVKQIKGVYKVKNKNLKKLYDKVLELIQG---------- 107
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
VD I H ++N D++A+ A
Sbjct: 108 ---VDFELI--HIPREDNSYADKLAKKAIE 132
>gi|330897777|gb|EGH29196.1| ribonuclease H [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 104
Score = 80.7 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/99 (43%), Positives = 61/99 (61%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
MEL AI+ L LK PC+V L TDS YV KG ++W+ W++ GWKT+ K+ VKN DLW
Sbjct: 1 MELTGAIRGLEELKRPCEVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQL 60
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
E ++H V W++GH G+ NE+ D++A +
Sbjct: 61 LDEQVSRHTVKWQWVRGHIGHPGNERADQLANRGVDEVR 99
>gi|320582980|gb|EFW97197.1| Ribonuclease H1 [Pichia angusta DL-1]
Length = 176
Score = 80.7 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 10 HAYTDGACSGNPGP----GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA------ 59
YTDGACS N P G+GV + N ++AIK
Sbjct: 15 TIYTDGACSFNHDPSRAKAGYGVFFGDGDPRNTAAPLAGPVQTNNRAELSAIKQALETIL 74
Query: 60 -LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID----------LW 108
+ + TDS Y K W K WQ+NGWK S K+ V N D
Sbjct: 75 EEFEFGNGEQYQILTDSEYCVKCILVWSKTWQKNGWKNSKKQPVANRDLIEAILGLIDRI 134
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ ++ + W++GHA N NE D +AR A
Sbjct: 135 NEEYARHGFGRLTVDWVRGHANNHGNEMADALAREGAT 172
>gi|260774801|ref|ZP_05883703.1| ribonuclease HI [Vibrio coralliilyticus ATCC BAA-450]
gi|260609226|gb|EEX35381.1| ribonuclease HI [Vibrio coralliilyticus ATCC BAA-450]
Length = 145
Score = 80.7 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESFTINRKTDSAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ ++Y+DS Y KGF+ W+ W+ GW+ SDKK VKN LW + E S++ V+++ +K
Sbjct: 65 DEDVIYSDSDYCVKGFNIWMDDWKDRGWRRSDKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAV 146
H+G + NE+ D +A AA
Sbjct: 125 AHSGIEGNERADLLAVEAAT 144
>gi|148272053|ref|YP_001221614.1| ribonuclease H [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147829983|emb|CAN00911.1| Ribonuclease H [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 252
Score = 80.7 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + E +GG TNN+ EL A ++ A +
Sbjct: 2 TITAAADGSALGNPGPAGWAWYVDD---EHWAAGGWAHATNNQGELKAVLELFRATAHLD 58
Query: 68 KVLLYTD-SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
LL S YV ++W+ W++ GW+ D K V N++L + + W+K
Sbjct: 59 DDLLVLCDSQYVINSVTKWMPGWKRKGWRKGDGKPVLNVELLKEIDAEIQGRRYRFEWVK 118
Query: 127 GHAGNQENE 135
GHA + NE
Sbjct: 119 GHANHPLNE 127
>gi|326793197|ref|YP_004311018.1| ribonuclease H [Clostridium lentocellum DSM 5427]
gi|326543961|gb|ADZ85820.1| Ribonuclease H [Clostridium lentocellum DSM 5427]
Length = 154
Score = 80.7 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 7 REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
E+ YTDG GN W L Y K G TNN+ME+ A I+AL A+
Sbjct: 3 NEIMVYTDGGARGNGKEDCVSAWAYTLSYGEHYKENKGAMYGATNNQMEMTAIIEALKAI 62
Query: 64 KYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVD 121
K + L++DS+Y G + WI W++ GW S K+ V+N +LW++ + ++
Sbjct: 63 KNKTIPIKLHSDSAYCITGITSWIHNWKKKGWINSKKEPVENKELWIEMDKLVRECTSIE 122
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+KGHA Q N +VD + A +
Sbjct: 123 FVKVKGHADVQGNIRVDALVNLAMDELIAE 152
>gi|268533056|ref|XP_002631656.1| C. briggsae CBR-RNH-1.3 protein [Caenorhabditis briggsae]
Length = 161
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 13 TDGACSGNP---GPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTA--LKYP 66
TDGA S N GGWGV++ ++ S TNNR EL A +A
Sbjct: 16 TDGATSNNGQAGARGGWGVVVESDRNLDRSGSSAYGNQTNNRYELEAIREATRIASQVPD 75
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + TDS Y + W W+QNGW+TS + VKN +L + I
Sbjct: 76 RHISINTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSGKHIS 135
Query: 127 GHAGNQENEKVDRIARNAAVS 147
GH+ + N + DR+AR AA S
Sbjct: 136 GHSNDYHNTEADRLARQAAAS 156
>gi|209489243|gb|ACI49025.1| hypothetical protein Cbre_JD04.010 [Caenorhabditis brenneri]
Length = 247
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 2 DSKHLREVHAYTDGACSGNPGPG---GWGVLLRYK-GKEKIISGGEKETTNNRMELMAA- 56
+ +H YTDG N PG GW ++ ++ + TNNR EL A
Sbjct: 6 RRRRAEPLHIYTDGCALRNGQPGAKGGWAIVYELGDFQDAYGYCMDGPQTNNRFELEAIG 65
Query: 57 --IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
++ + ++TDS Y WIKKW+QNGW+ S K V N L
Sbjct: 66 QALERSLESGGEYDITIFTDSKYAINSIKHWIKKWKQNGWRNSQGKRVHNDLLIQDIDSM 125
Query: 115 SAQHK-----VDLYWIKGHAGNQENEKVDRIARNAA 145
V+ +++ H+GN NEK DR+A+ AA
Sbjct: 126 LEDINYAGGSVEFEYVEAHSGNWFNEKADRLAKKAA 161
Score = 40.6 bits (93), Expect = 0.063, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 4 KHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+H YTDG N P GGW ++ + + + N + AIK
Sbjct: 180 SRPEPLHIYTDGCALRNGQPGAKGGWAIVYEFGNYKNDKGHSDIGYQTNNRYELEAIKQ 238
>gi|71024413|ref|XP_762436.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
gi|46097685|gb|EAK82918.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
Length = 1122
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYK--GKEKIISGGEKE-TTNNRMELMAAIKALTAL 63
Y DG+ GN GWGV + TNNR ELMA I+A+
Sbjct: 883 TVYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPGDKQTNNRAELMALIRAVQLC 942
Query: 64 KYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA--SAQHKV 120
++L+ TDS Y + ++W+ KW+QNG+KT V+N DL ++ + +
Sbjct: 943 PNDGRQLLIMTDSKYSMQTVTEWLPKWRQNGFKTLAGADVQNQDLIVELDKQLSGRHPRP 1002
Query: 121 DLYWIKGHAGNQENEKVDRIARNAA 145
L +K H G NE VDR+A+ A
Sbjct: 1003 KLEHVKAHVGIHGNEIVDRMAKYGA 1027
>gi|2911504|gb|AAC04366.1| ribonuclease H1 [Schizosaccharomyces pombe]
Length = 264
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 10 HAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKY 65
Y +G+ N G G GV I E TNNR EL A I AL
Sbjct: 125 VVYAEGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTS- 183
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + +DS+Y K + W+ KW++N +KTS+ + VKN+DL + + + V L ++
Sbjct: 184 -GDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSDRNVSLEYV 242
Query: 126 KGHAGNQENEKVDRIARNAA 145
KGH+ + N++ D +AR A
Sbjct: 243 KGHSTDYGNQQADMLARRGA 262
>gi|91792120|ref|YP_561771.1| ribonuclease H [Shewanella denitrificans OS217]
gi|91714122|gb|ABE54048.1| ribonuclease H [Shewanella denitrificans OS217]
Length = 263
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
++ YTDG C NPG G G+ L +KG+ + G A + A T
Sbjct: 94 DIVIYTDGGCEPNPGEAGSGLALYHKGQLTELWYGLYHPKGTNNTAELNALYQALLIAKT 153
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
L KV +++DS Y K S+W W+ GW + + + +
Sbjct: 154 KLDAGHKVQIFSDSQYSIKCISEWAYGWKAKGWSRKGGEIANLDIIKLAHGVFDELKDTL 213
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
L + H G + NE DR++ A
Sbjct: 214 KLEHVAAHVGIEGNELADRMSILAITE 240
>gi|332799079|ref|YP_004460578.1| ribonuclease H [Tepidanaerobacter sp. Re1]
gi|332696814|gb|AEE91271.1| ribonuclease H [Tepidanaerobacter sp. Re1]
Length = 141
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 18/150 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTA- 62
+ +V AYTDGA GNPG G GVLL + K IS ETTNN E A I AL
Sbjct: 1 MSKVIAYTDGASRGNPGNAGIGVLLLDEDHNVIKEISEYIGETTNNIAEYTAMITALKEA 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ + +DS + K ++ + ++ K +E + V
Sbjct: 61 LEMDFDEIEVISDSELMVKQINKEYQV--------KNEGLKPLYKEICKLLEEFKSYTVR 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
H + N++ D +A ++
Sbjct: 113 ------HVRRENNKRADELANRGIDEALDE 136
>gi|332967953|gb|EGK07040.1| ribonuclease HI [Desmospora sp. 8437]
Length = 134
Score = 80.3 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 25 GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGF-S 83
G G +L + + K I+GG ++TTNNRMEL AA++AL LK PC+V L+TDS+Y+ F
Sbjct: 10 GVGAVLIHGDRRKEITGGSRQTTNNRMELTAALEALRNLKQPCRVKLHTDSAYLANCFKQ 69
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+W W++ GW S + V+N DLW + + +H+V+ +KGH+ + N + D +AR
Sbjct: 70 KWYVNWERRGWVNSRNEPVENKDLWQELLREVRKHEVEFVKVKGHSDVELNNRCDELARE 129
Query: 144 AA 145
A
Sbjct: 130 AI 131
>gi|114775349|ref|ZP_01450917.1| hypothetical ribonuclease HI [Mariprofundus ferrooxydans PV-1]
gi|114553460|gb|EAU55841.1| hypothetical ribonuclease HI [Mariprofundus ferrooxydans PV-1]
Length = 253
Score = 79.9 bits (195), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 6 LR-EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIK 58
++ + +TDG C NPG G GV + + + G A I
Sbjct: 81 MKIDTKIFTDGGCEPNPGKAGSGVAIYRNNQVDELWYGLFNPMGTNNTAELNALHQALIM 140
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQ 117
A + V+++ DS Y + +QW WQ+ GWK + + + F + S +
Sbjct: 141 AGDEIGSNRSVVIFCDSKYAIQCITQWAVNWQKKGWKKAGGEIRNLELIKQMFTLYQSLK 200
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
K+ + + GH G + NE DR++ A S
Sbjct: 201 EKLKILHVNGHVGVEGNELADRMSILAIES 230
>gi|268608636|ref|ZP_06142363.1| ribonuclease h [Ruminococcus flavefaciens FD-1]
Length = 127
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 33 KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKK-WQQ 91
K EK +SGG+ TTNNRMEL+ I L+ALK PCKV L TDS YV ++ W++
Sbjct: 9 KVYEKELSGGDSATTNNRMELLGVITGLSALKEPCKVTLTTDSKYVVDSVTKGWVYGWKK 68
Query: 92 NGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
GW SDKK N+DLW + +H V W+KGHAG+ ENE+ DR+A +
Sbjct: 69 KGWIKSDKKPALNVDLWEMLLPLLEKHDVTFNWVKGHAGHPENERCDRLAVEQRDKY 125
>gi|302389500|ref|YP_003825321.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
gi|302200128|gb|ADL07698.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
Length = 142
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA- 62
+R + YTDGA GNPG G G+++ K IS +TTNN E A + AL
Sbjct: 1 MRRLTVYTDGASRGNPGDAGIGIVILDENGNTLKEISDYIGQTTNNIAEYTALVTALKEA 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ +++DS + K + + ++ + M+ ++ + +
Sbjct: 61 LEMGCEEIGIFSDSELMVKQINGEYQI--------KNEGIKRLYAQAMELLKEFKRFSI- 111
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
H ++N++ D +A
Sbjct: 112 -----SHIRREQNKRADELANEGID 131
>gi|315927615|gb|EFV06946.1| Ribonuclease H [Campylobacter jejuni subsp. jejuni DFVF1099]
Length = 94
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ + YTDG+C NPG GGW +LRYK +K G E TTNNRMELMA I++L ALK
Sbjct: 1 MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNNRMELMAIIESLKALKE 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD 98
PC++ L+TDS+ + + ++W++ W + +K
Sbjct: 61 PCEISLFTDSNLMVQSINEWLEGWIKKDFKGKK 93
>gi|308178404|ref|YP_003917810.1| ribonuclease H [Arthrobacter arilaitensis Re117]
gi|307745867|emb|CBT76839.1| putative ribonuclease H [Arthrobacter arilaitensis Re117]
Length = 303
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALKY 65
+ A DG+ GNPGP GW + ++ +GG TNN EL A ++
Sbjct: 2 TIIAAADGSALGNPGPAGWAWYV---DQDNWAAGGWDHGTNNMGELQAVLELFRATEHLP 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + DS Y S+W+ W++ GWK +D K V N D+ + +A A K W+
Sbjct: 59 EEELRILCDSQYAINCISKWMPGWKKKGWKKADGKPVLNQDILKELDQAIAGRKYTFEWV 118
Query: 126 KGHAGNQENE 135
KGHAG+ NE
Sbjct: 119 KGHAGHDLNE 128
>gi|253744142|gb|EET00389.1| Ribonuclease H [Giardia intestinalis ATCC 50581]
Length = 350
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 10 HAYTDGACSGN-PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
A+TDG + + GPGGWG +L + + + K TTNNRMEL + AL +
Sbjct: 195 VAFTDGGSTPSAGGPGGWGCVLFSATEMHVYARSYKATTNNRMELRGILCALLNVPEGST 254
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--------KFVEASAQHKV 120
+ +Y+DS Y + W+ +W++ G T + I A V
Sbjct: 255 LHIYSDSQYAINCCNTWLDQWRKKGLLCPKNPTREAIKCATPLNKDLLLWIYAAMQSRTV 314
Query: 121 DLYWIKGHAGNQENEKVDRI 140
++GH+GN+ N+ VD +
Sbjct: 315 RFIHVRGHSGNRLNDFVDNL 334
>gi|328471733|gb|EGF42610.1| ribonuclease H [Vibrio parahaemolyticus 10329]
Length = 146
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESFTINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA +
Sbjct: 125 AHSGIEGNERADLLAVEAAEA 145
>gi|153833536|ref|ZP_01986203.1| RNase H [Vibrio harveyi HY01]
gi|148870187|gb|EDL69128.1| RNase H [Vibrio harveyi HY01]
Length = 145
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESFTINRKTDSAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ ++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DEDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA
Sbjct: 125 AHSGIEGNERADLLAVEAATE 145
>gi|150017345|ref|YP_001309599.1| ribonuclease H [Clostridium beijerinckii NCIMB 8052]
gi|149903810|gb|ABR34643.1| ribonuclease H [Clostridium beijerinckii NCIMB 8052]
Length = 265
Score = 79.5 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTD + GG+ ++ KG + + K+ +++ EL AA+KAL LK K
Sbjct: 122 KIYTDASYLEKKNHGGFAFIIEDLKGNYNLYTEKVKDIGSSQAELEAAMKALELLKDVEK 181
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS YV KG ++W+ W+ N +KT + + KNI+ W+ F +A ++ W+K H
Sbjct: 182 IRIITDSQYVRKGLTEWLPIWKLNDFKTINGEPAKNIEKWLDFDKACNGKYIEFQWVKAH 241
Query: 129 AGNQENEKVDRIARNAAVS 147
+ + EN D A++ A
Sbjct: 242 SNHFENSLCDMYAKDIANK 260
>gi|50557008|ref|XP_505912.1| YALI0F26543p [Yarrowia lipolytica]
gi|49651782|emb|CAG78724.1| YALI0F26543p [Yarrowia lipolytica]
Length = 281
Score = 79.5 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI----KALTAL 63
AYTDGAC N G GG GV + N+ ++AI + +
Sbjct: 129 AYTDGACENNGGHRPKGGIGVYFGELHPCNYSGPLVGDVQTNQRAELSAILKALEIIDNR 188
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----- 118
+ +DS Y SQW++ W++NG+KT K V+N DL + E +
Sbjct: 189 GENLNWQIRSDSQYAVNCCSQWLEGWKKNGFKTGKGKEVENQDLILAIDEYLQKPRTRIG 248
Query: 119 -KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ I GHAG ENE+VD +A+
Sbjct: 249 TRITFKHIPGHAG--ENEEVDALAKQGITE 276
>gi|52549819|gb|AAU83668.1| conserved hypothetical protein [uncultured archaeon GZfos32E7]
Length = 173
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKAL 60
K ++++ YTDGAC GNPGP G G+++ K K + TNN E A IKAL
Sbjct: 12 RKMMKKLIIYTDGACRGNPGPAGIGIVICNESGKKIKEDKEFIGDATNNIAEYRALIKAL 71
Query: 61 TALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+V ++DS + + + + + L F++ +
Sbjct: 72 ELASDFSVTRVECFSDSELMVRQLNGAYRVK--------------DEKLGELFLQVKEKE 117
Query: 119 KVDLYWIKGHAGNQEN--EKVDRIARNAAVSFKNK 151
++ H + N ++ D +A + K
Sbjct: 118 RLFEEVTYSHVPRKNNLIKRADSLANLGIDDKEPK 152
>gi|237786458|ref|YP_002907163.1| glutamate-1-semialdehyde aminotransferase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759370|gb|ACR18620.1| Glutamate-1-semialdehyde aminotransferase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 620
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ A DG+ GNPGP GW + +GG TNN+ EL A + L + C
Sbjct: 9 TITAAVDGSAIGNPGPSGWAWYIDDAH---WAAGGWSRGTNNKGELEAVRQLLRVTEQVC 65
Query: 68 K-------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK- 119
+ ++ DS YV ++W+ W++ GWK S+ K V N++ + E + +
Sbjct: 66 DSNGRLEDLEVFCDSQYVINSVTKWVHGWKKKGWKKSNGKPVLNVEQIKEIDELLTRRRK 125
Query: 120 ----VDLYWIKGHAGNQENE 135
V W+KGHAG++ NE
Sbjct: 126 SGAAVTFRWVKGHAGHELNE 145
>gi|15640525|ref|NP_230152.1| ribonuclease H [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|153822190|ref|ZP_01974857.1| ribonuclease HI, putative [Vibrio cholerae B33]
gi|229509030|ref|ZP_04398518.1| ribonuclease HI [Vibrio cholerae B33]
gi|229519698|ref|ZP_04409141.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229606210|ref|YP_002876858.1| ribonuclease H [Vibrio cholerae MJ-1236]
gi|254850732|ref|ZP_05240082.1| ribonuclease H [Vibrio cholerae MO10]
gi|262151194|ref|ZP_06028332.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
gi|9654927|gb|AAF93671.1| ribonuclease HI, putative [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|126520325|gb|EAZ77548.1| ribonuclease HI, putative [Vibrio cholerae B33]
gi|220897829|dbj|BAH11091.1| ribonuclease H [Vibrio cholerae O1 biovar El tor]
gi|229344387|gb|EEO09362.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229353955|gb|EEO18889.1| ribonuclease HI [Vibrio cholerae B33]
gi|229368865|gb|ACQ59288.1| ribonuclease HI [Vibrio cholerae MJ-1236]
gi|254846437|gb|EET24851.1| ribonuclease H [Vibrio cholerae MO10]
gi|262031025|gb|EEY49651.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
Length = 146
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQYGCTRGGIGLVVMDEDNEIVHEESITINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA +
Sbjct: 125 AHSGIEGNERADLLAVEAAEA 145
>gi|86608814|ref|YP_477576.1| ribonuclease H [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557356|gb|ABD02313.1| ribonuclease H [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 169
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 11 AYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY---P 66
+TDG CS NPGPGGW V+++ + GG+ ++T+NRMEL I+AL ++
Sbjct: 20 IFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGN 79
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+Y+DS + ++ W+++W GW+ + + +V + WI
Sbjct: 80 GVDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLVEELYQLKQECPQVRVVWIP 139
Query: 127 GHAGNQENEKVDRIARNA 144
H G + NE VD + A
Sbjct: 140 AHQGLRWNEYVDGLVAQA 157
>gi|68473370|ref|XP_719243.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
gi|46441053|gb|EAL00353.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
Length = 232
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK------ETTNNRMELM------- 54
Y DGAC N GG+GV + + ++ TN R EL
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ L K ++Y+DS Y ++W +KW NGW+ S ++
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + +KGH+G + NE+ DR+A A +
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLANLAVDEY 220
>gi|302391482|ref|YP_003827302.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
gi|302203559|gb|ADL12237.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
Length = 201
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIK--ALTAL 63
E++ YTDGA GNPGPGG GVL++ ++ E TNN E A I
Sbjct: 2 ELNIYTDGASRGNPGPGGIGVLIKDGSNNIKEELADYIGEATNNEAEYQAIIAGLKKARE 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L++DS V K + + + K + +
Sbjct: 62 LNSESISLFSDSQLVIKQLTGEYRVRSE------KLKPYYLEIKELLQDLPDCDFQ---- 111
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFK 149
H +EN K D +A F+
Sbjct: 112 ----HIPREENHKADELANLGIDQFQ 133
>gi|261210073|ref|ZP_05924371.1| ribonuclease HI [Vibrio sp. RC341]
gi|260840838|gb|EEX67380.1| ribonuclease HI [Vibrio sp. RC341]
Length = 146
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESFTINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKGRGWRRADKKPVKNRKLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA +
Sbjct: 125 AHSGIEGNERADLLAVEAAEA 145
>gi|90019715|ref|YP_525542.1| putative ribonuclease HI [Saccharophagus degradans 2-40]
gi|89949315|gb|ABD79330.1| ribonuclease H [Saccharophagus degradans 2-40]
Length = 252
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 10 HAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP-- 66
+TDG C NPG G G + R ++ G N + A+ L
Sbjct: 85 KIFTDGGCEPNPGNAGSGIAVYRDGKISELWYGLYNPNGTNNTAELNALHQAMMLAEQEL 144
Query: 67 ---CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDL 122
++ DS Y + +QW WQ+ GWK + + + F + + + KV +
Sbjct: 145 AAGNSTAIFCDSKYSIQCITQWAAGWQKKGWKKAGGEIKNLELIQTMFALYQTLKGKVQI 204
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ GH G + NE DR++ A S + +
Sbjct: 205 LHVNGHVGVEGNELADRMSILAIESQETE 233
>gi|291287654|ref|YP_003504470.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
gi|290884814|gb|ADD68514.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
Length = 133
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 18/146 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ ++ ++DGAC GNPGP G G ++ G+E T N + A+
Sbjct: 1 MPDIKIFSDGACRGNPGPAGCGYIIYADGQEIASGTKFIGTATNNLAEYNALLVAAKDPI 60
Query: 65 --YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K+ Y DS V K K I + ++ + +V
Sbjct: 61 LNQFDKLNFYLDSELVVKQMKGEY-----------KLKNEGLIPVKLQIDKVLNGKQVTF 109
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
+ +N++ D++A A
Sbjct: 110 NHVP----RAQNKEADKLANMAIDEH 131
>gi|169625445|ref|XP_001806126.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
gi|111055454|gb|EAT76574.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
Length = 319
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIKALTALK 64
+ TDG+ N P G GV K G + TN R ELMA AL
Sbjct: 20 LVINTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALEKAP 79
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----- 119
VL+ +DS Y + W+ W+Q WK + +N +L V+ +
Sbjct: 80 IDQVVLISSDSRYAINCLTDWLPLWKQRSWKKVEGIFKENTELIQSIVKRMETRQKFNAL 139
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+W+KGH+G+ NE D++A
Sbjct: 140 TYFWWVKGHSGDPGNEFADKLAVKG 164
>gi|291546440|emb|CBL19548.1| Ribonuclease HI [Ruminococcus sp. SR1/5]
Length = 144
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 6 LREVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ ++ YTDG+ N PG GW L YKG+ ++ SGG TNNRME+ A ++A+ +
Sbjct: 1 MDKITVYTDGSALSNGRPGSGCGWACKLMYKGQARMKSGGAIGETNNRMEMQAVLEAMKS 60
Query: 63 LKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ V +Y+DS+YV + + + E +
Sbjct: 61 ITDKTIPVEVYSDSNYVVETMNGHFAMKKNRDLWRK------------LMRERQKFTSIR 108
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
W+KGH NQ N VDR A +
Sbjct: 109 FIWVKGHDKNQHNNDVDRQAVAESRKI 135
>gi|260767599|ref|ZP_05876535.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|262191328|ref|ZP_06049520.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
gi|260617499|gb|EEX42682.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|262032783|gb|EEY51329.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
Length = 148
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-P 66
Y DGA N GG G+++ + E + + + + L+Y
Sbjct: 5 IYVDGAAPNNQHVCMRGGIGLVVMDEDNEIVHEESITIDRETDCAELELLAFIEGLEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+D+ Y KGF+ W+ W+ GW+ ++KK VK+ LW + E ++ V++ +K
Sbjct: 65 DGDVIYSDNDYCVKGFNIWLDDWKDRGWRKANKKPVKHRQLWKQVDELRSRKYVEVLKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE D +A +AA S
Sbjct: 125 AHSGVRGNEIADSLAVDAARS 145
>gi|254389537|ref|ZP_05004763.1| ribonuclease H [Streptomyces clavuligerus ATCC 27064]
gi|326445844|ref|ZP_08220578.1| ribonuclease H [Streptomyces clavuligerus ATCC 27064]
gi|197703250|gb|EDY49062.1| ribonuclease H [Streptomyces clavuligerus ATCC 27064]
Length = 240
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIK 58
M + A DG+ GNPG GW ++ + ++ SG +NN EL A ++
Sbjct: 1 MIGVMNDRIVAAADGSSKGNPGRAGWAWVVADAHGVPQRWESGPLGTASNNVAELTALLR 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + + + DS Y K +QW+ W++NGW+T+ V N DL + A
Sbjct: 61 LLESTPPATPLEVRMDSQYAMKAVTQWLPGWKRNGWRTASGGPVANRDLVERIDALLAGR 120
Query: 119 KVDLYWIKGH 128
V L + H
Sbjct: 121 DVTLVHVPAH 130
>gi|298242102|ref|ZP_06965909.1| ribonuclease H [Ktedonobacter racemifer DSM 44963]
gi|297555156|gb|EFH89020.1| ribonuclease H [Ktedonobacter racemifer DSM 44963]
Length = 241
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 26/156 (16%)
Query: 1 MDSKHLREVHAYTDGACSGNPG-PGGWGVLLRYKGKEK-----------IISGGEKE--- 45
M R + A+TDGAC NPG P GW LL G +
Sbjct: 1 MPKLDARGIVAFTDGACIKNPGGPAGWSALLWAAVDSNNGIMAEKAACLECYGHIPKAPT 60
Query: 46 TTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
TTNNR E+ A + L+ + +Y+DS Y K Q ++ +
Sbjct: 61 TTNNRAEISAVLAVLSIAPPTLPLKIYSDSEYTIKVA-------QGVFQMKANPDLWQIY 113
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + W++GHAG+ +NE+ D +A
Sbjct: 114 RQLLSYRKQPP----TFEWVRGHAGHAQNERADELA 145
>gi|149236507|ref|XP_001524131.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452507|gb|EDK46763.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 321
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 28/178 (15%)
Query: 3 SKHLREVHAYTDGACSGNPG----PGGWGVLLRYKGKEK-------IISGGEKETTNNRM 51
S + YTDGA GN G+GV + TN R
Sbjct: 142 SSTPKVTKIYTDGASRGNGKSRTAASGYGVYYGRNDPRNAAVPLSSVDDIHTVAPTNQRA 201
Query: 52 ELMAAIKALTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV-- 102
EL A AL +K + +++DS Y + +W KW +NGW + K V
Sbjct: 202 ELHAIHHALKNIKNELATAPTGKQYSIHSDSKYAMQCVDEWSNKWLKNGWTNTAGKPVAN 261
Query: 103 --------KNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ + + + + +KGHAG++ NE DR+A A +KI
Sbjct: 262 ADIIKEAVQLKNEINEIHQQRGHQPLQFVHVKGHAGDERNEAADRLANIGADQMVSKI 319
>gi|315178522|gb|ADT85436.1| ribonuclease H [Vibrio furnissii NCTC 11218]
Length = 146
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCMRGGIGLVVMDEDNEIVHEESFTINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA +
Sbjct: 125 AHSGIEGNERADLLAVEAAEA 145
>gi|68473603|ref|XP_719126.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
gi|46440930|gb|EAL00231.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
Length = 232
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK------ETTNNRMELM------- 54
Y DGAC N GG+GV + + ++ TN R EL
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ L K ++Y+DS Y ++W +KW NGW+ S ++
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + +KGH+G + NE+ DR+A A +
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGMEGNEEADRLANLAVDEY 220
>gi|332097575|gb|EGJ02554.1| RNase H family protein [Shigella dysenteriae 155-74]
Length = 106
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/94 (55%), Positives = 69/94 (73%)
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
MAAI AL ALK C+V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW +
Sbjct: 1 MAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 60
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
A QH++ W+KGHAG+ ENE+ D +AR AA++
Sbjct: 61 ALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 94
>gi|167624759|ref|YP_001675053.1| ribonuclease H [Shewanella halifaxensis HAW-EB4]
gi|167354781|gb|ABZ77394.1| ribonuclease H [Shewanella halifaxensis HAW-EB4]
Length = 254
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKALTALKYP 66
++ +TDG C NPG G G+ + +K + G N + A+ +
Sbjct: 84 DLSIFTDGGCEPNPGKAGSGIAVYHKAELTQLWYGLYNANGTNNSAELNALHQALLIADK 143
Query: 67 C-----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA--QHK 119
V + +DS Y + W W+ GWK +KN+D+ + E + K
Sbjct: 144 ALKQGLTVQILSDSQYSINCITNWAYGWKTKGWKRKTAGDIKNLDIIQQSHELYDGLKEK 203
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+++ + H G + NE DR++ A
Sbjct: 204 LNIQHVAAHVGIEGNELADRMSIYAIDQ 231
>gi|330933905|ref|XP_003304343.1| hypothetical protein PTT_16900 [Pyrenophora teres f. teres 0-1]
gi|311319112|gb|EFQ87575.1| hypothetical protein PTT_16900 [Pyrenophora teres f. teres 0-1]
Length = 383
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIKALTALK 64
+ YTDG+ N G GV G E TN R EL A + L+ +
Sbjct: 18 LVCYTDGSALKNKKGETAAGCGVYFGPDDPRNYGEPLGPGEQTNQRAELAALWQGLSCIT 77
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-----SAQHK 119
Y V+++TDS Y W W+ WK+ N+DL V+ K
Sbjct: 78 YNQDVIIWTDSQYAKNTVLVWYHDWKLQDWKSPKGIIRLNLDLIKPIVDILKTRTDHHAK 137
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W+KGHAGNQ NE D++A +
Sbjct: 138 TEICWVKGHAGNQGNEAADKLAGRGSEMA 166
>gi|297580634|ref|ZP_06942560.1| ribonuclease H [Vibrio cholerae RC385]
gi|297535050|gb|EFH73885.1| ribonuclease H [Vibrio cholerae RC385]
Length = 146
Score = 78.4 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESITINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NE+ D +A AA +
Sbjct: 125 AHSGIEGNERADLLAVEAAKA 145
>gi|159117139|ref|XP_001708790.1| Ribonuclease H [Giardia lamblia ATCC 50803]
gi|157436903|gb|EDO81116.1| Ribonuclease H [Giardia lamblia ATCC 50803]
Length = 352
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 10 HAYTDGACSGN-PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
A+TDG + + GPGGWG LL + + + K TTNNRMEL + AL +
Sbjct: 197 VAFTDGGSTPSAGGPGGWGCLLFNATEMHVFARSYKSTTNNRMELRGILCALLNVPQGSV 256
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--------KFVEASAQHKV 120
+ +Y+DS Y W+ +W++ G K+I V
Sbjct: 257 LHIYSDSQYAINCCRVWLTQWKKKGLLCPQNPNRKDIINAKPLNKDLLLWIYAEMQSRTV 316
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+KGH+GN N+ VD +
Sbjct: 317 KFVHVKGHSGNSLNDFVDGLCYLGRRK 343
>gi|68473460|ref|XP_719288.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
gi|46441100|gb|EAL00400.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
Length = 285
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 28/169 (16%)
Query: 11 AYTDGACSGNP----GPGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
Y DGA GN P G+GV ++ + TN R EL A
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNVAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 60 LTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--- 109
L + K +++DS Y + ++W W +NGWK S +TV N DL
Sbjct: 177 LKNIHNDLQSGKATGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQETV 236
Query: 110 -------KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
K + ++ +KGHAG+ NE DR+A A + K
Sbjct: 237 ALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGADQYGKK 285
>gi|238883043|gb|EEQ46681.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 277
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 66/169 (39%), Gaps = 28/169 (16%)
Query: 11 AYTDGACSGNP----GPGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
Y DGA GN P G+GV ++ + TN R EL A
Sbjct: 109 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 168
Query: 60 LTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--- 109
L + K +++DS Y + ++W W +NGWK S +TV N DL
Sbjct: 169 LKNIHNDLQSGKATGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQETV 228
Query: 110 -------KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
K + ++ +KGHAGN NE DR+A A + K
Sbjct: 229 ALKNSINKTYQDKNWGNLEFVHVKGHAGNPGNEAADRLANQGADQYGKK 277
>gi|268324318|emb|CBH37906.1| ribonuclease H [uncultured archaeon]
Length = 142
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTAL 63
++++ YTDGAC GNPGP G G+++ + E K TNN E A IKAL
Sbjct: 2 MKKLIIYTDGACRGNPGPAGIGIVICNESGEIIKEDKEFIGNATNNIAEYRALIKALELA 61
Query: 64 KYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+V ++DS + + + + + +V
Sbjct: 62 NDFSVTRVECFSDSELMVRQLNGAYRVK----------NEKLGELFLQVKEKERLFEEVT 111
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ G ++ D++A +
Sbjct: 112 YSHVPREKG--LIKRADKLANLGIDGLR 137
>gi|157962578|ref|YP_001502612.1| ribonuclease H [Shewanella pealeana ATCC 700345]
gi|157847578|gb|ABV88077.1| ribonuclease H [Shewanella pealeana ATCC 700345]
Length = 254
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKAL-----T 61
+V +TDG C NPG G GV + + G N + A+
Sbjct: 84 DVSIFTDGGCEPNPGKAGSGVAVYHNAVLSELYYGLYNANGTNNSAELNALHQALLIADK 143
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA--QHK 119
ALK V + +DS Y + W W+ GWK +KN+D+ + + K
Sbjct: 144 ALKQGQSVQILSDSQYSINCITNWAYGWKTKGWKRKVAGDIKNLDIIQQSHALYDSLKDK 203
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+++ + H G + NE DR++ A
Sbjct: 204 LNIQHVAAHVGIEGNELADRMSIYAIDQ 231
>gi|68473699|ref|XP_719174.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
gi|46440980|gb|EAL00281.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
Length = 285
Score = 78.0 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 28/169 (16%)
Query: 11 AYTDGACSGNP----GPGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
Y DGA GN P G+GV ++ + TN R EL A
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 60 LTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--- 109
L + K +++DS Y + ++W W +NGWK S +TV N DL
Sbjct: 177 LKNIHNDLQSGKATGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQETV 236
Query: 110 -------KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
K + ++ +KGHAG+ NE DR+A A + K
Sbjct: 237 ALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGADQYGKK 285
>gi|294816812|ref|ZP_06775454.1| Ribonuclease H [Streptomyces clavuligerus ATCC 27064]
gi|294321627|gb|EFG03762.1| Ribonuclease H [Streptomyces clavuligerus ATCC 27064]
Length = 285
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIK 58
M + A DG+ GNPG GW ++ + ++ SG +NN EL A ++
Sbjct: 46 MIGVMNDRIVAAADGSSKGNPGRAGWAWVVADAHGVPQRWESGPLGTASNNVAELTALLR 105
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + + + DS Y K +QW+ W++NGW+T+ V N DL + A
Sbjct: 106 LLESTPPATPLEVRMDSQYAMKAVTQWLPGWKRNGWRTASGGPVANRDLVERIDALLAGR 165
Query: 119 KVDLYWIKGH 128
V L + H
Sbjct: 166 DVTLVHVPAH 175
>gi|229512556|ref|ZP_04402027.1| ribonuclease HI [Vibrio cholerae TMA 21]
gi|229350449|gb|EEO15398.1| ribonuclease HI [Vibrio cholerae TMA 21]
Length = 145
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESITINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRKLWQQVDELSSRKYVEVFKVK 124
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G + NE+ D +A AA
Sbjct: 125 AHSGIEGNERADLLAVEAA 143
>gi|304412903|ref|ZP_07394477.1| Ribonuclease H [Shewanella baltica OS183]
gi|304348730|gb|EFM13174.1| Ribonuclease H [Shewanella baltica OS183]
Length = 92
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL +LK
Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFALTTNNRMELLAPIIALESLKE 63
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQ 90
PC+V+L +DS Y+ +G WI W+
Sbjct: 64 PCQVVLTSDSQYMRQGIMTWIHGWK 88
>gi|127512611|ref|YP_001093808.1| ribonuclease H [Shewanella loihica PV-4]
gi|126637906|gb|ABO23549.1| ribonuclease H [Shewanella loihica PV-4]
Length = 254
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN------RMELMAAIKALT 61
++ YTDG C NPG G G+ L KG+ + G A + A
Sbjct: 85 DIDIYTDGGCEPNPGEAGSGLALYKKGELAELWYGLYNPKGTNNTAELNALHQALLMARQ 144
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK-NIDLWMKFVEASAQHKV 120
L+ +V +++DS Y K S W W+ NGW+ + ++ + S + K+
Sbjct: 145 YLEQGLRVHIHSDSQYAIKCISLWAYGWKANGWRRKTGEIANLSVIQEAHELYDSLKDKL 204
Query: 121 DLYWIKGHAGNQENEKVDRI 140
L + H G + NE DR+
Sbjct: 205 KLSHVAAHVGIEGNELADRM 224
>gi|301106002|ref|XP_002902084.1| ribonuclease, putative [Phytophthora infestans T30-4]
gi|262098704|gb|EEY56756.1| ribonuclease, putative [Phytophthora infestans T30-4]
Length = 317
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAI 57
D K + + A+ DG+ N G+ + + + + E TNNR E MAA+
Sbjct: 154 DPKDPKTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRATNNRAEYMAAL 213
Query: 58 KALTA-----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+A+ + + +++DS + + ++W+ WQ+N W SD V+N DL V
Sbjct: 214 EAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLV 273
Query: 113 EASAQHKVDLYWIKGHAGN-----QENEKVDRIARNAAVSFKNK 151
++ +K H + N+ D ARNAA+S K
Sbjct: 274 AEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAARNAALSVGGK 317
>gi|167949085|ref|ZP_02536159.1| ribonuclease H [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 101
Score = 77.2 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/101 (48%), Positives = 67/101 (66%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
MELMA I+AL ALK + + TDS YV G +QWI W++NGWKT+ KK VKN DLW +
Sbjct: 1 MELMAVIQALRALKRASRARVTTDSQYVKNGITQWIHNWKRNGWKTAAKKPVKNADLWRE 60
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ AQH+V+ WIKGH+G+ ENE D++A +++
Sbjct: 61 LDQEVAQHQVEWAWIKGHSGHPENELADQLANQGIEGLRSR 101
>gi|238883080|gb|EEQ46718.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 76.8 bits (187), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK------ETTNNRMELM------- 54
Y DGAC N GG+GV + + ++ TN R EL
Sbjct: 290 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 349
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ L K ++Y+DS Y ++W +KW NGW+ S ++
Sbjct: 350 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 409
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + +KGH+G + NE+ DR+A A +
Sbjct: 410 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLANLAVDEY 453
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 26/164 (15%)
Query: 11 AYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGE------KETTNNRMELMAAIKALT 61
Y DGAC N P G+GV + + TN R EL A AL
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
Query: 62 ALKY-------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ K ++Y+DS Y K ++W KW QNGW K +
Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + ++DL +KGH+GN NE+ D +A AA +
Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAADRY 220
>gi|241956750|ref|XP_002421095.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644438|emb|CAX41253.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 266
Score = 76.8 bits (187), Expect = 8e-13, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 11 AYTDGACSGNP----GPGGWGVLLRYKGKE-------KIISGGEKETTNNRMELMAAIKA 59
Y DGA GN P G+GV ++ + TN R EL A
Sbjct: 98 VYVDGAARGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 157
Query: 60 LTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------- 105
L + + +++DS Y + ++W W +NGWK S + V N
Sbjct: 158 LKNIHNDLQSGKATGRTEIHSDSKYAIQSINEWSSNWAKNGWKNSKGEPVANKDLIQETV 217
Query: 106 ---DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ K + + +KGHAG+ NE DR+A A +
Sbjct: 218 ALKNNINKTYQDKNWGNLKFVHVKGHAGDPGNEAADRLANQGADQY 263
>gi|255725980|ref|XP_002547916.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133840|gb|EER33395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 76.8 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 28/167 (16%)
Query: 10 HAYTDGACSGNPGP----GGWGVLLRYKGKEK-------IISGGEKETTNNRMELMAAIK 58
Y DGAC GN G+GV + + TN R EL A
Sbjct: 114 VVYIDGACRGNGNKYNTSAGYGVYYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHALNH 173
Query: 59 A-------LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKT 101
+ + K + TDS +V + W KW NGW ++
Sbjct: 174 VLLNINSDIQNDECYRKTEIRTDSMFVINSITNWCYKWCNNGWNNVKGDTVANVDLIQEN 233
Query: 102 VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ + E ++ ++GH+G+ N++ DR+A A ++
Sbjct: 234 FNLMNSINEEYEDRGWGDIEFKHVRGHSGDYGNDEADRLANIGADNY 280
>gi|212716350|ref|ZP_03324478.1| hypothetical protein BIFCAT_01267 [Bifidobacterium catenulatum DSM
16992]
gi|212660603|gb|EEB21178.1| hypothetical protein BIFCAT_01267 [Bifidobacterium catenulatum DSM
16992]
Length = 408
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 24 GGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GWG + + +GG TN EL A ++AL A +++ TD
Sbjct: 1 MGWGWADHELATGGKPGHHHEGDCDAGGATNGTNQIGELCAVLEALRAHPGSEPLVIETD 60
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWIKGHAGNQ 132
S Y + W+ W++NGWK S KK VKN DL ++ V W+KGHAGN
Sbjct: 61 SQYAINCSTTWVHGWKKNGWKNSQKKPVKNADLIRAIDAEISKRPGSVKFVWVKGHAGNA 120
Query: 133 ENEKVDRIARNAAVSFKNKI 152
NEKVD +AR A ++K+
Sbjct: 121 GNEKVDELARTYAGDCRSKV 140
>gi|84390128|ref|ZP_00991390.1| ribonuclease H [Vibrio splendidus 12B01]
gi|84376782|gb|EAP93657.1| ribonuclease H [Vibrio splendidus 12B01]
Length = 146
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 11 AYTDGACSGNP-----GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
Y DGA N G G E S K TTN +ELMA I+ L +
Sbjct: 5 IYVDGAAPNNQHGCTQGGIGIAAFNEQGELEHQDSITIKRNTTNAELELMALIEGLEYAQ 64
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y+DS + KG++ W+ W++ GW+ SDKK VKN LW + E ++ V+++
Sbjct: 65 DGDVI--YSDSDFCVKGYNDWLDSWKERGWRKSDKKPVKNRHLWQQIDELRSKKYVEVFK 122
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+K H+G++ N+ D +A AA +
Sbjct: 123 VKAHSGDKGNDMADLLAVEAAEA 145
>gi|331702380|ref|YP_004399339.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929]
gi|329129723|gb|AEB74276.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929]
Length = 303
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Query: 8 EVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
++ YTDG + W L++ ++ SGGE TNNRME+MA +
Sbjct: 78 DIIVYTDGGSRNHGNHRGGHVKASDKAAWAFLVQTGSQKYFESGGEFGATNNRMEIMAFL 137
Query: 58 KALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDK--KTVKNIDLWMKF 111
+AL LK ++ + DS YV + + K
Sbjct: 138 EALKYLKRQGLQNERIGVVMDSQYVLDAIQKGWLAGWRRRGWNKSDGSKLHNKQLWQAVD 197
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ YW KGHAG++ N VD +
Sbjct: 198 ANLRDFPIIRYYWTKGHAGDEGNVFVDHLLNQTMDQM 234
>gi|59713707|ref|YP_206482.1| ribonuclease H [Vibrio fischeri ES114]
gi|59481955|gb|AAW87594.1| ribonuclease H [Vibrio fischeri ES114]
Length = 148
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 11 AYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N G GG G+ + E + + + EL
Sbjct: 8 IYIDGAAPNNQGGCMKGGIGIAVYDVNNELMDTCSITVNRATDNAELELMALVEGLEYAA 67
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS + KG+++W+ W+ GW+ +DKK V +LW + + V++ ++
Sbjct: 68 DGDIIYSDSEFCVKGYNEWLDGWKAKGWRKADKKPVAYRELWQQVDALRKEKYVEVVKVR 127
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+G + NEK D +A AA
Sbjct: 128 AHSGVEGNEKADSLASMAARK 148
>gi|37678700|ref|NP_933309.1| ribonuclease H [Vibrio vulnificus YJ016]
gi|37197441|dbj|BAC93280.1| ribonuclease HI [Vibrio vulnificus YJ016]
Length = 145
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYP 66
Y DGA N GG G+++ + E + + EL
Sbjct: 5 IYVDGAAPNNQHGCTRGGIGLVVMDEDNEIVHEESFTINRKTDNAELELLALIEALEYAE 64
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++Y+DS Y KGF+ W+ W+ W+ +DKK VKN LW + E S++ V++ +K
Sbjct: 65 DGDVIYSDSDYCVKGFNIWMDDWKDRCWRRADKKPVKNRHLWQQVDELSSRKYVEVEKVK 124
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G + NE+ D +A AA
Sbjct: 125 AHSGVEGNERADLLAVEAA 143
>gi|225711046|gb|ACO11369.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 394
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 7/148 (4%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V +TDGAC N G G G+ + N + + AI +
Sbjct: 245 VKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISRAIQIVK 304
Query: 66 PC---KVLLYTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVD 121
K+ +YTDS + + W++ W S + V+N ++ + +
Sbjct: 305 SDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFLVLDDIMKNMTIK 364
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ GH N D++AR + + K
Sbjct: 365 FIYVPGHRNIYGNNCADKLARRGSGNTK 392
>gi|260772248|ref|ZP_05881164.1| ribonuclease HI [Vibrio metschnikovii CIP 69.14]
gi|260611387|gb|EEX36590.1| ribonuclease HI [Vibrio metschnikovii CIP 69.14]
Length = 107
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 74/97 (76%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
ME++AA+ AL +LK PC V+L TDS YV +G +QWI W+Q GWKT+DKK VKN DLW
Sbjct: 1 MEMLAAVIALQSLKEPCDVILTTDSQYVRQGITQWIHNWKQRGWKTADKKPVKNADLWQA 60
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ +A+H+VD W+KGHAG++ENE D++AR+AA +
Sbjct: 61 LEKETARHQVDWRWVKGHAGHRENEMCDQLARSAAEN 97
>gi|255725982|ref|XP_002547917.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133841|gb|EER33396.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 283
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 28/171 (16%)
Query: 10 HAYTDGACSGNPGP----GGWGVLLRYKGKEKIIS-------GGEKETTNNRMELMAAIK 58
Y DGAC GN G+GV + + + TN R EL A +
Sbjct: 113 VVYIDGACRGNGNKYNSSAGYGVFYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYALCQ 172
Query: 59 ALTAL-------KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKT 101
L + K + TDS +V + W KW NGW + +K
Sbjct: 173 VLVNIVNDINAGNCRLKTEIRTDSMFVINSITTWCYKWCNNGWINAKGDTVANVDLLQKN 232
Query: 102 VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ K E ++ ++GH+G+ N++ DR+A A + N I
Sbjct: 233 FNLMKSINKEYEDRGWGDIEFIHVRGHSGDYGNDEADRLANLGADRYGNYI 283
>gi|225351001|ref|ZP_03742024.1| hypothetical protein BIFPSEUDO_02582 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158457|gb|EEG71699.1| hypothetical protein BIFPSEUDO_02582 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 392
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 24 GGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GWG + +GG TN EL A ++AL A +++ TD
Sbjct: 1 MGWGWADHELATGGKPGHHHDSDCDAGGATNGTNQIGELCAVLEALRAHPGSEPLVIETD 60
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGNQ 132
S Y + W+ W++NGWK S KK VKN DL ++ V W+KGHAGN
Sbjct: 61 SQYAINCSTTWVHGWKKNGWKNSQKKPVKNADLIRAIDAEISKRPGPVKFVWVKGHAGNA 120
Query: 133 ENEKVDRIARNAAVSFKNKI 152
NEKVD +AR A ++KI
Sbjct: 121 GNEKVDELARTYAGDCRSKI 140
>gi|156847604|ref|XP_001646686.1| hypothetical protein Kpol_1028p104 [Vanderwaltozyma polyspora DSM
70294]
gi|156117365|gb|EDO18828.1| hypothetical protein Kpol_1028p104 [Vanderwaltozyma polyspora DSM
70294]
Length = 397
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 22/168 (13%)
Query: 2 DSKHLREVHAYTDGACSGNP---GPGGWGVLLRYKGK------EKIISGGEKETTNNRME 52
SK +V Y DG+ N G+GV + E++ +G +
Sbjct: 230 RSKPADKVRVYCDGSSLHNGTAIARAGYGVYFDHDNYKDLNASERLNTGAQTNNRGEIEA 289
Query: 53 LMAAIKALT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNG---------WKTSDK 99
+ A+ ++ + ++TDS YV K + + + +
Sbjct: 290 VSNALDSIYDSLSNKGNKAEFEIWTDSEYVMKSLNDNYETIAKQKGESVANADLVMPMIE 349
Query: 100 KTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
K VK + ++ + W+KGH G NE D++A+ A+
Sbjct: 350 KYVKVKKYYEVNKDSYPGTDFKIKWVKGHEGEYGNEMADQLAKQGAMK 397
>gi|244790067|ref|NP_001156443.1| ribonuclease H1-like [Acyrthosiphon pisum]
gi|239792775|dbj|BAH72688.1| ACYPI28043 [Acyrthosiphon pisum]
Length = 157
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAA---IKALT 61
+V Y DGAC N G G GV + S TNN E+ AA I L
Sbjct: 10 DVVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAIDMLL 69
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
+V + TDS ++ +WI KW+ NGW+ TV N D+ + V
Sbjct: 70 KYTDEYRVEIMTDSMFLCNCMYKWINKWKCNGWRNCKGNTVANKDMLEQLDSCIKAMDSV 129
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+++ H + N++ D++AR A
Sbjct: 130 KFTYVRAHNKHYGNDQADKLARQGAYK 156
>gi|4357|emb|CAA40448.1| ribonuclease H [Saccharomyces cerevisiae]
Length = 192
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 1 MDSKHL--REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMA 55
+ S + + ++ Y DG+ GN G+G +E I N +
Sbjct: 22 LSSNTMYNKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIE 81
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-------------- 101
A+ + +Y K S+++ K + + T D K
Sbjct: 82 AVSEALKKIWEKLTNEKEKVNYQIKTDSEYVTKLLNDRYMTYDNKKLEGLPNSDLIVPLV 141
Query: 102 ----VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ K + W+KGH G+ NE D +A+ A
Sbjct: 142 QRFVKVKKYYELNKECFKNNGKFQIEWVKGHDGDPGNEMADFLAKKGA 189
>gi|282862923|ref|ZP_06271983.1| Ribonuclease H [Streptomyces sp. ACTE]
gi|282561905|gb|EFB67447.1| Ribonuclease H [Streptomyces sp. ACTE]
Length = 233
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ A DGA GNPGP W ++ ++ +G TNN EL A + L +
Sbjct: 3 DRIIAACDGASKGNPGPAAWAWVVADAQGRPQRWEAGPLGSATNNIAELTALRELLASTD 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V + DS Y ++W+ W++NGWKTS K V N +L ++ V +
Sbjct: 63 PTVPVEVRMDSQYAMNAVTKWLPGWKRNGWKTSGGKPVANRELVVEIDGLLDGRGVSFRY 122
Query: 125 IKGHA--GNQENEKVDRIARNAAVSFK 149
+ H G+ N D+ A AAVS +
Sbjct: 123 VPAHQVDGDPLNALADQAASEAAVSQQ 149
>gi|84386385|ref|ZP_00989413.1| ribonuclease H [Vibrio splendidus 12B01]
gi|84378809|gb|EAP95664.1| ribonuclease H [Vibrio splendidus 12B01]
Length = 146
Score = 75.7 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 11 AYTDGACSGNP-----GPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
Y DGA N G G E S K TTN +ELMA I+ L +
Sbjct: 5 IYVDGAAPNNQHGCTQGGIGIAAFNEQGELEHQDSITIKRNTTNAELELMALIEGLEYAQ 64
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y+DS + KG++ W+ W++ GW+ SDKK VKN LW + E ++ V+++
Sbjct: 65 DGDVI--YSDSDFCVKGYNDWLDNWKERGWRKSDKKPVKNRHLWQQIDELRSKKYVEVFK 122
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+K H+G++ N+ D +A AA +
Sbjct: 123 VKAHSGDKGNDMADLLAVEAAEA 145
>gi|254450523|ref|ZP_05063960.1| RNase H [Octadecabacter antarcticus 238]
gi|198264929|gb|EDY89199.1| RNase H [Octadecabacter antarcticus 238]
Length = 126
Score = 75.3 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 35 KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94
KE+ + GGE TTNNRMEL+AAI AL AL P + + TDSSYV G ++WI W+ GW
Sbjct: 12 KERNLKGGEAHTTNNRMELLAAINALEALVGPSTLTVVTDSSYVKDGITKWIYGWKAKGW 71
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
K + +KNIDLW + A +H V W+KGHAG+ ENE+ D +AR FK
Sbjct: 72 KKKGGE-IKNIDLWQRLDAARDRHDVTWKWVKGHAGHPENERADELARAGMAPFKR 126
>gi|116252419|ref|YP_768257.1| ribonuclease HI [Rhizobium leguminosarum bv. viciae 3841]
gi|115257067|emb|CAK08161.1| putative ribonuclease HI [Rhizobium leguminosarum bv. viciae 3841]
Length = 177
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 11/151 (7%)
Query: 10 HAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
H + DG G GGW V+ R + GG +++ NN MEL A ++A +
Sbjct: 25 HVFVDGCYEPGSGRGGWAFVVYRDAAEIASGFGGAEDSANNSMELTAVLRAAIWINSEAS 84
Query: 68 --KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID-------LWMKFVEASAQH 118
+++DS Y KG + W W+ NGWK S ++ S
Sbjct: 85 GEPATIWSDSVYAIKGCNSWRHIWKNNGWKKSSPNGNARRRTIANAELWKAVDLQLSQNG 144
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + W KGH+G NE+ D +A +S +
Sbjct: 145 LVTIAWCKGHSGIAGNERADALADKGRLSLR 175
>gi|50545063|ref|XP_500083.1| YALI0A15059p [Yarrowia lipolytica]
gi|49645948|emb|CAG84014.1| YALI0A15059p [Yarrowia lipolytica]
Length = 225
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA----LTA 62
YTDGAC N G GV N+ + AIK +
Sbjct: 73 EVYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQLIQE 132
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE----ASAQH 118
+YTDS Y K ++W KW++NGW V N D ++ ++
Sbjct: 133 WVNGEYYEIYTDSDYALKCVTEWCDKWERNGWVNCKGYPVSNQDTIKDILKLLNSVGCRN 192
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + + H+ + N D +AR+AA
Sbjct: 193 VLGIEKVLAHSDCEGNNGADELARDAAE 220
>gi|117928110|ref|YP_872661.1| phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
gi|117648573|gb|ABK52675.1| Phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
Length = 411
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 18/153 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAI 57
M S R + DG GNPGP G+G ++R + SG + TNN E I
Sbjct: 1 MTSAQPRRLIVEADGGARGNPGPAGYGAVVRDATTREVLAERSGYLRIATNNVAEYHGLI 60
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+A + V + DS V K + + D + A
Sbjct: 61 AGLEAAAEIDPSAFVDVRLDSQLVVKQMTGEWQI--------KHPHLQPLADRAAQLAAA 112
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V W++ + N DR+ A +
Sbjct: 113 FGSGRVTFTWVR----REANAHADRLVNAAIDA 141
>gi|313844138|ref|YP_004061801.1| hypothetical protein OlV1_169 [Ostreococcus lucimarinus virus OlV1]
gi|312599523|gb|ADQ91545.1| hypothetical protein OlV1_169 [Ostreococcus lucimarinus virus OlV1]
Length = 146
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC--K 68
YTDG+C GNPGP G ISGG+ TTNN ME+ A +KAL +
Sbjct: 4 IYTDGSCLGNPGP----GGWGVVGPGLRISGGQDNTTNNAMEMTAVVKALQQCLARDILE 59
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
+ L+TDS+YV G + WIK W++NGW+T+ VKN +LW++ S + K V+ W+K
Sbjct: 60 IRLFTDSNYVKNGITSWIKNWKRNGWRTAAGTPVKNKELWIEIDTLSQKMKSVEWRWVKA 119
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
H G+ +NE VD +A A KN
Sbjct: 120 HNGDPQNELVDSLAYQEATEIKN 142
>gi|314055251|ref|YP_004063589.1| ribonuclease H [Ostreococcus tauri virus 2]
gi|313575142|emb|CBI70155.1| ribonuclease H [Ostreococcus tauri virus 2]
Length = 146
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++V YTDG+C GNPGP G ISGG+ TTNN ME+ A +KAL
Sbjct: 1 MQDV--YTDGSCLGNPGP----GGWGVVGPGLRISGGQDNTTNNAMEMTAVVKALQQCLA 54
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDL 122
++ L+TDS+YV G + WIK W++NGW+T+ VKN +LW++ S + K V+
Sbjct: 55 RDILEIRLFTDSNYVKNGITSWIKNWKRNGWRTAAGTPVKNKELWIEIDTLSQKMKSVEW 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
W+K H G+ +NE VD +A A KN
Sbjct: 115 RWVKAHNGDPQNELVDSLAYQEATEIKN 142
>gi|308050751|ref|YP_003914317.1| ribonuclease H [Ferrimonas balearica DSM 9799]
gi|307632941|gb|ADN77243.1| ribonuclease H [Ferrimonas balearica DSM 9799]
Length = 253
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELM------AAIKALT 61
+ Y DGAC NPG G G+ L +G+ + G + A A
Sbjct: 84 DWVIYADGACDPNPGQAGTGLSLYQQGQVTELWYGLYQPMGTNNTAELNGLLAALKLAQR 143
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
+ V + DS Y S+W W+ GW + + ++
Sbjct: 144 GVDQGASVTVLCDSQYAINCVSRWADSWKAQGWTRKGDPIKNLELIQQAYALWQTLKGRI 203
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
L + GHAG + NE DR++ A
Sbjct: 204 TLAHVPGHAGIEGNELADRMSVYAVEQ 230
>gi|241204927|ref|YP_002976023.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858817|gb|ACS56484.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 177
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ H + DG G GGW V+ R + GG +++ NN MEL + ++A
Sbjct: 18 PETQDGFHVFVDGCYEPGSGHGGWAFVVYRDTAEIASGFGGAEDSANNSMELTSVLRAAI 77
Query: 62 ALKYPC---KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID-------LWMKF 111
+ V +++DS Y KG + W W+ NGWK
Sbjct: 78 WINSEASGEPVTIWSDSVYAVKGCNSWRHIWKNNGWKKGSPNGNARRRTIANAELWKAVD 137
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
++ S V + W KGH+ NE+ D +A +S +
Sbjct: 138 LQLSQNGLVTIAWCKGHSAIAGNERADALADKGRLSLRR 176
>gi|328882042|emb|CCA55281.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
Length = 499
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 50/155 (32%), Gaps = 21/155 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA- 56
M + REV DG GNPGP G+G ++ + TNN E
Sbjct: 1 MTASSSREVIVEADGGSRGNPGPAGYGAVVLDPVTGETLAEAAEYIGVATNNVAEYKGLV 60
Query: 57 --IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+KA L V + DS V + S K L +
Sbjct: 61 AGLKAARELFPDATVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAGRV 109
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+V WI + N+ DR+A A + K
Sbjct: 110 FPAGRVRYEWIP----RERNKHADRLANEAMDAGK 140
>gi|295840410|ref|ZP_06827343.1| ribonuclease HI [Streptomyces sp. SPB74]
gi|295827976|gb|EFG65750.1| ribonuclease HI [Streptomyces sp. SPB74]
Length = 232
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ A DGA GNPG W + E+ +G TNN EL A ++ L
Sbjct: 3 DRIIAACDGASKGNPGRAAWAWVAADAEGTPERWEAGPLGTATNNVAELTALLRLLETTD 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + DS Y K ++W+ W++ GWKT+ K V N +L +V +
Sbjct: 63 ARRPLEVRMDSQYAMKAVTEWLPGWKRRGWKTAAGKPVANQELVEAIDALLQGREVAFRY 122
Query: 125 IKGHA--GNQENEKVDRIARNAAVS 147
+ H G+ N D+ A A+S
Sbjct: 123 VPAHQVGGDPLNAIADQAASECAIS 147
>gi|302551031|ref|ZP_07303373.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302468649|gb|EFL31742.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 559
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 21/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKA 59
+RE DG GNPGP G+G ++ + ++ TNN E ++A
Sbjct: 1 MREFIVEADGGSRGNPGPAGYGAVVSDAATGETLREVAEYIGVATNNVAEYRGLLAGLRA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L V + DS V + S K L + +
Sbjct: 61 AHELDPDATVHVRMDSKLVIEQMSGRW-----------KIKHPDMKPLAAEAARVFPPGR 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V W+ ++N+ DR+A A +
Sbjct: 110 VTYEWMP----REQNKHADRLANEAMDA 133
>gi|257052283|ref|YP_003130116.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
gi|256691046|gb|ACV11383.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
Length = 198
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTA--LKY 65
H Y DGA GNPGP G ++ + G TTNNR E A I AL
Sbjct: 70 HVYVDGASRGNPGPAAIGWVILTGDGGIVTEGGKRIGSTTNNRAEYEALIHALEIAADYG 129
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V + +DS + + W T+D + + ++
Sbjct: 130 FDSVEVRSDSELAVRQV--------RGEWDTNDPDLRERRVRVRELFREFDDWSIE---- 177
Query: 126 KGHAGNQENEKVDRIARNA 144
H + NE+ D +A A
Sbjct: 178 --HVPREINERADALANEA 194
>gi|146421520|ref|XP_001486705.1| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 26/163 (15%)
Query: 10 HAYTDGACSGNPG----PGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIK-- 58
H Y DGA GN G+GV + ++ TN R EL A
Sbjct: 96 HIYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTGTNQRAELHALNHAL 155
Query: 59 -----ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
L P + ++++DS Y K +W KKW+ NGW+T+ V N DL K V+
Sbjct: 156 DDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAVD 215
Query: 114 ASAQHK----------VDLYWIKGHAGNQENEKVDRIARNAAV 146
A + + ++ GHAGN NE D++A A
Sbjct: 216 KVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGAD 258
>gi|156050101|ref|XP_001591012.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980]
gi|154692038|gb|EDN91776.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 16 ACSGNPGPG---GWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALKYPCKVLL 71
+ GN G G+G+ + + + E TN R EL AA++AL + + +
Sbjct: 3 SSRGNGKAGAVAGYGIFFSDGDERNVSAPLEGTPQTNQRAELTAALRALEIVPLDKNIEI 62
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-----KVDLYWIK 126
TDS+Y + W K W++NGWKTS V N DL + E + + +L W+K
Sbjct: 63 ITDSNYTINCATVWYKGWEKNGWKTSTGNAVMNEDLVKQIRERIDERTKAKVQTNLTWVK 122
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
GH N N DR+A + A+ +
Sbjct: 123 GHDENPGNVAADRLAVSGAMGKRK 146
>gi|315426222|dbj|BAJ47865.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|315427897|dbj|BAJ49489.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
Length = 134
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 16/141 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
Y DGA GNPGP G G +++ + TNN+ E A IK+L
Sbjct: 6 EIYVDGASRGNPGPAGIGYIIKIGDQSFKHREHIGVATNNQAEYHALIKSLEKALQLGVK 65
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K +Y+DS + K + K + + + + +
Sbjct: 66 KAHVYSDSELLVKQVNGAYKIR--------NNTLTILHQKLQQLITRFEEFHIT------ 111
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H ++N + DR+A A
Sbjct: 112 HVDREKNREADRLANQAIDEA 132
>gi|190344328|gb|EDK35984.2| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 26/163 (15%)
Query: 10 HAYTDGACSGNPG----PGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIK-- 58
H Y DGA GN G+GV + ++ TN R EL A
Sbjct: 96 HIYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTGTNQRAELHALNHAL 155
Query: 59 -----ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
L P + ++++DS Y K +W KKW+ NGW+T+ V N DL K V+
Sbjct: 156 DDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAVD 215
Query: 114 ASAQHK----------VDLYWIKGHAGNQENEKVDRIARNAAV 146
A + + ++ GHAGN NE D++A A
Sbjct: 216 KVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGAD 258
>gi|330932415|ref|XP_003303765.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
gi|311320008|gb|EFQ88137.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 8 EVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK------------------ET 46
+ TDGA GN G GV + + +
Sbjct: 233 TIVVSTDGASRGNGQLGARAGVGVYFGPADPRFVHLSTAQTNISDRINRNVSEPLRGSKQ 292
Query: 47 TNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID 106
TN R EL+A +AL + V + TDS Y K +W W++ W S K V+N D
Sbjct: 293 TNQRAELVAIARALDHVPIDRDVEIRTDSMYSKKCLQEWFYNWEKKNWYNSAGKEVENKD 352
Query: 107 LWMKFVEASAQH-----KVDLYWIKGHAGNQENEKVDRIARNAAV 146
L + + K + W+KGHA ++ N D +A +
Sbjct: 353 LIQPIIARIRERERCRAKTKITWVKGHAIDEGNIAADALANGGSD 397
>gi|254579441|ref|XP_002495706.1| ZYRO0C01078p [Zygosaccharomyces rouxii]
gi|238938597|emb|CAR26773.1| ZYRO0C01078p [Zygosaccharomyces rouxii]
Length = 348
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALK 64
Y DG+ N G+GV EK IS TNNR E+ A AL +
Sbjct: 188 KVYCDGSALSNGHSKSRAGYGVYFE-GHPEKSISEPLRSGPQTNNRAEIEAVSNALDVIW 246
Query: 65 YP-------CKVLLYTDSSYVHKGFSQWIKKWQQNG----------WKTSDKKTVKNIDL 107
+ TDS YV K + + + K
Sbjct: 247 QDLTTNSVKSSYEINTDSEYVSKLLNDRYATYHDSKLKELPNGDLAIPLIKKFAKVKQYY 306
Query: 108 WMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + W+KGHAG+ NEK D +AR A
Sbjct: 307 QLNKDAFANGGNFTITWVKGHAGDPGNEKADELAREGAAK 346
>gi|28900295|ref|NP_799950.1| ribonuclease H [Vibrio parahaemolyticus RIMD 2210633]
gi|260364356|ref|ZP_05777004.1| ribonuclease HI [Vibrio parahaemolyticus K5030]
gi|260880861|ref|ZP_05893216.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|260896004|ref|ZP_05904500.1| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
gi|28808606|dbj|BAC61783.1| putative ribonuclease HI [Vibrio parahaemolyticus RIMD 2210633]
gi|308087060|gb|EFO36755.1| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
gi|308091573|gb|EFO41268.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|308113681|gb|EFO51221.1| ribonuclease HI [Vibrio parahaemolyticus K5030]
Length = 169
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 9 VHAYTDGACSGNP-----GPGGWGVLLRYKGKEKIISGGEKETTNNRMEL-MAAIKALTA 62
+ Y DG+ N G G V S + T + +
Sbjct: 18 LSIYCDGSAPDNQHGCLQGGVGIAVYDALGQCVYEYSSSVRRTGGVTSQRAELLALIIAL 77
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVD 121
L +++DS Y +GF++W+ W++N W+ S KK V N DLWM E A +V
Sbjct: 78 LVAGEGDNVFSDSQYCVRGFNEWLDSWKRNAWRNSSKKPVANQDLWMLIDELKAIRPRVS 137
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ + GH+G + NE DR+A AAV K +
Sbjct: 138 VEHVAGHSGIKGNEHSDRLATQAAVDSKQTL 168
>gi|317128917|ref|YP_004095199.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522]
gi|315473865|gb|ADU30468.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522]
Length = 135
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DG +GNPGP G GV + G+ + +N+ E A IK L
Sbjct: 2 IEVYIDGGSAGNPGPSGAGVFINNNGQLIRKAFPLHVMSNHEAEFQAIIKALTLCKELGF 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + TDS + + +K +D +K ++ H V + WI
Sbjct: 62 RVISIRTDSQVLENALEKKYV---------KSEKFRFLLDEALKQMDHDFDH-VFVKWIP 111
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
++N++ D++A+ A + K K
Sbjct: 112 S----KQNKEADQLAKKAILMAKEK 132
>gi|151945939|gb|EDN64171.1| ribonuclease H [Saccharomyces cerevisiae YJM789]
gi|323303448|gb|EGA57243.1| Rnh1p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 1 MDSKHL--REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMA 55
+ S + + ++ Y DG+ GN G+G +E I N +
Sbjct: 178 LSSNTMYDKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIE 237
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-------------- 101
A+ + +Y K S+++ K + + T D K
Sbjct: 238 AVSEALKKIWEKLTNEKEKVNYQIKTDSEYVTKLLNDRYMTYDNKKLEGLPNSDLIVPLV 297
Query: 102 ----VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ K + W+KGH G+ NE D +A+ A
Sbjct: 298 QRFVKVKKYYELNKECFKNNGKFQIEWVKGHDGDPGNEMADFLAKKGA 345
>gi|282599161|ref|YP_003359078.1| putative RNaseH ribonuclease [Deftia phage phiW-14]
gi|257219231|gb|ACV50246.1| putative RNaseH ribonuclease [Deftia phage phiW-14]
Length = 177
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 4 KHLREVHAYTDGACSGNPGP---GGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
K + +VH YTDG+ N P GW +++ ++NNR E M I
Sbjct: 2 KRVTDVHVYTDGSSKHNGKPECVAGWSMVIPNLGDCMYARYGQLAPPSSNNRGEAMGVIA 61
Query: 59 ALTALKYPCKVL--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
A +YTDS Y+ K ++W KW + + +
Sbjct: 62 AAEMFARAPDFRAVIYTDSQYIQKACTEWRGKWALTQYDGVKNIDMLLPLFNIIDRS--- 118
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+K + W+KGHAG+ NE D+ A +
Sbjct: 119 INKPKILWVKGHAGDPGNELADQYAGYGMRGIR 151
>gi|6323890|ref|NP_013961.1| Rnh1p [Saccharomyces cerevisiae S288c]
gi|1350805|sp|Q04740|RNH1_YEAST RecName: Full=Ribonuclease H; Short=RNase H
gi|887615|emb|CAA90205.1| Rnh1p [Saccharomyces cerevisiae]
gi|190408461|gb|EDV11726.1| ribonuclease H [Saccharomyces cerevisiae RM11-1a]
gi|207342140|gb|EDZ69998.1| YMR234Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148820|emb|CAY82065.1| Rnh1p [Saccharomyces cerevisiae EC1118]
gi|285814239|tpg|DAA10134.1| TPA: Rnh1p [Saccharomyces cerevisiae S288c]
gi|323307664|gb|EGA60929.1| Rnh1p [Saccharomyces cerevisiae FostersO]
gi|323332148|gb|EGA73559.1| Rnh1p [Saccharomyces cerevisiae AWRI796]
gi|323336061|gb|EGA77335.1| Rnh1p [Saccharomyces cerevisiae Vin13]
gi|323347045|gb|EGA81321.1| Rnh1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353174|gb|EGA85474.1| Rnh1p [Saccharomyces cerevisiae VL3]
Length = 348
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 1 MDSKHL--REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMA 55
+ S + + ++ Y DG+ GN G+G +E I N +
Sbjct: 178 LSSNTMYNKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIE 237
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-------------- 101
A+ + +Y K S+++ K + + T D K
Sbjct: 238 AVSEALKKIWEKLTNEKEKVNYQIKTDSEYVTKLLNDRYMTYDNKKLEGLPNSDLIVPLV 297
Query: 102 ----VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ K + W+KGH G+ NE D +A+ A
Sbjct: 298 QRFVKVKKYYELNKECFKNNGKFQIEWVKGHDGDPGNEMADFLAKKGA 345
>gi|119474997|ref|ZP_01615350.1| hypothetical ribonuclease HI [marine gamma proteobacterium
HTCC2143]
gi|119451200|gb|EAW32433.1| hypothetical ribonuclease HI [marine gamma proteobacterium
HTCC2143]
Length = 250
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME------LMAAIKALT 61
+V Y DGAC NPG G G+ + K + G + A
Sbjct: 81 DVAIYCDGACDPNPGKAGTGIAIYKGKKLNQLWYGLYNPAGTNNTAELLGLYHSLTLAKG 140
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM-KFVEASAQHKV 120
+ + ++ DS+Y +W + W+ GWK + + + + +
Sbjct: 141 EINKGLSIAIHCDSTYAINCVKKWAEGWKAKGWKKKNGEIKNLDIIKPAHALYVEIAPYI 200
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ + H+G + NE DR++ A
Sbjct: 201 QIQHVSAHSGIEGNELADRMSVIAIE 226
>gi|332254936|ref|XP_003276592.1| PREDICTED: ribonuclease H1-like [Nomascus leucogenys]
Length = 258
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 35/147 (23%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 142 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 201
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + V
Sbjct: 202 QNINKLVLYTDSMFTINGKLSHLISS------------------------------VFPM 231
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ GH+G NE+ DR+AR A ++
Sbjct: 232 HVPGHSGFIGNEEADRLAREGAKQSED 258
>gi|302517559|ref|ZP_07269901.1| ribonuclease HI [Streptomyces sp. SPB78]
gi|318057935|ref|ZP_07976658.1| ribonuclease H [Streptomyces sp. SA3_actG]
gi|302426454|gb|EFK98269.1| ribonuclease HI [Streptomyces sp. SPB78]
Length = 232
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ A DGA GNPG W + E+ +G TNN EL A ++ L A
Sbjct: 3 DRIIAACDGASKGNPGRAAWAWVAADAEGTPERWEAGPLGTATNNVAELTALLRLLEATD 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + DS Y K ++W+ W++ GWKT+ K V N +L +V+ +
Sbjct: 63 PVRPLEVRMDSQYAMKAVTEWLPGWKRRGWKTAAGKPVANQELVEAIDALLQGREVEFRY 122
Query: 125 IKGHA--GNQENEKVDRIARNAAVS 147
+ H G+ N D+ A A+S
Sbjct: 123 VPAHQVGGDPLNAIADQAASECAIS 147
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 7/149 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVL--LRYKGKEKIISGGEKETTNNRMELMAAIK 58
M+ +R YTDG+ N G V L+ G + ++ + +
Sbjct: 1440 MEPTTMR---IYTDGSSI-NGHVGAAAVAPSLQDNGICMKRTQYMGVSSTSTVYSAELKG 1495
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-Q 117
+ AL+ + + F+ Q + ++
Sbjct: 1496 LVLALQMVIDIHATGTAPGKCAIFTDNQAAVQAVRNPKNSSGQYILVEAIQVLDRLRDLG 1555
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V +WI H G NE+ DR+A+ AA
Sbjct: 1556 WEVQFHWIPAHVGVPGNEEADRLAKRAAD 1584
>gi|194335824|ref|YP_002017618.1| ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
gi|194308301|gb|ACF43001.1| ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
Length = 146
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 27 GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI 86
G + + + I+G TTNNRMEL AAI+AL ALK PC+V LY+DSSY+ ++
Sbjct: 23 GCAVDVRLHDSSIAGYSPATTNNRMELSAAIEALEALKEPCRVDLYSDSSYLVNAINEGW 82
Query: 87 KKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
K TS KK V+NIDLW K ++ H + + +KGH+ N N + D +AR A
Sbjct: 83 LKRWTINNWKTSTKKNVENIDLWKKILKLLTLHTITFHKVKGHSDNPYNNRCDTLAREAI 142
Query: 146 VS 147
Sbjct: 143 KK 144
>gi|227512567|ref|ZP_03942616.1| ribonuclease H [Lactobacillus buchneri ATCC 11577]
gi|227084182|gb|EEI19494.1| ribonuclease H [Lactobacillus buchneri ATCC 11577]
Length = 329
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 17/162 (10%)
Query: 7 REVHAYTDGACS--GN--------PGPGGWG--VLLRYKGKEKIISGGEKETTNNRMELM 54
++ YTDG GN W +L+ +E +GGE TNNRME+M
Sbjct: 86 DDIVVYTDGGSRSHGNRSGEHVKQGDKAAWAYLILIANPKQEVSDTGGEYGATNNRMEIM 145
Query: 55 AAIKALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
+KALT L + + +DS YV ++ + + N +LW +
Sbjct: 146 GLLKALTYLADHQLEEQPISIVSDSKYVLDAVTKGWLSGWRRRGWKRSGGPLLNKELWQQ 205
Query: 111 FVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + +W KGHA N+ N VD + K
Sbjct: 206 IDALLQRFSNIRYHWTKGHASNEGNVFVDHLLNQTMDEMAPK 247
>gi|227522791|ref|ZP_03952840.1| ribonuclease H [Lactobacillus hilgardii ATCC 8290]
gi|227090055|gb|EEI25367.1| ribonuclease H [Lactobacillus hilgardii ATCC 8290]
Length = 329
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 17/161 (10%)
Query: 8 EVHAYTDGACS--GN--------PGPGGWG--VLLRYKGKEKIISGGEKETTNNRMELMA 55
++ YTDG GN W +L+ +E +GGE TNNRME+M
Sbjct: 87 DIVVYTDGGSRSHGNRSGEHVKQGDKAAWAYLILIANPKQEVSDTGGEYGATNNRMEIMG 146
Query: 56 AIKALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
+KALT L + + +DS YV ++ + + N +LW +
Sbjct: 147 LLKALTYLADHQLEEQPISIVSDSKYVLDAVTKGWLSGWRRRGWKRSGGPLLNKELWQQI 206
Query: 112 VEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + +W KGHA N+ N VD + K
Sbjct: 207 DALLQRFSNIRYHWTKGHASNEGNVFVDHLLNQTMDEMAPK 247
>gi|154486791|ref|ZP_02028198.1| hypothetical protein BIFADO_00617 [Bifidobacterium adolescentis
L2-32]
gi|154084654|gb|EDN83699.1| hypothetical protein BIFADO_00617 [Bifidobacterium adolescentis
L2-32]
Length = 427
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 24 GGWGVLL---------RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GW ++ +GG TN EL A ++AL A +++ TD
Sbjct: 1 MGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVLEALRAHPGSEDLVIETD 60
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWIKGHAGNQ 132
S Y ++W++ W++NGWK S KK VKN DL A V W+KGHAGN
Sbjct: 61 SQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAHRAGSVRFVWVKGHAGNA 120
Query: 133 ENEKVDRIARNAAVSFKNKI 152
NEKVD +AR A ++ +
Sbjct: 121 GNEKVDELARTYAGDCRSHV 140
>gi|260947408|ref|XP_002618001.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
gi|238847873|gb|EEQ37337.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
Length = 303
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 11 AYTDGACSGNPGPG----GWGVLLRYKGKEKIISGGEK-------ETTNNRMELMAAIKA 59
Y DGA GN G G+GV K + G + + TN R EL A + A
Sbjct: 141 VYVDGAARGNGKSGIPNAGYGVYFGPNDKRNVSQGLHEVDDVDRIKPTNQRAELHALVHA 200
Query: 60 LTALKYPCK--VLLYTDSSYVHKGFSQWIKKWQQNGWKT------SDKKTVKNIDLWMKF 111
L + TDS+Y W KW+ NGW ++K V++ +
Sbjct: 201 LDVAAKDSTTGYEILTDSAYAKNCVETWADKWEANGWVNTRGEKVANKDLVQSALTKYRE 260
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + ++GH+G + NE+ D +A A
Sbjct: 261 AKERHGDDFSITHVRGHSGIEGNEQADSLANKGADDM 297
>gi|50304317|ref|XP_452108.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641240|emb|CAH02501.1| KLLA0B12958p [Kluyveromyces lactis]
Length = 370
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 19/157 (12%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ Y DG+ N G+G+ + + TNNR E+ A AL+ +
Sbjct: 212 NVYCDGSSFNNGFEGARAGYGIYFEGEDRRIARPLTNGNQTNNRAEISAVSDALSDIWDN 271
Query: 67 -------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT---------VKNIDLWMK 110
K +++TDS YV K + + + + K +
Sbjct: 272 LKEGKKLNKYVIHTDSEYVSKMLNDYANHVDPQQLQKAPNADLIVPMVQNYTKVKQFYEV 331
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + +++ W+KGHAG NE D++A+ A+
Sbjct: 332 NKDVVKDNGLEVKWVKGHAGVPGNEIADQLAKEGAMK 368
>gi|154277178|ref|XP_001539430.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413015|gb|EDN08398.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 699
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 388 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVSAC 447
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 448 QALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 504
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 505 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 533
>gi|333028792|ref|ZP_08456856.1| putative ribonuclease H [Streptomyces sp. Tu6071]
gi|332748644|gb|EGJ79085.1| putative ribonuclease H [Streptomyces sp. Tu6071]
Length = 245
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKA 59
D + A DGA GNPG W + E+ +G TNN EL A ++
Sbjct: 11 DRGMSDRIIAACDGASKGNPGRAAWAWVAADAEGTPERWEAGPLGTATNNVAELTALLRL 70
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L + + DS Y K ++W+ W++ GWKT+ K V N +L +
Sbjct: 71 LETTDPVRPLEVRMDSQYAMKAVTEWLPGWKRRGWKTAAGKPVANQELVEAIDALLQGRE 130
Query: 120 VDLYWIKGHA--GNQENEKVDRIARNAAVS 147
V+ ++ H G+ N D+ A A+S
Sbjct: 131 VEFRYVPAHQVGGDPLNAIADQAASECAIS 160
>gi|289640941|ref|ZP_06473111.1| Phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
gi|289509256|gb|EFD30185.1| Phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
Length = 380
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI 57
M + R + DG GNPGP G+G L+R +G TNN E I
Sbjct: 1 MSDRPARRLVVEADGGSRGNPGPAGYGALVRDADTGAVLAERAGAIGRATNNVAEYQGLI 60
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+A L V + DS V + S K A
Sbjct: 61 AGLRAAADLAPDADVEVRMDSKLVVEQMSGRW----------KIKHPAMRPLATQAADVA 110
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+V WI + N DR+A A +
Sbjct: 111 REFPRVRYTWIP----RERNAHADRLANEAMDAA 140
>gi|311087142|gb|ADP67222.1| ribonuclease H [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 97
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 56/88 (63%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPG GG+G +LRYK EKI++ G TTNNRMELMA I L L
Sbjct: 2 LKIVKIFTDGSCLGNPGAGGYGTILRYKKHEKILTSGFHLTTNNRMELMAVISGLEFLNQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNG 93
C V + TDS YV KG W+ W++
Sbjct: 62 SCHVEITTDSLYVKKGIIDWMPIWEKKN 89
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 73.0 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVL--LRYKGKEKIISGGEKETTNNRMELMAAIK 58
M+ +R YTDG+ N G V L+ G + ++ + +
Sbjct: 1600 MEPTTMR---IYTDGSSI-NGHVGAAAVAPSLQDNGICMQRTQYMGASSTSTVYSAELKG 1655
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-Q 117
+ AL+ + + F+ Q ++
Sbjct: 1656 LVLALQMVIDIHATGTAPGKCAIFTDNQAAVQAVRNPKHSSGQYILVEAIQVLDRLRDLG 1715
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V +WI H G NE+ DR+A+ AA
Sbjct: 1716 WEVQFHWIPAHVGVPGNEEADRLAKRAAD 1744
>gi|227509620|ref|ZP_03939669.1| ribonuclease H [Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227190982|gb|EEI71049.1| ribonuclease H [Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 329
Score = 73.0 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 17/162 (10%)
Query: 7 REVHAYTDGACS--GN--------PGPGGWG--VLLRYKGKEKIISGGEKETTNNRMELM 54
++ YTDG GN W +L+ +E +GGE TNNRME+M
Sbjct: 86 DDIIVYTDGGSRSHGNRSGEHVKQGDKAAWAYLILIANPKQEVSDTGGEYGATNNRMEIM 145
Query: 55 AAIKALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
+KALT L V + +DS YV ++ + + N +LW +
Sbjct: 146 GLLKALTYLADHQLEEQPVSIVSDSKYVLDAVTKGWLSGWRRRGWKRSGGPLLNKELWQQ 205
Query: 111 FVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + +W KGHA N+ N VD + K
Sbjct: 206 IDALLQRFSNIRYHWTKGHASNEGNVFVDHLLNQTMDEMAPK 247
>gi|255994355|ref|ZP_05427490.1| ribonuclease HI [Eubacterium saphenum ATCC 49989]
gi|255993068|gb|EEU03157.1| ribonuclease HI [Eubacterium saphenum ATCC 49989]
Length = 206
Score = 73.0 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 37/179 (20%)
Query: 7 REVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-A 62
+ Y+DG+C GN GG+G +L ++ +K + GG TTNN MEL+A IKA
Sbjct: 6 NRIRIYSDGSCRGNQSDENLGGFGAILEFRDHKKEVKGGMVNTTNNVMELLAIIKAFRLI 65
Query: 63 LKYPCKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V +++DS+Y+ FSQ W KKW++NG+ TS K+ VKN++LW + + +A+ V
Sbjct: 66 KTDKYSVDVFSDSAYIVNCFSQGWYKKWEKNGFITSSKEPVKNVELWKELIGYNAKFNVV 125
Query: 122 LYWIKGHAGNQ--------------------------------ENEKVDRIARNAAVSF 148
+ IKGH N + D +A +AA
Sbjct: 126 FHKIKGHLDLDATEATLKKAYTHFLKDKSNKLYTYDDFMYIACMNNRADALATSAASEL 184
>gi|290960926|ref|YP_003492108.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260650452|emb|CBG73568.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 492
Score = 73.0 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 49/151 (32%), Gaps = 21/151 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KA 59
+RE DG GNPGP G+G ++ + TNN E I KA
Sbjct: 1 MREFIVEADGGSRGNPGPAGYGSVVLDAVTGETLVEAAEYIGVATNNVAEYRGLIAGLKA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L V + DS V + S K L + +
Sbjct: 61 AYELDPEASVRVRMDSKLVVEQLSGRW-----------KIKHPDMKPLAAEAARVFPPGR 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V W+ ++N+ DR+A A + K
Sbjct: 110 VTYEWMP----REQNKHADRLANEAMDAGKR 136
>gi|308491388|ref|XP_003107885.1| hypothetical protein CRE_12596 [Caenorhabditis remanei]
gi|308249832|gb|EFO93784.1| hypothetical protein CRE_12596 [Caenorhabditis remanei]
Length = 145
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 15/155 (9%)
Query: 1 MDSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
M + + YTDG+C G+GV +NR EL AA
Sbjct: 1 MSGQTPNP-NVYTDGSCRNQGTANAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQ 59
Query: 58 KALTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+A+ + V +++DS YV + + + N DL
Sbjct: 60 QAVKTASSQGYSGVNIHSDSHYVRDAINNSAQFQR---------APAANRDLMQSINSMK 110
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ V + +KGH+G+Q N + +AR A S K
Sbjct: 111 SNVSVSAHHVKGHSGHQGNSQAHSLARAGANSGKK 145
>gi|154275794|ref|XP_001538742.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413815|gb|EDN09180.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1621
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1310 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1369
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1370 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1426
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1427 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1455
>gi|297584202|ref|YP_003699982.1| ribonuclease H [Bacillus selenitireducens MLS10]
gi|297142659|gb|ADH99416.1| ribonuclease H [Bacillus selenitireducens MLS10]
Length = 129
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ YTDGA GNPGP G G+ ++ + + +N+ E A I +
Sbjct: 2 IEIYTDGASKGNPGPAGAGIFMKKGATLERYAVPLGIMSNHEAEFHACIIALEKLQERDE 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V L +DS + + K + L + ++ + WI
Sbjct: 62 RIVSLRSDSMLLVDAVEKDYVKQ-----------PIYKPLLERILILGASFDHCFIKWIP 110
Query: 127 GHAGNQENEKVDRIARNAAVS 147
G +EN++ D +AR A
Sbjct: 111 G----KENKEADHLARQAIHK 127
>gi|154270331|ref|XP_001536021.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410035|gb|EDN05423.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 590
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 388 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 447
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 448 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 504
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 505 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 533
>gi|182440384|ref|YP_001828103.1| putative ribonuclease H [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178468900|dbj|BAG23420.1| putative ribonuclease H [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 241
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 6 LRE-VHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ E + A DGA GNPGP W ++ + +G TNN EL A + L +
Sbjct: 1 MNESIIAACDGASKGNPGPAAWAWVVADALGEPVRWEAGPLGTATNNVAELTALAQLLES 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ +V + DS Y ++W+ W++NGWKTS K V N +L + A V
Sbjct: 61 IDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSAGKPVANRELVTRIDALLADRPVTF 120
Query: 123 YWIKGHA--GNQENEKVDRIARNAA 145
++ H G+ N D+ A A
Sbjct: 121 RYVPAHQVNGDPLNAIADQAADEVA 145
>gi|154287920|ref|XP_001544755.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408396|gb|EDN03937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 787
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 476 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 535
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 536 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGVRGSAAASSNWAYNRCHELLR---QH 592
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 593 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 621
>gi|255714767|ref|XP_002553665.1| KLTH0E04202p [Lachancea thermotolerans]
gi|238935047|emb|CAR23228.1| KLTH0E04202p [Lachancea thermotolerans]
Length = 381
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGG-EKETTNNRMELMAAIKALTA 62
++ + Y DG+ N G+GV G I E TNNR E+ A AL
Sbjct: 220 QDCNVYCDGSALSNGTRSSRAGYGVYFEQDGGNNISEPLLEGAQTNNRAEIQAVSSALDQ 279
Query: 63 LK-------YPCKVLLYTDSSYVHKGFSQWIKKW---QQNGWKTSD------KKTVKNID 106
+ + + TDS YV K + + + SD +K VK
Sbjct: 280 IWTNLTANKKNLRYQIKTDSEYVAKLLNDRYMGYSVQKLEQLPNSDLIAPLVQKFVKVKK 339
Query: 107 LWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ E K + W++GHAG NEK D +AR A
Sbjct: 340 FYEINEEVFGSSKFHIEWVRGHAGEAGNEKADELARLGASK 380
>gi|154282145|ref|XP_001541885.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412064|gb|EDN07452.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1278
Score = 72.2 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 959 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1018
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1019 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1075
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1076 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1104
>gi|110667198|ref|YP_657009.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109624945|emb|CAJ51357.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
Length = 198
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL---KYP 66
H Y DGAC GNPGP G +L G E T N AA++ +
Sbjct: 71 HVYFDGACRGNPGPAAIGWVLVTNEGIIADGGEEIGKTTNNRAEYAALERAIEMARQYGF 130
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ + DS + + + L V + W
Sbjct: 131 TEIDIRGDSQLIIRQVTGEY--------------DTNEPTLREYRVRVRELLQTFDRWSI 176
Query: 127 GHAGNQENEKVDRIARNA 144
H N D++A A
Sbjct: 177 EHVPRDVNSHADKLANEA 194
>gi|239931585|ref|ZP_04688538.1| bifunctional RNase H/acid phosphatase [Streptomyces ghanaensis ATCC
14672]
gi|291439957|ref|ZP_06579347.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342852|gb|EFE69808.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 400
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 21/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKA 59
+ E DG GNPGP G+G ++ + TNN E ++A
Sbjct: 1 MGEFIVEADGGSRGNPGPAGYGAVVSDAATGETLAETAEYLGVATNNVAEYRGLLAGLRA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
AL V + DS V + + K L + +
Sbjct: 61 AHALDPRATVHVRMDSKLVIEQMTGRW-----------KIKHPDMKPLAAQAARVFPPER 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V WI + N+ DR+A A +
Sbjct: 110 VTYEWIP----RERNKHADRLANEAMDA 133
>gi|154274337|ref|XP_001538020.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415628|gb|EDN10981.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1128
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 817 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 876
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 877 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 933
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ AA S
Sbjct: 934 NVGLKWAPGHMGIEGNEEADRLAKRAASS 962
>gi|326781053|ref|ZP_08240318.1| ribonuclease H [Streptomyces cf. griseus XylebKG-1]
gi|326661386|gb|EGE46232.1| ribonuclease H [Streptomyces cf. griseus XylebKG-1]
Length = 249
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKA 59
D + A DGA GNPGP W ++ + +G TNN EL A +
Sbjct: 6 DRGMNESIIAACDGASKGNPGPAAWAWVVADALGEPVRWEAGPLGTATNNVAELTALAQL 65
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L ++ +V + DS Y ++W+ W++NGWKTS K V N +L + A
Sbjct: 66 LESIDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSAGKPVANRELVTRIDALLADRP 125
Query: 120 VDLYWIKGHA--GNQENEKVDRIARNAA 145
V ++ H G+ N D+ A A
Sbjct: 126 VTFRYVPAHQVNGDPLNAIADQAADEVA 153
>gi|319651260|ref|ZP_08005390.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
gi|317397040|gb|EFV77748.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
Length = 133
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 19/146 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA +GNPGP G G+ ++ G+ + S + N+ E A I + K
Sbjct: 2 IEVYIDGASAGNPGPSGAGIFIKNNGQVERYSIPLGKMENHEAEYRAFIHALEICIEKGY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL-YWI 125
V TDS V++ + K ++ L +E + Q + W+
Sbjct: 62 KTVSFRTDSQLVNRAVEKEFVKNKKFA------------PLLENALELTRQFDLFFMKWV 109
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
EN+ D +AR A + K
Sbjct: 110 PS----SENKGADELARAAIRKNRTK 131
>gi|154282135|ref|XP_001541880.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412059|gb|EDN07447.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 844
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 533 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 592
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 593 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 649
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 650 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 678
>gi|154283763|ref|XP_001542677.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410857|gb|EDN06245.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 709
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IK 58
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 391 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 450
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 451 WALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 507
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 508 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 536
>gi|225873970|ref|YP_002755429.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
gi|225794363|gb|ACO34453.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
Length = 221
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTALKYP 66
+ AY DG GNPGP G+GV L + +K + TNN E + AL
Sbjct: 11 ITAYCDGGSRGNPGPAGYGVYLEDEQGQKVDELYEFLGVKTNNVAEYSGLLAALEFALEE 70
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
L S+ + K Q ++ + D + V +++
Sbjct: 71 GHPCLRV------VADSELMVKQMQGKYRVNSPDLRPLYDEAKRRVARLDGFRIE----- 119
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
H +N+ DR+A A K
Sbjct: 120 -HVLRGKNKHADRLANLAMDEGTRK 143
>gi|154281205|ref|XP_001541415.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411594|gb|EDN06982.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 624
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 306 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 365
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 366 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 422
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 423 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 451
>gi|302534166|ref|ZP_07286508.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
gi|302443061|gb|EFL14877.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
Length = 180
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KA 59
+ DG GNPGP G+G ++ + TNN E I KA
Sbjct: 1 MPRFVVEADGGSRGNPGPAGYGAVVLDPATGETLAERAEFIGVATNNVAEYKGLIAGLKA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L V + DS V + S K L + + + +
Sbjct: 61 AAELAPDAVVRVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAAKILPRGQ 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V WI + N+ DR+A A + K
Sbjct: 110 VTYEWIP----RERNKHADRLANEAMDAGKR 136
>gi|206891174|ref|YP_002248860.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743112|gb|ACI22169.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 132
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
++ Y DGA GNPG G G ++ + K+ IS +TTNN E A IK L
Sbjct: 1 MKA-KIYCDGASRGNPGDAGIGCVIIFDNKKVEISEYIGKTTNNVAEYTALIKGLEEALR 59
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ +++DS + + K +K V + K + ++++
Sbjct: 60 QKAQEIEIFSDSELLVHQINGIYKVR--------NKNLVPLYEKAKKLLSNFKKYQIF-- 109
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
H + N D++A+ A+ K
Sbjct: 110 ----HIYRENNFIADKLAKEASWKSKK 132
>gi|154276844|ref|XP_001539267.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414340|gb|EDN09705.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 919
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 608 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 667
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 668 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 724
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 725 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 753
>gi|94967119|ref|YP_589167.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
gi|94549169|gb|ABF39093.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
Length = 211
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 14/146 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKAL 60
K + + A+ DG GNPGP G+GV+L + +K+ SG TNN E + AL
Sbjct: 11 KKPEKILIAHVDGGARGNPGPAGFGVVLEDERGQKVDALSGFLGHQTNNVAEYSGLLAAL 70
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ L S+ + K + +K + + ++
Sbjct: 71 DYAQKHGFKALKV------VADSELLVKQIRGEYKVKSPNLLDLYSRARVMIRTLDWFRI 124
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+ H N++ D +A A
Sbjct: 125 E------HTLRGGNKEADALANEAMD 144
>gi|154271472|ref|XP_001536589.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409259|gb|EDN04709.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1184
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ + ++ + A
Sbjct: 873 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSSMSHIFDAEAVGAC 932
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 933 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 989
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 990 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1018
>gi|154270408|ref|XP_001536059.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409986|gb|EDN05374.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1597
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1338 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1397
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1398 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1454
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W GH G + NE+ DR+A+ A S
Sbjct: 1455 NLGLKWAPGHMGIEGNEEADRLAKRAVSS 1483
>gi|294812367|ref|ZP_06771010.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|326440801|ref|ZP_08215535.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|294324966|gb|EFG06609.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 499
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 47/150 (31%), Gaps = 21/150 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKA 59
+R DG GNPGP G+G ++ + TNN E +KA
Sbjct: 1 MRSFVVEADGGSRGNPGPAGYGAVVIDAASGETLAETAEYIGVATNNVAEYKGLVAGLKA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
AL V + DS V + S K L +
Sbjct: 61 AHALDPDAMVRVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAGRVFPAAS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V WI + N+ DR+A A + +
Sbjct: 110 VSYEWIP----RERNKHADRLANEAMDAGR 135
>gi|68473368|ref|XP_719242.1| hypothetical protein CaO19.13009 [Candida albicans SC5314]
gi|68473601|ref|XP_719125.1| hypothetical protein CaO19.5563 [Candida albicans SC5314]
gi|46440929|gb|EAL00230.1| hypothetical protein CaO19.5563 [Candida albicans SC5314]
gi|46441052|gb|EAL00352.1| hypothetical protein CaO19.13009 [Candida albicans SC5314]
Length = 233
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 11 AYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGE------KETTNNRMELMAAIKALT 61
Y DGAC N P G+GV + + TN R EL A AL
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
Query: 62 ALKY-------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ K ++Y+DS Y K ++W KW QNGW K +
Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + ++DL +KGH+GN NE+ D +A AA
Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAAD 218
>gi|154272902|ref|XP_001537303.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415815|gb|EDN11159.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 970
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 659 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 718
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 719 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGILGSAAASSNWAYNRCHELLR---QH 775
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 776 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 804
>gi|291457246|ref|ZP_06596636.1| ribonuclease H [Bifidobacterium breve DSM 20213]
gi|291381081|gb|EFE88599.1| ribonuclease H [Bifidobacterium breve DSM 20213]
Length = 347
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 24 GGWGVLLRYKG------KEKIISGG----EKETTNNRMELMAAIKALTALKYPCKVLLYT 73
GW K E G TN EL A ++AL A +L+ +
Sbjct: 1 MGWAWADHDKNAGGTAGHEHDDHGYGAGGATNGTNQIGELCAVLEALRAHPGSEPLLIES 60
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGN 131
DS Y + W++ W++NGWK S KK VKN++L +Q V+ W+KGHAGN
Sbjct: 61 DSQYAINCSTTWVRGWKKNGWKNSQKKPVKNVELVKAIDREISQRPGPVNFKWVKGHAGN 120
Query: 132 QENEKVDRIARNAAVSFKN 150
+ NE VD +AR A ++
Sbjct: 121 EGNELVDELARTYAGDCRS 139
>gi|154280733|ref|XP_001541179.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411358|gb|EDN06746.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 650
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 339 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 398
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 399 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 455
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 456 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 484
>gi|322691828|ref|YP_004221398.1| ribonuclease H [Bifidobacterium longum subsp. longum JCM 1217]
gi|320456684|dbj|BAJ67306.1| ribonuclease H [Bifidobacterium longum subsp. longum JCM 1217]
Length = 290
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Query: 24 GGWGVLL---------RYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
GW +K + +GG TN EL A ++AL A P +L+ +
Sbjct: 1 MGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVLEALRAHPGPEPLLIES 60
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGN 131
DS Y ++W+K W++NGWK S KK VKN +L +Q VD W+KGHAGN
Sbjct: 61 DSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQRPGPVDFRWVKGHAGN 120
Query: 132 QENEKVDRIARNAAVSFKN 150
+ NE VD +AR A ++
Sbjct: 121 EGNELVDELARTYAGDCRS 139
>gi|227546519|ref|ZP_03976568.1| ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|227213068|gb|EEI80947.1| ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813]
Length = 290
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Query: 24 GGWGVLL---------RYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
GW +K + +GG TN EL A ++AL A P +L+ +
Sbjct: 1 MGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVLEALRAHPGPEPLLIES 60
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGN 131
DS Y ++W+K W++NGWK S KK VKN +L +Q VD W+KGHAGN
Sbjct: 61 DSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQRPGPVDFRWVKGHAGN 120
Query: 132 QENEKVDRIARNAAVSFKN 150
+ NE VD +AR A ++
Sbjct: 121 EGNELVDELARTYAGDCRS 139
>gi|317496012|ref|ZP_07954374.1| RNase H [Gemella moribillum M424]
gi|316913916|gb|EFV35400.1| RNase H [Gemella moribillum M424]
Length = 203
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 18/154 (11%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-------EKETTNNRMELMAA 56
+ + V+AY DG+ G G GV++ + E +E
Sbjct: 58 EKVEGVYAYIDGSYDRINGIYGSGVVIVDGDQHYEYKHAGNKGEYAELHNVAGELEAAKF 117
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ K ++ L+ D + + W+ N T + K + S
Sbjct: 118 VMWYAVDKKISEITLFYDYQGIESWVTGK---WKTNLDYTKNYKEFA--------DKVST 166
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ KV+ +K H G + NE+VD++A+ A FK
Sbjct: 167 RVKVNFVKVKAHTGVELNERVDKLAKEAIAEFKK 200
>gi|154287174|ref|XP_001544382.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408023|gb|EDN03564.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 122 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 181
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 182 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 238
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 239 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 267
>gi|241956674|ref|XP_002421057.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644400|emb|CAX41214.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 233
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 11 AYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEK------ETTNNRMELMAAIKALT 61
Y DGAC N P G+GV + + TN R EL A AL
Sbjct: 57 IYVDGACRHNGSPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGLIPTNQRAELWAMNHALR 116
Query: 62 ALKY-------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ K ++Y+DS Y K + W +KW +NGW K +
Sbjct: 117 NIWNELEEETEDGKAIIYSDSIYAIKCLTDWPQKWTRNGWLNVHGQTISNYDLVTKNYEL 176
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + +++L ++GH+GN NE+ D +A AA
Sbjct: 177 YEWINDEYDDRGWGQLNLIHVRGHSGNDGNEEADNLANLAAD 218
>gi|154276786|ref|XP_001539238.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414311|gb|EDN09676.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 935
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 624 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 683
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 684 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 740
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 741 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 769
>gi|154281309|ref|XP_001541467.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411646|gb|EDN07034.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1372 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1431
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1432 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1488
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1489 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1517
>gi|313240910|emb|CBY33195.1| unnamed protein product [Oikopleura dioica]
Length = 391
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 10 HAYTDGACSGNPGP-----GGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDGAC GN G GV K S E E + N AI
Sbjct: 224 VVYTDGACPGNQNKKGLRFSGSGVWWGPAKADSVPNSRFENEYSTNNFGEALAILHAVRH 283
Query: 64 ---KYPCKVLLYTDSSYVHKGFSQWIKKWQQN----GWKTSDKKTVKNIDLWMKFVEASA 116
K K+ + TDS + WI KW++ W DK + + +++ + +
Sbjct: 284 AKEKKFKKIEVRTDSKFCISALDVWIIKWKRFAVNGKWTKYDKSPIIHQEIFSEIDDIRR 343
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ V +KGH G NE+ D++A AA +
Sbjct: 344 KEVDVVFRHVKGHNGEVGNEQADKLAVKAAEEHRR 378
>gi|297199289|ref|ZP_06916686.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
gi|297147350|gb|EFH28596.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
Length = 441
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKAL 60
RE DG GNPGP G+G ++ TNN E ++A
Sbjct: 49 REFIVEADGGSRGNPGPAGYGCVVLDAATGETLVETYEYLGVVTNNVAEYRGLLAGLRAA 108
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L +V + DS V + S K L + +V
Sbjct: 109 HDLDPSARVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLALAAGRVFPPGRV 157
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
WI ++N+ DR+A A S
Sbjct: 158 TYEWIP----REQNKHADRLANEAMDS 180
>gi|268536398|ref|XP_002633334.1| Hypothetical protein CBG06073 [Caenorhabditis briggsae]
gi|187034482|emb|CAP26299.1| hypothetical protein CBG_06073 [Caenorhabditis briggsae AF16]
Length = 146
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 14/146 (9%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LK 64
H YTDG+C P G+GV +NR EL AA +A+ +
Sbjct: 10 HVYTDGSCRNQGTPNAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQQAIQTASRQ 69
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V +++DS YV + + + N DL + V +
Sbjct: 70 GYSGVNIHSDSHYVRNAINNSDQFQR---------APATNRDLMQSINSMKSNVSVSAHH 120
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
+KGH+G+ N + +A A K
Sbjct: 121 VKGHSGHHGNSQAHSLASAGAKGGKK 146
>gi|154275176|ref|XP_001538439.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414879|gb|EDN10241.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 122 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 181
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 182 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 238
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 239 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 267
>gi|326779661|ref|ZP_08238926.1| Phosphoglycerate mutase [Streptomyces cf. griseus XylebKG-1]
gi|326659994|gb|EGE44840.1| Phosphoglycerate mutase [Streptomyces cf. griseus XylebKG-1]
Length = 451
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKA---- 59
R+V DG GNPGP G+G ++ + TNN E I
Sbjct: 5 RQVVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAA 64
Query: 60 ---LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+V + DS V + S K L +
Sbjct: 65 KALFPDAGDALRVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAARAAAVLP 113
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V WI +N+ DR+A A + ++
Sbjct: 114 PSSVTYEWIP----RAQNKHADRLANEAMDAGRD 143
>gi|182439007|ref|YP_001826726.1| bifunctional RNase H/acid phosphatase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178467523|dbj|BAG22043.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 441
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKA---- 59
R+V DG GNPGP G+G ++ + TNN E I
Sbjct: 5 RQVVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAA 64
Query: 60 ---LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+V + DS V + S K L +
Sbjct: 65 KALFPDAGDALRVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAARAAAVLP 113
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V WI +N+ DR+A A + ++
Sbjct: 114 PSSVTYEWIP----RAQNKHADRLANEAMDAGRD 143
>gi|321472557|gb|EFX83527.1| hypothetical protein DAPPUDRAFT_301828 [Daphnia pulex]
Length = 156
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V Y DGAC N GG GV + ++E ++ + A +
Sbjct: 14 VVTYIDGACPFNGYPHAKGGIGVWFGDDHPLNVSEPLDREGFPPTNQVAEIKACIRACQI 73
Query: 66 -----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V YTDS Y+ + WI KW NGW SD +K+ + + ++ KV
Sbjct: 74 LKDFGVRRVSFYTDSQYLIDSMTNWIYKWLNNGWLKSDGTPLKHKHYYQELLDLIDNFKV 133
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ I EN+ DR+A+ A +
Sbjct: 134 NWVHIPS----AENK-ADRLAKKGAEKY 156
>gi|297194680|ref|ZP_06912078.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152391|gb|EFH31713.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 423
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKA 59
RE DG GNPGP G+G ++ + TNN E +KA
Sbjct: 4 PREFVVEADGGSRGNPGPAGYGAVVLDPVSGETLAEAAEYIGVATNNVAEYKGLVAGLKA 63
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
AL V + DS V + S K L + +
Sbjct: 64 AHALDPEALVRVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAARVFPPAQ 112
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V WI + N+ DR+A A + K
Sbjct: 113 VTYEWIP----RERNKHADRLANEAMDAGKR 139
>gi|154270402|ref|XP_001536056.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409983|gb|EDN05371.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1585
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1238 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1297
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1298 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1354
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W GH G + NE+ DR+A+ A S
Sbjct: 1355 NLGLKWAPGHMGIEGNEEADRLAKRAVSS 1383
>gi|313239114|emb|CBY14091.1| unnamed protein product [Oikopleura dioica]
Length = 391
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 10 HAYTDGACSGNPGP-----GGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDGAC GN G GV K S E E + N AI
Sbjct: 224 VVYTDGACPGNQNKKGLRFSGSGVWWGPAKADSVPNSRFENEYSTNNFGEALAILHAVRH 283
Query: 64 ---KYPCKVLLYTDSSYVHKGFSQWIKKWQQN----GWKTSDKKTVKNIDLWMKFVEASA 116
K K+ + TDS + WI KW++ W DK + + +++ + +
Sbjct: 284 AKEKKFKKIEVRTDSKFCISALDVWIIKWKRFAVNGKWTKYDKSPIIHQEIFSEIDDIRR 343
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ V +KGH G NE+ D++A AA +
Sbjct: 344 KEVDVVFRHVKGHNGEIGNEQADKLAVKAAEEHRR 378
>gi|154277650|ref|XP_001539663.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413248|gb|EDN08631.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1411
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1100 RSQPSIDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1159
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1160 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1216
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1217 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1245
>gi|154282433|ref|XP_001542012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410192|gb|EDN05580.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1357
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1046 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1105
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1106 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRDSAAASSNWAYNRCHELLR---QH 1162
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1163 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1191
>gi|152975120|ref|YP_001374637.1| ribonuclease H [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152023872|gb|ABS21642.1| ribonuclease H [Bacillus cytotoxicus NVH 391-98]
Length = 132
Score = 70.3 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ + +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGIQQPVQLSIPLGSMSNHEAEYHALLIALKYCIKHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + + + +++ + W+
Sbjct: 62 SIVSFRTDSQLVERAIEKEYAKNKTYAP---------LLQEALTYIDKFELFFI--KWVP 110
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
+N+ D +AR A + + +
Sbjct: 111 S----SQNKVADELARKAILQNERR 131
>gi|303242032|ref|ZP_07328524.1| ribonuclease H [Acetivibrio cellulolyticus CD2]
gi|302590450|gb|EFL60206.1| ribonuclease H [Acetivibrio cellulolyticus CD2]
Length = 264
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ YTD + G + +L L +E +S K++ + +EL A IKAL Y
Sbjct: 116 IEVYTDASYDEKLQKGAYSILKKDLDGNYEEHQLSSEYKDSAS--IELQAVIKALE--LY 171
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + TDS YV KG S+W+ W+ N W T++ KNID+W++ + V+ ++
Sbjct: 172 CGDLRIVTDSQYVRKGISEWMVHWKLNDWCTANGTKAKNIDMWLRLEQLCEDRYVEFGYV 231
Query: 126 KGHAGNQENEKVDRIARN 143
K H + ENE D +AR
Sbjct: 232 KAHNDHFENEYCDLLARK 249
>gi|118083235|ref|XP_001232730.1| PREDICTED: similar to RNase H, putative [Gallus gallus]
Length = 539
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ GNP W + + E I E ++ EL A +T + +
Sbjct: 180 YTDGSSRGNPSR--WRAVAYHPSMEIIWFEEEDGQSSQWAELRAVWMVITQEPGNSALNI 237
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS V++G + T + + D+W+ A V Y + GH
Sbjct: 238 CTDSWAVYRGLT-LWIAQWATQDWTIHARPIWGNDMWVDIWNAVRHRTVRAYRVSGHQPL 296
Query: 132 Q--ENEKVDRIAR 142
Q N++ D +AR
Sbjct: 297 QSLGNDEADTLAR 309
>gi|154270335|ref|XP_001536023.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410037|gb|EDN05425.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 914
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 603 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 662
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 663 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 719
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 720 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 748
>gi|150020612|ref|YP_001305966.1| ribonuclease H [Thermosipho melanesiensis BI429]
gi|149793133|gb|ABR30581.1| ribonuclease H [Thermosipho melanesiensis BI429]
Length = 220
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTALK 64
+ + Y DG+ S +GV++ K EK + N E++ I AL+
Sbjct: 78 KCLEIYVDGSYSHEFKRASFGVVILSKNIEKYYMVINKFLKHRNVTGEILGVIYALSYAY 137
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y + KT K +E +
Sbjct: 138 ENGYGCVKLYYDYEGIEKWVVGEW---------KAKTELTKMYKEKVLEYGKYINIKFEK 188
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
++ H G++ NE+ D++A+ A + + +
Sbjct: 189 VRAHTGDKYNEQADKLAKYAIKTNSSNV 216
>gi|28897416|ref|NP_797021.1| ribonuclease H [Vibrio parahaemolyticus RIMD 2210633]
gi|260363524|ref|ZP_05776353.1| ribonuclease HI [Vibrio parahaemolyticus K5030]
gi|260876373|ref|ZP_05888728.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|260898644|ref|ZP_05907140.1| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
gi|28805628|dbj|BAC58905.1| putative ribonuclease HI [Vibrio parahaemolyticus RIMD 2210633]
gi|308086971|gb|EFO36666.1| ribonuclease HI [Vibrio parahaemolyticus Peru-466]
gi|308093049|gb|EFO42744.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|308112993|gb|EFO50533.1| ribonuclease HI [Vibrio parahaemolyticus K5030]
Length = 165
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 9 VHAYTDGACSGNP-----GPGGWGVLLRYKGKEKIISGGEKETTNNRMEL-MAAIKALTA 62
+ Y DG+ N G G V S + T + +
Sbjct: 18 LSIYCDGSAPDNQHGCLQGGVGIAVYDALGQCVYEYSSSVRRTGGVTSQRAELLALIIAL 77
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVD 121
L +++DS Y +GF++W+ W++N W+ S KK V N DLWM E A +V
Sbjct: 78 LVAGEGDNVFSDSQYCVRGFNEWLDSWKRNAWRNSSKKPVANQDLWMLIDELKAIRPRVS 137
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+ + GH+G + NE DR+AR AA
Sbjct: 138 VEHLAGHSGIKGNEHSDRLARQAAE 162
>gi|228990707|ref|ZP_04150672.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
gi|228996809|ref|ZP_04156443.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|229004485|ref|ZP_04162226.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228756770|gb|EEM06074.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228762870|gb|EEM11783.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|228769233|gb|EEM17831.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
Length = 128
Score = 70.3 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSLPLGIMSNHEAEYHALLVALKYCMEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ + ++++ +
Sbjct: 62 SIVSFRTDSQLVERAVEKEYAKNKTYAP---------LLEEALAYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
N +N+ D +AR A +
Sbjct: 109 --IPNSQNKVADELARKAILQ 127
>gi|154287968|ref|XP_001544779.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408420|gb|EDN03961.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 787
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 476 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 535
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 536 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 592
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 593 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 621
>gi|257471302|ref|ZP_05635301.1| ribonuclease H [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|311085986|gb|ADP66068.1| ribonuclease H [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086561|gb|ADP66642.1| ribonuclease H [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087676|gb|ADP67755.1| ribonuclease H [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 97
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 56/88 (63%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
L+ V +TDG+C GNPG GG+G +LRYK EKI++ G TTNNRMELMA I L L
Sbjct: 2 LKIVKMFTDGSCLGNPGAGGYGTILRYKKHEKILTSGFHLTTNNRMELMAVISGLEFLNQ 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNG 93
C V + TDS YV KG W+ W++
Sbjct: 62 SCHVEITTDSLYVKKGIIDWMPIWEKKN 89
>gi|158320317|ref|YP_001512824.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
gi|158140516|gb|ABW18828.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
Length = 134
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 21/151 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIK 58
MD ++E Y+DG GNPG G GV ++ + IS E TNN E A +
Sbjct: 1 MD---MKEAVMYSDGGSRGNPGIAGIGVSIQDKDGNIIREISQYIGEQTNNVAEYKALSR 57
Query: 59 ALTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L K+ Y D S+ + K + +K +++ + ++ M V+
Sbjct: 58 GLEVALDLGIEKITCYLD--------SELVVKQIKGEYKVKNERMIPMYNMVMPLVKEFK 109
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ H + N++ D++A A
Sbjct: 110 SFSIN------HVRRELNKRADQLANEAMDQ 134
>gi|154271959|ref|XP_001536832.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408819|gb|EDN04275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1338
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 1027 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 1086
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 1087 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1143
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1144 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1172
>gi|194016693|ref|ZP_03055306.1| ribonuclease HI [Bacillus pumilus ATCC 7061]
gi|194011299|gb|EDW20868.1| ribonuclease HI [Bacillus pumilus ATCC 7061]
Length = 131
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC-- 67
Y DGA +GNPGP G G+ ++Y GK + S + +N+ E A I+ +
Sbjct: 4 EIYIDGASAGNPGPSGIGIFIKYNGKAESFSIPLEPMSNHEAEFSALIEGMKICAEKGLR 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL-YWIK 126
V TDS V + + K + +E +Q + WI
Sbjct: 64 TVSFRTDSQVVDRAANAGF------------AKNPAFQHFIKEMIELQSQFDLFFIKWIP 111
Query: 127 GHAGNQENEKVDRIARNAA 145
+EN+ D++AR A
Sbjct: 112 S----KENQIADQLARKAI 126
>gi|307328674|ref|ZP_07607846.1| Phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
gi|306885623|gb|EFN16637.1| Phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
Length = 391
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 50/150 (33%), Gaps = 21/150 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KAL 60
R DG GNPGP G+G ++ ++ TNN E I +A
Sbjct: 3 RRFVVEADGGSRGNPGPAGYGAVVLDAETGEPLAEVAEYIGTATNNVAEYKGLIAGLRAA 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL +V + DS V + S K L + ++
Sbjct: 63 YALDPEAEVRVRMDSKLVIEQMSGRW-----------KIKHPDMRPLAAEAKAIMPPGQL 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
WI ++N+ DR+A A + K
Sbjct: 112 AYEWIP----REKNKHADRLANEAMDAGKR 137
>gi|301105994|ref|XP_002902080.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098700|gb|EEY56752.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 281
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKET-TNNRMELMAAI 57
D KH + A+ DG+ N + + + ++ TNNR E MAA+
Sbjct: 128 DPKHPDSMVAFCDGSALRNGQRDCDAAYARVFPHDQASNVVRTLNGPWATNNRAEYMAAL 187
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL + D S + + WI KWQ NGW T + VKN D+ + ++
Sbjct: 188 AALQWAR-------DEDPSMLINSMTNWIYKWQNNGWTTQNGTEVKNRDILGQLLDEQGN 240
Query: 118 HKVDLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKN 150
+V ++ H GN+ N+ D AR AA N
Sbjct: 241 REVIWRHVRAHTGNKDWESYWNDIADTKARQAAEKLAN 278
>gi|46190428|ref|ZP_00206465.1| COG0328: Ribonuclease HI [Bifidobacterium longum DJO10A]
gi|189440613|ref|YP_001955694.1| ribonuclease HI [Bifidobacterium longum DJO10A]
gi|312133917|ref|YP_004001256.1| rnha [Bifidobacterium longum subsp. longum BBMN68]
gi|322689887|ref|YP_004209621.1| ribonuclease H [Bifidobacterium longum subsp. infantis 157F]
gi|189429048|gb|ACD99196.1| Ribonuclease HI [Bifidobacterium longum DJO10A]
gi|291516433|emb|CBK70049.1| Ribonuclease HI [Bifidobacterium longum subsp. longum F8]
gi|311773211|gb|ADQ02699.1| RnhA [Bifidobacterium longum subsp. longum BBMN68]
gi|320461223|dbj|BAJ71843.1| ribonuclease H [Bifidobacterium longum subsp. infantis 157F]
Length = 278
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 24 GGWGVLLRY----------KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
GW +GG TN EL A ++AL A P +L+ +
Sbjct: 1 MGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVLEALRAHPGPEPLLIES 60
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGN 131
DS Y ++W+K W++NGWK S KK VKN +L +Q VD W+KGHAGN
Sbjct: 61 DSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQRPGPVDFRWVKGHAGN 120
Query: 132 QENEKVDRIARNAAVSFKN 150
+ NE VD +AR A ++
Sbjct: 121 EGNELVDELARTYAGDCRS 139
>gi|86357978|ref|YP_469870.1| ribonuclease H protein [Rhizobium etli CFN 42]
gi|86282080|gb|ABC91143.1| probable ribonuclease H protein [Rhizobium etli CFN 42]
Length = 165
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPC 67
+H + DG G GGW ++ + E S GG +++ NN MEL A ++A+ +
Sbjct: 12 LHVFVDGCYDPCSGHGGWAFVVYREAAEIASSFGGVRDSANNSMELTAVLQAVMWINSEA 71
Query: 68 K---VLLYTDSSYVHKGFSQWIKKWQQNGWKTS-------DKKTVKNIDLWMKFVEASAQ 117
+++DS Y KG + W+ NGWK S + ++ S
Sbjct: 72 TGEAATIWSDSIYAVKGCNDRRHIWKNNGWKKSGGNGNARSRTIANTELWKAVDLQLSQN 131
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + W KGH+G NE+ D +A +S +
Sbjct: 132 ALVTIAWCKGHSGIAGNERADELADGGRLSAR 163
>gi|271968069|ref|YP_003342265.1| fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
gi|270511244|gb|ACZ89522.1| Fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
Length = 452
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLR---YKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ DG GNPGP G+G +++ + TNN E I L +
Sbjct: 1 MTSFVIEADGGSRGNPGPAGYGAVVKDAADGQVLVETAEAIGAQTNNVAEYRGLIAGLQS 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + K + + K L ++ + + +V
Sbjct: 61 LLALAGDGAVVEVRMDSKLVIEQMAGRW-------KIKNEGLRPLALEAGALARRLRVTW 113
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
WI ++N+ DR+A A +
Sbjct: 114 QWIP----REKNKDADRLANEAMDAAAK 137
>gi|157692703|ref|YP_001487165.1| ribonuclease H [Bacillus pumilus SAFR-032]
gi|157681461|gb|ABV62605.1| possible ribonuclease H [Bacillus pumilus SAFR-032]
Length = 131
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC-- 67
Y DGA +GNPGP G G+ ++Y GK + S +N+ E A I+ +
Sbjct: 4 EIYIDGASAGNPGPSGIGIFIKYNGKAESFSIPLGSMSNHEAEFSALIEGMKICVEKGLR 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL-YWIK 126
V TDS V + + K + +E + + WI
Sbjct: 64 TVSFRTDSQVVDRAANAGF------------AKNPAFQHFIKEMIELQSNFDLFFIKWIP 111
Query: 127 GHAGNQENEKVDRIARNAA 145
+EN+ D++AR A
Sbjct: 112 S----KENQVADQLARKAI 126
>gi|199597793|ref|ZP_03211219.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
[Lactobacillus rhamnosus HN001]
gi|229551421|ref|ZP_04440146.1| possible ribonuclease H [Lactobacillus rhamnosus LMS2-1]
gi|258509632|ref|YP_003172383.1| ribonuclease HI [Lactobacillus rhamnosus GG]
gi|258540833|ref|YP_003175332.1| ribonuclease HI [Lactobacillus rhamnosus Lc 705]
gi|199591229|gb|EDY99309.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
[Lactobacillus rhamnosus HN001]
gi|229315212|gb|EEN81185.1| possible ribonuclease H [Lactobacillus rhamnosus LMS2-1]
gi|257149559|emb|CAR88532.1| Ribonuclease HI [Lactobacillus rhamnosus GG]
gi|257152509|emb|CAR91481.1| Ribonuclease HI [Lactobacillus rhamnosus Lc 705]
gi|259650898|dbj|BAI43060.1| ribonuclease H [Lactobacillus rhamnosus GG]
Length = 160
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 8 EVHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG G W LL Y EK++S G+ TNN ME+MA I
Sbjct: 4 SIVLYTDGGNRNTGNHAGGSVRPTDKSAWAALLIYGEHEKMLSEGDYGRTNNYMEIMAVI 63
Query: 58 KALT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + + +Y+DS+YV Q Q + K VKN +LW +
Sbjct: 64 QGLKAIKRTDIPIDVYSDSAYVINTMQQRWWVKWQQNGWRNHGKPVKNAELWQALLHQMN 123
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ +V + +KGHA N+ N +VD ++
Sbjct: 124 RFDQVTFHKVKGHATNRNNNRVDEALNQTMDRLDDR 159
>gi|328477900|gb|EGF47849.1| ribonuclease HI [Lactobacillus rhamnosus MTCC 5462]
Length = 160
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 8 EVHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG G W LL Y EK++S G+ TNN ME+MA I
Sbjct: 4 SIVLYTDGGNRNTGNHAGGSVRPTDKSAWAALLIYGEHEKMLSEGDYGRTNNYMEIMAVI 63
Query: 58 KALT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + + +Y+DS+YV Q Q + K VKN +LW +
Sbjct: 64 QGLKAIKRTDIPIDVYSDSAYVINTMQQRWWVKWQQNGWRNHGKPVKNAELWQALLHQMD 123
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ +V + +KGHA N+ N +VD ++
Sbjct: 124 RFDQVTFHKVKGHATNRNNNRVDEALNQTMDRLDDR 159
>gi|269125916|ref|YP_003299286.1| phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
gi|268310874|gb|ACY97248.1| Phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
Length = 378
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI--- 57
+ R++ DG GNPGP G+G L+R ++ TNN E I
Sbjct: 7 RPPRKLIVEADGGSRGNPGPAGYGALVRDALTGEVLAEVAEAIGHATNNVAEYRGLIAGL 66
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+A + +V + DS V + S + A+A
Sbjct: 67 RAAAEVDPAARVEVRMDSKLVVEQMSGRW----------KIRHPDLMPLALQARDAAAAL 116
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V W+ N DR+A A +
Sbjct: 117 GAVSYTWVP----RDRNAHADRLANEAMDAA 143
>gi|29832420|ref|NP_827054.1| bifunctional RNase H/acid phosphatase [Streptomyces avermitilis
MA-4680]
gi|29609539|dbj|BAC73589.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
Length = 438
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 49/150 (32%), Gaps = 21/150 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKAL 60
RE DG GNPGP G+G ++ + TNN E +KA
Sbjct: 3 REFIVEADGGSRGNPGPAGYGAVVIDAATGETLAETAEYIGVATNNVAEYRGLLAGLKAA 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL ++ + DS V + S K L + +V
Sbjct: 63 RALDPAARIRVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAREAAAVFPPSQV 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
WI + N+ DR+A A + K
Sbjct: 112 TYEWIP----RERNKHADRLANEAMDAGKR 137
>gi|320459221|dbj|BAJ69842.1| ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 278
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 24 GGWGVLLRY----------KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
GW +GG TN EL A ++AL A P +L+ +
Sbjct: 1 MGWAWADHEPNTGGKPGHKHDDHGYDAGGATNGTNQIGELCAVLEALRAHPGPEPLLIES 60
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--VDLYWIKGHAGN 131
DS Y ++W+K W++NGW+ S KK VKN +L +Q VD W+KGHAGN
Sbjct: 61 DSQYAINCSTKWVKGWKKNGWRNSQKKPVKNKELIQAIDREISQRPGPVDFRWVKGHAGN 120
Query: 132 QENEKVDRIARNAAVSFKN 150
+ NE VD +AR A ++
Sbjct: 121 EGNELVDELARTYAGDCRS 139
>gi|331236443|ref|XP_003330880.1| hypothetical protein PGTG_12417 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309870|gb|EFP86461.1| hypothetical protein PGTG_12417 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1101
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 2/139 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + +TDG+ PG G + + ++ T E L
Sbjct: 793 QTLVIFTDGSWL--PGKGAGAAAVTHPSGRGCVATLHPANTITNFEAELIGVRLAINMAQ 850
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ T++SY + ++I F + + L+W
Sbjct: 851 EILEADTENSYTDVAIFSDNQSALMLSSNPISLSPGQSIYTDNFFRLKLLRRTIRLFWCP 910
Query: 127 GHAGNQENEKVDRIARNAA 145
GH G NE+ D +A+ AA
Sbjct: 911 GHEGITANERADSLAKKAA 929
>gi|225847920|ref|YP_002728083.1| ribonuclease HI [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644273|gb|ACN99323.1| ribonuclease HI [Sulfurihydrogenibium azorense Az-Fu1]
Length = 106
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
P + LYTDS+YV G + W++KW +N WKTS K V+N DLW + E +H+V +WI
Sbjct: 19 PYDIDLYTDSNYVINGINSWLEKWIKNNWKTSSGKPVENQDLWQRLYELLKKHRVKAHWI 78
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
KGH+G+ ENE D+IA+ A+ K++
Sbjct: 79 KGHSGHPENEYCDKIAKQEALKVKDE 104
>gi|316965396|gb|EFV50118.1| ubiquitin-conjugating enzyme E22 [Trichinella spiralis]
Length = 248
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 12 YTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDGAC N G GV I + TNNR E+ A +A+ K
Sbjct: 117 YTDGACVNNGKLGARAGIGVYWGENDPRNISEPLKGLQTNNRAEIEACSRAIEQAKRDGI 176
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L +W+ KW++N W D + VKN++ M + + V ++ H
Sbjct: 177 THL-------EIRTDKWMPKWRKNNWIKPDGEMVKNLEDLMYLDKLANSISVKWTYVVAH 229
Query: 129 AGNQENEKVDRIARNAAVS 147
G + NEK D +A++
Sbjct: 230 NGTEGNEKADMLAKSGLQK 248
>gi|294629067|ref|ZP_06707627.1| phosphoglycerate mutase [Streptomyces sp. e14]
gi|292832400|gb|EFF90749.1| phosphoglycerate mutase [Streptomyces sp. e14]
Length = 401
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKAL 60
RE DG GNPGP G+G ++ + G L+A ++A
Sbjct: 37 REFVVEADGGSRGNPGPAGYGAVVLDPATGEALAEAAEYLGTVTNNVAEYRGLLAGLRAA 96
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL +V + DS V + S K L +V
Sbjct: 97 HALDPEARVHVRMDSKLVVEQMSGRW-----------KIKHPDLKPLATMAARVFPPDRV 145
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
WI + N+ DR+A A +
Sbjct: 146 TYEWIP----RERNKHADRLANEAMDA 168
>gi|50547429|ref|XP_501184.1| YALI0B21494p [Yarrowia lipolytica]
gi|49647050|emb|CAG83437.1| YALI0B21494p [Yarrowia lipolytica]
Length = 483
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 17/157 (10%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK---- 58
K + +TDGAC G G GV + + E + T R EL A +
Sbjct: 303 KKRESTMTVHTDGACQGE--KAGAGVWFQDGSEFNFSGPVEGKQTRERAELYAVFQALRL 360
Query: 59 -ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS-- 115
+ + + TDS Y ++ KW++NG+ S V+N DL + +
Sbjct: 361 IFTHRVYDAYRWEVVTDSQYAIDCITKKGDKWEKNGYVDSKGCPVENRDLVVIIRYFARE 420
Query: 116 ------AQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
H++ H+ N NE +R+A
Sbjct: 421 SEKLSGCYHQIIFKHT--HSRNHGNESANRLATKGID 455
>gi|154269728|ref|XP_001535793.1| hypothetical protein HCAG_09281 [Ajellomyces capsulatus NAm1]
gi|150410047|gb|EDN05435.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 360
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 46 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 105
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 106 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 162
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 163 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 191
>gi|154274369|ref|XP_001538036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415644|gb|EDN10997.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1174
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 863 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 922
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 923 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 979
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 980 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1008
>gi|154281239|ref|XP_001541432.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411611|gb|EDN06999.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1183
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 872 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 931
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 932 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 988
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 989 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1017
>gi|90961392|ref|YP_535308.1| ribonuclease HI [Lactobacillus salivarius UCC118]
gi|301300061|ref|ZP_07206280.1| ribonuclease HI [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90820586|gb|ABD99225.1| Ribonuclease HI [Lactobacillus salivarius UCC118]
gi|300214259|gb|ADJ78675.1| Ribonuclease HI [Lactobacillus salivarius CECT 5713]
gi|300852324|gb|EFK79989.1| ribonuclease HI [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 219
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 2 DSKHLREVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRM 51
+ + V YTDG + W L++Y+G + GE +TNNRM
Sbjct: 56 NRRKSYSVIVYTDGGSRNHGNKKGEHVKKNDKAAWAYLIKYQGSIISDTDGEYGSTNNRM 115
Query: 52 ELMAA----IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
E+MA + K+L+ DS YV ++ + + + T
Sbjct: 116 EIMALKKALLDLKQRELQNEKILVVLDSKYVLDAITKRWLQSWEKNGWKTSAGTGVKNKE 175
Query: 108 WMKFVEA--SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ +D W KGHA ++ N VD +
Sbjct: 176 LWMEISRLLPEFPNLDYQWTKGHANDEGNNLVDELLNKTMDQM 218
>gi|320011079|gb|ADW05929.1| Phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
Length = 429
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 13/148 (8%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALTA 62
R + DG GNPGP G+G ++ + TNN E I L A
Sbjct: 4 PRRLVVEADGGSRGNPGPAGYGAVVLDPLDTATLAEAAEYIGVATNNVAEYRGLIAGLKA 63
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
++ + T + S+ + + W K L + V
Sbjct: 64 VR---DLFPDTPVQVRVRMDSKLVVEQMSGRW---KIKHPDMKPLAEEAARILPASSVTY 117
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
WI EN+ DR+A A + +
Sbjct: 118 EWIP----RAENKHADRLANEAMDAGRR 141
>gi|154273178|ref|XP_001537441.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415953|gb|EDN11297.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 529
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 218 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 277
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 278 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 334
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 335 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 363
>gi|227891640|ref|ZP_04009445.1| ribonuclease HI [Lactobacillus salivarius ATCC 11741]
gi|227866556|gb|EEJ73977.1| ribonuclease HI [Lactobacillus salivarius ATCC 11741]
Length = 226
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 2 DSKHLREVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRM 51
+ + V YTDG + W L++Y+G + GE +TNNRM
Sbjct: 63 NRRKSYSVIVYTDGGSRNHGNKKGEHVKKNDKAAWAYLIKYQGSIISDTDGEYGSTNNRM 122
Query: 52 ELMAA----IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
E+MA + K+L+ DS YV ++ + + + T
Sbjct: 123 EIMALKKALLDLKQRELQNEKILVVLDSKYVLDAITKRWLQSWEKNGWKTSAGTGVKNKE 182
Query: 108 WMKFVEA--SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ +D W KGHA ++ N VD +
Sbjct: 183 LWMEISRLLPEFPNLDYQWTKGHANDEGNNLVDELLNKTMDQM 225
>gi|292654895|ref|YP_003534792.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|291370792|gb|ADE03019.1| ribonuclease H-like protein [Haloferax volcanii DS2]
Length = 197
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCK 68
H Y DGA GNPGP G + S ETTNNR E A ++AL+ +
Sbjct: 70 HVYFDGASRGNPGPAAIGWAIVTSDGIVAEGSKRIGETTNNRAEYEALVEALSVAEE--- 126
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
Y +G SQ I K + W T+D + + + A W H
Sbjct: 127 ---YGYDEVDVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFE------RWSLEH 177
Query: 129 AGNQENEKVDRIARNA 144
+ N++ D +A A
Sbjct: 178 VPREINDRADSLANEA 193
>gi|123965464|ref|YP_001010545.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9515]
gi|123199830|gb|ABM71438.1| possible ribonuclease HI [Prochlorococcus marinus str. MIT 9515]
Length = 239
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAI-- 57
M+SK + A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI
Sbjct: 1 MNSKTNIAIEAATDGACSGNPGPGGWGGLIIFIDNSEIEIGGSEQNTTNNRMELTAAIKT 60
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + L TDS YV +G+++WI W++NGWKTS K+V+N+DLW K E
Sbjct: 61 LEKLKNYQLKENFKLRTDSKYVIEGYTKWISNWKKNGWKTSAGKSVQNLDLWQKIDELRI 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
Q +++ ++KGH+G+++NE+VD IA
Sbjct: 121 Q-GLEMEFVKGHSGDKQNERVDLIAT 145
>gi|154271392|ref|XP_001536549.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409219|gb|EDN04669.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1276
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 929 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 988
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 989 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 1045
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 1046 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 1074
>gi|322711739|gb|EFZ03312.1| ribonuclease H1, putative [Metarhizium anisopliae ARSEF 23]
Length = 331
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 25/165 (15%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGVLLRYKG-----------KEKIISGGEKETT 47
D + + Y DGAC N GW + + + G T
Sbjct: 156 DPQQM---LIYADGACLNNGQANPKAGWAFVFKPTVGQTPGHVSARLENIGPFGDPSNQT 212
Query: 48 NNRMELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD--KKT 101
+NR EL A + AL + ++ TDS YV +G + W + W +NGW+TS +
Sbjct: 213 SNRAELRAVLAALRFRHWEGEGFKTIVFATDSEYVAEGATHWARTWVRNGWRTSTGAVRN 272
Query: 102 VKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
++ + VE V++ + + NE+ D A+ AA
Sbjct: 273 KDLWEMLLGEVERWNSWGVEIQFWR--IPRALNERADTAAKQAAE 315
>gi|300712184|ref|YP_003737998.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|299125867|gb|ADJ16206.1| ribonuclease H [Halalkalicoccus jeotgali B3]
Length = 197
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 43/140 (30%), Gaps = 17/140 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIK--ALTALK 64
VH Y DG GNPGP G +L + ETTNNR E A + +
Sbjct: 68 RVHLYFDGGSRGNPGPAAIGWVLVSSDGIVAEGNERIGETTNNRAEYEALARGLEVAREY 127
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V + DS V K + + + V W
Sbjct: 128 GFDAVEVRGDSQLVVKQVRGEW--------------DANDPGMRERRVRVHELLSAFPEW 173
Query: 125 IKGHAGNQENEKVDRIARNA 144
H + NE+ D + A
Sbjct: 174 SIAHVPREINERADELVNEA 193
>gi|149236513|ref|XP_001524134.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452510|gb|EDK46766.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 331
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 29/175 (16%)
Query: 3 SKHLREVH-AYTDGACSGNPGP----GGWGVLLRYKGKEK-------IISGGEKETTNNR 50
S + V YTDGAC GN G+GV + TN R
Sbjct: 142 SNTMPNVTRIYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQR 201
Query: 51 MELMAAIKALTALK-------YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK 103
EL A + AL + Y C+ + +DS Y K W KW +NGW+ K+ V
Sbjct: 202 AELHAVLHALRNIDKELDKAIYKCRYAICSDSIYALKCIKIWSAKWLKNGWQNVAKRPVA 261
Query: 104 NIDLWMKFVE----------ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
N D+ + V + + ++GH+GN+ N+ D +A A
Sbjct: 262 NADIIKEAVRLTAKIDDVYGQLGWNSLQFIHVRGHSGNKGNDIADNLASIGADEM 316
>gi|24214672|ref|NP_712153.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
gi|24195657|gb|AAN49171.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
Length = 129
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKY 65
+ Y DGA GNPGP G++ ++ +E IS ETTNN E A K +
Sbjct: 2 ITIYCDGASKGNPGPSSIGIVAYIHEKEEFRISERIGETTNNVAEWSALKKGIEECISRK 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ Y DS V K + K N + + L +
Sbjct: 62 FDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQIT------------ 109
Query: 126 KGHAGNQENEKVDRIARNA 144
H ++N D++A A
Sbjct: 110 --HVPREKNSVADKLANEA 126
>gi|154273424|ref|XP_001537564.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150416076|gb|EDN11420.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1153
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 842 RSQPSTDLYVFSDGSERNLDNNRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 901
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 902 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 958
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 959 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 987
>gi|23099909|ref|NP_693375.1| hypothetical protein OB2454 [Oceanobacillus iheyensis HTE831]
gi|22778140|dbj|BAC14410.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 130
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDGA GNPG GG G+ ++ + S +N+ E A I L K
Sbjct: 2 IEVYTDGATLGNPGIGGAGIYIKDGKQSYQYSIPLPSMSNHEAEFHAIIHGLQVCKEH-- 59
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + S+ + G + + E + WI
Sbjct: 60 ---FPNEILSFRTDSKVAADLIEKGHTKNIVFQSLLHTINQVSSEFPFFF---IKWIP-- 111
Query: 129 AGNQENEKVDRIARNAAV 146
++N D++A+ A
Sbjct: 112 --EKKNYHADKLAKKAIQ 127
>gi|269791797|ref|YP_003316701.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099432|gb|ACZ18419.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 132
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 19/141 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIK--ALTALKYPC 67
Y DGA GNPGP G G LL + + E TNN E A I +
Sbjct: 5 YFDGASRGNPGPAGAGALLEDEDGRVVWEHREYLGRRTNNEAEYWALIALLEEARSRGID 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+++ DS V ++ +L + E S V WI
Sbjct: 65 RLIAMGDSQLVVSQVTRKW-----------KINMPHLRELARRVWELSEGMDVSFRWIP- 112
Query: 128 HAGNQENEKVDRIARNAAVSF 148
+EN + DR++ A
Sbjct: 113 ---REENRRADRLSNQAIDMA 130
>gi|308125990|ref|ZP_05778515.2| ribonuclease HI [Vibrio parahaemolyticus K5030]
gi|308115294|gb|EFO52834.1| ribonuclease HI [Vibrio parahaemolyticus K5030]
Length = 88
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 56/75 (74%)
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
TDS YV +G +QWI W++ GWKT+DKK VKN DLW + +A+H+VD +W+KGHAG++
Sbjct: 3 TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQVDWHWVKGHAGHR 62
Query: 133 ENEKVDRIARNAAVS 147
ENE D +AR AA +
Sbjct: 63 ENEICDELARTAAEN 77
>gi|119492692|ref|XP_001263665.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
gi|119411825|gb|EAW21768.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
Length = 321
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 23/164 (14%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKI-----------ISGGEKETTNNR 50
+ E+ YTDGAC GN G GV+ R + ++ +G + T+NR
Sbjct: 145 NSNEMLIYTDGACLGNGQANPRAGCGVVFREERPGRMGHFAFALELQGPTGHPRPQTSNR 204
Query: 51 MELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID 106
EL A I AL + K+++ TDS YV +G + WIK W +NGW+TS + VKN D
Sbjct: 205 AELRAVIAALQFRIWPGEGWTKIVIATDSEYVVEGATSWIKGWVRNGWRTSRGRPVKNKD 264
Query: 107 LWMK---FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
LW + EA+A+ K L + + + N + D A+ AA
Sbjct: 265 LWKCLLGWCEAAAKEKTKLEFWR--IPREWNAEADGWAKLAADE 306
>gi|154279334|ref|XP_001540480.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412423|gb|EDN07810.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 666
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 355 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 414
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 415 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 471
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 472 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 500
>gi|218673153|ref|ZP_03522822.1| putative ribonuclease HI [Rhizobium etli GR56]
Length = 177
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+H + DG GGW + R + GG +E+ NN MEL A +KA +
Sbjct: 24 LHIFVDGCYEPGSQHGGWAFVAYRDAVEIASGCGGVQESANNSMELTAVLKAAIWINSEA 83
Query: 68 K---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-------TVKNIDLWMKFVEASAQ 117
+++DS Y KG + W+ NGWK S ++ S
Sbjct: 84 AGEAATIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKAVDLQLSQN 143
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + W KGH+G NE+ D +A +S +
Sbjct: 144 ALVTVTWCKGHSGIAGNERADALADKGRLSIR 175
>gi|116496073|ref|YP_807807.1| RNase H [Lactobacillus casei ATCC 334]
gi|227532944|ref|ZP_03962993.1| possible ribonuclease H [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239630479|ref|ZP_04673510.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
containing protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067630|ref|YP_003789653.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
[Lactobacillus casei str. Zhang]
gi|116106223|gb|ABJ71365.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
[Lactobacillus casei ATCC 334]
gi|227189345|gb|EEI69412.1| possible ribonuclease H [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239526762|gb|EEQ65763.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
containing protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300440037|gb|ADK19803.1| RNase H with double-stranded RNA/RNA-DNA hybrid binding domain
[Lactobacillus casei str. Zhang]
Length = 160
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 8 EVHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG G W LL Y EK++S G+ TNN ME+MA I
Sbjct: 4 SIVLYTDGGNRNTGNQAGGSVRPTDKSAWAALLIYGDHEKMLSDGDYGRTNNYMEIMAVI 63
Query: 58 KALTA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L A + V +Y+DS+YV Q Q + K VKN +LW +
Sbjct: 64 QGLKALKRTDIPVDVYSDSAYVINTMQQRWWVKWQQNNWRNHGKPVKNAELWQALLHQVN 123
Query: 117 QHK-VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ + + + +KGHA N+ N +VD + +
Sbjct: 124 RFETITFHKVKGHATNRNNNRVDAALNQTMDQLDDHV 160
>gi|332637681|ref|ZP_08416544.1| RNase HI [Weissella cibaria KACC 11862]
Length = 233
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 16/156 (10%)
Query: 11 AYTDGACSGNPGPGG----------WGVLLRYKG----KEKIISGGEKETTNNRMELMAA 56
+TDG G W + + SG TNN ME++
Sbjct: 78 IFTDGGSRNTGNVAGGHVRPTDKAAWAIAIYRGDDMQTPVFTDSGAFFGRTNNEMEILGL 137
Query: 57 IKALTALKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM-KFVEA 114
I AL + V + +DS YV + W+ WQ NGW+ + + +
Sbjct: 138 INALLQMAKVSEPVTIVSDSKYVLDTVTDWMYNWQSNGWRKASGEIANLTAWQQVYELVQ 197
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
Q ++ W+KGHA + N +VD++ +A K
Sbjct: 198 QVQDRLAFIWVKGHATSAGNIRVDQLLNDAMDQLKK 233
>gi|291545952|emb|CBL19060.1| Ribonuclease HI [Ruminococcus sp. SR1/5]
Length = 102
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 8 EVHAYTDGACSGNP-GPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIKALT 61
+V YTDGA GNP GPGG+G +L+Y + E+ +S G K+TTNNRMELMAAI AL
Sbjct: 2 QVKIYTDGAARGNPDGPGGYGAVLQYIDTKGQLHERELSRGYKKTTNNRMELMAAIVALE 61
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV 102
AL PC+V LY+DS Y+ F+Q K +
Sbjct: 62 ALNRPCQVDLYSDSKYLVDAFNQHWIDSWLKKNWKRGKTKM 102
>gi|291302271|ref|YP_003513549.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
Length = 137
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 42/147 (28%), Gaps = 18/147 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT--A 62
+V DG GNPGP G+G ++ + G TNN E I LT
Sbjct: 5 DKVIVEADGGSRGNPGPAGYGAVVLDETGQELMDRQGFLGIATNNVAEYSGLIAGLTAAR 64
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
V + DS V + + + V
Sbjct: 65 ELGAANVAVRMDSKLVVEQMNGNW----------KVRHPGLRPLAAEAAALVRQFDSVTF 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
WI +N + D +A A K
Sbjct: 115 TWIP----RADNTRADALANAAMDDAK 137
>gi|300087256|ref|YP_003757778.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526989|gb|ADJ25457.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 133
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 14/141 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTAL 63
++++ A+TDGA GNPG GV+++ E K IS TNN+ E A I AL
Sbjct: 1 MKQLIAHTDGASRGNPGAAALGVIIKSGQGEVVKEISLCLGRLTNNQAEYRAVIAALEES 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
L ++ +Q K KV
Sbjct: 61 GRQGATHLRINAD--------SELVVKQLNGIYRVKNPGLAPLALRVKELEKRFEKVIYC 112
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+ + N + D +A A
Sbjct: 113 HVP----RERNREADALANRA 129
>gi|145223479|ref|YP_001134157.1| bifunctional RNase H/acid phosphatase [Mycobacterium gilvum
PYR-GCK]
gi|315443840|ref|YP_004076719.1| fructose-2,6-bisphosphatase [Mycobacterium sp. Spyr1]
gi|145215965|gb|ABP45369.1| Phosphoglycerate mutase [Mycobacterium gilvum PYR-GCK]
gi|315262143|gb|ADT98884.1| fructose-2,6-bisphosphatase [Mycobacterium sp. Spyr1]
Length = 356
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG---GEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ +E +++ TNN E I L +
Sbjct: 1 MK-VIVECDGGSRGNPGPAGYGAVVWSADRESVLAEARSAIGTATNNVAEYRGLIAGLES 59
Query: 63 LKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + D + Q G + + + +H +
Sbjct: 60 AAQTGATEVEVRMD---------SKLIVEQMAGRWRVKHPDLAALHRQAADLARRFEH-I 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI ++N DR+A A +
Sbjct: 110 TYSWIP----REQNSYADRLANEAMDAA 133
>gi|56963779|ref|YP_175510.1| ribonuclease HI [Bacillus clausii KSM-K16]
gi|56910022|dbj|BAD64549.1| ribonuclease HI [Bacillus clausii KSM-K16]
Length = 133
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+H YTDGA +GNPGP G G++ G+ + + TN+ E A L K
Sbjct: 2 IHVYTDGASAGNPGPSGAGLVFIKDGEAQEFRFHLGDKTNHEAEFAAVDIALELCLQKEW 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V + TDS V + K + L + + + W+
Sbjct: 62 QQVSVRTDSKLVSDSIEKAHVKTKAYAGY-----------LCSILDKIAQLELFFIMWVP 110
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
++N+K D +AR A K
Sbjct: 111 S----KQNKKADELARLAIREPKR 130
>gi|256788082|ref|ZP_05526513.1| bifunctional RNase H/acid phosphatase [Streptomyces lividans TK24]
Length = 582
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 46/151 (30%), Gaps = 21/151 (13%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA--- 56
+ RE DG GNPGP G+G ++ + TNN E
Sbjct: 6 PRPAREFVVEADGGSRGNPGPAGYGAVVLDPVTGEALVEAAEYLGVVTNNVAEYRGLLAG 65
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++A L V + DS V + S K L +
Sbjct: 66 LRAAAELDPDATVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAARVFP 114
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V WI N+ DR+A A +
Sbjct: 115 PGRVTYEWIP----RASNKHADRLANEAMDA 141
>gi|21220768|ref|NP_626547.1| bifunctional RNase H/acid phosphatase [Streptomyces coelicolor
A3(2)]
gi|7619754|emb|CAB88177.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Streptomyces coelicolor A3(2)]
Length = 497
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 46/151 (30%), Gaps = 21/151 (13%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA--- 56
+ RE DG GNPGP G+G ++ + TNN E
Sbjct: 6 PRPAREFVVEADGGSRGNPGPAGYGAVVLDPVTGEALVEAAEYLGVVTNNVAEYRGLLAG 65
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++A L V + DS V + S K L +
Sbjct: 66 LRAAAELDPDATVHVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAARVFP 114
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V WI N+ DR+A A +
Sbjct: 115 PGRVTYEWIP----RASNKHADRLANEAMDA 141
>gi|326804604|ref|YP_004327475.1| ribonuclease H [Salmonella phage Vi01]
gi|301795254|emb|CBW37972.1| ribonuclease H [Salmonella phage Vi01]
Length = 175
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 9 VHAYTDGACSG-NPGPGGWGVLLRYKGKEKI---ISGGEKETTNNRMELMAAIKALTALK 64
+ YTDGA S GW + E+ +TNN EL+ I AL L
Sbjct: 2 IEIYTDGASSPQKTQAAGWAFAISPITGEQWKVFYGYLPPPSTNNIAELLGVINALKILW 61
Query: 65 YPCKVLLYT--------DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
DS YV +W +KW+ G + + ++L+ + + +
Sbjct: 62 KFSNCGERCIPPARIISDSQYVINSVLEWRRKWEYEGMPPKNTEL--LLELFNYYDKVCS 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+++L W+KGHAGN NE D+ + A
Sbjct: 120 ICELELKWVKGHAGNIGNEIADQWSVRA 147
>gi|298711927|emb|CBJ48614.1| ribonuclease H [Ectocarpus siliculosus]
Length = 523
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTALKYP 66
+ DG C GNPGP G G ++ ++++ SG + TNN E + I L A
Sbjct: 47 TLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKL 106
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ V KG S + + W+ S K V E QH++ W
Sbjct: 107 SI------TQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQAS---EVVKQHQLKCTW-- 155
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H + N + D +A A S
Sbjct: 156 HHVPRKLNVRADLLANIAMDS 176
>gi|218679821|ref|ZP_03527718.1| putative ribonuclease HI [Rhizobium etli CIAT 894]
Length = 177
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 7 REVHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
R + + DG G GGW + R + GG +++ NN EL+A +KA+ +
Sbjct: 22 RGLQVFVDGCYEPVSGRGGWAFVAYRDVAEIASGFGGVEDSANNATELIAVLKAVMWINS 81
Query: 66 PCK---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID-------LWMKFVEAS 115
K ++++DS Y KG + W+ NGWK S ++ S
Sbjct: 82 EAKGEAAIIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARSRTIANAELWKTVDLQLS 141
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V + W KGH+G NE D +A +S
Sbjct: 142 FNALVTIAWCKGHSGIAGNECADTLADRGRLSL 174
>gi|317157858|ref|XP_001826621.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1012
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ N G V L K G E+E+T EL AL L+ +
Sbjct: 717 IAVYTDGSGL-NGRVGASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMALHRLRRETR 775
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
F Q ++ + Q++V ++WI H
Sbjct: 776 ---------PATVFVDSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAH 826
Query: 129 AGNQENEKVDRIARNAAV 146
G NE D AR A
Sbjct: 827 IGVPGNEAADEAAREGAT 844
>gi|83775366|dbj|BAE65488.1| unnamed protein product [Aspergillus oryzae]
Length = 1187
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ N G V L K G E+E+T EL AL L+ +
Sbjct: 892 IAVYTDGSGL-NGRVGASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMALHRLRRETR 950
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
F Q ++ + Q++V ++WI H
Sbjct: 951 ---------PATVFVDSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAH 1001
Query: 129 AGNQENEKVDRIARNAAV 146
G NE D AR A
Sbjct: 1002 IGVPGNEAADEAAREGAT 1019
>gi|154249370|ref|YP_001410195.1| ribonuclease H [Fervidobacterium nodosum Rt17-B1]
gi|154153306|gb|ABS60538.1| ribonuclease H [Fervidobacterium nodosum Rt17-B1]
Length = 754
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 3 SKHLRE------VHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMA 55
S+ +++ V Y DG+ + G G V+++ +EKI + + ++
Sbjct: 594 SRCMKKTLENECVKIYIDGSYDESTKKIGAGFVVVKESNEEKIETYWRGFSNPEHVKHRN 653
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+ A + + + + + G ++ K +
Sbjct: 654 VAGEIYAALLAFEYAKNENLKCIEINYDYEGIEKWALGLWKTNTSLTKLYKEKYDYYS-- 711
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ +K H G + NE D +A+ A K
Sbjct: 712 TFFRIKFNKVKAHTGEKYNEIADNLAKKAVNEEK 745
>gi|228984776|ref|ZP_04144948.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229155264|ref|ZP_04283375.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|228628189|gb|EEK84905.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|228774974|gb|EEM23368.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 128
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCMEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|313127214|ref|YP_004037484.1| ribonuclease hi [Halogeometricum borinquense DSM 11551]
gi|312293579|gb|ADQ68039.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
Length = 197
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCK 68
H Y DGA GNPGP G + S ETTNNR E A I+AL A
Sbjct: 70 HVYFDGASRGNPGPAAIGWAIVNSEGIVGEGSETIGETTNNRAEYEALIRALEAADEYGF 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+G S+ I K + T++ + + + +E W H
Sbjct: 130 ------DEVDVRGDSELIVKQVHGEYDTNNPELRERRVRVRELLERFD------RWSLEH 177
Query: 129 AGNQENEKVDRIARNA 144
+ N++ D +A A
Sbjct: 178 VPREINDRADSLANEA 193
>gi|227872103|ref|ZP_03990476.1| ribonuclease [Oribacterium sinus F0268]
gi|227842052|gb|EEJ52309.1| ribonuclease [Oribacterium sinus F0268]
Length = 243
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AY DG+ + G G+GV+ K + + + + L ALK
Sbjct: 107 IAYVDGSFEKDSGVYGYGVVFIEKNGNIEEYFDSGREESYQSMRNVSGEILGALKATSLA 166
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ SS Q I W + WK + +K I+ K +E + K+ + ++ H+
Sbjct: 167 VEKGYSSIAIFHDYQGIASWAKGEWKCNKEK---TIEYREKMLEFQKKLKISFHKVQAHS 223
Query: 130 GNQENEKVDRIARNA 144
G+ NE+ D +A+ A
Sbjct: 224 GDHFNERADALAKQA 238
>gi|329768575|ref|ZP_08260062.1| hypothetical protein HMPREF0428_01759 [Gemella haemolysans M341]
gi|328836616|gb|EGF86275.1| hypothetical protein HMPREF0428_01759 [Gemella haemolysans M341]
Length = 204
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+AY DG+ G G GV++ K+ E + NR + L+
Sbjct: 63 VYAYIDGSFDRVSGIYGSGVVIVDGDKK-----YEYKHAGNREDYAQLHNVAGELEAAKF 117
Query: 69 VLLY-TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V+ Y D + + D + + KV+ +K
Sbjct: 118 VMWYAVDKKIKEITLFYDYQGIEAWAVGDWKANLPYTQDYVKFYSKVKMAVKVNFVKVKA 177
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
H G + NE VD++A+ A FK +
Sbjct: 178 HTGIELNEVVDKLAKEAIEQFKKE 201
>gi|42780788|ref|NP_978035.1| ribonuclease H [Bacillus cereus ATCC 10987]
gi|42736708|gb|AAS40643.1| RNase H [Bacillus cereus ATCC 10987]
Length = 128
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSFPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|30019744|ref|NP_831375.1| ribonuclease H [Bacillus cereus ATCC 14579]
gi|206970760|ref|ZP_03231712.1| RNase H [Bacillus cereus AH1134]
gi|218233881|ref|YP_002366379.1| ribonuclease H [Bacillus cereus B4264]
gi|228952076|ref|ZP_04114171.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957973|ref|ZP_04119710.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043450|ref|ZP_04191160.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|229069249|ref|ZP_04202539.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|229078879|ref|ZP_04211431.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|229109152|ref|ZP_04238751.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|229127023|ref|ZP_04256022.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|229144309|ref|ZP_04272715.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|296502279|ref|YP_003663979.1| ribonuclease H [Bacillus thuringiensis BMB171]
gi|29895289|gb|AAP08576.1| Ribonuclease HI [Bacillus cereus ATCC 14579]
gi|206734396|gb|EDZ51566.1| RNase H [Bacillus cereus AH1134]
gi|218161838|gb|ACK61830.1| ribonuclease H [Bacillus cereus B4264]
gi|228639096|gb|EEK95520.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|228656376|gb|EEL12215.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|228674162|gb|EEL29407.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|228704293|gb|EEL56727.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|228713736|gb|EEL65621.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|228725828|gb|EEL77075.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|228801680|gb|EEM48560.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807608|gb|EEM54132.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|296323331|gb|ADH06259.1| ribonuclease H [Bacillus thuringiensis BMB171]
Length = 128
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSVPLGTMSNHEAEYRALLLALKYCIEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + +D +++++ +
Sbjct: 62 STVSFRTDSQLVERAVEKEYAKNKIFAP---------LLDEALQYIKNFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|160933085|ref|ZP_02080474.1| hypothetical protein CLOLEP_01928 [Clostridium leptum DSM 753]
gi|156868159|gb|EDO61531.1| hypothetical protein CLOLEP_01928 [Clostridium leptum DSM 753]
Length = 204
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AY DG+ G G ++ Y+G+ IS + + + +
Sbjct: 70 VAYVDGSYHAGTGEFACGAVIFYQGEAFEISQKF--NDPDLAAMRNVAGEIKGSEAAIAF 127
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L + + G ++K+ ++ +S + ++ +KGH+
Sbjct: 128 CLEREIQSLEIHHDYEGIAKWCTGEWKANKE--ATKTYRQYYLASSQRLQITFVKVKGHS 185
Query: 130 GNQENEKVDRIARNA 144
G+Q N++ DR+A++A
Sbjct: 186 GDQFNDRADRLAKDA 200
>gi|315039090|ref|YP_004032658.1| ribonuclease H-related protein [Lactobacillus amylovorus GRL 1112]
gi|312277223|gb|ADQ59863.1| ribonuclease H-related protein [Lactobacillus amylovorus GRL 1112]
Length = 218
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 5/139 (3%)
Query: 8 EVHAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+V +TDG+ G GWG +YK ++I + +
Sbjct: 79 QVIVFTDGSFKNGTGKQAAGWGYYGKYKKNDEINPLEDHGNVKGKGAKQV---NGEITAA 135
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V D + K + D + + +Q +V +W
Sbjct: 136 LNAVQAAIDLGLQKVDLYCDFWNLMLWDCGFYESKKEVSKDFVKQMKDLESQIEVHFHWS 195
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G NEK D +A+
Sbjct: 196 PGHTGIPYNEKADELAKRG 214
>gi|229178104|ref|ZP_04305475.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
gi|229189778|ref|ZP_04316791.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|228593692|gb|EEK51498.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|228605234|gb|EEK62684.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
Length = 128
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSVPLGTMSNHEAEYRALLLALKYCIEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + +D +++++ +
Sbjct: 62 STVSFRTDSQLVERALEKEYAKNKIFAP---------LLDEALQYIKNFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|228920407|ref|ZP_04083752.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839037|gb|EEM84333.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 128
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ +++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKNFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|325957513|ref|YP_004292925.1| ribonuclease H-like protein [Lactobacillus acidophilus 30SC]
gi|325334078|gb|ADZ07986.1| ribonuclease H-related protein [Lactobacillus acidophilus 30SC]
Length = 218
Score = 68.0 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 5/139 (3%)
Query: 8 EVHAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+V +TDG+ G GWG +YK ++I + +
Sbjct: 79 QVIVFTDGSFKNGTGKQAAGWGYYGKYKKNDEINPLEDHGNVKGKGAKQV---NGEINAA 135
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V D + K + D + + +Q +V +W
Sbjct: 136 LNAVQAAIDLGLQKVDLYCDFWNLMLWDCGFYESKKEVSKDFVKQMKDLESQIEVHFHWS 195
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G NEK D +A+
Sbjct: 196 PGHTGIPYNEKADELAKRG 214
>gi|229096181|ref|ZP_04227154.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
gi|229102292|ref|ZP_04233001.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|229115136|ref|ZP_04244546.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|228668276|gb|EEL23708.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|228681193|gb|EEL35361.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|228687141|gb|EEL41046.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
Length = 128
Score = 68.0 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGIQPPVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|154271895|ref|XP_001536800.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408787|gb|EDN04243.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 68.0 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 122 RSQPSTDLYVFSDGSEQNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 181
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 182 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHEVLR---QH 238
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 239 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 267
>gi|2114394|gb|AAC47537.1| ribonuclease H1 [Trypanosoma brucei]
gi|261329676|emb|CBH12658.1| ribonuclease H1 [Trypanosoma brucei gambiense DAL972]
Length = 301
Score = 68.0 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 63/177 (35%), Gaps = 38/177 (21%)
Query: 9 VHAYTDGACSGNP------GPGGWGVLLRYKGKEKIISGGEKETTN---NRMELMAAIKA 59
V Y DGAC N P G + R EL A I
Sbjct: 122 VVVYVDGACRNNGSRSRERRPRAGFGGFYGDGDSRNFKFPLPAHEPQTNQRAELSALIHV 181
Query: 60 LT---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L + +Y+DS Y G + ++ +W++NG+KT+ V NIDLW +F +
Sbjct: 182 LRVALDSHPCYNLCVYSDSKYTVMGVNSYLHRWERNGFKTAGGGDVANIDLWSQFTKLRN 241
Query: 117 QH--------------------------KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+H + L + GHAG NE DR+A A S
Sbjct: 242 RHLSRCAERFTMEFRFKASLAAIAARAVALQLKHVPGHAGVYGNEMADRLAVEACES 298
>gi|229016980|ref|ZP_04173900.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
gi|229023161|ref|ZP_04179672.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|228738086|gb|EEL88571.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|228744251|gb|EEL94333.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
Length = 128
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVHLSLPLGTMSNHEAEYHALLAALKYCTEHDY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|218463303|ref|ZP_03503394.1| putative ribonuclease HI [Rhizobium etli Kim 5]
Length = 161
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+H + DG GGW + R + GG +E+ NN MEL A +KA +
Sbjct: 8 LHIFVDGCYEPGSQHGGWAFVTYRDAVEIASGFGGVQESANNSMELTAVLKAAIWINSEA 67
Query: 68 K---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-------TVKNIDLWMKFVEASAQ 117
+++DS Y KG + W+ NGWK S ++ S
Sbjct: 68 AGEAATIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKAVDLQLSQN 127
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + W KGH+G NE+ D +A +S +
Sbjct: 128 ALVTVTWCKGHSGIAGNERADALADKGRLSIR 159
>gi|75759688|ref|ZP_00739771.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896627|ref|YP_002445038.1| RNase H [Bacillus cereus G9842]
gi|228900277|ref|ZP_04064507.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|228938808|ref|ZP_04101408.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228964678|ref|ZP_04125785.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228971689|ref|ZP_04132310.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978298|ref|ZP_04138675.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|74492835|gb|EAO55968.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218541202|gb|ACK93596.1| RNase H [Bacillus cereus G9842]
gi|228781315|gb|EEM29516.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|228787779|gb|EEM35737.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228794928|gb|EEM42427.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228820657|gb|EEM66682.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228859312|gb|EEN03742.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|326939312|gb|AEA15208.1| ribonuclease H [Bacillus thuringiensis serovar chinensis CT-43]
Length = 128
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSLPLGTMSNHEAEYRALLLALKYCIEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + +D +++++ +
Sbjct: 62 STVSFRTDSQLVERAVEKEYAKNKIFAP---------LLDEALQYIKNFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|291451062|ref|ZP_06590452.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354011|gb|EFE80913.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 412
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 21/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KA 59
+R+ DG GNPGP G+G ++ +G TNN E I +A
Sbjct: 44 MRQFAVEADGGSRGNPGPAGYGAVVVDAATGETLTETAGFLGTATNNTAEYRGLIAGLRA 103
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L +V + DS V + + + + + + +
Sbjct: 104 ARDLDPEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAAEAAGILAPD-----------Q 152
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V WI EN++ DR+A A +
Sbjct: 153 VTYVWIP----RAENQQADRLANEAMDA 176
>gi|239979184|ref|ZP_04701708.1| bifunctional RNase H/acid phosphatase [Streptomyces albus J1074]
Length = 369
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 21/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KA 59
+R+ DG GNPGP G+G ++ +G TNN E I +A
Sbjct: 1 MRQFAVEADGGSRGNPGPAGYGAVVVDAATGETLTETAGFLGTATNNTAEYRGLIAGLRA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L +V + DS V + + + + + + +
Sbjct: 61 ARDLDPEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAAEAAGILAPD-----------Q 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V WI EN++ DR+A A +
Sbjct: 110 VTYVWIP----RAENQQADRLANEAMDA 133
>gi|308474914|ref|XP_003099677.1| hypothetical protein CRE_22985 [Caenorhabditis remanei]
gi|308266532|gb|EFP10485.1| hypothetical protein CRE_22985 [Caenorhabditis remanei]
Length = 192
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 14/143 (9%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK---ALTAL 63
YTDG+C G+GV SG ++ + A +
Sbjct: 33 IVYTDGSCINQGKDSAKAGFGVCWDENYHPNNYSGKVHGLQDSGHAELCAAEHAIKQAVD 92
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L DS V + + + + ++ + +
Sbjct: 93 GEYRSITLRADSELVGHVVRNPEAFSKSSHPDYYNVISSISLVKSQI--------NIKVE 144
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
++K H G NEK D +A+ A
Sbjct: 145 YVKAHNGIPGNEKADELAKLGAR 167
>gi|312140237|ref|YP_004007573.1| rnase h domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
gi|311889576|emb|CBH48893.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
Length = 377
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 43/145 (29%), Gaps = 19/145 (13%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIK--ALT 61
V DG GNPGP G+G ++ + + TNN E I A
Sbjct: 4 DRVVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAA 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+V + DS V + S K A +VD
Sbjct: 64 RDLGAHEVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLAQRARELADGFARVD 113
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
WI EN DR+A A
Sbjct: 114 FTWIP----RAENSHADRLANEAMD 134
>gi|325677016|ref|ZP_08156687.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
gi|325552178|gb|EGD21869.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
Length = 377
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 43/145 (29%), Gaps = 19/145 (13%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIK--ALT 61
V DG GNPGP G+G ++ + + TNN E I A
Sbjct: 4 DRVVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAA 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+V + DS V + S K A +VD
Sbjct: 64 RDLGAHEVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLAQRARELADGFARVD 113
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
WI EN DR+A A
Sbjct: 114 FTWIP----RAENSHADRLANEAMD 134
>gi|312869039|ref|ZP_07729216.1| ribonuclease HI [Lactobacillus oris PB013-T2-3]
gi|311095465|gb|EFQ53732.1| ribonuclease HI [Lactobacillus oris PB013-T2-3]
Length = 242
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 8 EVHAYTDGACSG----------NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG N W L+ +G + + GE TNN+MEL A +
Sbjct: 84 TILLYTDGGSRNHGNQLGQHVRNDDKAAWAYLIERRGHQYTGTDGEFGATNNKMELTALL 143
Query: 58 KALT----ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFV 112
AL + DS YV ++ WQ+ GWKTS K V N LW + +
Sbjct: 144 TALQTIKVHHWQDELISATLDSHYVLDPITKGWLYGWQRRGWKTSTGKPVANKALWQEML 203
Query: 113 EASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ Q + W KGHA N N VD +
Sbjct: 204 KILPQFTHLHFKWTKGHADNLGNNIVDELLNTTMDKM 240
>gi|33860760|ref|NP_892321.1| ribonuclease HI [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633702|emb|CAE18659.1| possible ribonuclease HI [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 240
Score = 67.6 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 95/146 (65%), Gaps = 5/146 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI-- 57
M+S+ + A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI
Sbjct: 1 MNSQQNIAIEAATDGACSGNPGPGGWGGLIIFNDNSELEIGGSEENTTNNRMELTAAIKT 60
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + L TDS YV +G+++WI W++NGWKTS K+V+N+DLW K
Sbjct: 61 LEKLKDFQLKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSAGKSVQNLDLWQKIDNLRI 120
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
+ V + ++KGH+G+++NE+VD IA
Sbjct: 121 KGLV-MEFVKGHSGDKQNERVDLIAT 145
>gi|47566073|ref|ZP_00237111.1| RNase H [Bacillus cereus G9241]
gi|47556990|gb|EAL15320.1| RNase H [Bacillus cereus G9241]
Length = 128
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCMEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKTFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|30261693|ref|NP_844070.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47526908|ref|YP_018257.1| ribonuclease H [Bacillus anthracis str. 'Ames Ancestor']
gi|49184522|ref|YP_027774.1| ribonuclease H [Bacillus anthracis str. Sterne]
gi|49477289|ref|YP_035811.1| ribonuclease H [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143763|ref|YP_083064.1| ribonuclease H [Bacillus cereus E33L]
gi|65318963|ref|ZP_00391922.1| COG0328: Ribonuclease HI [Bacillus anthracis str. A2012]
gi|118477133|ref|YP_894284.1| ribonuclease H [Bacillus thuringiensis str. Al Hakam]
gi|165869270|ref|ZP_02213929.1| RNase H [Bacillus anthracis str. A0488]
gi|167633323|ref|ZP_02391648.1| RNase H [Bacillus anthracis str. A0442]
gi|167639074|ref|ZP_02397347.1| RNase H [Bacillus anthracis str. A0193]
gi|170686199|ref|ZP_02877421.1| RNase H [Bacillus anthracis str. A0465]
gi|170706468|ref|ZP_02896928.1| RNase H [Bacillus anthracis str. A0389]
gi|177650395|ref|ZP_02933362.1| RNase H [Bacillus anthracis str. A0174]
gi|190566405|ref|ZP_03019323.1| RNase H [Bacillus anthracis Tsiankovskii-I]
gi|196033486|ref|ZP_03100898.1| RNase H [Bacillus cereus W]
gi|196046566|ref|ZP_03113790.1| RNase H [Bacillus cereus 03BB108]
gi|206974875|ref|ZP_03235790.1| RNase H [Bacillus cereus H3081.97]
gi|217959173|ref|YP_002337721.1| ribonuclease H [Bacillus cereus AH187]
gi|218902808|ref|YP_002450642.1| RNase H [Bacillus cereus AH820]
gi|222095315|ref|YP_002529375.1| ribonuclease h [Bacillus cereus Q1]
gi|225863552|ref|YP_002748930.1| RNase H [Bacillus cereus 03BB102]
gi|227815554|ref|YP_002815563.1| RNase H [Bacillus anthracis str. CDC 684]
gi|228907332|ref|ZP_04071190.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|228914272|ref|ZP_04077887.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926728|ref|ZP_04089796.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932978|ref|ZP_04095841.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945296|ref|ZP_04107651.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229029371|ref|ZP_04185456.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|229090653|ref|ZP_04221886.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|229121245|ref|ZP_04250476.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|229132508|ref|ZP_04261358.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|229138389|ref|ZP_04266980.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|229172337|ref|ZP_04299897.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|229183884|ref|ZP_04311100.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|229195904|ref|ZP_04322658.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|229601488|ref|YP_002866097.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|254683182|ref|ZP_05147043.1| ribonuclease H [Bacillus anthracis str. CNEVA-9066]
gi|254723771|ref|ZP_05185557.1| ribonuclease H [Bacillus anthracis str. A1055]
gi|254734534|ref|ZP_05192246.1| ribonuclease H [Bacillus anthracis str. Western North America
USA6153]
gi|254740943|ref|ZP_05198631.1| ribonuclease H [Bacillus anthracis str. Kruger B]
gi|254755185|ref|ZP_05207219.1| ribonuclease H [Bacillus anthracis str. Vollum]
gi|254759721|ref|ZP_05211745.1| ribonuclease H [Bacillus anthracis str. Australia 94]
gi|300117384|ref|ZP_07055174.1| ribonuclease H [Bacillus cereus SJ1]
gi|30255921|gb|AAP25556.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47502056|gb|AAT30732.1| RNase H [Bacillus anthracis str. 'Ames Ancestor']
gi|49178449|gb|AAT53825.1| RNase H [Bacillus anthracis str. Sterne]
gi|49328845|gb|AAT59491.1| ribonuclease HI [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51977232|gb|AAU18782.1| ribonuclease HI [Bacillus cereus E33L]
gi|118416358|gb|ABK84777.1| RNase HI [Bacillus thuringiensis str. Al Hakam]
gi|164714710|gb|EDR20228.1| RNase H [Bacillus anthracis str. A0488]
gi|167512864|gb|EDR88237.1| RNase H [Bacillus anthracis str. A0193]
gi|167531361|gb|EDR94039.1| RNase H [Bacillus anthracis str. A0442]
gi|170128566|gb|EDS97433.1| RNase H [Bacillus anthracis str. A0389]
gi|170669896|gb|EDT20637.1| RNase H [Bacillus anthracis str. A0465]
gi|172083539|gb|EDT68599.1| RNase H [Bacillus anthracis str. A0174]
gi|190562540|gb|EDV16507.1| RNase H [Bacillus anthracis Tsiankovskii-I]
gi|195993920|gb|EDX57876.1| RNase H [Bacillus cereus W]
gi|196022499|gb|EDX61182.1| RNase H [Bacillus cereus 03BB108]
gi|206746894|gb|EDZ58286.1| RNase H [Bacillus cereus H3081.97]
gi|217065502|gb|ACJ79752.1| RNase H [Bacillus cereus AH187]
gi|218537064|gb|ACK89462.1| RNase H [Bacillus cereus AH820]
gi|221239373|gb|ACM12083.1| ribonuclease HI [Bacillus cereus Q1]
gi|225787336|gb|ACO27553.1| ribonuclease H [Bacillus cereus 03BB102]
gi|227006694|gb|ACP16437.1| ribonuclease H [Bacillus anthracis str. CDC 684]
gi|228587546|gb|EEK45610.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|228599536|gb|EEK57140.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|228611133|gb|EEK68395.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|228645060|gb|EEL01301.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|228650945|gb|EEL06930.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|228662090|gb|EEL17699.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|228692595|gb|EEL46321.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|228731931|gb|EEL82828.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|228814268|gb|EEM60534.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826579|gb|EEM72350.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832841|gb|EEM78410.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845266|gb|EEM90302.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228852193|gb|EEM96989.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|229265896|gb|ACQ47533.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|298725219|gb|EFI65871.1| ribonuclease H [Bacillus cereus SJ1]
gi|324325713|gb|ADY20973.1| ribonuclease H [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 128
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|120404586|ref|YP_954415.1| bifunctional RNase H/acid phosphatase [Mycobacterium vanbaalenii
PYR-1]
gi|119957404|gb|ABM14409.1| Phosphoglycerate mutase [Mycobacterium vanbaalenii PYR-1]
Length = 369
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 46/148 (31%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
+R V DG GNPGP G+G ++ + S TNN E I L A
Sbjct: 1 MR-VVVEADGGSRGNPGPAGYGAVVVSADRVSVLAETSSAIGTATNNVAEYRGLIAGLEA 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + S + +V
Sbjct: 60 AAELGATEVEVLMDSKLVVEQMSGRWRVR----------HPSLAPLHQQARDLERRFQRV 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
W+ +N + DR+A A +
Sbjct: 110 SYRWVP----RAQNSRADRLANEAMDAA 133
>gi|242825438|ref|XP_002488440.1| reverse transcriptase [C. elegans], putative [Talaromyces
stipitatus ATCC 10500]
gi|218712258|gb|EED11684.1| reverse transcriptase [C. elegans], putative [Talaromyces
stipitatus ATCC 10500]
Length = 1129
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 15/150 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V L K + E L +++
Sbjct: 802 TIQFFTDGSGFDNG--IGAAVYLSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 859
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 860 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 912
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+ GH G NEK D++A+ AAV +
Sbjct: 913 LQWVPGHEGVPGNEKADQLAKLAAVEATRR 942
>gi|116328421|ref|YP_798141.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116331150|ref|YP_800868.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116121165|gb|ABJ79208.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116124839|gb|ABJ76110.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 129
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIK--ALTALKY 65
+ + DGA GNPGP GV+ KE+ S ETTNN E + K +
Sbjct: 2 ISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRRK 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ Y DS V K S K N + + L +
Sbjct: 62 FDTIHAYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLLSSLQNFQIT------------ 109
Query: 126 KGHAGNQENEKVDRIARNA 144
H ++N D++A A
Sbjct: 110 --HVPREKNSVADKLANEA 126
>gi|308173990|ref|YP_003920695.1| hypothetical protein BAMF_2099 [Bacillus amyloliquefaciens DSM 7]
gi|307606854|emb|CBI43225.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328912145|gb|AEB63741.1| hypothetical protein LL3_02204 [Bacillus amyloliquefaciens LL3]
Length = 131
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ Y DGA +GNPGP G G+ +++ GK + S + +N E +A I+ +
Sbjct: 1 MMPAEIYVDGASAGNPGPSGIGIFIKHDGKTESFSIPIGDHSNQEAEFLALIEGMKLCA- 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
S + S +++ + ++ + WI
Sbjct: 60 -----ARGYESVSFRTDSDIVERAADLEAVKNKTFQPFVDEIIRLKAGFPLFF---IKWI 111
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
G ++N+ D++A+ A K
Sbjct: 112 PG----RQNQTADQLAKKAIRLNK 131
>gi|323339305|ref|ZP_08079594.1| ribonuclease HI [Lactobacillus ruminis ATCC 25644]
gi|323093258|gb|EFZ35841.1| ribonuclease HI [Lactobacillus ruminis ATCC 25644]
Length = 226
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 50/155 (32%), Gaps = 16/155 (10%)
Query: 8 EVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
E+ YTDG + W L +E SG E TNNRME+MA
Sbjct: 70 EIVIYTDGGSRNHGNRLGQHVKSNDKAAWAFLAVKGEREVAKSGSEYGATNNRMEIMAFR 129
Query: 58 KALTALKYP----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKT--SDKKTVKNIDLWMKF 111
AL L Y ++L DS YV ++ S +
Sbjct: 130 NALMWLDYYRLNDKRLLFVLDSKYVLDAVTKRWLFSWAKKGWKTASGEPVKNRELWEEVL 189
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
W KGHA N N KVDR+
Sbjct: 190 ELLKKFKNAKYAWTKGHADNYGNNKVDRLLNEEMD 224
>gi|301053232|ref|YP_003791443.1| ribonuclease H [Bacillus anthracis CI]
gi|300375401|gb|ADK04305.1| ribonuclease H [Bacillus cereus biovar anthracis str. CI]
Length = 128
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLTALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|150390743|ref|YP_001320792.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
gi|149950605|gb|ABR49133.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
Length = 135
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
YTDG GNPG G G+ ++ + + IS + TNN E A +AL
Sbjct: 7 IIYTDGGSRGNPGEAGIGITIQDQEGNEVRAISQYIGDQTNNVSEYKALSRALEIALDMG 66
Query: 68 --KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V Y DS V K + +K +++ + ++ M V+ ++
Sbjct: 67 IKRVTCYLDSELVVKQV--------KGQYKVKNERMIPMYNMVMPLVKKFESFAIE---- 114
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H ++N++ D +A A
Sbjct: 115 --HVRREQNKRADELANIAMD 133
>gi|311895809|dbj|BAJ28217.1| putative ribonuclease H/acid phosphatase [Kitasatospora setae
KM-6054]
Length = 384
Score = 67.6 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 15/140 (10%)
Query: 14 DGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG GNPGP G+G ++R + TNN E I L A +
Sbjct: 11 DGGSRGNPGPAGYGAVVRDADTGQVLAEAAEYIGHATNNVAEYRGLIAGLRAAR-----D 65
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L D+ + S+ + + W+ + V WI
Sbjct: 66 LDPDARVAVRMDSKLVVEQMSGRWQVKHPGMRPLAAEARGIL---PAGNVTYDWIP---- 118
Query: 131 NQENEKVDRIARNAAVSFKN 150
+ N+ DR+A A + +
Sbjct: 119 RERNKDADRLANEAMDAGQR 138
>gi|300767916|ref|ZP_07077825.1| ribonuclease H [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|300494526|gb|EFK29685.1| ribonuclease H [Lactobacillus plantarum subsp. plantarum ATCC
14917]
Length = 298
Score = 67.2 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W + + S GE TNNRME+MA ++
Sbjct: 73 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 132
Query: 59 ALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
AL L+ +L DS YV ++ + + N +LW +
Sbjct: 133 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNGPLVNAELWREVDRL 192
Query: 115 SAQHK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 193 LPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQM 227
>gi|154272642|ref|XP_001537173.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415685|gb|EDN11029.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 360
Score = 67.2 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 6/147 (4%)
Query: 4 KHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 51 QPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGACRA 110
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ DSS + + + + + QH V
Sbjct: 111 LECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGGAAASSNWAYNRCHELLR---QHNV 167
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
L W GH G + NE+ DR+A+ A S
Sbjct: 168 GLKWAPGHMGIEGNEEADRLAKRAVSS 194
>gi|229084695|ref|ZP_04216962.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
gi|228698651|gb|EEL51369.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
Length = 128
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSLPLGIMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ + +++ +
Sbjct: 62 NTVSFRTDSQLVERAVEKEYAKNKTYAP---------LLEEALAYIKKFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|32812829|emb|CAD67562.1| polymerase [Simian foamy virus-orangutan]
Length = 1145
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ NP P G GV+ E S T E+ A
Sbjct: 597 YTDGSAIKNPNPTKTHSAGMGVVQGKFNPEFQVVNQWSIPLGNHTAQLAEVAAVEFACKQ 656
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K++ W + + +
Sbjct: 657 ALKITGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHVSKWKSIADCLSLKTGI 716
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + + N D++A
Sbjct: 717 TIKHEKGHQPSHTSVHTEGNALADKLATQG 746
>gi|28379120|ref|NP_786012.1| ribonuclease H (putative) [Lactobacillus plantarum WCFS1]
gi|28271958|emb|CAD64863.1| ribonuclease H (putative) [Lactobacillus plantarum WCFS1]
Length = 298
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W + + S GE TNNRME+MA ++
Sbjct: 73 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 132
Query: 59 ALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
AL L+ +L DS YV ++ + + N +LW +
Sbjct: 133 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNGPLVNAELWREVDRL 192
Query: 115 SAQHK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 193 LPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQM 227
>gi|55379866|ref|YP_137716.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|55232591|gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
Length = 198
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIKALT--ALK 64
VHAY DGA GNPGP G +L G TNN+ E A I+A+
Sbjct: 69 RVHAYFDGASRGNPGPASVGYVLVNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDY 128
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V + DS + K + W T+D + ++ + + +++
Sbjct: 129 GFDDVHIRGDSELIVKQV--------RGEWDTNDPELREHRVRVRELLTDFDDWQIE--- 177
Query: 125 IKGHAGNQENEKVDRIARNA 144
H + N++ D +A +A
Sbjct: 178 ---HVPREINDRADELANDA 194
>gi|321446744|gb|EFX60940.1| hypothetical protein DAPPUDRAFT_340962 [Daphnia pulex]
Length = 159
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 9 VHAYTDGACSGN---PGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKA 59
V Y DGAC GN GG GV + TN E+ AAI+A
Sbjct: 13 VIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHINPTNQVAEIKAAIRA 72
Query: 60 LT--ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+V+++TDS Y+ + WI WQ NGW+T + V + L+ + + +
Sbjct: 73 CELLRNYGVERVVIFTDSQYLIDSITDWIFTWQSNGWRTYQGQPVVHKALYEELLFLTRG 132
Query: 118 HK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V+ + H N+ D +A+ A S+
Sbjct: 133 FDCVEWSHVPSH----YNK-ADSLAKIGAESY 159
>gi|167771495|ref|ZP_02443548.1| hypothetical protein ANACOL_02865 [Anaerotruncus colihominis DSM
17241]
gi|167666135|gb|EDS10265.1| hypothetical protein ANACOL_02865 [Anaerotruncus colihominis DSM
17241]
Length = 118
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 37 KIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWK 95
+SGGEK+TTNNRMEL AAI+AL LK PC+V L +DS Y+ ++ W++ W+
Sbjct: 3 IELSGGEKDTTNNRMELTAAIRALQKLKVPCEVTLTSDSKYLVDSVTKGWVNNWKRKSWR 62
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
SD N+DLW + + +H W+ GHAG+ ENE+ DRIA
Sbjct: 63 KSDGAPALNVDLWEELLAELERHTAKFVWVHGHAGHPENERCDRIAVAEINKL 115
>gi|308181314|ref|YP_003925442.1| ribonuclease H (putative) [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308046805|gb|ADN99348.1| ribonuclease H (putative) [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 298
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W + + S GE TNNRME+MA ++
Sbjct: 73 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 132
Query: 59 ALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
AL L+ +L DS YV ++ + + N +LW +
Sbjct: 133 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNGPLVNAELWREVDRL 192
Query: 115 SAQHK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 193 LPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQM 227
>gi|229490280|ref|ZP_04384122.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
gi|229322812|gb|EEN88591.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
Length = 376
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA 62
L +V DG GNPGP G+G ++ + TNN E I L A
Sbjct: 2 TLSQVIVEADGGSRGNPGPAGYGAVVFDASRSVLAERKESIGIATNNVAEYRGLIAGLIA 61
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V + DS V + S K A+ +V
Sbjct: 62 AGELGASTVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLQRRAAELATQFSRV 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI EN DR+A A +
Sbjct: 112 TYTWIP----RGENSHADRLANEAMDAA 135
>gi|321472337|gb|EFX83307.1| hypothetical protein DAPPUDRAFT_223388 [Daphnia pulex]
Length = 163
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 9 VHAYTDGACSGN---PGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKA 59
V Y DGAC GN GG GV + TN E+ AAI+A
Sbjct: 17 VIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHTNPTNQVAEIKAAIRA 76
Query: 60 LT--ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+V+++TDS Y+ + WI WQ NGW+T + V + L+ + + +
Sbjct: 77 CELLRNYGVERVVIFTDSQYLIDSITDWIFTWQSNGWRTYQGQPVVHKALYEELLFWTRD 136
Query: 118 HK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V+ + H N+ D +A+ A S+
Sbjct: 137 FDCVEWSHVPSH----YNK-ADSLAKIGAESY 163
>gi|310831474|ref|YP_003970117.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
gi|309386658|gb|ADO67518.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
Length = 164
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 19/150 (12%)
Query: 12 YTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRME----LMAAIKALTALK 64
+TDG+ GN GG+GV + + I E + TNN E +K + +K
Sbjct: 11 FTDGSSKGNQFKNPTGGFGVYFPHHPELNISKKLEGKVTNNIAELSAVYYGILKLIRKVK 70
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+++ +DS Y+ ++W K W++N WK +D ++N L K ++
Sbjct: 71 VNKPIIIVSDSKYIIDSITKWAKGWEKNNWKKADGTPIQNEILIKKIYYLVNNLNINFQH 130
Query: 125 IKGHAGNQ------------ENEKVDRIAR 142
+ H N+K D++A
Sbjct: 131 QRAHKSPPKDKNSSEYFFWDGNDKADKLAN 160
>gi|297161032|gb|ADI10744.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
Length = 421
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
R DG GNPGP G+G ++ + TNN E I L A
Sbjct: 3 RRFVVEADGGSRGNPGPAGYGAVVLDPDTGETLAEAAEYIGTATNNVAEYKGLIAGLRAA 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + + S+ + + W K L + E +V
Sbjct: 63 R---ALDPEAGVQVQVRMDSKLVVEQMSGRW---KVKHPGMRPLAAEAREIFPPGQVSYE 116
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
WI + N+ DR+A A +
Sbjct: 117 WIP----RERNKHADRLANEAMDA 136
>gi|191639555|ref|YP_001988721.1| Ribonuclease HI [Lactobacillus casei BL23]
gi|190713857|emb|CAQ67863.1| Ribonuclease HI [Lactobacillus casei BL23]
gi|327383660|gb|AEA55136.1| Ribonuclease [Lactobacillus casei LC2W]
gi|327386852|gb|AEA58326.1| Ribonuclease [Lactobacillus casei BD-II]
Length = 160
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 8 EVHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG G W LL Y EK++S G+ TNN ME+MA I
Sbjct: 4 SIVLYTDGGNRNTGNQAGGSVRPTDKSAWAALLIYGDHEKMLSDGDYGRTNNYMEIMAVI 63
Query: 58 KALTA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L A + V +Y+DS+YV Q Q + K VKN +LW +
Sbjct: 64 QGLKALKRTDIPVDVYSDSAYVINTMQQRWWVKWQQNNWRNHGKPVKNAELWQALLHQVN 123
Query: 117 QHK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + +KGHA N+ N +VD
Sbjct: 124 RFETITFHKVKGHATNRNNNRVDAALNQTMDRL 156
>gi|196038938|ref|ZP_03106245.1| ribonuclease H [Bacillus cereus NVH0597-99]
gi|196030083|gb|EDX68683.1| ribonuclease H [Bacillus cereus NVH0597-99]
Length = 128
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV + +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFITGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKMFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|296270282|ref|YP_003652914.1| phosphoglycerate mutase [Thermobispora bispora DSM 43833]
gi|296093069|gb|ADG89021.1| Phosphoglycerate mutase [Thermobispora bispora DSM 43833]
Length = 440
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA----LKYPC 67
DGA GNPGP G+G +++ + TNN E I L A
Sbjct: 14 DGAARGNPGPAGYGAVVKDAEGRVLAETAEAIGVATNNVAEYRGLIAGLRALLGLGAEGE 73
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + DS V + S K L + + + +V W+
Sbjct: 74 PVEVRMDSRLVIEQMSGRW-----------KVKHEGLRPLAAEAAGLARRFRVTWTWVP- 121
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
++N DR+A A + +
Sbjct: 122 ---REQNGHADRLANEAVDAAER 141
>gi|72391644|ref|XP_846116.1| ribonuclease H1 [Trypanosoma brucei TREU927]
gi|62175628|gb|AAX69760.1| ribonuclease H1 [Trypanosoma brucei]
gi|70802652|gb|AAZ12557.1| ribonuclease H1 [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 301
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 62/177 (35%), Gaps = 38/177 (21%)
Query: 9 VHAYTDGACSGNP------GPGGWGVLLRYKGKEKIISGGEKETTN---NRMELMAAIKA 59
V Y DGAC N P G + R EL A I
Sbjct: 122 VVVYVDGACRNNGSRSRERRPRAGFGGFYGDGDSRNFKFPLPAHEPQTNQRAELSALIHV 181
Query: 60 LT---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L + +Y+DS Y G + ++ +W++NG+KT+ V NIDLW + +
Sbjct: 182 LRVALDSHPCYNLCVYSDSKYTVMGVNSYLHRWERNGFKTAGGGDVANIDLWSQLTKLRN 241
Query: 117 QH--------------------------KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+H + L + GHAG NE DR+A A S
Sbjct: 242 RHLSRCAERFTMEFRFKASLAAIAARAVALQLKHVPGHAGVYGNEMADRLAVEACES 298
>gi|9634979|ref|NP_054716.1| Pol [equine foamy virus]
gi|7595332|gb|AAF64414.1|AF201902_2 Pol [equine foamy virus]
Length = 1153
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 8 EVHAYTDGACSGNPGP-----GGWGVL-LRYKGKEKIISGGEKETTNNRMELMAA----I 57
EV YTDG+ +P G G++ +RY+ + II ++ +
Sbjct: 590 EVVFYTDGSSIKSPKKDKQHSAGMGIIAVRYQPQMNIIQEWSIPLGDHTAQFAEIAAFEF 649
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
A++ VL+ TDS YV K ++Q + W NG+ + KK +K++ W +
Sbjct: 650 ALKQAIRKMGPVLIVTDSDYVAKSYNQELDFWVSNGFVNNKKKPLKHVSKWKSIADCKKH 709
Query: 118 H-KVDLYWIKGHAGNQ------ENEKVDRIARNA 144
+ + GH + N D++A A
Sbjct: 710 KADIHVIHEPGHQNDLQSPYAMGNNAADKLAVKA 743
>gi|229149897|ref|ZP_04278125.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
gi|228633578|gb|EEK90179.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
Length = 128
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPPVQLSVPLGTMSNHEAEYRALLLALKYCIEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + + +D +++++ +
Sbjct: 62 STVSFRTDSQLVERAVEKAYA---------KNTIFAPLLDEALQYIKNFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|289579996|ref|YP_003478462.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|289529549|gb|ADD03900.1| ribonuclease H [Natrialba magadii ATCC 43099]
Length = 197
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
H Y DG GNPGP G G ++ E R A
Sbjct: 70 HVYFDGGARGNPGPAGIGWVIVTSEGIV----AEGSKRIGRATNNQAEYEALIAALEAAR 125
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
D +V +G S+ I K + + T++ + + + + A W H
Sbjct: 126 DYDYDEIHV-RGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFD------EWTLEHV 178
Query: 130 GNQENEKVDRIARNA 144
+ N + D +A A
Sbjct: 179 PREVNSRADELANEA 193
>gi|222478744|ref|YP_002564981.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
gi|222451646|gb|ACM55911.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
Length = 198
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCK 68
H Y DGA GNPGPG G L TNN+ E A I+AL A
Sbjct: 70 HVYFDGASRGNPGPGAVGWCLVTADGIVAEGGERIGRVTNNQAEYAALIRALEAADEY-- 127
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D + + Q G ++ ++ + ++ + W GH
Sbjct: 128 -----DFDEIDVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLERFDR-----WSIGH 177
Query: 129 AGNQENEKVDRIARNA 144
+ NE+ D +A A
Sbjct: 178 VPREINERADDLANEA 193
>gi|226307145|ref|YP_002767105.1| ribonuclease H/acid phosphatase [Rhodococcus erythropolis PR4]
gi|226186262|dbj|BAH34366.1| ribonuclease H/acid phosphatase [Rhodococcus erythropolis PR4]
Length = 374
Score = 66.8 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 43/148 (29%), Gaps = 18/148 (12%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIK--AL 60
+V DG GNPGP G+G ++ + TNN E I A
Sbjct: 2 TPTQVIVEADGGSRGNPGPAGYGAVVFDSTRSVLAERKESIGIATNNVAEYRGLIAGLAA 61
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V + DS V + S K A+ +V
Sbjct: 62 AGELGASTVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLQRRAAELATQFSRV 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI EN DR+A A +
Sbjct: 112 TYTWIP----RGENSHADRLANEAMDAA 135
>gi|254557249|ref|YP_003063666.1| ribonuclease H (putative) [Lactobacillus plantarum JDM1]
gi|254046176|gb|ACT62969.1| ribonuclease H (putative) [Lactobacillus plantarum JDM1]
Length = 294
Score = 66.8 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W + + S GE TNNRME+MA ++
Sbjct: 69 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 128
Query: 59 ALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
AL L+ +L DS YV ++ + + N +LW +
Sbjct: 129 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNGPLVNAELWREVDRL 188
Query: 115 SAQHK-VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 189 LPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQM 223
>gi|154277392|ref|XP_001539537.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413122|gb|EDN08505.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 375
Score = 66.8 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 64 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 123
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 124 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 180
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 181 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 209
>gi|72162352|ref|YP_290009.1| bifunctional RNase H/acid phosphatase [Thermobifida fusca YX]
gi|71916084|gb|AAZ55986.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 382
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 20/150 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAI 57
M + R + DGA GNPGP G+G +R + ++ E TNN E I
Sbjct: 1 MRAGMGRRIVIEADGASRGNPGPAGYGARVRDADTGELLAEVASPIGEATNNVAEYRGLI 60
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+A A+ V + DS V + S K A
Sbjct: 61 AGLEAAAAIDPTAAVEVRMDSKLVVEQMSGRW----------KIKHPALQPLARQARQVA 110
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++ V W+ ++N + DR+A A
Sbjct: 111 ASLASVTYRWVP----REQNAQADRLANEA 136
>gi|119716247|ref|YP_923212.1| phosphoglycerate mutase [Nocardioides sp. JS614]
gi|119536908|gb|ABL81525.1| Phosphoglycerate mutase [Nocardioides sp. JS614]
Length = 401
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 22/152 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KAL 60
R V DG GNPGP +G +LR + +NN E I +
Sbjct: 3 RSVVVEADGGSRGNPGPAAYGAVLRDAETGAVIAEDATAIGIASNNVAEYSGLIAGLRLA 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + DS V + S K ++ A
Sbjct: 63 ERFAPDADIEVRMDSKLVVEQMSGRWKI------------KHPDMRPLATEASRLAPFGT 110
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+ ++N+ DR+A A ++ +
Sbjct: 111 TYTWVP----REQNKHADRLANEALDGLRSGV 138
>gi|126278230|ref|XP_001380404.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 1213
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Query: 12 YTDGACSGN-PGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+C N G G+ + E I +G + + + A+ +
Sbjct: 658 YTDGSCLRNESGILVAGYAI---TTTAEVIEAGHLPSAISAQQAELEAVTRACEQAKGKR 714
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
V +YTDS Y + WQ G+ TS ++N + +EA K + + I G
Sbjct: 715 VNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIRNGAQVRRLLEALLLPKAIAIIKIPG 774
Query: 128 H----AGN-QENEKVDRIARNAAVSF 148
H + + + N D+ A+ AA
Sbjct: 775 HSRENSPHAKGNALADQYAKEAARQL 800
>gi|118467729|ref|YP_888582.1| bifunctional RNase H/acid phosphatase [Mycobacterium smegmatis str.
MC2 155]
gi|118169016|gb|ABK69912.1| phosphoglycerate mutase [Mycobacterium smegmatis str. MC2 155]
Length = 365
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 44/148 (29%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ TNN E I L A
Sbjct: 1 MK-VLVEADGGSRGNPGPAGYGAVVYDADHATVLAERKEAIGRATNNVAEYRGLIAGLEA 59
Query: 63 LKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + + A+ V
Sbjct: 60 AAETGATEVAVSMDSKLVIEQMCGRWRVK----------HPDLIELQRRAAALAAGFDHV 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
D WI + N DR+A A +
Sbjct: 110 DYTWIP----RERNSHADRLANEAMDAA 133
>gi|322378072|ref|ZP_08052559.1| putative ribonuclease H1 [Streptococcus sp. M334]
gi|321281054|gb|EFX58067.1| putative ribonuclease H1 [Streptococcus sp. M334]
Length = 290
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 9/148 (6%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKG---KEKIISGGEKETTNNRMELMAAIKA 59
S +L E Y DG+ N G GV++ + K+ SG +++ + A
Sbjct: 54 SSNLVEYEVYVDGSFDRNTNTYGSGVVITKENEVIKKISFSGSDEKYIESYQIAGEVKAA 113
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L A+++ D+ + + + D +K+ S+Q K
Sbjct: 114 LRAMEWA------IDNHISRIAIFYDYEGIKSWAVGEWKTNKSVSRDYKVKYDSLSSQVK 167
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V +K H+G + NE D++A+ A
Sbjct: 168 VYFNKVKAHSGVKFNELADQLAKRAIKE 195
>gi|163939500|ref|YP_001644384.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|229011009|ref|ZP_04168203.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
gi|229058324|ref|ZP_04196709.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|229166532|ref|ZP_04294285.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|163861697|gb|ABY42756.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|228616936|gb|EEK74008.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|228719998|gb|EEL71587.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|228750181|gb|EEM00013.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
Length = 128
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + ++ ++++++ +
Sbjct: 62 NIVSFRTDSQLVERAVEKEYAKNKIFAP---------LLEEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|322436933|ref|YP_004219145.1| ribonuclease H [Acidobacterium sp. MP5ACTX9]
gi|321164660|gb|ADW70365.1| ribonuclease H [Acidobacterium sp. MP5ACTX9]
Length = 203
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 14/148 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ A+ DG GNPGP G+G ++ K +S TNN E + L
Sbjct: 9 PETIFAHCDGGSRGNPGPSGYGAVITDTGGQKIAELSEFLGIRTNNYAEYSGLLAVLAYA 68
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++ L S+ + K Q +K + + ++
Sbjct: 69 VENKRLSLKV------VSDSELMVKQIQGKYKVNSPDLKPLWQEARDRIAKLKSFEI--- 119
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
HA +N+ D +A A K
Sbjct: 120 ---SHALRHKNKDADALANQAMDRGMKK 144
>gi|154269949|ref|XP_001535860.1| hypothetical protein HCAG_09207 [Ajellomyces capsulatus NAm1]
gi|150414478|gb|EDN09841.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 406
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 95 RSQPSTDLYVFSDGSEQNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 154
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 155 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 211
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 212 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 240
>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309314510|gb|EFP91101.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1463
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 3/145 (2%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
S + R + ++DG+ +P GG G + + S T+ A L A
Sbjct: 1150 STNPRSLLIFSDGSF--HPEKGGAGAAICP-SERVFSSYNLGGNTSISNHESEAAGVLAA 1206
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L+ + D S + + ++ + +
Sbjct: 1207 LELANHLCSTLDRSNIMIFMDNQGVISRTKNPRSPKPGQWIFEKIDSSISLLPEGLGISF 1266
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W GH NE D++AR A S
Sbjct: 1267 VWCPGHVNIPGNEMADQLAREALES 1291
>gi|242770563|ref|XP_002342006.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218725202|gb|EED24619.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1159
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 19/152 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKE--------KIISGGEKETTNNRMELMAAIKA 59
+ +TDG+ N G G + + + E L +++
Sbjct: 936 TIQFFTDGSGFDN----GIGAAVYSSIGQAYKLVGSSNTHTVYAGELEGIDAALEILLRS 991
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
P + +YTD+ + Q + + + + ++ +
Sbjct: 992 QPCDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWR 1044
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V L W+ GH G NEK D++A+ AAV +
Sbjct: 1045 VRLQWVPGHEGVPGNEKADQLAKLAAVKATRR 1076
>gi|196018957|ref|XP_002118900.1| hypothetical protein TRIADDRAFT_9889 [Trichoplax adhaerens]
gi|190577810|gb|EDV18615.1| hypothetical protein TRIADDRAFT_9889 [Trichoplax adhaerens]
Length = 98
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 45 ETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN 104
ETTNNRMEL A I+AL +K +V +Y+DSSY+ G WI W++ GWKTS K V N
Sbjct: 2 ETTNNRMELRAVIEALKEIKEGREVHVYSDSSYIINGMKSWIDDWKKRGWKTSSNKPVSN 61
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
DLW+K S++ + +KGH+G++ NEK D +A
Sbjct: 62 KDLWLKLDNLSSKFNIKFKKVKGHSGDEYNEKADSLA 98
>gi|154277140|ref|XP_001539411.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412996|gb|EDN08379.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1128
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 831 RSQPSTDLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAV--G 888
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++ L D++ V G + + + E QH
Sbjct: 889 ACRALDNPQIWLCLDNTSVIWGIRGSAAAS--------------SNWAYNRCHELLRQHN 934
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 935 VGLKWAPGHMGIEGNEEADRLAKRAVSS 962
>gi|254464162|ref|ZP_05077573.1| RNA-directed DNA polymerase [Rhodobacterales bacterium Y4I]
gi|206685070|gb|EDZ45552.1| RNA-directed DNA polymerase [Rhodobacterales bacterium Y4I]
Length = 580
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 11 AYTDGA----CSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
TDG+ + + G P G + ++ KE SG ++ TTNNRMEL A I+A+ ++
Sbjct: 439 ISTDGSTAGKSNRDTGLAPVGAWAYINHQTKE-ERSGSDRGTTNNRMELKAVIQAIDSIP 497
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V++ +DS YV + N DLW +FV+ S ++ + W
Sbjct: 498 TGGAVIIRSDSKYVSNAVNNGSIV-------------TSNHDLWQEFVDVSKGREIRVVW 544
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+KGH G+ NE D +AR A
Sbjct: 545 VKGHDGDAFNEAADNLARQTAE 566
>gi|91202043|emb|CAJ75103.1| similar to ribonuclease H [Candidatus Kuenenia stuttgartiensis]
Length = 197
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 50/145 (34%), Gaps = 18/145 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTA--L 63
+ +TDGA GNPG G G+ + + I E TNN E A I A
Sbjct: 66 TLVIHTDGASRGNPGKAGAGIAIFDGNYHLVEEIGKFLGEATNNVAEYEAMILAAQKAVS 125
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
YP KV+ TDS + + VKN L + K
Sbjct: 126 YYPGKVVFKTDSELLVRQV--------------KGIYRVKNPTLISLHKKLMTLFKTLPL 171
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W H +EN D IA A S
Sbjct: 172 WEISHVPREENSLADTIANRAIDSA 196
>gi|242797316|ref|XP_002482987.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719575|gb|EED18995.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1249
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V K + E L +++
Sbjct: 922 TIQFFTDGSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 979
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 980 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 1032
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+ GH G NEK D++A+ AAV +
Sbjct: 1033 LQWVPGHEGVPGNEKADQLAKLAAVEATRR 1062
>gi|242827232|ref|XP_002488790.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712046|gb|EED11474.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1907
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V K + E L +++
Sbjct: 1580 TIQFFTDGSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 1637
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 1638 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 1690
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+ GH G NEK D++A+ AAV +
Sbjct: 1691 LQWVPGHEGVPGNEKADQLAKLAAVEATRR 1720
>gi|209549587|ref|YP_002281504.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535343|gb|ACI55278.1| ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 177
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 11/151 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+H + DG G GGW + R + GG ++++NN MEL A ++A +
Sbjct: 24 LHLFADGCYEPGSGHGGWSFVAYRDAVEIASGFGGAEDSSNNSMELTAVLRAAMWINSQT 83
Query: 68 K---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID-------LWMKFVEASAQ 117
++++DS Y KG + W+ NGWK S ++ S
Sbjct: 84 AGEAAIIWSDSIYAVKGCNSRRHIWKNNGWKKSSPNGQGRRRTIDNAELWKAVDLQLSQN 143
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V + W KGH+G NE+ D +A +S
Sbjct: 144 ALVTIAWCKGHSGVVGNERADALADRGRLSI 174
>gi|268318656|ref|YP_003292312.1| putative ribonuclease H [Lactobacillus johnsonii FI9785]
gi|262397031|emb|CAX66045.1| putative ribonuclease H [Lactobacillus johnsonii FI9785]
Length = 243
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ + SGGE TNN+MEL+ I
Sbjct: 89 TIYTDGGSR-NTGVHKGGHVNETDKAAWAYLIEWDNGRTYGSGGEFGATNNKMELLGLIN 147
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + +L DS YV G ++ + + + N W K
Sbjct: 148 ALEKLIELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRSNGPLINASEWKKLDSL 207
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W KGHA NQ N VD K
Sbjct: 208 LGHFSDSEFSWTKGHADNQGNNFVDHELNKYMDQMK 243
>gi|48696415|ref|YP_024455.1| putative ribonuclease [Staphylococcus phage K]
gi|66395044|ref|YP_241085.1| ORF096 [Staphylococcus phage G1]
gi|37729104|gb|AAO47471.1| ORF24 [Staphylococcus phage K]
gi|62637066|gb|AAX92177.1| ORF096 [Staphylococcus phage G1]
gi|182627874|gb|ACB89036.1| gp ORF045 [Staphylococcus phage A5W]
Length = 141
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 2/140 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V+ YTDG+ S N G G G +L K I + ++ A L
Sbjct: 3 DSVNIYTDGSSSYNKGKVGSGAVLVSKEGNIISEISKSVDKPGLIKYNNV--AGEILACC 60
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ Y T + + + E ++ +K
Sbjct: 61 YGIEEAIKLGYNQAIVYIDYIGLIHWYEGTWSARNILSKTYINMIREYQKVIDINFVKVK 120
Query: 127 GHAGNQENEKVDRIARNAAV 146
H+ ++ N+ D +A+ +
Sbjct: 121 SHSNDKWNDYADNLAKKSID 140
>gi|42518184|ref|NP_964114.1| hypothetical protein LJ0098 [Lactobacillus johnsonii NCC 533]
gi|41582468|gb|AAS08080.1| hypothetical protein LJ_0098 [Lactobacillus johnsonii NCC 533]
Length = 243
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ + SGGE TNN+MEL+ I
Sbjct: 89 TIYTDGGSR-NTGVHKGGHVNETDKAAWAYLIEWDNGRTYGSGGEFGATNNKMELLGLIN 147
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + +L DS YV G ++ + + + N W K
Sbjct: 148 ALEKLIELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRSNGPLINASEWKKLDSL 207
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W KGHA NQ N VD K
Sbjct: 208 LGHFSDSEFSWTKGHADNQGNNFVDHELNKYMDQMK 243
>gi|257389105|ref|YP_003178878.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
gi|257171412|gb|ACV49171.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
Length = 197
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIKALT 61
+H VHAY DGA GNPGP G +L G TNN+ E A ++ L
Sbjct: 63 REHGGRVHAYFDGASRGNPGPAAVGWVLVTDDGIVADGGERIGTATNNQAEYRALLRVLE 122
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +G S+ I K + W T+D + ++ + + A + ++
Sbjct: 123 VARDHGF------DEIRLRGDSELIVKQVRGEWNTNDPELREHRVDAREGLMAFEEWSIE 176
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
H + N + D +A A
Sbjct: 177 ------HVPREINARADELANEA 193
>gi|328553082|gb|AEB23574.1| ribonuclease H [Bacillus amyloliquefaciens TA208]
Length = 130
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPGP G G+ +++ GK + S + +N E +A I+ +
Sbjct: 4 EIYVDGASAGNPGPSGIGIFIKHDGKTESFSIPIGDHSNQEAEFLALIEGMKLCA----- 58
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S + S +++ + ++ + WI G
Sbjct: 59 -ARGYESVSFRTDSDIVERAADLEAVKNKTFQPFVDEIIRLKAGFPLFF---IKWIPG-- 112
Query: 130 GNQENEKVDRIARNAAVSFK 149
++N+ D++A+ A K
Sbjct: 113 --RQNQTADQLAKKAIRLNK 130
>gi|254994682|ref|ZP_05276872.1| ribonuclease H (rnhA) [Anaplasma marginale str. Mississippi]
Length = 103
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
MEL A I AL AL PC V + TDS+YV G ++WI+KW+ NGW+TS+K VKN+DLW++
Sbjct: 1 MELTAVIMALAALSGPCSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVE 60
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIAR 142
+ H ++ W+K HAGN+ NE+ D +AR
Sbjct: 61 LERLTLLHSIEWRWVKAHAGNEYNEEADMLAR 92
>gi|227889063|ref|ZP_04006868.1| ribonuclease [Lactobacillus johnsonii ATCC 33200]
gi|227850292|gb|EEJ60378.1| ribonuclease [Lactobacillus johnsonii ATCC 33200]
Length = 249
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 53/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ + + SGGE TNN+MEL+ I
Sbjct: 95 TIYTDGGSR-NTGVHKGGHVNETDKAAWAYLIEWDNRRTYGSGGEFGATNNKMELLGLIN 153
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + +L DS YV G ++ + + + N W K
Sbjct: 154 ALEKLIELKFNNKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRSNGPLINASEWKKLDSL 213
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W KGHA NQ N VD K
Sbjct: 214 LGHFSDSEFSWTKGHADNQGNNFVDHELNKYMDQMK 249
>gi|1200137|emb|CAA65006.1| putative RNaseH [Streptomyces galbus]
Length = 133
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 6 LRE-VHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALT 61
+RE V A DGA GNPGP GW ++ + + +G TNN EL A + LT
Sbjct: 1 MRERVVAACDGASKGNPGPAGWAWVVSDDDERTPARWEAGPLGRATNNVAELTALERLLT 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT 101
A+ + + DS Y K + W+ W++NGWKT+ K
Sbjct: 61 AVDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTAAGKP 100
>gi|325678013|ref|ZP_08157652.1| hypothetical protein CUS_4751 [Ruminococcus albus 8]
gi|324110293|gb|EGC04470.1| hypothetical protein CUS_4751 [Ruminococcus albus 8]
Length = 149
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ + +G+++ G+E + ++ + +
Sbjct: 16 KIYVDGSYNSKTNIFSYGMVIIRNGQEITSNRSF--FEPEMAQMRNVAGEIMGATAAMEY 73
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L + S + + +++ + + + + K+ +KGH+
Sbjct: 74 CLENNISECFLFYDYEGIEKWPLREWKANR--IGTKNYVDFYDSIKDKVKIKFIHVKGHS 131
Query: 130 GNQENEKVDRIARNAA 145
G++ NE DR+A+ AA
Sbjct: 132 GDKYNEMADRLAKAAA 147
>gi|154686445|ref|YP_001421606.1| YpdQ [Bacillus amyloliquefaciens FZB42]
gi|154352296|gb|ABS74375.1| YpdQ [Bacillus amyloliquefaciens FZB42]
Length = 131
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 17/146 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL-- 63
+ Y DGA +GNPGP G G+ +++ GK + S + +N E +A I+ +
Sbjct: 1 MMPAEIYVDGASAGNPGPSGIGIFIKHDGKTESFSIPIGDHSNQEAEFLALIEGMKLCAA 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ V TDS V + K + + + +K + +
Sbjct: 61 RGFESVSFRTDSDIVERAAD-------LEAVKNKAFQPFVDEIIQLK----AGFPLFFIK 109
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFK 149
WI G ++N+ D++A+ A K
Sbjct: 110 WIPG----RQNQTADQLAKKAIRLNK 131
>gi|299140285|ref|ZP_07033450.1| ribonuclease H [Acidobacterium sp. MP5ACTX8]
gi|298597742|gb|EFI53915.1| ribonuclease H [Acidobacterium sp. MP5ACTX8]
Length = 258
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTALKYP 66
+ A+ DG GNPGP G+G L++ + +S TNN E + L
Sbjct: 45 ISAHCDGGARGNPGPSGYGALIQDEAGLVLAELSEFLGIRTNNYAEYSGLLGCLQWALDN 104
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
L S+ + K Q +K + + + + ++
Sbjct: 105 GYKNLRV------VSDSELMVKQIQGKYKVNSPDLRPLWEEARRRIAQLDGFQI------ 152
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
HA +N+ DR+A A +
Sbjct: 153 SHALRHKNKDADRLANEAMDRGMKR 177
>gi|15789547|ref|NP_279371.1| hypothetical protein VNG0255C [Halobacterium sp. NRC-1]
gi|169235258|ref|YP_001688458.1| hypothetical protein OE1400F [Halobacterium salinarum R1]
gi|10579895|gb|AAG18851.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726324|emb|CAP13105.1| conserved hypothetical protein [Halobacterium salinarum R1]
Length = 199
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
VHAY DGA GNPGP G +L + E T R A
Sbjct: 69 RVHAYFDGASRGNPGPAAVGWVLVSGDGGIV---AEGGDTIGRATNNQAEYDALIAALEA 125
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
D + +G SQ ++K W T+D + + + +
Sbjct: 126 AADFGFDDIEL-RGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSIT------ 178
Query: 128 HAGNQENEKVDRIARNA 144
H NE+ D +A A
Sbjct: 179 HVPRATNERADALANEA 195
>gi|321311665|ref|YP_004203952.1| ribonuclease H [Bacillus subtilis BSn5]
gi|320017939|gb|ADV92925.1| ribonuclease H [Bacillus subtilis BSn5]
Length = 132
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPGP G G+ ++++G + S TN E +A I+ +
Sbjct: 4 EIYVDGASAGNPGPSGIGIFIKHEGTAESFSIPIGVHTNQEAEFLALIEGMKLCAT---- 59
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S + S +++ + + ++ + WI G
Sbjct: 60 --RGYQSVSFRTDSDIVERATELEMVKNKMFQPFVEEIIRLKAAFPLFF---IKWIPG-- 112
Query: 130 GNQENEKVDRIARNAAV 146
++N+K D +A+ A
Sbjct: 113 --KQNQKADLLAKEAIR 127
>gi|302306518|ref|NP_982930.2| ABL017Cp [Ashbya gossypii ATCC 10895]
gi|299788554|gb|AAS50754.2| ABL017Cp [Ashbya gossypii ATCC 10895]
Length = 327
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 25/163 (15%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAA--------- 56
Y DG+ N G GV R + + TNNR EL+AA
Sbjct: 164 VVYCDGSALANGSARATAGIGVYFRDEPHLSLSEPLTLPPYTNNRAELLAASRALELIWR 223
Query: 57 -IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQ-----------QNGWKTSDKKTVKN 104
+ A+ A +L TDS YV + S + +
Sbjct: 224 NLAAVPAAAPRALYVLRTDSEYVVRLLSALYRAYDSPAALAAVSNGDLAVPLVQNYLRVK 283
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + L W++GH NE+ DR+AR AA S
Sbjct: 284 HWYLLNTACFHPPAEFALEWVRGHDNEPGNEEADRLAREAAAS 326
>gi|229160640|ref|ZP_04288634.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
gi|228622839|gb|EEK79671.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
Length = 128
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTALKYP 66
+ Y DGA GNPGP G GV ++ +S +N+ E A +
Sbjct: 2 IEVYIDGATKGNPGPSGAGVFIKGVQPPVQLSLPLGTMSNHEAEYHALLAALKYCTEHNY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K + +D ++++++ +
Sbjct: 62 SIVSFRTDSQLVERAIEKEYAKNKMFAP---------LLDEALQYIKSFDLFFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A +
Sbjct: 109 --IPSSQNKVADELARKAILQ 127
>gi|242825331|ref|XP_002488418.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712236|gb|EED11662.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1110
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V K + E L +++
Sbjct: 888 TIQFFTDGSGFDNG--IGAAVYSSIGQAYKLVGSSDTHTVYAGELEGIDAALEILLRSQP 945
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 946 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 998
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
L W+ GH G NEK D++A+ AA
Sbjct: 999 LQWVPGHEGVPGNEKADQLAKLAA 1022
>gi|254526005|ref|ZP_05138057.1| ribonuclease H [Prochlorococcus marinus str. MIT 9202]
gi|221537429|gb|EEE39882.1| ribonuclease H [Prochlorococcus marinus str. MIT 9202]
Length = 239
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI-- 57
M+S + + A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI
Sbjct: 1 MNSNSI-AIEAATDGACSGNPGPGGWGGLIIFDDNSELEIGGSEQNTTNNRMELTAAIKT 59
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + L TDS YV +G+++WI W++NGWKTS K V+N+DLW K +
Sbjct: 60 LEKLKTYQLKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSSGKPVQNLDLWQKIDQLRI 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
+ + ++KGH+G+++N++VD+IA
Sbjct: 120 NGLI-MEYVKGHSGDKQNDRVDKIAT 144
>gi|150866102|ref|XP_001385588.2| hypothetical protein PICST_84962 [Scheffersomyces stipitis CBS
6054]
gi|149387358|gb|ABN67559.2| ribonuclease H [Scheffersomyces stipitis CBS 6054]
Length = 289
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 60/164 (36%), Gaps = 22/164 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--------GEKETTNNRMELMAAIKALT 61
Y DGA GN ++TTN R EL A AL
Sbjct: 124 KIYVDGAARGNGQDRHVAGGYGVYYGPGHSKNAAVAMDTVDNQKTTNQRAELHALKHALN 183
Query: 62 ALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF------ 111
+ K +++DS Y S+W K W +N W S + V N D+
Sbjct: 184 DIANDDSSNTKYSIHSDSKYAINSVSEWSKGWNENNWTNSKGQPVANRDIIESCLPILDK 243
Query: 112 ----VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
KV+ + +KGHAG+ NE DR+A A +++
Sbjct: 244 VNDKYSEKGWGKVEFHHVKGHAGDPGNEAADRLANEGANQMESR 287
>gi|320354804|ref|YP_004196143.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
gi|320123306|gb|ADW18852.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
Length = 202
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA--LKYP 66
+TDGA GNPG G G +L G E+ S TNN E A + L
Sbjct: 73 LFTDGASRGNPGQAGAGAVLLDNGNEELAAKSVYLGVCTNNVAEYKALLIGLDEALRHGC 132
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V ++ D S+ I + Q +K ++ + + ++ A +
Sbjct: 133 TDVAVFLD--------SELIVRQIQGRYKVKNEALLPLFQQVQERLDRFAAWSIT----- 179
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
H +N + D++A
Sbjct: 180 -HVPRSQNARADQLANRGIDQH 200
>gi|329666495|gb|AEB92443.1| ribonuclease H [Lactobacillus johnsonii DPC 6026]
Length = 243
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ + SGGE TNN+MEL+ I
Sbjct: 89 TIYTDGGSR-NTGVHKGGHVNETDKAAWAYLIEWDNGRTYGSGGEFGATNNKMELLGLIN 147
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + +L DS YV G ++ + + + N W K
Sbjct: 148 ALEKLIELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRSNGPLINASEWKKLDSL 207
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ W KGHA NQ N VD K
Sbjct: 208 LGDFSDSEFSWTKGHADNQGNNFVDHELNKYMDQMK 243
>gi|282861642|ref|ZP_06270706.1| Phosphoglycerate mutase [Streptomyces sp. ACTE]
gi|282563458|gb|EFB68996.1| Phosphoglycerate mutase [Streptomyces sp. ACTE]
Length = 413
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 23/151 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALT--- 61
++ DG GNPGP G+G ++ + + + +NN E I LT
Sbjct: 6 QLVVEADGGSRGNPGPAGYGAVVIDQETAQVLAETAEYIGVASNNVAEYRGLIAGLTAVR 65
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + DS V + S K L +
Sbjct: 66 DLFPDTAVRVRVRMDSKLVVEQMSGRW-----------KIKHPDMKPLAAEAAGILPAAS 114
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V WI EN+ DR+A A + K
Sbjct: 115 VTYEWIP----RAENKHADRLANEAMDAGKR 141
>gi|291166555|gb|EFE28601.1| ribonuclease H [Filifactor alocis ATCC 35896]
Length = 230
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 19/151 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIK---ALT 61
+ ++ YTDG GNPGP G +++ E + G E T N + A+ +
Sbjct: 1 MEKIVIYTDGGSRGNPGPSAIGYKIIQPSTGEFLCIGEEIGETTNNIAEYTALCESLRVC 60
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ V +Y D S+ + K ++ + + ++ + +
Sbjct: 61 LCNHVKSVEVYMD--------SELVVKQIIGNYRVKNINLKPLYEQAKNYISQLSDFSIH 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
H +N++ DR+ A + K +I
Sbjct: 113 ------HILRGKNKEADRLVNLALDN-KARI 136
>gi|111018194|ref|YP_701166.1| bifunctional RNase H/acid phosphatase [Rhodococcus jostii RHA1]
gi|110817724|gb|ABG93008.1| probable alpha-ribazole phosphatase [Rhodococcus jostii RHA1]
Length = 368
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 40/144 (27%), Gaps = 19/144 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALK 64
V DG GNPGP G+G ++ TNN E I L A
Sbjct: 5 RVVVEADGGSRGNPGPAGYGAVVFDAANGTVLAERKESLGIATNNVAEYRGLIAGLDAAA 64
Query: 65 Y--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+V + DS V + S K A V
Sbjct: 65 ELGASEVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLQRQASTLARQFDSVTY 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
WI EN DR+A A
Sbjct: 115 TWIP----RAENAHADRLANEAMD 134
>gi|294460894|gb|ADE76020.1| unknown [Picea sitchensis]
Length = 242
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGK---EKIISGGEKETTNNRMELMAAIKALTA--LK 64
Y DGAC GNPG G G LL+ E+ S + TNN E A I L
Sbjct: 24 KLYFDGACRGNPGTAGIGFLLKDSNGEVVERFCSLLGYKLTNNVAEYKALIAGLQHALDH 83
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y DS + K + + ++++ + + + + H+V
Sbjct: 84 GITSIQAYGDSELICKQVNGQYRV--------ANRRLARYYNTVCQLLGKFESHEVL--- 132
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
H EN D +A +
Sbjct: 133 ---HVPRDENCAADDLANDGID 151
>gi|157412557|ref|YP_001483423.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9215]
gi|157387132|gb|ABV49837.1| possible ribonuclease HI [Prochlorococcus marinus str. MIT 9215]
Length = 239
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI-- 57
M+S + + A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI
Sbjct: 1 MNSNSI-AIEAATDGACSGNPGPGGWGGLIIFDDNSELEIGGSEQNTTNNRMELTAAIKT 59
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ L + L TDS YV +G+++WI W++NGWKTS K V+N+DLW K +
Sbjct: 60 LEKLKTYQLKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSSGKPVQNLDLWQKIDQLRI 119
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
+ + ++KGH+G+++N++VD+IA
Sbjct: 120 NGLI-MEYVKGHSGDKQNDRVDKIAT 144
>gi|116492108|ref|YP_803843.1| RNase HI [Pediococcus pentosaceus ATCC 25745]
gi|116102258|gb|ABJ67401.1| RNase HI [Pediococcus pentosaceus ATCC 25745]
Length = 272
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 8 EVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
+ YTDG W L++ G+ S GE TNNRME+MA I
Sbjct: 72 SIILYTDGGSRNTGNVRGGHVRKEDVAAWAFLIQKDGESISGSNGEFGATNNRMEIMALI 131
Query: 58 ----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
K + VL+ DS YV + Q + + V
Sbjct: 132 NGLQKIIDRYGEKAAVLVVADSKYVLDAIQRNWLSGWQRRGWKKANGEIVANKELWQAVA 191
Query: 114 AS--AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ ++ W KGHA N+ N VD++ +
Sbjct: 192 SILKRMPNLEYRWTKGHATNEGNVFVDQLLNKTMDRMLRE 231
>gi|116628774|ref|YP_813946.1| RNase H [Lactobacillus gasseri ATCC 33323]
gi|311111386|ref|ZP_07712783.1| ribonuclease H1 [Lactobacillus gasseri MV-22]
gi|116094356|gb|ABJ59508.1| RNase HI [Lactobacillus gasseri ATCC 33323]
gi|311066540|gb|EFQ46880.1| ribonuclease H1 [Lactobacillus gasseri MV-22]
Length = 251
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 53/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ ++G SGGE TNN+MEL+ I
Sbjct: 97 TIYTDGGSR-NTGVHKGGHVNKTDKAAWAYLIEWQGGRTYGSGGEFGATNNKMELLGLIN 155
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K L +L DS YV G ++ + + + N W K
Sbjct: 156 ALEKLLELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRANGPLINASEWKKLDSL 215
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W KGHA N+ N VD K
Sbjct: 216 LGHFSDSTFSWTKGHADNEGNVFVDHELNRYMDKMK 251
>gi|256851788|ref|ZP_05557176.1| ribonuclease HI [Lactobacillus jensenii 27-2-CHN]
gi|260661950|ref|ZP_05862860.1| ribonuclease HI [Lactobacillus jensenii 115-3-CHN]
gi|297205409|ref|ZP_06922805.1| probable ribonuclease [Lactobacillus jensenii JV-V16]
gi|256615746|gb|EEU20935.1| ribonuclease HI [Lactobacillus jensenii 27-2-CHN]
gi|260547419|gb|EEX23399.1| ribonuclease HI [Lactobacillus jensenii 115-3-CHN]
gi|297149987|gb|EFH30284.1| probable ribonuclease [Lactobacillus jensenii JV-V16]
Length = 255
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 8 EVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
EV +TDG C + W L+ ++G +GGE TNN+MEL I
Sbjct: 100 EVVVFTDGGCRNHGNVKGGHVQEDDKAAWAYLIEHEGNRISKAGGEFGATNNKMELTGLI 159
Query: 58 KALTALK----YPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFV 112
+A+ + K + DS YV + ++ W+ NGWK S +
Sbjct: 160 EAMKRILALKLNNKKTIFVLDSRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQELSR 219
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W GH N N VD+
Sbjct: 220 LLPQFKNAEFEWTHGHEDNYGNNFVDKALNIYMDKM 255
>gi|149182903|ref|ZP_01861362.1| ribonuclease H [Bacillus sp. SG-1]
gi|148849406|gb|EDL63597.1| ribonuclease H [Bacillus sp. SG-1]
Length = 136
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 20/151 (13%)
Query: 6 LRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--ALTA 62
+++ V Y DGA +G+PGP G G+ ++ G+ S N+ E +A IK +
Sbjct: 1 MKKMVEVYIDGASAGDPGPSGAGIYIKNSGENHSYSIPLGIKENHEAEYLACIKALQICK 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K+ + +DS V + + + L + +
Sbjct: 61 EKHFNVLSFRSDSQAVVNAVEKEYARNK-----------KYKHLLEEILFLSKEFDLFFI 109
Query: 123 YWIKGHAGNQENEKVDRIARNA--AVSFKNK 151
WI +EN++ D +AR A +++
Sbjct: 110 KWIPS----KENKRADELARKAVHMNEAQDE 136
>gi|310789359|gb|EFQ24892.1| hypothetical protein GLRG_00036 [Glomerella graminicola M1.001]
Length = 266
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 10/148 (6%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYK--GKEKIISGGEKETTNNRMELMAAIKALTALKY 65
YTDGACS N GG + + + R + A +
Sbjct: 109 IYTDGACSDNGAADARGGCAFVFKPNGLNGQSGSYRHTSNRAELRAVIAALRFRAWHDEG 168
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD---KKTVKNIDLWMKFVEASAQHKVDL 122
V++ TDSSYV G + W + W +N + S K + + VE V +
Sbjct: 169 FRSVVIATDSSYVVDGATSWTRNWARNDCRLSTGDLVKNRDLWEALLLDVEELRDCGVSV 228
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ K Q+N DR A+ AA + ++
Sbjct: 229 RFWK--IPRQQNTLADREAKRAASAMES 254
>gi|145539484|ref|XP_001455432.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423240|emb|CAK88035.1| unnamed protein product [Paramecium tetraurelia]
Length = 754
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKY--P 66
Y DGA NPGP G GV L K ++ K I+ + TNN E +A +
Sbjct: 622 TLYFDGASKSNPGPAGAGVALFDKMQQIKEITQPLGKQTNNVAEFLALFLGIRYTLNLGI 681
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS + G + I QQ+ M
Sbjct: 682 NYLECFGDSKLIIDGMNNKINFKQQHLEDIRVAIYDYAQLFKMVRYT------------- 728
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
H +NE D++A AA+ K
Sbjct: 729 -HISRNQNEIADKLASAAALQSKK 751
>gi|325184773|emb|CCA19264.1| ribonuclease putative [Albugo laibachii Nc14]
Length = 258
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 26/170 (15%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGVLLRYKG--------KEKIISGGEKETTNNR 50
D + + DG+ N G+ + +EK G TNNR
Sbjct: 87 DPTSSKSYTVFCDGSALNNGKLGCKAGYACIFPDHPDWKIAGALEEKDKDGKVIPPTNNR 146
Query: 51 MELMAAIKALTALKYPCKV-----LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
E +AA+KAL + + +Y+DS + + ++WI +W+++ W+ K +
Sbjct: 147 AEYVAALKALQRVNEVDPIQQNTLFIYSDSMLLIRSMTEWITRWKESNWRKKTKTNSQYD 206
Query: 106 DLWMKF-----VEASAQHKVDLYWIKGHAGN-----QENEKVDRIARNAA 145
+ +E K+ ++ H G N+ D AR AA
Sbjct: 207 MVKNHDLLKALLETQGSRKIIWKHVRAHTGKTDWESTWNQVADDTAREAA 256
>gi|126342251|ref|XP_001369183.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 1399
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 12 YTDGACSGN-PGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+C N G G+ + E I +G + + + A+ L +
Sbjct: 843 YTDGSCLRNESGILVAGYAI---TTTAEVIEAGHLPSAISAQQAELEAVTRACELAKGKR 899
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
V +YTDS Y + WQ G+ TS +KN + +E K + + I G
Sbjct: 900 VNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEVLLLPKAIAIIKIPG 959
Query: 128 H----AGN-QENEKVDRIARNAAVS 147
H + + + N D+ A+ AA
Sbjct: 960 HSRENSPHAKGNALADQYAKEAARQ 984
>gi|154271390|ref|XP_001536548.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409218|gb|EDN04668.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 543
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 6/143 (4%)
Query: 8 EVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-ALK 64
+++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 238 DLYVFSDGSERNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGACRALECA 297
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ DSS ++ + + + + QH V L W
Sbjct: 298 VKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QHNVGLKW 354
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
GH G + NE+ DR+A+ A S
Sbjct: 355 APGHMGIEGNEEADRLAKRAVSS 377
>gi|118088659|ref|XP_001234064.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
Length = 1062
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
G+ GNP W + + E I ++ EL A +T + + TD
Sbjct: 545 GSSRGNPSR--WRAVAYHPSTETIWFEEGDGQSSQWAELRAVWMVITQEPGNSALNICTD 602
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG--NQ 132
S V++G + T + + D+W+ V Y + GH +
Sbjct: 603 SWAVYRGLT-LWIAQWATQDWTIHARPIWGKDMWVDIWNVVRHRTVRAYHVSGHQPLQSP 661
Query: 133 ENEKVDRIAR 142
N++ D +AR
Sbjct: 662 GNDEADTLAR 671
>gi|242816856|ref|XP_002486830.1| hypothetical protein TSTA_052420 [Talaromyces stipitatus ATCC
10500]
gi|218713295|gb|EED12719.1| hypothetical protein TSTA_052420 [Talaromyces stipitatus ATCC
10500]
Length = 476
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V K + E L +++
Sbjct: 149 TIQFFTDGSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 206
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 207 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 259
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+ GH G NEK D++A+ AAV +
Sbjct: 260 LQWVPGHEGVPGNEKADQLAKLAAVEATRR 289
>gi|300362587|ref|ZP_07058763.1| ribonuclease H1 [Lactobacillus gasseri JV-V03]
gi|300353578|gb|EFJ69450.1| ribonuclease H1 [Lactobacillus gasseri JV-V03]
Length = 251
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ ++ SGGE TNN+MEL+ I
Sbjct: 97 TIYTDGGSR-NTGVHKGGHVNKTDRAAWAYLIEWQDGRTYGSGGEFGATNNKMELLGLIN 155
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K L +L DS YV G ++ + + + N W +
Sbjct: 156 ALEKLLELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRSNGPLINATEWKRLDSL 215
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W KGHA N+ N VD K
Sbjct: 216 LGHFPDSTFSWTKGHADNEGNVFVDHELNRYMDKMK 251
>gi|302784366|ref|XP_002973955.1| hypothetical protein SELMODRAFT_414436 [Selaginella moellendorffii]
gi|300158287|gb|EFJ24910.1| hypothetical protein SELMODRAFT_414436 [Selaginella moellendorffii]
Length = 195
Score = 65.3 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 12/153 (7%)
Query: 11 AYTDGACS----GNPGPGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAIKALTA 62
++DG+ GN GG+GV + Y+ + + + EL+ +++L
Sbjct: 23 IFSDGSYKYDGPGNQQHGGYGVYIPSQGVYQAHGRRPQQDLRRCSAITFELLGLLESLQM 82
Query: 63 LKYPCK----VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V Y S + + + + + +
Sbjct: 83 AIMLQEKGGGVCHREVFVYTDSYDSLTLLEMYMENSTYLSRHSDVSTMESIVMFAGMLPC 142
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V +KGH NE D++A+ A + +
Sbjct: 143 NVHFCKVKGHDKVLGNEVADKLAKIGATLLEGQ 175
>gi|255655443|ref|ZP_05400852.1| putative ribonuclease [Clostridium difficile QCD-23m63]
gi|296451435|ref|ZP_06893172.1| probable ribonuclease [Clostridium difficile NAP08]
gi|296880216|ref|ZP_06904182.1| probable ribonuclease [Clostridium difficile NAP07]
gi|296259702|gb|EFH06560.1| probable ribonuclease [Clostridium difficile NAP08]
gi|296428805|gb|EFH14686.1| probable ribonuclease [Clostridium difficile NAP07]
Length = 199
Score = 65.3 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 3/137 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G GV++ K E I + EK + + + A K +
Sbjct: 64 IEAYVDGSYEHSIKMYGSGVVIL-KNNEVIKTYSEKGKEETLVGMRNVAGEIEASKIAMQ 122
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + F + G ++K+ + ++ + V +K H
Sbjct: 123 YCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEGTIAYKNFYDSIK--NKLNVKFTKVKAH 180
Query: 129 AGNQENEKVDRIARNAA 145
+GN+ NE+ D++A+ A
Sbjct: 181 SGNKYNEEADKLAKKAI 197
>gi|261824988|pdb|3HYF|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Active Site Inhibitor
gi|329666227|pdb|3QIN|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Pyrimidinol Carboxylic Acid Inhibitor
gi|329666228|pdb|3QIO|A Chain A, Crystal Structure Of Hiv-1 Rnase H With Engineered E. Coli
Loop And N- Hydroxy Quinazolinedione Inhibitor
Length = 150
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 16 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 70
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y +QWI W++ GWKT+DKK VKN+DL + +E + KV L W+ H G
Sbjct: 71 VTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKG 130
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 131 IGGNEQVDKLVSAGIRK 147
>gi|282932183|ref|ZP_06337632.1| ribonuclease H [Lactobacillus jensenii 208-1]
gi|281303695|gb|EFA95848.1| ribonuclease H [Lactobacillus jensenii 208-1]
Length = 249
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 8 EVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
EV +TDG C + W L+ ++G +GGE TNN+MEL I
Sbjct: 100 EVVVFTDGGCRNHGNVKGGHVQEDDKAAWAYLIEHEGNRISKAGGEFGATNNKMELTGLI 159
Query: 58 KALTALK----YPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFV 112
+A+ + K + DS YV + ++ W+ NGWK S +
Sbjct: 160 EAMKRILALKLNNKKTIFVLDSRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQELSR 219
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDR 139
+ W GH N N VD+
Sbjct: 220 LLPQFKNAEFEWTHGHEDNYGNNFVDK 246
>gi|217077169|ref|YP_002334885.1| RNase H [Thermosipho africanus TCF52B]
gi|217037022|gb|ACJ75544.1| RNase H [Thermosipho africanus TCF52B]
Length = 177
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 17/150 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTN-NRMELMAAIKALT-----A 62
+ Y DG+ S G+ +++ + EK E E +R + L
Sbjct: 33 IKVYIDGSYSSETKKIGFSIVILSQKIEKFYKSIENEELAKHRNVSGEILAVLYALEIAK 92
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K + LY D + K + + KT KF + KV
Sbjct: 93 QKGFKCITLYYDYEGLEKWITGEWR-----------AKTPLTRVYKEKFYNYAKDIKVKF 141
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+K H G + NE D +A+ A + ++ I
Sbjct: 142 EKVKSHTGVKYNELADELAKYAVETNESNI 171
>gi|16079258|ref|NP_390082.1| hypothetical protein BSU21990 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310113|ref|ZP_03591960.1| hypothetical protein Bsubs1_12101 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314435|ref|ZP_03596240.1| hypothetical protein BsubsN3_12022 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319357|ref|ZP_03600651.1| hypothetical protein BsubsJ_11948 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323633|ref|ZP_03604927.1| hypothetical protein BsubsS_12077 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|1730902|sp|P54162|RNHL_BACSU RecName: Full=14.7 kDa ribonuclease H-like protein
gi|1256624|gb|AAA96618.1| 41% identity over 125 aa to cell wall enzyme of E.faecalis;
putative [Bacillus subtilis subsp. subtilis str. 168]
gi|2634619|emb|CAB14117.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 132
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPGP G G+ ++++GK + S TN E +A I+ + K+
Sbjct: 4 EIYVDGASAGNPGPSGIGIFIKHEGKAESFSIPIGVHTNQEAEFLALIEGM-------KL 56
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
V I + + ++ ++ A + WI G
Sbjct: 57 CATRGYQSVSFRTDSDIVERATELEMVKNITFQPFVEEIIRLKAAFPLFFI--KWIPG-- 112
Query: 130 GNQENEKVDRIARNAAV 146
++N+K D +A+ A
Sbjct: 113 --KQNQKADLLAKEAIR 127
>gi|320105790|ref|YP_004181380.1| ribonuclease H [Terriglobus saanensis SP1PR4]
gi|319924311|gb|ADV81386.1| ribonuclease H [Terriglobus saanensis SP1PR4]
Length = 214
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V A+ DG GNPGP G+G ++ +S TNN E + L
Sbjct: 22 VLAHCDGGARGNPGPAGYGAVVTTEDGTVLAELSEFLGFKTNNFAEYSGLLGVLQWTLAN 81
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
L S+ + K Q +K + + + ++
Sbjct: 82 GHRKLKL------VSDSELMVKQIQGKYKVNSPDLKPLHAEARAMIGKLEKFEI------ 129
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
HA +N+ DR+A A +
Sbjct: 130 AHALRHKNKHADRLANEAMDRGMKR 154
>gi|154283279|ref|XP_001542435.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410615|gb|EDN06003.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 351
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 33 RSQPSTDLYVFSDGSEQNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 92
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 93 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 149
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 150 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 178
>gi|126699036|ref|YP_001087933.1| putative ribonuclease [Clostridium difficile 630]
gi|260683048|ref|YP_003214333.1| putative ribonuclease [Clostridium difficile CD196]
gi|260686646|ref|YP_003217779.1| putative ribonuclease [Clostridium difficile R20291]
gi|260209211|emb|CBA62476.1| putative ribonuclease [Clostridium difficile CD196]
gi|260212662|emb|CBE03717.1| putative ribonuclease [Clostridium difficile R20291]
Length = 204
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 3/137 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G GV++ K E I + EK + + + A K +
Sbjct: 69 IEAYVDGSYEHSVKMYGSGVVIL-KNNEVIKTYSEKGKEKTLVSMRNVAGEIEASKIAMQ 127
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + F + G ++K+ I + + V +K H
Sbjct: 128 YCIDNNVQNLILYFDYEGIEKWCTGVWKTNKE--GTIAYKNFYDSIKNKLNVKFTKVKAH 185
Query: 129 AGNQENEKVDRIARNAA 145
+GN+ NE+ D++A+ A
Sbjct: 186 SGNKYNEEADKLAKKAI 202
>gi|58336468|ref|YP_193053.1| ribonuclease H [Lactobacillus acidophilus NCFM]
gi|227903021|ref|ZP_04020826.1| ribonuclease H [Lactobacillus acidophilus ATCC 4796]
gi|58253785|gb|AAV42022.1| putative ribonuclease H [Lactobacillus acidophilus NCFM]
gi|227869264|gb|EEJ76685.1| ribonuclease H [Lactobacillus acidophilus ATCC 4796]
Length = 248
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 17/154 (11%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W L+ + + +GGE TNN+ME A I
Sbjct: 94 TIYTDGGTR-NTGVFKGGHVKKTDKAAWAYLIEWDSQSVHDAGGEYGATNNQMEQTALIN 152
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + +L DS YV + + + +KN+ W + E
Sbjct: 153 ALKKLIELGFNEKHLLFVLDSQYVLNAINNHWLEGWKKRGWKRSSGPLKNVSEWKELDEL 212
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
W KGHA N+ NE VD
Sbjct: 213 LKHFPDSTFKWTKGHANNRGNEFVDHELNRYMDK 246
>gi|222087941|ref|YP_002544356.1| hypothetical protein Arad_4988 [Agrobacterium radiobacter K84]
gi|221725389|gb|ACM28545.1| hypothetical protein Arad_4988 [Agrobacterium radiobacter K84]
Length = 165
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 9 VHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+H +TDG+ GGW + R + G E T NN MEL+A ++A L
Sbjct: 14 LHVFTDGSFDPVSKTGGWAFAVFRGSAQVFAAFGSEARTANNAMELLAILQACEWLADNA 73
Query: 68 ---KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI-------DLWMKFVEASAQ 117
+ +++TDS+Y G +W W+ N W+ V +
Sbjct: 74 AGEEAVIHTDSAYAVNGCIRWRHIWRSNKWRKRTPNGQGRSRSVADAAYWRAIDVLLNQN 133
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + W KGH G + NE D +A+
Sbjct: 134 PTIKVKWCKGHVGVEGNEVADALAQRG 160
>gi|302771379|ref|XP_002969108.1| hypothetical protein SELMODRAFT_409945 [Selaginella moellendorffii]
gi|300163613|gb|EFJ30224.1| hypothetical protein SELMODRAFT_409945 [Selaginella moellendorffii]
Length = 195
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 11 AYTDGACS----GNPGPGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAIKALTA 62
++DG+ GN GG+GV + Y+ + K + EL+ +++L
Sbjct: 23 IFSDGSYKCDGPGNQQHGGYGVYIPSQGVYQAHGRRPQQDLKRCSAITFELLGLLESLQM 82
Query: 63 LKY---------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+V +YTD SY + + + SD T+++I L+ +
Sbjct: 83 AIMLQEKGGGVRHHEVFVYTD-SYDSLTLLEMYMENSTYLSRHSDVSTMESIVLFAGMLR 141
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V +KGH NE D++A+ A + +
Sbjct: 142 C----NVHFCKVKGHDKVLGNEVADKLAKIGATLLEGQ 175
>gi|291484619|dbj|BAI85694.1| hypothetical protein BSNT_03277 [Bacillus subtilis subsp. natto
BEST195]
Length = 132
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPGP G G+ ++++G + S TN E +A I+ +
Sbjct: 4 EIYVDGASAGNPGPSGIGIFIKHEGIAESFSIPIGVHTNQEAEFLALIEGMKLCAT---- 59
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S + S +++ + + ++ + WI G
Sbjct: 60 --RGYQSVSFRTDSDIVERATELEMVKNKTFQPFVEEITRLKAAFPLFF---IKWIPG-- 112
Query: 130 GNQENEKVDRIARNAAV 146
++N+K D +A+ A
Sbjct: 113 --KQNQKADLLAKEAIR 127
>gi|322369393|ref|ZP_08043958.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
gi|320551125|gb|EFW92774.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
Length = 197
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 40/137 (29%), Gaps = 17/137 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIK--ALTALKYPC 67
Y DGA GNPGP G ++ G TNN+ E A I+
Sbjct: 71 LYFDGASRGNPGPAATGWVIVTSDGIAAEGGTRIGRATNNQAEYEALIEGLETARDYGFD 130
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + DS + K + K W
Sbjct: 131 SVDVKGDSQLIVKQVTGAW----------KTNNPELRERRVRVRELLEEFDK----WSLK 176
Query: 128 HAGNQENEKVDRIARNA 144
H + NE+ D++A A
Sbjct: 177 HVPREVNERADKLANEA 193
>gi|123967755|ref|YP_001008613.1| ribonuclease HI [Prochlorococcus marinus str. AS9601]
gi|123197865|gb|ABM69506.1| possible ribonuclease HI [Prochlorococcus marinus str. AS9601]
Length = 239
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/138 (47%), Positives = 91/138 (65%), Gaps = 5/138 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI---KALTALK 64
+ A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI + L K
Sbjct: 8 IEAATDGACSGNPGPGGWGGLIIFDDNSELEIGGSEQNTTNNRMELTAAIKTLEKLKTYK 67
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
L TDS YV +G+++WI W++NGWKTS K V+N+DLW K + + + +
Sbjct: 68 LKENFKLRTDSKYVIEGYTKWIINWKKNGWKTSSGKPVQNLDLWQKIDQLRINGLI-MEY 126
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGH+G+++N++VD+IA
Sbjct: 127 VKGHSGDKQNDRVDKIAT 144
>gi|2736044|gb|AAB94039.1| reverse transcriptase [Dugesiella sp.]
Length = 488
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYP 66
+ YTDG+ + + G ++ +G++ +G K T+ + E +A +KA
Sbjct: 244 LQIYTDGSKTSDGT--GAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKATMWFAEE 301
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
C + + ++T + ++DLYW K
Sbjct: 302 C--------QGNKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTK 353
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
GHAG NE DR A+ A +S + +
Sbjct: 354 GHAGQAGNEMADRAAKEAVISGQRYV 379
>gi|315303808|ref|ZP_07874301.1| ribonuclease HI [Listeria ivanovii FSL F6-596]
gi|313627820|gb|EFR96460.1| ribonuclease HI [Listeria ivanovii FSL F6-596]
Length = 132
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + ++ TN+ E +A L A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKADGIHEQLAIPLAVMTNHEAEFIAIKLGLEAALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + + ++D ++ + A V+ +
Sbjct: 62 FIRLYSDSKVAIEAIQKRHA---------KNPLFKHHLDEILQMSDPLALFFVEWRHV-- 110
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 111 ----SQNKQADQLARQAIKKQK 128
>gi|254974986|ref|ZP_05271458.1| putative ribonuclease [Clostridium difficile QCD-66c26]
gi|255092374|ref|ZP_05321852.1| putative ribonuclease [Clostridium difficile CIP 107932]
gi|255100458|ref|ZP_05329435.1| putative ribonuclease [Clostridium difficile QCD-63q42]
gi|255306399|ref|ZP_05350570.1| putative ribonuclease [Clostridium difficile ATCC 43255]
gi|255314114|ref|ZP_05355697.1| putative ribonuclease [Clostridium difficile QCD-76w55]
gi|255516792|ref|ZP_05384468.1| putative ribonuclease [Clostridium difficile QCD-97b34]
gi|255649893|ref|ZP_05396795.1| putative ribonuclease [Clostridium difficile QCD-37x79]
gi|306519986|ref|ZP_07406333.1| putative ribonuclease [Clostridium difficile QCD-32g58]
gi|328887606|emb|CAJ68297.2| putative ribonuclease [Clostridium difficile]
Length = 199
Score = 65.3 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 3/137 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G GV++ K E I + EK + + + A K +
Sbjct: 64 IEAYVDGSYEHSVKMYGSGVVIL-KNNEVIKTYSEKGKEKTLVSMRNVAGEIEASKIAMQ 122
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + F + G ++K+ + ++ + V +K H
Sbjct: 123 YCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEGTIAYKNFYDSIK--NKLNVKFTKVKAH 180
Query: 129 AGNQENEKVDRIARNAA 145
+GN+ NE+ D++A+ A
Sbjct: 181 SGNKYNEEADKLAKKAI 197
>gi|317122878|ref|YP_004102881.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
gi|315592858|gb|ADU52154.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
Length = 140
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+TDGA GNPGP G GV+L + + ++ TNN E A I L
Sbjct: 10 LHTDGAARGNPGPAGIGVVLIDPRGQVAERVARFIGTATNNVAEYTALITGLQRALEHGA 69
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ +Y+DS + + + + +D + A V
Sbjct: 70 RRLEVYSDSELMVRQLNGQYRV-------KNDGLKPLYRQVLDLVARFDAVRFV------ 116
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
H + N+ DR+A +
Sbjct: 117 -HVPRERNKDADRLANQGIDDAGER 140
>gi|301094364|ref|XP_002896288.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109683|gb|EEY67735.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 174
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 20/151 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKG------KEKIISGGEKETTNNRMELMAAIKALT 61
V AY DGA GNPG G G LL E G + + L
Sbjct: 34 RVVAYADGASRGNPGRSGCGALLMDPITGRVLATETKYVGDLETNNAAEYHGLMLALQLA 93
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V ++ DS + + + N +K + +
Sbjct: 94 QQHQATHVHVHMDSQLIVRQMMGQYRVKAANL-----RKLHQQCKELSAALPYVTF---- 144
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
H +EN + DR+A A + ++
Sbjct: 145 -----SHVAREENTEADRLANEAIDTVGARV 170
>gi|227543054|ref|ZP_03973103.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181276|gb|EEI62248.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 388
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
+ V + DG GNPG G G +++ + + + +S +TTNN E A I L A
Sbjct: 1 MLGVTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAA 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ DS V + S K + + +
Sbjct: 61 LELGATHCQVFMDSKLVVEQMSGRW----------KIKHPDMQAKAKIAHELINQFEQFS 110
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ ++N + D +A A +
Sbjct: 111 ILWVP----RKKNARADELANIAMDA 132
>gi|227488442|ref|ZP_03918758.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091656|gb|EEI26968.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 388
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
+ V + DG GNPG G G +++ + + + +S +TTNN E A I L A
Sbjct: 1 MLGVTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAA 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ DS V + S K + + +
Sbjct: 61 LELGATHCQVFMDSKLVVEQMSGRW----------KIKHPDMQAKAKIAHELINQFEQFS 110
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ ++N + D +A A +
Sbjct: 111 ILWVP----RKKNARADELANIAMDA 132
>gi|254386860|ref|ZP_05002147.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
gi|194345692|gb|EDX26658.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
Length = 246
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 14 DGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG GNPGP G+G ++ + TNN E I L A +
Sbjct: 55 DGGSRGNPGPAGYGSVVLDPATGETLAERAEYIGVATNNVAEYKGLIAGLKAARELA--- 111
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
D+ + + S+ + + W K L + + +V WI
Sbjct: 112 --PDAQVLVRMDSKLVVEQMSGRW---KIKHPDMKPLAAEAATVLPRSQVTYQWIP---- 162
Query: 131 NQENEKVDRIARNAAVSF 148
++N+ DR+A A +
Sbjct: 163 REQNKHADRLANEAMDAA 180
>gi|89099821|ref|ZP_01172693.1| ribonuclease H [Bacillus sp. NRRL B-14911]
gi|89085379|gb|EAR64508.1| ribonuclease H [Bacillus sp. NRRL B-14911]
Length = 135
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 17/140 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
+ Y DGA +GNPGP G G+ ++ G + S E +N+ E A I AL
Sbjct: 2 IEVYIDGASAGNPGPSGAGIFIKAGGTVERHSIPLGEMSNHEAEYHAFIHALEICLQSGY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V+ + K + + L + + WI
Sbjct: 62 RTVSFRTDSQLVNAAVEKEFV-----------KNPLYSSLLEKALGLSRQLDLFFMKWIP 110
Query: 127 GHAGNQENEKVDRIARNAAV 146
EN+ D +AR A
Sbjct: 111 S----SENKTADELARKAVR 126
>gi|242827039|ref|XP_002488756.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712148|gb|EED11575.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 473
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TDG+ N G V K + E L +++
Sbjct: 231 TIQFFTDGSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 288
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 289 RGDNPHEATIYTDNQAAIRATCQPGRSS-------GQYIIRRIVRHLGLLRDNRSRWRVR 341
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
L W+ GH G NEK D++A+ AA
Sbjct: 342 LQWVPGHEGVPGNEKADQLAKLAA 365
>gi|294498230|ref|YP_003561930.1| RNase H [Bacillus megaterium QM B1551]
gi|294348167|gb|ADE68496.1| RNase H [Bacillus megaterium QM B1551]
Length = 132
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--KYP 66
+ Y DGA +GNPGP G G+L++ G+ + TN+ E A + AL K
Sbjct: 2 IEVYIDGATAGNPGPSGAGILIKGNGEHHRYAIALGIMTNHEAEYHALLHALKICLEKKY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + +Q K + + + + + W+
Sbjct: 62 TSVSFRTDSQLVDRAMNQEYVKNKAFAPLLEEALKLSS-----------QFELFFIKWVP 110
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+N D++AR A
Sbjct: 111 S----SQNAGADQLARQAINQ 127
>gi|332670763|ref|YP_004453771.1| phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
gi|332339801|gb|AEE46384.1| Phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
Length = 404
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 9/140 (6%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + DG GNPGP G+G ++R G +++ E+ A +
Sbjct: 3 RRLVVEADGGSRGNPGPAGYGAVVRDAGTGDVLA--ERADFLGVASNNVAEYSGLVAGLR 60
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + D+ + SQ + + + W K + V W+
Sbjct: 61 AALAIDPDARLEVRMDSQLVIEQMRGTW---KIKHADMRRFADEVHALVDPTTVTWTWVP 117
Query: 127 GHAGNQENEKVDRIARNAAV 146
N DR+A A
Sbjct: 118 ----RARNAAADRLANLAMD 133
>gi|288556211|ref|YP_003428146.1| ribonuclease H [Bacillus pseudofirmus OF4]
gi|288547371|gb|ADC51254.1| ribonuclease H [Bacillus pseudofirmus OF4]
Length = 130
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIK--ALTALKY 65
+ Y DGA +G+PGP G G+ + YK S +N+ E A + + K
Sbjct: 2 IDVYIDGASAGDPGPSGAGIFINYKDGSVGHYSIPLGHMSNHEAEYEALLHALKICKEKG 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+V TDS + + + + + + + + E + W+
Sbjct: 62 FKQVSFRTDSQLIDQAVEK--------RYVKNKRYNQYLEEALVYIDEFDLFF---MKWV 110
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
++N+ D++AR A K
Sbjct: 111 PS----KQNKDADQLARRAIQQAK 130
>gi|310793466|gb|EFQ28927.1| hypothetical protein GLRG_04071 [Glomerella graminicola M1.001]
Length = 327
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 8 EVHAYTDGACSGNP---GPGGWGVLL--------RYKGKEKIISGGEKETTNNRMELMAA 56
EV + DGACSGN GG G + R+ + + G T+NR EL AA
Sbjct: 155 EVLVFVDGACSGNGTTVAVGGCGFVFNSQEGGSVRFPLEGLGVDGELYPMTSNRAELRAA 214
Query: 57 IKALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ AL+ + ++++ TDS YV G + W++ W + GW++S + VKN DLW +
Sbjct: 215 LGALSFRTWHGEGVERLVIATDSEYVATGATLWVRGWVEKGWRSSKGRPVKNRDLWEALL 274
Query: 113 EASAQHKVDLYWI-KGHAGNQENEKVDRIARNAAVS 147
+ + + + N + DR A+ AAV+
Sbjct: 275 RRVKELRGGGCEVSFWRIPREWNTEADRAAKEAAVA 310
>gi|307243896|ref|ZP_07526021.1| ribonuclease HI [Peptostreptococcus stomatis DSM 17678]
gi|306492718|gb|EFM64746.1| ribonuclease HI [Peptostreptococcus stomatis DSM 17678]
Length = 256
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 3/137 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ AY DG+ G GV++ GK + N A + ++
Sbjct: 120 TIEAYIDGSYEHASKTYGSGVVILQDGKILDTISNTGKNPNYVSMRNVAGEIEASILAMK 179
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + I+KW W I +EA + + +K
Sbjct: 180 YCIDRGYRDLLIYYDYEGIEKWCTGEW---KANKEGTIYYRQFCIEAMKKTNISFKKVKA 236
Query: 128 HAGNQENEKVDRIARNA 144
H+G++ N+ D++A+ A
Sbjct: 237 HSGDKYNDMADKLAKQA 253
>gi|296329505|ref|ZP_06871992.1| hypothetical protein BSU6633_00295 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674830|ref|YP_003866502.1| hypothetical protein BSUW23_10765 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153387|gb|EFG94249.1| hypothetical protein BSU6633_00295 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413074|gb|ADM38193.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 151
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPG G G+ ++++GK + S TN E +A I+ +
Sbjct: 4 EIYVDGASAGNPGLSGIGIFIKHEGKAESFSIPIGMHTNQEAEFLALIEGMKLCAK---- 59
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S + S +++ + + ++ + WI G
Sbjct: 60 --RGYQSVSFRTDSDIVERAAEFEMVKNKTFHPYVEEIIRLKAAFPLFF---IKWIPG-- 112
Query: 130 GNQENEKVDRIARNAAV-SFKNKI 152
++N+K D +A+ A + KN+I
Sbjct: 113 --KQNQKADHLAKEAIRLNDKNEI 134
>gi|226377711|ref|YP_002790760.1| putative ribonuclease H [Lactobacillus phage Lb338-1]
gi|225921489|gb|ACO37002.1| putative ribonuclease H [Lactobacillus phage Lb338-1]
Length = 250
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 9 VHAYTDGACS----------GNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMA-- 55
+ +TDG GN W + G SG E TN MEL A
Sbjct: 97 IRIFTDGGSRNSGYSLGGHLGNNDLAAWAFEAVYPDGTSYHASGAELGKTNQMMELEAFA 156
Query: 56 -AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
A + + ++ DS YV + + ++ +
Sbjct: 157 RACEFVINQHIKDPIMFILDSRYVLNPIQVGDLQKWADNGWEEERANKEYWQQIWNAYSQ 216
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
Q KV L W+KGH+ + N VD+++ A + K
Sbjct: 217 IDQ-KVYLKWVKGHSTTKGNNDVDKLSNEAMNALK 250
>gi|154287246|ref|XP_001544418.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408059|gb|EDN03600.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 362
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 51 RSQPSTDLYVFSDGSEQNLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 110
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 111 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 167
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 168 NVGLKWAPGHMGIEGNEEADRLAKRAVSS 196
>gi|126339318|ref|XP_001363597.1| PREDICTED: similar to pol protein [Monodelphis domestica]
Length = 1086
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 12 YTDGACSGN-PGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+C N G G+ + E I +G + + + A+ L +
Sbjct: 719 YTDGSCLRNESGILVAGYAI---TTTAEVIEAGHLPSAISAQQADLEAVTRACELAKGKR 775
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN-IDLWMKFVEASAQHKVDLYWIKG 127
V +YTDS Y + WQ G+ TS +KN + + + I G
Sbjct: 776 VNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEALLLPEAIAIIKIPG 835
Query: 128 H----AGN-QENEKVDRIARNAAVSF 148
H + + + N D+ A+ AA
Sbjct: 836 HSRENSPHAKGNALADQYAKEAARQL 861
>gi|242825941|ref|XP_002488542.1| hypothetical protein TSTA_109660 [Talaromyces stipitatus ATCC
10500]
gi|218712360|gb|EED11786.1| hypothetical protein TSTA_109660 [Talaromyces stipitatus ATCC
10500]
Length = 337
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 15/152 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKA 59
+ +TDG+ N G V K + E L +++
Sbjct: 8 PKRAKFFTDGSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRS 65
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
P + +YTD+ + Q + + + + ++ +
Sbjct: 66 QPCDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWR 118
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V L W+ GH G NEK D++A+ AAV +
Sbjct: 119 VRLQWVPGHEGVPGNEKADQLAKLAAVEATRR 150
>gi|1200142|emb|CAA65002.1| putative RNaseH [Streptomyces lincolnensis]
Length = 117
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 6 LRE-VHAYTDGACSGNPGPGGWGVLLRYKGK--EKIISGGEKETTNNRMELMAAIKALTA 62
+RE V A DGA GNPGP GW ++ + + +G + TNN EL A + L A
Sbjct: 1 MRERVVAACDGASKGNPGPAGWAWVVADDTETPTRWEAGALGKATNNVAELTALERLLAA 60
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ + DS Y K + W+ W++NGWKT+ K V N DL ++ E
Sbjct: 61 TDRDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANQDLVVRIDE 111
>gi|325479185|gb|EGC82282.1| ribonuclease HI [Anaerococcus prevotii ACS-065-V-Col13]
Length = 196
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 17/146 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM------ELMAAIKAL 60
+ AY DG+ + N G G + K E+ + + +
Sbjct: 58 DTIIAYVDGSYNLNEKIYGAGAVYITKDGEEELYATFTDDFYKHRNVAGEVKASELAIKK 117
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ K+++Y D + + W+ N T K ++
Sbjct: 118 ALDEKAKKIVIYHDYQGISSWANDE---WKANNDLTKSYKDFIKNARKN--------LEI 166
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
+KGH+ ++ N+ DR+A+ A
Sbjct: 167 GFVKVKGHSNDKYNDWADRLAKKGAQ 192
>gi|238854339|ref|ZP_04644681.1| putative ribonuclease HI [Lactobacillus jensenii 269-3]
gi|260665032|ref|ZP_05865882.1| ribonuclease HI [Lactobacillus jensenii SJ-7A-US]
gi|282931743|ref|ZP_06337228.1| ribonuclease H [Lactobacillus jensenii 208-1]
gi|238832961|gb|EEQ25256.1| putative ribonuclease HI [Lactobacillus jensenii 269-3]
gi|260561086|gb|EEX27060.1| ribonuclease HI [Lactobacillus jensenii SJ-7A-US]
gi|281304050|gb|EFA96167.1| ribonuclease H [Lactobacillus jensenii 208-1]
Length = 254
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 8 EVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
EV ++DG C + W L+ Y GK +GGE TNN+MEL I
Sbjct: 99 EVVIFSDGGCRNHGNIKGSHVQKNDKAAWAYLIEYDGKRVSKAGGEFGATNNQMELTGFI 158
Query: 58 KALTA----LKYPCKVLLYTDSSYVHKGFSQWIKK-WQQNGWKTSDKKTVKNIDLWMKFV 112
+A+ K + DS YV + ++ W+ NGWK S +
Sbjct: 159 QAMKRSLALKLNNKKTIFVLDSRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQEISR 218
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W GH N N VD+
Sbjct: 219 LLPQFKNAEFEWTHGHEDNYGNNFVDKALNVYMDKM 254
>gi|313122920|ref|YP_004033179.1| rnase hi [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279483|gb|ADQ60202.1| RNase HI [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 255
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 10 HAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
H +TDG C N W L+ Y G++ SGG TNN ME+ A +++
Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLES 155
Query: 60 LTALK----YPCKVLLYTDSSYVHKGFSQ------WIKKWQQNGWKTSDKKTVKNIDLWM 109
L L+ +L DS YV K S WIK WQ+ GWK +D V N +LW
Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215
Query: 110 KFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + A+ + + W+KGHA + N VD +
Sbjct: 216 EIAKEMAKFAQPEFEWVKGHANSAGNNFVDGLLNKYMDQM 255
>gi|104773382|ref|YP_618362.1| ribonuclease H1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116513363|ref|YP_812269.1| RNase H [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|103422463|emb|CAI97016.1| Ribonuclease H1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116092678|gb|ABJ57831.1| RNase HI [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325124987|gb|ADY84317.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 255
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 10 HAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
H +TDG C N W L+ Y G++ SGG TNN ME+ A +++
Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLES 155
Query: 60 LTALK----YPCKVLLYTDSSYVHKGFSQ------WIKKWQQNGWKTSDKKTVKNIDLWM 109
L L+ +L DS YV K S WIK WQ+ GWK +D V N +LW
Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215
Query: 110 KFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + A+ + + W+KGHA + N VD +
Sbjct: 216 EIAKEMAKFAQPEFEWVKGHANSAGNNFVDGLLNKYMDQM 255
>gi|154274438|ref|XP_001538070.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414510|gb|EDN09872.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 398
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 87 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGAC 146
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 147 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 203
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W GH G NE+ DR+A+ A S
Sbjct: 204 NLGLKWAPGHMGIGGNEEADRLAKRAVSS 232
>gi|169628993|ref|YP_001702642.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus ATCC
19977]
gi|169240960|emb|CAM61988.1| Putative phosphoglycerate mutase [Mycobacterium abscessus]
Length = 367
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPG G+G ++ + TNN E I L
Sbjct: 1 MK-VLVEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAE 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + S K A V
Sbjct: 60 AARLGATEVSVSMDSKLVVEQMSGRW----------KVKHPDLITLYQQAVTAAMQFESV 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
D WI + N+ DR+A A
Sbjct: 110 DYTWIP----RERNKHADRLANEAMD 131
>gi|76156706|gb|AAX27858.2| SJCHGC09332 protein [Schistosoma japonicum]
Length = 230
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 24 GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--PCKVLLYTDSSYVHKG 81
G+GV + E E TNNR E+ A I A+ + + TDS +
Sbjct: 98 AGYGVYWGPSHPWNVSERLEGEQTNNRAEIEAVICAIKQAHASGITHLGIVTDSKFTQNC 157
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ--HKVDLYWIKGHAGNQENEKVDR 139
++W K+W +N WK ++ + K + + +E A+ ++ + ++GH G NE+ D
Sbjct: 158 ATEWGKRWARNSWKLANGEDAKLKEPVKRLLELIAESGIEITWHHVRGHKGVHGNEEADC 217
Query: 140 IARNAAVS 147
+A A
Sbjct: 218 LANIGADK 225
>gi|76803222|ref|YP_331317.1| ribonuclease H I [Natronomonas pharaonis DSM 2160]
gi|76559087|emb|CAI50685.1| ribonuclease H I [Natronomonas pharaonis DSM 2160]
Length = 195
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCK 68
H Y DGA GNPGP G ++ S TNN+ E A I+AL A
Sbjct: 69 HIYFDGASRGNPGPAAIGWVIVTDDGIVAEGSERIGRATNNQAEYEALIEALAAAADYAF 128
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
KG SQ I K + W T+D + K +E + W H
Sbjct: 129 DEAVV------KGDSQLIVKQVRGEWDTNDPTLREKRVRVRKLLEEFS------EWSLDH 176
Query: 129 AGNQENEKVDRIARNA 144
+ N++ D +A A
Sbjct: 177 VPREINDRADDLANEA 192
>gi|146421522|ref|XP_001486706.1| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 25/163 (15%)
Query: 10 HAYTDGACSGNP----GPGGWGVLLRYKGKEKIISGGEKETTNN--------RMELMAAI 57
H Y DGAC N G+GV + R A I
Sbjct: 74 HIYIDGACKRNGMALQRKTGYGVFYGNGDVRNAAVSSSNADKLSGTNQRSELRALYHAII 133
Query: 58 KALTALKYPCKVLLYT---DSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ + YT DS YV + W KKW+ NGW+T+ K+ V
Sbjct: 134 NIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVFY 193
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + ++ GHAGN NE D++A AA
Sbjct: 194 LKEINERLANIGLPPVKIEYVPGHAGNHGNEMADKLANKAADE 236
>gi|257054785|ref|YP_003132617.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
gi|256584657|gb|ACU95790.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
Length = 383
Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 44/145 (30%), Gaps = 19/145 (13%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
R V DG GNPGP G+G ++R G TTNN E I L A
Sbjct: 3 RTVIVEADGGSRGNPGPAGYGAVVRDPDSGDVLAERQEGLGVTTNNVAEYRGLIAGLEAA 62
Query: 64 KY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V DS V + S K + AS +V
Sbjct: 63 AELGASAVEARLDSKLVVEQMSGRW----------KIKNAMLQPLALRVRELASQFDRVT 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
W+ N DR+A A
Sbjct: 113 YTWVP----RAHNAHADRLANEAMD 133
>gi|313903355|ref|ZP_07836747.1| ribonuclease H [Thermaerobacter subterraneus DSM 13965]
gi|313466443|gb|EFR61965.1| ribonuclease H [Thermaerobacter subterraneus DSM 13965]
Length = 504
Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 18/141 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+TDGA GNPGP G GV+L + I+ TNN E A I L
Sbjct: 366 LHTDGAARGNPGPAGIGVVLIGPDGAVAERIARFIGAATNNVAEYTALITGLQRALDRGA 425
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ +Y+DS + + + + K + + + +V +
Sbjct: 426 RRLDVYSDSELMVRQLNGQYRVK------NEGLKPLFEQAARLA----AQFERVRFIHVP 475
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ N + DR+A
Sbjct: 476 ----RERNREADRLANQGIDQ 492
>gi|154318074|ref|XP_001558356.1| hypothetical protein BC1G_03020 [Botryotinia fuckeliana B05.10]
gi|150843678|gb|EDN18871.1| hypothetical protein BC1G_03020 [Botryotinia fuckeliana B05.10]
Length = 260
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 29/172 (16%)
Query: 2 DSKHLREVHAYTDGACSGN---PGPGGWGVLLRYKGKEKI------ISGGEKETTNNRME 52
+ RE+ YTDG+C N G ++ K +G T+NR E
Sbjct: 76 RRTNPREILIYTDGSCLSNGLGGSRAGCSFVISPHHKLGFRLENSGPTGELHPQTSNRAE 135
Query: 53 LMAAIKALTALKY-------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
L A + AL + ++++ TDS YV G ++ I W Q GW+TS V N
Sbjct: 136 LRAVVAALEYRVWQGDSFGAWVRLIIATDSEYVVLGATERINGWIQRGWRTSTGTEVMNQ 195
Query: 106 DLWMKFVEAS-----------AQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
DLW + + H + + K + N + D A+ A
Sbjct: 196 DLWKRLIYYIKKAARPLRFSGPPHGTAVEFWK--IPREWNGEADAEAKRGAQ 245
>gi|183983294|ref|YP_001851585.1| hypothetical protein MMAR_3304 [Mycobacterium marinum M]
gi|183176620|gb|ACC41730.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 374
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 42/148 (28%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 1 MK-VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + K A ++
Sbjct: 60 AVKLGATEVSVLMDSKLVVEQMCGRW----------KVKHPDLVELHGQARELAGQFRRI 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI N DR+A A +
Sbjct: 110 SYAWIP----RARNAHADRLANEAMDAA 133
>gi|284991875|ref|YP_003410429.1| phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
gi|284065120|gb|ADB76058.1| Phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
Length = 363
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 20/147 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKA 59
++ DG GNPGP G+G L+R K G L+A ++A
Sbjct: 1 MKRFVVEADGGSRGNPGPAGYGALVRDATTGKVLAERAESVGRATNNVAEYGGLVAGLQA 60
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L V + DS V + S K A
Sbjct: 61 ALDLDPTADVEVRMDSKLVVEQMSGRW----------KVKHPDMQKLALQARQIARQLGS 110
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V W+ +N D +A +A
Sbjct: 111 VRYTWVP----RAQNGAADALANSAMD 133
>gi|218661797|ref|ZP_03517727.1| putative ribonuclease HI [Rhizobium etli IE4771]
Length = 212
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 5 HLRE----VHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+RE +H + DG GGW + R + GG +E+ NN MEL A +KA
Sbjct: 52 RMREAQHGLHIFVDGCYEPGSQHGGWAFVTYRDAVEIASGFGGVQESANNSMELTAVLKA 111
Query: 60 LTALKYPCK---VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-------TVKNIDLWM 109
+ +++DS Y KG + W+ NGWK S
Sbjct: 112 AIWINSEAAGEAATIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKA 171
Query: 110 KFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
++ S V + W KGH+G NE+ D +
Sbjct: 172 VDLQLSQNALVTVTWCKGHSGIAGNERADAL 202
>gi|325685289|gb|EGD27403.1| ribonuclease H1 [Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 255
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 10 HAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
H +TDG C N W L+ Y G++ SGG TNN ME+ A +++
Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSTSGGRFGATNNEMEMTAFLES 155
Query: 60 LTALK----YPCKVLLYTDSSYVHKGFSQ------WIKKWQQNGWKTSDKKTVKNIDLWM 109
L L+ +L DS YV K S WIK WQ+ GWK +D V N +LW
Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215
Query: 110 KFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + A+ + + W+KGHA + N VD +
Sbjct: 216 EIAKEIAKFAQPEFEWVKGHANSAGNNFVDGLLNKYMDQM 255
>gi|300811482|ref|ZP_07091976.1| ribonuclease HI [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497555|gb|EFK32583.1| ribonuclease HI [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 255
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 10 HAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
H +TDG C N W L+ Y G++ SGG TNN ME+ A +++
Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLES 155
Query: 60 LTALK----YPCKVLLYTDSSYVHKGFSQ------WIKKWQQNGWKTSDKKTVKNIDLWM 109
L L+ +L DS YV K S WIK WQ+ GWK +D V N +LW
Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215
Query: 110 KFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + A+ K + W+KGHA + N VD +
Sbjct: 216 EIAKEMAKFAKPEFEWVKGHANSAGNNFVDGLLNKYMDQM 255
>gi|224048666|ref|XP_002195379.1| PREDICTED: similar to polyprotein [Taeniopygia guttata]
Length = 1542
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSG-NPGP-GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ N G+ V KE I SG T+ + + A+ L ++
Sbjct: 1006 FTDGSSYVVNGKRHAGYAV---TTCKEVIESGPLPTNTSAQKAEIFALTRALELAKGKEI 1062
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ +EA KV + IK H
Sbjct: 1063 NIYTDSKYAFGIVHAHGAIWKERGLLNSQGKNIKHASEILRLLEAVQLPEKVAIMHIKAH 1122
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ NE DR A+ AA
Sbjct: 1123 QRINSELEEGNELADRKAKEAAR 1145
>gi|241895453|ref|ZP_04782749.1| ribonuclease H [Weissella paramesenteroides ATCC 33313]
gi|241871427|gb|EER75178.1| ribonuclease H [Weissella paramesenteroides ATCC 33313]
Length = 232
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 16/159 (10%)
Query: 6 LREVHAYTDGACSGNPG----------PGGWGVLLRYKGKEKII----SGGEKETTNNRM 51
+ + +TDG GW + + + SG + TNN M
Sbjct: 73 PNQYYIFTDGGSRNTGNTAGGHVKATDKAGWAIAIYHGSNLNEPVYTDSGADWGRTNNEM 132
Query: 52 ELMAAIKALTALKYPC-KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
E++A I AL V + +DS YV + W+ W NGW+ S +
Sbjct: 133 EMLALINALLQTAKVSTPVTIVSDSKYVLDTVTNWMYNWAANGWRKSSGEIANLKAWQQI 192
Query: 111 F-VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + ++ W+KGHA + N VD + +A
Sbjct: 193 YALIKPLAARLSFIWVKGHATSHGNITVDHLLNDAMDQL 231
>gi|240172442|ref|ZP_04751101.1| bifunctional RNase H/acid phosphatase [Mycobacterium kansasii ATCC
12478]
Length = 374
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 1 MK-VIIEADGGSRGNPGPAGYGAVVWTMDRSTVLAESKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q G + + + + ++
Sbjct: 60 AVKLGATEA-------TVLMDSKLVVEQMCGRWKVKHPDLVELHAQAQALA-RHFRRISY 111
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
W+ N DR+A A +
Sbjct: 112 GWVP----RSRNAYADRLANEAMDAA 133
>gi|189485702|ref|YP_001956643.1| putative ribonuclease HI [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287661|dbj|BAG14182.1| putative ribonuclease HI [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 227
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGG--EKETTNNRMELMAAIKALTALKYP 66
A+ DG+ G G+G ++ + K ISG + + EL + I+ + +
Sbjct: 97 EAFVDGSYIS--GVIGYGAIIYLGDEIKAEISGTVADTQFRQFGGELKSVIETIKWCQTN 154
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + Y + T K ++ + K++ +IK
Sbjct: 155 DVKKIRINYDYQGI-----------EKFATGKWKAGNDVSREYVDFIIKTKIKIEWRYIK 203
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
H GN +N+K D +A+ AA K
Sbjct: 204 SHTGNPKNDKADFLAKKAASLQK 226
>gi|148543907|ref|YP_001271277.1| RNase HI [Lactobacillus reuteri DSM 20016]
gi|184153303|ref|YP_001841644.1| ribonuclease H [Lactobacillus reuteri JCM 1112]
gi|227364817|ref|ZP_03848865.1| ribonuclease H [Lactobacillus reuteri MM2-3]
gi|325682558|ref|ZP_08162075.1| ribonuclease HI [Lactobacillus reuteri MM4-1A]
gi|148530941|gb|ABQ82940.1| RNase HI [Lactobacillus reuteri DSM 20016]
gi|183224647|dbj|BAG25164.1| ribonuclease H [Lactobacillus reuteri JCM 1112]
gi|227070161|gb|EEI08536.1| ribonuclease H [Lactobacillus reuteri MM2-3]
gi|324978397|gb|EGC15347.1| ribonuclease HI [Lactobacillus reuteri MM4-1A]
Length = 222
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 5 HLREVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELM 54
H + YTDG + W ++ K + + GE TNN+ME+
Sbjct: 63 HSDNILVYTDGGSRNHGNKLGQHVKADDKAAWAYFIQTKDQAYTGTAGEFGATNNKMEIT 122
Query: 55 AAIKALTA----LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWM 109
A I+ALT + DS YV + WQ+ GW T+ K V N LW
Sbjct: 123 ALIQALTKLLELGLQDQPITAILDSHYVLDPIMKGWLTNWQRRGWLTASGKPVANQKLWE 182
Query: 110 KFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ V Q + W KGHA N N KVD +
Sbjct: 183 EIVTLLPQFPNLHFDWTKGHATNAGNNKVDELLNKTMDQL 222
>gi|118586737|ref|ZP_01544174.1| ribonuclease H [Oenococcus oeni ATCC BAA-1163]
gi|118432825|gb|EAV39554.1| ribonuclease H [Oenococcus oeni ATCC BAA-1163]
Length = 158
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W ++ Y+ K+ I SG + TNN MELMA
Sbjct: 6 IKVYTDGGNRNTGNKPGQHVHERDLSAWAYIIEYEKKQCIASGFQFGATNNAMELMAVGS 65
Query: 59 ALTALKY-----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
A + K+ L +DS YV + + T ++ + + +
Sbjct: 66 AFRKITKTEELKKQKIELISDSHYVLDPMEKGWLEKWMK---TKKERPNFTMWQTLYPMY 122
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + +W+KGH N +VD + K
Sbjct: 123 LELKPYLIFHWVKGHKNTVGNLRVDELLNQEMDKHK 158
>gi|300783100|ref|YP_003763391.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
U32]
gi|299792614|gb|ADJ42989.1| putative bifunctional RNase H/acid phosphatase [Amycolatopsis
mediterranei U32]
Length = 402
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 10/138 (7%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
DG GNPGP G+G +++ + + E
Sbjct: 6 DGGSRGNPGPAGYGAVVKDSDGQVLAERKESLGVVTNNVAEYNGLIAGLAAAAELGASTV 65
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQE 133
D K + + K A+ +V WI +
Sbjct: 66 DVRMDSKLVVEQMSGRW------KIKHPGMQPLAERAKELAAGFSRVKYEWIP----RAQ 115
Query: 134 NEKVDRIARNAAVSFKNK 151
N DR+A A + K
Sbjct: 116 NSHADRLANEAMDAATGK 133
>gi|194468452|ref|ZP_03074438.1| ribonuclease H [Lactobacillus reuteri 100-23]
gi|194453305|gb|EDX42203.1| ribonuclease H [Lactobacillus reuteri 100-23]
Length = 222
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 16/158 (10%)
Query: 7 REVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
++ YTDG + W ++ K + + GE TNN+ME+ A
Sbjct: 65 DDILVYTDGGSRNHGNKLGQHVKADDKAAWAYFIQTKDQAYTGTAGEFGATNNKMEITAL 124
Query: 57 IKALTA----LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKF 111
IKALT + DS YV + WQ+ GW T+ K V N +LW +
Sbjct: 125 IKALTKLLELGFQAQPITAILDSHYVLDPIMKGWLTNWQRRGWLTAGGKPVANKELWEEI 184
Query: 112 VEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V Q + W KGHA N N KVD +
Sbjct: 185 VALLPQFPNLHFDWTKGHATNAGNNKVDELLNKTMDQL 222
>gi|78778588|ref|YP_396700.1| RNase HI [Prochlorococcus marinus str. MIT 9312]
gi|78712087|gb|ABB49264.1| RNase HI [Prochlorococcus marinus str. MIT 9312]
Length = 239
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 5/138 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI---KALTALK 64
+ A TDGACSGNPGPGGWG L+ + E I G E+ TTNNRMEL AAI + LT K
Sbjct: 8 IEAATDGACSGNPGPGGWGGLIIFDDNSELEIGGSEQNTTNNRMELTAAIKTLEKLTTYK 67
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
L TDS YV +G+++WI W++NGWKTS K V+N+DLW K + + + +
Sbjct: 68 LKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSAGKPVQNLDLWQKIDQLRINGLI-MEY 126
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGH+G+++N++VD+IA
Sbjct: 127 VKGHSGDKQNDRVDKIAT 144
>gi|52786082|ref|YP_091911.1| YpdQ [Bacillus licheniformis ATCC 14580]
gi|52348584|gb|AAU41218.1| YpdQ [Bacillus licheniformis ATCC 14580]
Length = 138
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL--T 61
K + V Y DGA +G+PGP G G+ ++ K + S +N+ E MA I+ +
Sbjct: 5 KTMP-VEVYIDGASAGDPGPSGLGIFIKDGQKTESFSLPAGSLSNHEAEFMALIEGMKLC 63
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A + V TDS V + K K + + +K
Sbjct: 64 AERNYRIVSFRTDSQIVERTADSE-------FVKNQAFKPYLDAIIRLKKDFDLFF---- 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+ WI + N+ D++A+ A +
Sbjct: 113 IKWIPSKS----NQAADKLAKKAIL 133
>gi|328767327|gb|EGF77377.1| hypothetical protein BATDEDRAFT_37452 [Batrachochytrium
dendrobatidis JAM81]
Length = 172
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 11 AYTDGACSGNPGP---GGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDG+C N P GG G+ Y G + A+ +
Sbjct: 28 VYTDGSCLNNGRPDATGGIGIWFGTESAYNGGMVYPFPSPTNNACELFAVCMALAVVQEQ 87
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L+ YV G + +++ + + ++ + V +
Sbjct: 88 SQLGTMELFEKL-YVFTGSQYVLMGARRSDRMHAYNTKLWDMFHILMDSFQDWGCLVTIA 146
Query: 124 WIKGHAGNQENEKVDRIAR 142
+ H G + N++ DRIAR
Sbjct: 147 KVAAHQGIRGNDEADRIAR 165
>gi|309356121|emb|CAP37788.2| CBR-RNH-1.3 protein [Caenorhabditis briggsae AF16]
Length = 150
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPCKVL 70
TDGA S N + ++ S TNNR EL A +A +
Sbjct: 15 TDGATSNN-----------DRNLDRSGSSAYGNQTNNRYELEAIREATRIASQVPDRHIS 63
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-----HKVDLYWI 125
+ TDS Y + W W+QNGW+TS + VKN +L KV L I
Sbjct: 64 INTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSGKKVTLKHI 123
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+ + N + DR+AR AA S
Sbjct: 124 SGHSNDYHNTEADRLARQAAAS 145
>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
Length = 1312
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 47/154 (30%), Gaps = 20/154 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ N G V L K G E+E+T EL AL L+ +
Sbjct: 1012 IAVYTDGSGL-NGRIGASTVCLSQGWKRNRTLGTEEESTVYAGELTGIRMALHRLRKETR 1070
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
F Q ++ + Q +V + WI H
Sbjct: 1071 ---------PATVFVDSEAAIQAVQNPRRPSGQYILDQIYYIVRRYNMQGRVQIRWIPAH 1121
Query: 129 AGNQENEKVDRIARNA----------AVSFKNKI 152
G NE D AR A + K +I
Sbjct: 1122 IGVPGNEAADEAAREGTQKAGEAICLAAAAKRQI 1155
>gi|226192573|pdb|2RPI|A Chain A, The Nmr Structure Of The Submillisecond Folding
Intermediate Of The Thermus Thermophilus Ribonuclease H
Length = 112
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 22/127 (17%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ + V +TDGA GNPGPG TTNNRMEL AAI+ L
Sbjct: 1 MNPSPRKRVALFTDGAALGNPGPG---------------------TTNNRMELKAAIEGL 39
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
ALK P +V LYTDS Y+ K F++ + W++ GW+T++ K VKN DLW + A A H+
Sbjct: 40 KALKEPAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR 99
Query: 120 VDLYWIK 126
V +++K
Sbjct: 100 VRFHFVK 106
>gi|156049903|ref|XP_001590913.1| hypothetical protein SS1G_07536 [Sclerotinia sclerotiorum 1980]
gi|154691939|gb|EDN91677.1| hypothetical protein SS1G_07536 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 319
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 33/174 (18%)
Query: 2 DSKHLREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKI------ISGGEKETTNNRME 52
+ E+ YTDGAC N GG G + K K + T+NR E
Sbjct: 135 RRTNPHEILIYTDGACLSNGLSNLRGGCGFIASPTHKVKFRLENTGPTDEPHPQTSNRAE 194
Query: 53 LMAAIKALTALKY-------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
L A I AL + ++++ TDS YV G ++ I+ W GW+TS K VKN
Sbjct: 195 LRAVIAALQYHYWQGDCLGSWTRLVIATDSEYVVLGATERIRGWITRGWRTSAGKPVKNQ 254
Query: 106 DLWM-------------KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
DLW + + V + I + N+ D A+ A
Sbjct: 255 DLWKKLIHQIQKLDEPSRCIYPPHGTSVSFWRIP----REWNQDADVEAKKGAE 304
>gi|187251579|ref|YP_001876061.1| ribonuclease HI [Elusimicrobium minutum Pei191]
gi|186971739|gb|ACC98724.1| Ribonuclease HI [Elusimicrobium minutum Pei191]
Length = 194
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 19/151 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTAL 63
++ V DG GNPGPG +++ + I TNN E A + A A
Sbjct: 1 MK-VIINVDGGSRGNPGPGASAYVIKDAKGKIIAQEGVFLGICTNNEAEFKALLFAFGAA 59
Query: 64 KY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +Y DS + +Q + K + +A V
Sbjct: 60 AKLKATHIQIYADSQLLV----------KQFLGEYKIKSPNLVPIMEEIRKKAKPFSSVQ 109
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ H ++N++ D++A A +
Sbjct: 110 I----AHVPREKNKEADKLANIAMDKATKPV 136
>gi|118617021|ref|YP_905353.1| bifunctional RNase H/acid phosphatase [Mycobacterium ulcerans
Agy99]
gi|118569131|gb|ABL03882.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 374
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 1 MK-VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + K A ++
Sbjct: 60 AVKLGATEVSVLMDSKLVVEQMCGRW----------KVKHPDLVELHGQARELAGQFRRI 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI N D++A A +
Sbjct: 110 SYAWIP----RARNAHADQLANEAMDAA 133
>gi|130596|sp|P03371|POL_EIAVY RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1145
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 620 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 673
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 674 VNIVTDSYYCWKNITEGLGLE------------GPQNPWWPIIQNIREKEIVYFAWVPGH 721
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 722 KGIYGNQLADEAAK 735
>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
Length = 1682
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 17/145 (11%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELM----AAIKALTALKYP 66
+TDG+ G G G + + E +
Sbjct: 1399 IFTDGSKIG--GKVGAALSIWKGDTETKTRKLALSNYCTVYQAELLALCVATTEVRKSKS 1456
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+Y+DS + + + + V L+WIK
Sbjct: 1457 KSFGVYSDSMSALQTITNY-----------DSPHPLAVEARQNIKASLLQGKAVTLHWIK 1505
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
HAG + NE+ D +A+ AA + + +
Sbjct: 1506 AHAGLKGNERADGLAKEAAENSRKR 1530
>gi|290890805|ref|ZP_06553872.1| hypothetical protein AWRIB429_1262 [Oenococcus oeni AWRIB429]
gi|290479577|gb|EFD88234.1| hypothetical protein AWRIB429_1262 [Oenococcus oeni AWRIB429]
Length = 158
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 9 VHAYTDGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG G W ++ Y+ K+ I SG TNN MELMA
Sbjct: 6 IKVYTDGGNRNTGNKPGQHVHERDLSAWAYIIEYEKKQYIASGFHFGATNNAMELMAVGS 65
Query: 59 ALTALKY-----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
A + K+ L +DS YV + + T ++ + + +
Sbjct: 66 AFRKITKTEELKKQKIELISDSHYVLDPMEKGWLEKWMK---TKKERPNFTMWQTLYPMY 122
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + +W+KGH N +VD + K
Sbjct: 123 LELKPYLIFHWVKGHKNTVGNLRVDELLNQEMDKHK 158
>gi|256375028|ref|YP_003098688.1| phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
gi|255919331|gb|ACU34842.1| Phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
Length = 391
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 20/146 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
+R V DG GNPGP G+G ++ +G + TNN E I L A
Sbjct: 1 MR-VLVEADGGSRGNPGPAGYGAVVLDEGGDTVLAERFEAIGVATNNVAEYRGLIAGLRA 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + S + A V
Sbjct: 60 AAELGATEVDVRMDSKLVVEQMSGRWQIK----------HPAMKPLAAEAKELAGDFESV 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
WI + N++ D++A +A
Sbjct: 110 TYGWIP----RERNKRADKLANDAMD 131
>gi|190344329|gb|EDK35985.2| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 10 HAYTDGACSGNP----GPGGWGVLLRYKGKEK----IISGGEKETTNNRMELMAAIKALT 61
H Y DGAC N G+GV + + TN R EL A A+
Sbjct: 74 HIYIDGACKRNGMASQRKTGYGVFYGNGDVRNAAVSSSNADKLSGTNQRSELRALYHAII 133
Query: 62 ALKYPCK-------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSD----------KKTVKN 104
+ ++TDS YV + W KKW+ NGW+T+ K+ V
Sbjct: 134 NIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVFY 193
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + ++ GHAGN NE D++A AA
Sbjct: 194 LKEINERLANIGLPPVKIEYVPGHAGNHGNEMADKLANKAADE 236
>gi|262163741|ref|ZP_06031481.1| ribonuclease HI [Vibrio mimicus VM223]
gi|262027721|gb|EEY46386.1| ribonuclease HI [Vibrio mimicus VM223]
Length = 119
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+Y+DS Y KGF+ W+ W+ GW+ +DKK VKN LW + E S++ V+++ +K H+G
Sbjct: 42 IYSDSDYCVKGFNIWMDDWKGRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVKAHSG 101
Query: 131 NQENEKVDRIARNAAVS 147
+ NE+ D +A AA +
Sbjct: 102 IEGNERADLLAVEAAEA 118
>gi|153003635|ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|152027208|gb|ABS24976.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 254
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 14/143 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ YTDGA GNPGP G G ++ + E+TNN E M I L K
Sbjct: 122 KRTRLYTDGAARGNPGPAGAGAVIVSPDGHIVAKVGKFLGESTNNVAEYMGLILGLRRAK 181
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
S+ + K + + D + ++ + +V
Sbjct: 182 AMGI------KELEVFADSELLVKQLAGDYAVKAEHLRPLHDEAQQLLKGFSWIQVR--- 232
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
H +EN + D ++ A
Sbjct: 233 ---HIPREENGQADAMSNRAIDE 252
>gi|226360320|ref|YP_002778098.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus B4]
gi|226238805|dbj|BAH49153.1| ribonuclease H/acid phosphatase [Rhodococcus opacus B4]
Length = 368
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 40/144 (27%), Gaps = 19/144 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLR---YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
V DG GNPGP G+G ++ TNN E I L A
Sbjct: 5 RVVVEADGGSRGNPGPAGYGTVVFAAADGAVLAERKESLGTVTNNVAEYRGLIAGLEAAA 64
Query: 65 YP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
V + DS V + S K A + V
Sbjct: 65 EVGASGVDVRMDSKLVVEQMSGRW----------KVKHPDMIPLQRRASELARQFNSVTY 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
WI EN DR+A A
Sbjct: 115 TWIP----RAENAHADRLANEAMD 134
>gi|9626532|ref|NP_056902.1| pol polyprotein [Equine infectious anemia virus]
gi|2801512|gb|AAC82600.1| pol polyprotein [Equine infectious anemia virus]
gi|2905988|gb|AAC03761.1| pol [Equine infectious anemia virus]
Length = 1138
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 613 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 666
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 667 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 714
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 715 KGIYGNQLADEAAK 728
>gi|3248895|gb|AAC24015.1| polymerase polyprotein [Equine infectious anemia virus]
gi|3248902|gb|AAC24021.1| polymerase polyprotein [Equine infectious anemia virus]
Length = 1146
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 621 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 674
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 675 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 722
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 723 KGIYGNQLADEAAK 736
>gi|92118354|ref|YP_578083.1| ribonuclease H [Nitrobacter hamburgensis X14]
gi|91801248|gb|ABE63623.1| ribonuclease H [Nitrobacter hamburgensis X14]
Length = 128
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 33 KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQN 92
+ GG ++TTNNRM++ AAI ALT L C V +YTDS Y+ KG +
Sbjct: 9 GNPPINLWGGGRDTTNNRMKMTAAIVALTVLPPACGVTIYTDSQYLQKGMT-LWMAGWTR 67
Query: 93 GWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V N DLW ++ V W++GH G+ NE+ D +A
Sbjct: 68 KDFRRKDGLVPNADLWRTLDALASGRTVTWSWLRGHNGHAGNERADGLASEGRRK 122
>gi|189212619|gb|ACD84902.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKLPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 TIQHEKGHQPINTSIHTEGNALADKLATQG 175
>gi|261749220|ref|YP_003256905.1| ribonuclease HI [Blattabacterium sp. (Periplaneta americana) str.
BPLAN]
gi|261497312|gb|ACX83762.1| ribonuclease HI [Blattabacterium sp. (Periplaneta americana) str.
BPLAN]
Length = 99
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKA-LTAL 63
+++H YTDG+ GNPGPGG+ + + K++S G + TTNNRMEL+A I
Sbjct: 3 KKIHIYTDGSSKGNPGPGGYAIFIEVVGTTYRKVLSEGFRYTTNNRMELLAVIVGLEKIT 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD 98
K ++++TDS YV + +
Sbjct: 63 KKKQNIVVFTDSKYVVNTIQKNWIYQWKKNNFYKK 97
>gi|167749037|ref|ZP_02421164.1| hypothetical protein ANACAC_03818 [Anaerostipes caccae DSM 14662]
gi|167651659|gb|EDR95788.1| hypothetical protein ANACAC_03818 [Anaerostipes caccae DSM 14662]
Length = 577
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 20/154 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-------EKETTNNRMELMAAIKA 59
E+ AY DG+ + +G++ + GKE SG E ++ A
Sbjct: 69 NEIIAYVDGSYNDITKEVSYGMVTIHNGKETYFSGKVEEKDLAEMHNVAGEIKGAEAAMR 128
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+++Y D + K + K D F S + K
Sbjct: 129 YAIKNDYEKLVIYHDYEGISKWCTGEW-----------KAKKKGTQDYKELFENVSKKLK 177
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA--VSFKNK 151
V+ ++GH+G++ N+ D +A+ K++
Sbjct: 178 VEFVKVQGHSGDKYNDIADMLAKKVIFGEEAKDQ 211
>gi|2708267|gb|AAB92394.1| putative reverse transcriptase [Drosophila subobscura]
Length = 675
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 21/141 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP-- 66
+ +TDG+ N GG + + S + + + AIK +
Sbjct: 395 IQIFTDGSKLDNKVGGG----IYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQELT 450
Query: 67 ---CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ +Y+DS K + E + Q + L
Sbjct: 451 PEATYINIYSDSQAAIKSLNAITTSSATVANCRKSL------------HEMAYQFVISLI 498
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W+ GH + N D +AR
Sbjct: 499 WVPGHQDIEGNCIADELARAG 519
>gi|295703581|ref|YP_003596656.1| RNase H [Bacillus megaterium DSM 319]
gi|294801240|gb|ADF38306.1| RNase H [Bacillus megaterium DSM 319]
Length = 133
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--KYP 66
+ Y DGA +GNPGP G G+L++ G+ + TN+ E A + AL K
Sbjct: 3 IEVYIDGATAGNPGPSGAGILIKGNGEHHRYAIALGTMTNHEAEYHALLHALKICLEKKY 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + +Q K + + + + + WI
Sbjct: 63 TSVSFRTDSQLVDRAMNQEYVKNKAFAPLLEEALKLSS-----------QFELFFIKWIP 111
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+N D++AR A
Sbjct: 112 S----SQNAGADQLARQAINQ 128
>gi|189212629|gb|ACD84907.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLFLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|9929869|dbj|BAB12110.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 623 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDIRDKQ 676
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 677 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 724
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 725 KGIYGNQLADEAAK 738
>gi|155370673|ref|YP_001426207.1| hypothetical protein FR483_N575L [Paramecium bursaria Chlorella
virus FR483]
gi|155123993|gb|ABT15860.1| hypothetical protein FR483_N575L [Paramecium bursaria Chlorella
virus FR483]
Length = 164
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
KH +HAYTD + G G G Y +K + + NR EL A +
Sbjct: 12 HKHSNAIHAYTDASIR--QGKAGIGF---YSPAKKYAARVNEPRDINRAELGAIFAGIYL 66
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ +L+++DS + + + + ++ + A V +
Sbjct: 67 TEQDLDILIFSDSQNALNSITAY------------KRTKYDKLAKFVFELAAERSGNVFV 114
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+K H+G NE DR+A
Sbjct: 115 AKVKAHSGVPGNEAADRLAAAG 136
>gi|15891752|ref|NP_357424.1| ribonuclease H [Agrobacterium tumefaciens str. C58]
gi|15160220|gb|AAK90209.1| ribonuclease H [Agrobacterium tumefaciens str. C58]
Length = 157
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI----ISGGEKETTNNRMELMAAIKALTALK 64
+H +TDG+ GGW ++ G + + G + + ++ A+ + A
Sbjct: 5 LHIFTDGSFDDATRSGGWAFVVHEGGDQVHSATGKAAGASNNSFEVLAVLNAMSWVAAEA 64
Query: 65 YPCKVLLYTDS--------SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
V L+TD+ Y + K+ N I + +
Sbjct: 65 PTRDVTLWTDAVHVIEGCRRYRAIWRNNGWKRITPNQRARRRPIPDSEIWQQLDKLLERH 124
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H V + W KGH+G NE D +AR
Sbjct: 125 PH-VAVEWCKGHSGLVGNEHADALAR 149
>gi|227544970|ref|ZP_03975019.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
gi|300909999|ref|ZP_07127459.1| ribonuclease H [Lactobacillus reuteri SD2112]
gi|227185081|gb|EEI65152.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
gi|300892647|gb|EFK86007.1| ribonuclease H [Lactobacillus reuteri SD2112]
Length = 222
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 16/156 (10%)
Query: 9 VHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG + W ++ K + + GE TNN+ME+ A I+
Sbjct: 67 ILVYTDGGSRNHGNKLGQHVKADDKAAWAYFIQTKDQAHTGTAGEFGATNNKMEITALIQ 126
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVE 113
ALT + DS YV + WQ+ GW T+ K V N LW + V
Sbjct: 127 ALTKLLELGLQDQPITAILDSHYVLDPIMKGWLTNWQRRGWLTAGGKPVANQKLWEEIVT 186
Query: 114 ASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
Q + W KGHA N N KVD +
Sbjct: 187 LLPQFPNLHFDWTKGHATNAGNNKVDELLNKTMDQL 222
>gi|307593403|gb|ADN65591.1| pol protein [Simian foamy virus-gorilla]
Length = 1141
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 598 YTDGSAIRSPDPTKSHNAGMGIVQVKFSPELQVINQWSIPLGNHTAQMAEIAAVEFACKK 657
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K++ W E + +
Sbjct: 658 ALKITGPVLIITDSFYVAESTNKELPYWKSNGFVNNKKKPLKHVSKWKSIAECLSLKPDI 717
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 718 TIQHERGHQPIYTSIHTEGNALADKLATQG 747
>gi|83584387|gb|ABC24970.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 877 ISVYSDGSHTGQG--AGYGYAIYYGSILVTQGQGPAGPRTEVYDAEIMGAVEGLRAAVGL 934
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 935 PCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVR 994
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 995 VSWVPGHTGIAGNELADRLAKQGA 1018
>gi|83584378|gb|ABC24964.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 877 ISVYSDGSHTGQG--AGYGYAIYYGSILVTQGQGPAGPRTEVYDAEIMGAVEGLRAAVGL 934
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 935 PCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVR 994
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 995 VSWVPGHTGIAGNELADRLAKQGA 1018
>gi|189490395|ref|YP_001956963.1| putative RnhA [Pseudomonas phage 201phi2-1]
gi|164609460|gb|ABY63069.1| hypothetical RnhA [Pseudomonas phage 201phi2-1]
Length = 486
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS---------------------------- 40
+ YTDG+ N GWGV Y +K +S
Sbjct: 10 IVLYTDGSFQKN--VAGWGVH-GYTYHDKPMSSKASTKQQPTAEGYKEVALDETCTVIEF 66
Query: 41 -----GGEKETTNNRMELMAAIKALT--ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNG 93
E TNN EL AAI+ +++ DS YV KG +QW+ KW +
Sbjct: 67 YDAFGKVEGRATNNTAELTAAIEGFKLAFESGAQSLVMRPDSEYVIKGLTQWVHKWIKAN 126
Query: 94 WKTSDKKTVKNIDLWMKFVEASAQH-----KVDLYWIKGHAGNQENEKVDRIA 141
W D +N +LW+ +E + K+ + W+KGH+ + N+K D+ A
Sbjct: 127 WLKPDGTPRENKELWLDLLEQKKRWDDRGYKLKIEWVKGHSNDIGNDKADQNA 179
>gi|170042793|ref|XP_001849097.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167866254|gb|EDS29637.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 186
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 9 VHAYTDGACSGNPGPGGWG---VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V+ YTDG+ GN V +SG + AI+
Sbjct: 21 VYVYTDGSWEGNGTAAACAGLVVYFGEGHALNAVSGRATNNCGEFLAAALAIRLTKQQGI 80
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-----HKV 120
++ + TDS ++ ++W+ W++N WK S K VKN + + + K+
Sbjct: 81 K-RLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQELAEKSIKI 139
Query: 121 DLYWIKGHAGNQENEKVDR 139
H NE+ D
Sbjct: 140 KWNHADAHCVILGNERADA 158
>gi|189212607|gb|ACD84896.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPNPTKSNNAGMGIVYATYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAQSANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|108756881|ref|YP_633866.1| ribonuclease H [Myxococcus xanthus DK 1622]
gi|108460761|gb|ABF85946.1| ribonuclease H [Myxococcus xanthus DK 1622]
Length = 147
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKA 59
DS+ + Y+DGA GNPGP G G +L + TNN E M +
Sbjct: 10 DSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNCAEYMGLLLG 69
Query: 60 LTALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
L + +V ++ DS + + + E + +
Sbjct: 70 LKHAQSLGAREVEVFADSELLIRQLGGRYQV---------------KSPTLKPLYEEARK 114
Query: 118 HKVDLYWIK-GHAGNQENEKVDRIARNAAVS 147
+K H +N + D ++ A
Sbjct: 115 LLKGFTKVKLHHVPRAQNAEADEMSNRAIDE 145
>gi|9929862|dbj|BAB12104.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 623 ITIYTDGGKQN--GEGIAAYVTSNGKTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 676
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS Y K ++ + W + V W+ GH
Sbjct: 677 INIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 724
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 725 KGIYGNQLADEAAK 738
>gi|183222197|ref|YP_001840193.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912251|ref|YP_001963806.1| ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776927|gb|ABZ95228.1| Ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780619|gb|ABZ98917.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 137
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
Y DG+ GNPGP GV + + +S TNN E A + +
Sbjct: 9 VYCDGSSRGNPGPAAIGVSFQNNEGMEFHFLSEKIGNATNNVAEWNALSRGMEEAIRQSI 68
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K+ DS V K K ++ K ++
Sbjct: 69 KKIKFRLDSELVVKQMKGEYKVKNKDLMVFKTKCDQLKNSFESFDIQY------------ 116
Query: 127 GHAGNQENEKVDRIARNAAVS 147
++N + D++A A S
Sbjct: 117 --IPREQNARADQLANFAQDS 135
>gi|291519893|emb|CBK75114.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Butyrivibrio fibrisolvens 16/4]
Length = 217
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 2/139 (1%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+L V+A+TDG+ + G G+G L Y E I +
Sbjct: 76 NLPPVYAFTDGSYNIATGVYGFGGFLHYSDTEDDIEIRGNGNDPEEAVSRNVAGEVHGAV 135
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + + + + ++KK ++ ++ + + KV+
Sbjct: 136 AAMHKAVELGLKELTLFYDYEGIEKWPLRYWKTNKK--ISMFYVEEYDKIKDKLKVNFVH 193
Query: 125 IKGHAGNQENEKVDRIARN 143
+K H G NE D++A+
Sbjct: 194 VKAHTGIPGNEAADKMAKA 212
>gi|83584381|gb|ABC24966.1| reverse transcriptase [Monascus pilosus]
Length = 1183
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 879 ISVYSDGSHTGQG--AGYGYAIYYGSILVTQGQGPSGPRTEVYDAEIMGAVEGLRAAVGL 936
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 937 PCTAYANQLNIFLDNLAAASLLADGRPAPHRRHLTDTFHQLSTQWLSLPYILASPRRPVR 996
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 997 VSWVPGHTGIAGNELADRLAKQGA 1020
>gi|154283217|ref|XP_001542404.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410584|gb|EDN05972.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 375
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 6/149 (4%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N +G ++ K+ ++ + A
Sbjct: 64 RSQPSTDLYVFSDGSERNLDNSRQVSYGFIVCQGNKQLASFSAALSPMSHVFDAEAVGAC 123
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ D S ++ + + + + QH
Sbjct: 124 RALECTVKLLPCVTEDGSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 180
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 181 NVGLKWAPGHMGIEGNEEADRLAKQAVSS 209
>gi|54023608|ref|YP_117850.1| bifunctional RNase H/acid phosphatase [Nocardia farcinica IFM
10152]
gi|54015116|dbj|BAD56486.1| putative phosphoglycerate mutase [Nocardia farcinica IFM 10152]
Length = 406
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 42/144 (29%), Gaps = 19/144 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALTALK 64
+V DG GNPGP G+G ++ TNN E I L A
Sbjct: 5 KVIVEADGGSRGNPGPAGYGAVVFDADHVAVLAERRESVGIATNNVAEYRGLIAGLEAAA 64
Query: 65 YPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
V + DS V + S K +D+ V
Sbjct: 65 ELGARTVDVRMDSKLVVEQMSGRWKVKHAAMIPLADRARRLVAG----------FDAVTF 114
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
WI +N DR+A A
Sbjct: 115 TWIP----RAQNAHADRLANEAMD 134
>gi|289423780|ref|ZP_06425575.1| ribonuclease H [Peptostreptococcus anaerobius 653-L]
gi|289155819|gb|EFD04489.1| ribonuclease H [Peptostreptococcus anaerobius 653-L]
Length = 236
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ +++ AY DG+ + G G G+++ K + + N A + A+
Sbjct: 98 NSQKIEAYVDGSFDSSKGTYGSGIVIINDNKVVETISRKGQNQENISMRNVAGEIEGAMI 157
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ ++ I+KW WKT+ + + + + +V+ Y
Sbjct: 158 AMEYAIENGYNTLDLYFDYNGIEKWCTGEWKTNKEG---TKNYKQFYDGIKNRLRVNFYK 214
Query: 125 IKGHAGNQENEKVDRIARN 143
+K H+G NE D++A+
Sbjct: 215 VKAHSGVDYNELADKLAKE 233
>gi|145479397|ref|XP_001425721.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392793|emb|CAK58323.1| unnamed protein product [Paramecium tetraurelia]
Length = 321
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 48/145 (33%), Gaps = 19/145 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALKY--P 66
Y DGA NPGP G G+ L K K K I+ + TNN E +A +
Sbjct: 189 TLYFDGASKSNPGPAGAGIALFDKMKLIKEITQPLGKQTNNVAEFLALFFGIRYTLNLGI 248
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS V G + K A + +K
Sbjct: 249 NFLECFGDSKLVIDGMNS---------------KINFKQQHLEDIRVAICDYAQLFKKVK 293
Query: 127 -GHAGNQENEKVDRIARNAAVSFKN 150
H +N+ D++A AA K
Sbjct: 294 YTHISRDQNQIADKLASTAAQIQKK 318
>gi|300813995|ref|ZP_07094288.1| ribonuclease HI [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511889|gb|EFK39096.1| ribonuclease HI [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 197
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 13/142 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKE----TTNNRMELMAAIKALTA 62
E AY DG+ + +GV + + + S + N E+ A+KA+
Sbjct: 64 DEFIAYVDGSYRNSDKSFSYGVYIFNERESYSFSKRFHDEDSTMRNVCGEIKGAMKAMEV 123
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +LY Y I F + KV
Sbjct: 124 SLEKNKKVLYLHYDYEGIRAWPQGNW---------KTNKEGTISYKNYFDSIKDRLKVIF 174
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+K H+G + NE VD++A+ A
Sbjct: 175 VKVKAHSGVEFNELVDKLAKEA 196
>gi|189212635|gb|ACD84910.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPMNTSIHTEGNALADKLATQG 175
>gi|187969384|gb|ACD44835.1| pol protein [Simian foamy virus]
Length = 335
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPNPTKSNNAGMGIVYATYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAQSANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|83584384|gb|ABC24968.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 877 ISVYSDGSHTGQG--AGYGYAIYYGSILVTQGQGPAGPRTEVYDAEIMGAVEGLRAAVGL 934
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 935 PCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSTRWLSLPYILASPRRPVR 994
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 995 VSWVPGHTGIAGNELADRLAKQGA 1018
>gi|218184677|gb|EEC67104.1| hypothetical protein OsI_33899 [Oryza sativa Indica Group]
Length = 323
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPCK 68
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 185 LHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGF 244
Query: 69 --VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++Y DS V + W+T ++ ++ K E +++
Sbjct: 245 KKIIVYGDSQLVCYQV--------KGTWQTKNQNMMELCKEVRKLKENFVSFEIN----- 291
Query: 127 GHAGNQENEKVDRIARNAAV 146
H + N + DR A A
Sbjct: 292 -HIRREWNAEADRQANIAIT 310
>gi|126695558|ref|YP_001090444.1| ribonuclease HI [Prochlorococcus marinus str. MIT 9301]
gi|126542601|gb|ABO16843.1| possible ribonuclease HI [Prochlorococcus marinus str. MIT 9301]
Length = 239
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 68/138 (49%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAI---KALTALK 64
+ A TDGACSGNPGPGGWG L+ + K E I G E+ TTNNRMEL AAI + L K
Sbjct: 8 IEAATDGACSGNPGPGGWGGLIIFDDKSELEIGGSEQNTTNNRMELTAAIKTLEKLKTFK 67
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
L TDS YV +G+++WI W++NGWKTS K+V+N+DLW K + V + +
Sbjct: 68 LKENFKLRTDSKYVIEGYTKWIINWKKNGWKTSSGKSVQNLDLWQKIDQLRINGLV-MEY 126
Query: 125 IKGHAGNQENEKVDRIAR 142
+KGH+G+++N++VD+IA
Sbjct: 127 VKGHSGDKQNDRVDKIAT 144
>gi|115482348|ref|NP_001064767.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
gi|113639376|dbj|BAF26681.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|222612954|gb|EEE51086.1| hypothetical protein OsJ_31786 [Oryza sativa Japonica Group]
Length = 323
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPCK 68
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 185 LHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGF 244
Query: 69 --VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++Y DS V + W+T ++ ++ K E +++
Sbjct: 245 KKIIVYGDSQLVCYQV--------KGTWQTKNQNMMELCKEVRKLKENFVSFEIN----- 291
Query: 127 GHAGNQENEKVDRIARNAAV 146
H + N + DR A A
Sbjct: 292 -HIRREWNAEADRQANIAIT 310
>gi|15827864|ref|NP_302127.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae TN]
gi|221230341|ref|YP_002503757.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae Br4923]
gi|3150239|emb|CAA19219.1| hypothetical protein MLCB1243.38 [Mycobacterium leprae]
gi|13093416|emb|CAC30588.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933448|emb|CAR71732.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 371
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E A I L
Sbjct: 1 MK-VIIEADGGSRGNPGPAGYGAVVWIADRSAVLTETKQAIGRATNNVAEYRALIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + + + V
Sbjct: 60 AVKMGATEA-------EVLMDSKLVVEQMSGRWKVKHPDLIELYVHAQTLASRLA-SVSY 111
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WI N + DR+A A +
Sbjct: 112 TWIP----RTRNSRADRLANEAMDAA 133
>gi|189212605|gb|ACD84895.1| reverse transcriptase [Simian foamy virus]
gi|189212611|gb|ACD84898.1| reverse transcriptase [Simian foamy virus]
gi|189212639|gb|ACD84912.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|189212649|gb|ACD84917.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSHNAGMGIVHVKYTPELQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKVSGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 TIQHEKGHQPLNTSIHTEGNALADKLATQG 175
>gi|307297485|ref|ZP_07577291.1| ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916745|gb|EFN47127.1| ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
Length = 220
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKE---TTNNRMELMAAI 57
+ ++ VH + DG+ N G+GV ++ EK I+G +E N E+ I
Sbjct: 80 NGRNYDGVHLFVDGSFMDN--KVGYGVLVITENQIEKRINGCLRENLEMKNVTGEIEGVI 137
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+AL Y+ + +N + +K
Sbjct: 138 RALEYCMRKGYRKATIHYDYMGLRSWAEGEWKAKNKLTRKYVERLKQFSS---------- 187
Query: 118 HKVDLYWIKG--HAGNQENEKVDRIARNAAVSF 148
++D+ W+K H G NE D++A+ A
Sbjct: 188 -QIDIEWVKARSHIGETFNEIADKLAKKAVEDC 219
>gi|282883350|ref|ZP_06291943.1| ribonuclease H [Peptoniphilus lacrimalis 315-B]
gi|281296761|gb|EFA89264.1| ribonuclease H [Peptoniphilus lacrimalis 315-B]
Length = 197
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 13/142 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKE----TTNNRMELMAAIKALTA 62
E AY DG+ + +GV + + + S + N E+ A+KA+
Sbjct: 64 DEFIAYVDGSYRNSDKSFSYGVYIFNERESYSFSKRFHDEDSTMRNVCGEIKGAMKAMEV 123
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +LY Y I F + KV
Sbjct: 124 SLEKNKKVLYLHYDYEGIRAWPQGNW---------KTNKEGTISYKKYFDSIKDRLKVIF 174
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+K H+G + NE VD++A+ A
Sbjct: 175 IKVKAHSGVEFNELVDKLAKEA 196
>gi|82050812|sp|Q5UPY1|RNH_MIMIV RecName: Full=Probable ribonuclease H; Short=RNase H
gi|55416921|gb|AAV50571.1| ribonuclease HI [Acanthamoeba polyphaga mimivirus]
Length = 229
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 19 GNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK------YPCKV 69
GN G G G+ + I +K N+ + AI CKV
Sbjct: 23 GNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAIQYIDDNFDLNKCKV 82
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ TDS+Y ++W + +N W + + N + + E +D W++ H
Sbjct: 83 MIKTDSTYSVNSITKWAEGHSRNDWCKRTGEPIANREFIQEIYEYYQNFNIDFEWVEAHT 142
Query: 130 GNQE-----NEKVDRIARNAAV-SFKNK 151
G + N + D +A +AA + ++K
Sbjct: 143 GQTDSESIANAQADFLANSAAKRAARDK 170
>gi|308480565|ref|XP_003102489.1| hypothetical protein CRE_04047 [Caenorhabditis remanei]
gi|308261221|gb|EFP05174.1| hypothetical protein CRE_04047 [Caenorhabditis remanei]
Length = 182
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKY 65
YTDGA N GGW V+ G+ + TNN EL A +A+ +
Sbjct: 13 LYTDGAALRNGQNDAKGGWAVVYERNGQIFVSKHYFSWGRQTNNLYELTAIFEAIRIARR 72
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---- 119
+ + TDS Y ++W W++NGW T +K+VKN ++ + ++ + +
Sbjct: 73 IGIRNITIKTDSMYSINAITKWYWNWRKNGWLTRARKSVKNREIIEEIRKSMSDVRYEGG 132
Query: 120 -VDLYWIKGHAGNQENEKVDRIARNAA 145
V + ++K H + N D+ A+ AA
Sbjct: 133 AVKIEYVKAHGQDYLNNLADKNAKLAA 159
>gi|328957373|ref|YP_004374759.1| hypothetical protein CAR_c10500 [Carnobacterium sp. 17-4]
gi|328673697|gb|AEB29743.1| hypothetical protein CAR_c10500 [Carnobacterium sp. 17-4]
Length = 135
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 16/143 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-EKETTNNRMELMAAIKALTALKYPC 67
+ YTD + NPGP G G+++ + + + +S +KE +N+ E A IK
Sbjct: 2 IKIYTDASTKNNPGPSGVGIVVSAENRYEQLSIPLDKEMSNHEAEFEAVIKG-------- 53
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL--YWI 125
+ D + ++ + +++ ++ +H WI
Sbjct: 54 -LDYLIDHQLTDETLMMYMDSKLVASAIKKNYVKKDMFQVYLVLIKEKLRHFPLFFVQWI 112
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
+N+ D++AR A
Sbjct: 113 P----QSQNKGADQLARQALQKL 131
>gi|311068710|ref|YP_003973633.1| hypothetical protein BATR1942_08845 [Bacillus atrophaeus 1942]
gi|310869227|gb|ADP32702.1| hypothetical protein BATR1942_08845 [Bacillus atrophaeus 1942]
Length = 132
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 13/141 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +GNPG G G+ ++Y+G + S TN E +A I+ +
Sbjct: 4 EIYIDGASAGNPGLSGIGIFIKYEGTTESFSIPIGTYTNQEAEFLALIEGMKLCAE---- 59
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S + S +++ + ++ + WI G
Sbjct: 60 --RGYQSVSFRTDSDIVERAADLELVKNKSFQPFVDEIIQLKSAFPLFF---IKWIPG-- 112
Query: 130 GNQENEKVDRIARNAAVSFKN 150
++N+K D +A+ A +
Sbjct: 113 --RQNQKADHLAKEAIRLNQK 131
>gi|52080709|ref|YP_079500.1| putative ribonuclease H [Bacillus licheniformis ATCC 14580]
gi|319645332|ref|ZP_07999565.1| YpdQ protein [Bacillus sp. BT1B_CT2]
gi|52003920|gb|AAU23862.1| putative ribonuclease H [Bacillus licheniformis ATCC 14580]
gi|317393141|gb|EFV73935.1| YpdQ protein [Bacillus sp. BT1B_CT2]
Length = 132
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL--TALKYP 66
V Y DGA +G+PGP G G+ ++ K + S +N+ E MA I+ + A +
Sbjct: 3 VEVYIDGASAGDPGPSGLGIFIKDGQKTESFSLPAGSLSNHEAEFMALIEGMKLCAERNY 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + K K + + +K + WI
Sbjct: 63 RIVSFRTDSQIVERTADSE-------FVKNQAFKPYLDAIIRLKKDFDLFF----IKWIP 111
Query: 127 GHAGNQENEKVDRIARNAAV 146
+ N+ D++A+ A +
Sbjct: 112 SKS----NQAADKLAKKAIL 127
>gi|295426246|ref|ZP_06818907.1| ribonuclease H1 [Lactobacillus amylolyticus DSM 11664]
gi|295064091|gb|EFG55038.1| ribonuclease H1 [Lactobacillus amylolyticus DSM 11664]
Length = 252
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 51/154 (33%), Gaps = 17/154 (11%)
Query: 10 HAYTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI- 57
YTDG N G W + + +E +GGE TNN+ME I
Sbjct: 98 TIYTDGGTR-NTGVYKGGHVKKTDKAAWAYRIEWGDQEVHGAGGEYGATNNKMEQTGFIN 156
Query: 58 ---KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
K + K+L DS YV ++ K + + N + W +
Sbjct: 157 ALKKLIELGFNDKKLLFVLDSQYVLNAINKGWLKSWKKRGWKKSSGPLANKEEWQEIDRL 216
Query: 115 SAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N NE VD
Sbjct: 217 LTKFPNAKFEWTKGHANNAGNEFVDHFLNKYMDE 250
>gi|258593487|emb|CBE69826.1| RNase H [NC10 bacterium 'Dutch sediment']
Length = 160
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ + DGA GNPGP G GV+L + + TNN E A + +L +
Sbjct: 17 HLVIHIDGAARGNPGPAGIGVMLEAEDGLLRRTFYQYIGKATNNVAEYKALLLSLREAEK 76
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKW--QQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P V + +DS + + + + T + + +
Sbjct: 77 LQPAVVKIRSDSELLVRQVQGRYRVKSPRLAELYTQALNLMHQLSTASCRLSVE------ 130
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
H G + N + D +A A
Sbjct: 131 ------HIGRELNRQADALANRAINEA 151
>gi|227529089|ref|ZP_03959138.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
gi|227350933|gb|EEJ41224.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
Length = 226
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 9 VHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG + W +L+ G++ +GGE TNNRMELMA
Sbjct: 68 IYLYTDGGSRNHGNKPGQHVKQTDKAAWALLISKGGQQFTKTGGEFGATNNRMELMALRN 127
Query: 59 ALT----ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVE 113
AL K ++ DS YV + W + GW+TS V N +LW + ++
Sbjct: 128 ALQILVKNRKQEDPIIAVLDSHYVLDPIMKGWLNGWARRGWQTSSGSPVANQELWQEVIQ 187
Query: 114 A-SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 188 LLPQFKQLHFQWTKGHANNQGNVIVDHLLNQTMDQM 223
>gi|60102699|gb|AAX14028.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 62.6 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 843 ISVYSDGSHTGQG--AGYGYAIYYSSILVTQGQGPAGPRTEVYDAEIVGAVEGLRAAVGL 900
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 901 PCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVR 960
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 961 VSWVPGHTGIAGNELADRLAKQGA 984
>gi|206603679|gb|EDZ40159.1| Putative ribonuclease H [Leptospirillum sp. Group II '5-way CG']
Length = 134
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTALKYPC 67
Y DGA GNPGP G LL+ + I S TNN+ E A I L A +
Sbjct: 2 ILYCDGASRGNPGPSSIGYLLQDEEGRVIFSEGRVLPPGTNNQAEYQALIAGLQAARDRG 61
Query: 68 --KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+L+ DS + + + + ++ T + E
Sbjct: 62 VRNLLVRADSELMIRQMTGKYRVRHPGLLACYEQATNLSRSFDTIQFE------------ 109
Query: 126 KGHAGNQENEKVDRIARNA 144
H ++N + DR+A A
Sbjct: 110 --HIPREQNAQADRLANEA 126
>gi|60102723|gb|AAX14029.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+G + Y G +
Sbjct: 843 ISVYSDGSHTGQG--AGYGYAIYYGSILVTQGQGPAGPQTEVYDAEIMGAVEGLRAAVGL 900
Query: 69 VLLYTDSSYVHKGFSQWIKKWQ-------QNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + T + L + ++ AS + V
Sbjct: 901 PCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVR 960
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GH G NE DR+A+ A
Sbjct: 961 VSWVPGHTGIAGNELADRLAKQGA 984
>gi|304386369|ref|ZP_07368702.1| ribonuclease H [Pediococcus acidilactici DSM 20284]
gi|304327726|gb|EFL94953.1| ribonuclease H [Pediococcus acidilactici DSM 20284]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 7 REVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
+ YTDG W LL+ +E SGGE TNNRMEL A
Sbjct: 81 DRILLYTDGGSRNTGTVKGGHVRQADLAAWAYLLKKDDQEYSQSGGEFGATNNRMELTAL 140
Query: 57 IKALT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ L + + + +DS Y+ ++ Q + +
Sbjct: 141 WRGLETALAKVGKDAPITVISDSKYILNAITKKWLAGWQRRGWKKSTGDPVANQELWQQI 200
Query: 113 EA--SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W KGHA NQ N VD + K
Sbjct: 201 AKLLPQFTDLQFLWTKGHATNQGNIFVDHKLNKMMDYMEEK 241
>gi|155122257|gb|ABT14125.1| hypothetical protein MT325_M571R [Paramecium bursaria chlorella
virus MT325]
Length = 164
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 17/141 (12%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
KH +HAYTD + G G G Y +K + + NR EL A +
Sbjct: 13 KHSNAIHAYTDASIR--QGKAGIGF---YSPAKKYAARVNEPRDINRAELGAIFAGIYLT 67
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ +L+++DS + + + + ++ + A V +
Sbjct: 68 EQDLDILIFSDSQNALNSITAY------------KRTKYDKLAKFVFELAAERSGNVFVA 115
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+K H+G NE DR+A
Sbjct: 116 KVKAHSGVPGNEAADRLAAAG 136
>gi|270290842|ref|ZP_06197066.1| RNase HI [Pediococcus acidilactici 7_4]
gi|270280902|gb|EFA26736.1| RNase HI [Pediococcus acidilactici 7_4]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 7 REVHAYTDGACSGNPGP----------GGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
+ YTDG W LL+ +E SGGE TNNRMEL A
Sbjct: 81 DRILLYTDGGSRNTGTVKGGHVRQADLAAWAYLLKKDDQEYSQSGGEFGATNNRMELTAL 140
Query: 57 IKALT----ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ L + + + +DS Y+ ++ Q + +
Sbjct: 141 WRGLETALAKVGKDAPITVISDSKYILNAITKKWLAGWQRRGWKKSTGDPVANQELWQQI 200
Query: 113 EA--SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ W KGHA NQ N VD + K
Sbjct: 201 AKLLPQFTDLQFLWTKGHATNQGNIFVDHKLNKMMDYMEEK 241
>gi|172040977|ref|YP_001800691.1| bifunctional RNase H/acid phosphatase [Corynebacterium urealyticum
DSM 7109]
gi|171852281|emb|CAQ05257.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 435
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 7/144 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+R + DG GNPGP G G ++ + + K TNN E I L
Sbjct: 1 MR-LSVECDGGSRGNPGPAGTGSSVKDAAGAEVGCVWQFIKHATNNVAEYQGLINGLNLA 59
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ S +Q + K +V
Sbjct: 60 VEIAEQQGVKPGSLSVDVRMDSKLVVEQMSGRWKIKHPDMKPLAQEVKRIEGQLAQVSYT 119
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ +N + D +A A
Sbjct: 120 WVP----RAQNARADELANRAMDE 139
>gi|110802358|ref|YP_698755.1| RNAse H family protein [Clostridium perfringens SM101]
gi|110682859|gb|ABG86229.1| putative ribonuclease HI [Clostridium perfringens SM101]
Length = 209
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y DG+ + G +G L+ + G + + A+K
Sbjct: 73 IYIYVDGSFMVSKGNYSYGFLVVKNDEILYEDNGIGYDKEAIALRNVSGEVEGAMK---A 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + + T + + E KV IKGH
Sbjct: 130 IEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIKVRFKKIKGH 189
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN+ N++ D +A+ A S
Sbjct: 190 SGNKFNDRADILAKKALESL 209
>gi|315641640|ref|ZP_07896704.1| ribonuclease [Enterococcus italicus DSM 15952]
gi|315482600|gb|EFU73131.1| ribonuclease [Enterococcus italicus DSM 15952]
Length = 198
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G G G++ +G+ + N A + + LK
Sbjct: 60 LVAYVDGSFNRTLGQYGSGIVFLKEGQVIEKLAIPGKDANYTESFQIAGEVIGCLKAMEW 119
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ +S Q I+ W + W+ + + +F + V +K H
Sbjct: 120 AIAQGESQLTIYYDYQGIQAWAEGDWRANKP---ISKYYAAQFQLLQTKIAVHFKKVKAH 176
Query: 129 AGNQENEKVDRIARNAAVSF 148
G+ NE D++A+ A
Sbjct: 177 TGDTYNELADQLAKQGANQA 196
>gi|154483440|ref|ZP_02025888.1| hypothetical protein EUBVEN_01143 [Eubacterium ventriosum ATCC
27560]
gi|149735692|gb|EDM51578.1| hypothetical protein EUBVEN_01143 [Eubacterium ventriosum ATCC
27560]
Length = 208
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AY DG+ + G+GV++ + G+E +S + + + +
Sbjct: 74 TAYVDGSYNIATKEFGYGVVMFHNGEELHMSKSFSD--AEMASMRNVAGEIFGSMAAMEY 131
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + + + G ++KK + ++ V +KGH+
Sbjct: 132 AVNHGITNLSIYYDYMGISKWCTGEWKANKKGTIAYRDYYNKIKTKV--NVQFEKVKGHS 189
Query: 130 GNQENEKVDRIARNA 144
G++ N+ D +A+ A
Sbjct: 190 GDKYNDMADMLAKKA 204
>gi|197121176|ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|220915876|ref|YP_002491180.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
gi|196171025|gb|ACG71998.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|219953730|gb|ACL64114.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 253
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 14/139 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+TDGA GNPGP G G ++ I ++TNN E M I L K
Sbjct: 125 LFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGI 184
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
S+ + K + D + + +V H
Sbjct: 185 ------KELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVR------H 232
Query: 129 AGNQENEKVDRIARNAAVS 147
+EN D ++ A
Sbjct: 233 VPREENTLADAMSNRAIDE 251
>gi|3033416|gb|AAC80264.1| pol polyprotein [Gibbon ape leukemia virus]
Length = 1127
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 7/144 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ G G + K + + E T+ + + A+ L + +
Sbjct: 600 YTDGSSFIAEGKRKAGAAIVDG-KRTVWASSLPEGTSAQKAELVALTQALRLAEGRNINI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA- 129
YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 659 YTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGHQK 718
Query: 130 -GNQ---ENEKVDRIARNAAVSFK 149
+ N + D A+ AA+S +
Sbjct: 719 GNDPVATGNRRADEAAKQAALSTR 742
>gi|332705263|ref|ZP_08425344.1| riibonuclease HI [Lyngbya majuscula 3L]
gi|332356006|gb|EGJ35465.1| riibonuclease HI [Lyngbya majuscula 3L]
Length = 286
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 43/150 (28%), Gaps = 17/150 (11%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALT 61
K ++ DG GNPG G ++ + + +S TNN E AI L
Sbjct: 11 KKTNSKLTILFDGGSRGNPGIAGAAAIIKQPGAQTISVSKFFPHATNNEAEYNGAILGLE 70
Query: 62 ALKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V+L DS V + +
Sbjct: 71 KALEIGAGQVVLKGDSQLVINQLKGTWRVK----------TPHLRPLWTKAKSLLNQFDS 120
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V L WI +N + D A A K
Sbjct: 121 VKLEWIP----RAQNSEADAAANQAMDQRK 146
>gi|313888779|ref|ZP_07822440.1| ribonuclease HI [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845148|gb|EFR32548.1| ribonuclease HI [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 192
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 12/141 (8%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNR---MELMAAIKALTAL 63
E+ Y DG+ + +GV + +E S + ++ R E+ A++A+
Sbjct: 60 DELVVYVDGSYRNSDKSHSYGVYMFNDEEEYTYSKRFFKDSDMRNVSGEIKGAMRAMEEA 119
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K +Y Y I + + +V
Sbjct: 120 AKLGKKKIYLHYDYEGIRSWALAFW---------KTNKEGTIYYKNFYDSIKDKLEVKFI 170
Query: 124 WIKGHAGNQENEKVDRIARNA 144
++ H G + NE VD++A+ A
Sbjct: 171 KVEAHTGVKYNELVDKLAKEA 191
>gi|124515191|gb|EAY56702.1| putative ribonuclease H [Leptospirillum rubarum]
Length = 134
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTALKYPC 67
Y DGA GNPGP G LL+ + I S TNN+ E A I L A +
Sbjct: 2 ILYCDGASRGNPGPSSIGYLLKDEDGRVIFSEGRILPPGTNNQAEYQALIAGLQAARDRG 61
Query: 68 --KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+L+ DS + + + + ++ T + E
Sbjct: 62 VRNLLVRADSELMIRQMTGKYRVRNPGLLACYEQATNLSRSFDTIQFE------------ 109
Query: 126 KGHAGNQENEKVDRIARNA 144
H ++N + DR+A A
Sbjct: 110 --HIPREQNAQADRLANEA 126
>gi|189212637|gb|ACD84911.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHTTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 TIQHEKGHQPTNTSVHTEGNALADKLATQG 175
>gi|14140290|gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa Japonica Group]
Length = 289
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPCK 68
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 151 LHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGF 210
Query: 69 --VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+++Y DS V + W+T ++ ++ K E +++
Sbjct: 211 KKIIVYGDSQLVCYQV--------KGTWQTKNQNMMELCKEVRKLKENFVSFEIN----- 257
Query: 127 GHAGNQENEKVDRIARNAAV 146
H + N + DR A A
Sbjct: 258 -HIRREWNAEADRQANIAIT 276
>gi|260102138|ref|ZP_05752375.1| ribonuclease H1 [Lactobacillus helveticus DSM 20075]
gi|260084028|gb|EEW68148.1| ribonuclease H1 [Lactobacillus helveticus DSM 20075]
gi|328464927|gb|EGF36215.1| putative ribonuclease [Lactobacillus helveticus MTCC 5463]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + +E SGGE TNN+ME A I
Sbjct: 100 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQEVHGSGGEYGATNNKMEQTALINAL 158
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + +KN+ W +
Sbjct: 159 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLAGWKKRGWKRSGGPLKNVAEWQELDRLLK 218
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
W KGHA N+ NE VD +
Sbjct: 219 HFPDSTFEWTKGHANNRGNEFVDHELNRYMDN 250
>gi|227894260|ref|ZP_04012065.1| ribonuclease [Lactobacillus ultunensis DSM 16047]
gi|227863903|gb|EEJ71324.1| ribonuclease [Lactobacillus ultunensis DSM 16047]
Length = 250
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + + SGGE TNN+ME A I
Sbjct: 98 YTDGGSR-NTGVHSGGHVKKTDKAAWAYLIEWDDQSVHGSGGEYGATNNKMEQTALINAL 156
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + + +KN+ W +
Sbjct: 157 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLQGWKKRGWKRSGGPLKNVPEWKELDHLLQ 216
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W KGHA N+ NE VD +
Sbjct: 217 KFPDTTFEWTKGHANNRGNEFVDHELNRYMDNH 249
>gi|189212633|gb|ACD84909.1| reverse transcriptase [Simian foamy virus]
Length = 238
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 25 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 84
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 85 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 144
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 145 IIQHEKGHQPVNTSIHTEGNALADKLATQG 174
>gi|222100146|ref|YP_002534714.1| Ribonuclease H [Thermotoga neapolitana DSM 4359]
gi|221572536|gb|ACM23348.1| Ribonuclease H [Thermotoga neapolitana DSM 4359]
Length = 530
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D + + AY DG+ G GV+L Y K +E E ++R +
Sbjct: 100 LDKETM---IAYVDGSYDV---VCGSGVVLCYRGKKEEYYFWTDIDEFKDSRNIAGEIMA 153
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ K + + K+ V + ++ +
Sbjct: 154 ALFAMDCALKKGAKR-----LILRHDLEGLEKWATEEYRTKEPVTRVYKYLYEQFCRSGL 208
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V +K H+G+ N++ DR+A+ AA
Sbjct: 209 EVVFEKVKSHSGDFCNDEADRLAKKAAK 236
>gi|189212641|gb|ACD84913.1| reverse transcriptase [Simian foamy virus]
gi|189212647|gb|ACD84916.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAAYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|189212623|gb|ACD84904.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV K ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAKSANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|323465683|gb|ADX69370.1| Ribonuclease H1 [Lactobacillus helveticus H10]
Length = 252
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + +E SGGE TNN+ME A I
Sbjct: 100 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQEVHGSGGEYGATNNKMEQTALINAL 158
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + +KN+ W +
Sbjct: 159 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLAGWKKRGWKRSGGPLKNVAEWQELDRLLK 218
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
W KGHA N+ NE VD +
Sbjct: 219 HFPDSTFEWTKGHANNRGNEFVDHELNRYMDN 250
>gi|288573975|ref|ZP_06392332.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569716|gb|EFC91273.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 195
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 19/143 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYP- 66
A+ DG GNPG G G L + G E E TNN E MAAI L +
Sbjct: 4 KAHFDGGSRGNPGIAGAGAALYDDENRLVWRGAEPLGERTNNEAEYMAAILVLKEVLRRG 63
Query: 67 -CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ L DS V S K + L +F + V W+
Sbjct: 64 LSEIELCGDSKLVINQLSGAW-----------KIKEPRLGVLAEEFKALAKGLSVRFRWV 112
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
++N + DR+A A
Sbjct: 113 P----RKDNSEADRMANLAMDGL 131
>gi|161506733|ref|YP_001576683.1| putative ribonuclease [Lactobacillus helveticus DPC 4571]
gi|160347722|gb|ABX26396.1| putative ribonuclease [Lactobacillus helveticus DPC 4571]
Length = 252
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + +E SGGE TNN+ME A I
Sbjct: 100 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQEVHGSGGEYGATNNKMEQTALINAL 158
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + +KN+ W +
Sbjct: 159 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLAGWKKRGWKRSGGPLKNVAEWQELDRLLK 218
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
W KGHA N+ NE VD +
Sbjct: 219 HFPDSTFEWTKGHANNRGNEFVDHELNRYMDN 250
>gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
Length = 1189
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS---GGEKETTNNRMELMAAI 57
++ + YTDG+ G G GV R + S +
Sbjct: 905 LERSISNNIVCYTDGSLLE--GRAGAGVYSRELRLNQFYSLGRNCTVFQAEIFALMCGVQ 962
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL + +DS K + + + I + E ++
Sbjct: 963 SALQQRVMGKVIYFCSDSQAAIKALASANSRSKL------------VIACRTQIEELNSV 1010
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ V+L W+ GH+ NE D +AR+ A
Sbjct: 1011 NSVNLVWVPGHSSIAGNELADELARDGA 1038
>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
Length = 2000
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 20/148 (13%)
Query: 8 EVHAYTDGACSGN-----------PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
+ YTDG+ N GG+ +Y G + E + L
Sbjct: 1575 TICIYTDGSGINNHVGAAAVAPSLQANGGYTKRTQYMGPSSTSTVYAAELRGLVLALEII 1634
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ P K ++TD+ K S + + + + +
Sbjct: 1635 LDLHATGATPRKCAIFTDNQ---------AAIQAIRNPKHSSGQYILLEAIQALDMLRNF 1685
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V WI H G NE+ DR+A+ A
Sbjct: 1686 GWEVQFRWIPAHVGVPGNEEADRMAKEA 1713
>gi|327440667|dbj|BAK17032.1| ribonuclease HI [Solibacillus silvestris StLB046]
Length = 129
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y DGA +GNPGP G G+ ++ +G+ IS T N++ E A ++ L
Sbjct: 2 LEVYIDGASAGNPGPSGIGIFIKGEGQHVKISEPIGNTNNHQAEFTALLRGLEE------ 55
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L SS+V I + ++ ++ + +E +
Sbjct: 56 -ALKIGSSFVSVRSDSKIVVSSIDKAYVKNEDFKPYLEQALSLIEQFDLFFIKW------ 108
Query: 129 AGNQENEKVDRIARNAAVS 147
+EN+ D +AR A +
Sbjct: 109 IPEKENKAADVLAREAILK 127
>gi|326480360|gb|EGE04370.1| hypothetical protein TEQG_08665 [Trichophyton equinum CBS 127.97]
Length = 243
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTA 62
+ DGACS N P G G+ + I + E TN + ELMAAI AL
Sbjct: 88 DSIVIAVDGACSNNGTPYAQAGLGIYFGSRSSFNISLALDIDEPTNQKAELMAAIGALQM 147
Query: 63 LKYPC----------KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ C V + +DS Y+ + ++WI KW+ NG+ + K V N +L+
Sbjct: 148 ARDICVNGSYGKPIVNVTIKSDSEYLVRAATEWIPKWETNGYTNARGKPVVNGELFKWLD 207
Query: 113 EASAQHKVDLYWI-KGHAGNQENEKVDRIARNA 144
+ + H N DR+A+ A
Sbjct: 208 ACIFDLNAEGVAVHFWHVERAYNCHADRLAKQA 240
>gi|71998627|ref|NP_001022508.1| RNase H family member (rnh-1.1) [Caenorhabditis elegans]
gi|38176087|gb|AAB93313.3| Rnase h protein 1.1, partially confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 507
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 6/143 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTDG+ P G G+ + + +N A++
Sbjct: 326 TLVMYTDGSYLKRPPTSGIGIFVGPGHELNRSQRIRGPIQDNNYAEFIAVRTALQNALKN 385
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ Y D V + + + Q T+ ++ ++F+ V +
Sbjct: 386 E--NYRDQKVVIRTDCLNVIEALQGTRPTA----FVDVKSQVEFLSKQFPKGVHFQHVYA 439
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
HAG+ NE D A A+ +N
Sbjct: 440 HAGDPGNEMADLFAGQASSKSQN 462
>gi|254822754|ref|ZP_05227755.1| bifunctional RNase H/acid phosphatase [Mycobacterium intracellulare
ATCC 13950]
Length = 159
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 20/146 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + + TNN E I L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 --LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ +Y DS + + S K A+ ++
Sbjct: 60 ALKLGASEAAVYLDSKLLVEQMSGRW----------KVKHPDLIELHAQARALAARFDRI 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
WI + N DR+A A
Sbjct: 110 SYSWIP----RERNSHADRLANEAMD 131
>gi|134081206|emb|CAK41715.1| unnamed protein product [Aspergillus niger]
Length = 278
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 16/153 (10%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+HL + DGAC N G Y G + ++G N + A A
Sbjct: 126 RHLGCIVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACER 185
Query: 64 -------KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE--- 113
+ V++ +DS YV +G ++WI KW+ N W T+ V N + + K
Sbjct: 186 ALLGDGEERLHTVVIKSDSEYVVRGMTEWIFKWKANDWTTAKGLPVANQEHFKKIDSLVE 245
Query: 114 --ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ Q V + + + N++ DR+A +A
Sbjct: 246 SLENEQVPVQFWQVP----REFNQEADRLAASA 274
>gi|224541682|ref|ZP_03682221.1| hypothetical protein CATMIT_00854 [Catenibacterium mitsuokai DSM
15897]
gi|224525399|gb|EEF94504.1| hypothetical protein CATMIT_00854 [Catenibacterium mitsuokai DSM
15897]
Length = 496
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
EV A+ DG+ + G+G ++ KG EK S N +
Sbjct: 81 DEVVAFVDGSYNAEKEKAGFGTIIISKGGEKYTSYKSFGKQFNENLIALRNVFAELEGVK 140
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
VL+ +S + K K + +++ +
Sbjct: 141 EAVLVAVNSKKTKITIYYDYTGIEMWATKKWKAKNKLTQAYTEFIQKKMKYIEIEFIKVP 200
Query: 127 GHAGNQENEKVDRIARN 143
H+G NE+ D +A+
Sbjct: 201 AHSGIIYNEEADALAKK 217
>gi|169605125|ref|XP_001795983.1| hypothetical protein SNOG_05579 [Phaeosphaeria nodorum SN15]
gi|160706712|gb|EAT86643.2| hypothetical protein SNOG_05579 [Phaeosphaeria nodorum SN15]
Length = 613
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALTALK 64
++ YTDG+ GN G G + Y G + E TN R EL A +AL +
Sbjct: 231 INVYTDGSALGNGKVGAVGGVGVYFGPNDSRNISEPLRGSRQTNQRAELTAVARALDHIP 290
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD--- 121
L++TDS+Y K ++W +KW++N WK+S K V+N DL + + +
Sbjct: 291 IDRSALIHTDSNYSIKCLTEWFQKWEKNNWKSSSGKDVENKDLVEPIIARIRERDMCRAK 350
Query: 122 --LYWIKGHAGNQENEKVDRIARNA 144
WIKGHA + N D +A
Sbjct: 351 TDFKWIKGHANDPGNVAADLLAVQG 375
>gi|189212643|gb|ACD84914.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKNNNAGMGIVHAAYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|156043751|ref|XP_001588432.1| hypothetical protein SS1G_10879 [Sclerotinia sclerotiorum 1980]
gi|154695266|gb|EDN95004.1| hypothetical protein SS1G_10879 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1486
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLL-RYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
++ ++DG+ G G G ++ ++ + S E MAA+
Sbjct: 1236 DIQIFSDGSKSESKDGATGGGFVITQFDIQVAHYSFSLGTNAEVFDAEAMAAVTRAAKAL 1295
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
+ L TD + ++ + H K+
Sbjct: 1296 AFPSIKLATDLWIFLDNYEVALRLGSHFNGLSQAVFEDFLKLTQAWAARPRLPHIPPGKI 1355
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++W+ GH NE D+ A+ A
Sbjct: 1356 CIHWVPGHLNIPGNEMADKAAKEGAK 1381
>gi|187969392|gb|ACD44839.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAAYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|189212631|gb|ACD84908.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKNNNAGMGIVHATYNPEYKILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 TIQHEKGHQPMNTSIHTEGNALADKLATQG 175
>gi|86157150|ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773661|gb|ABC80498.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
Length = 168
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 14/139 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+TDGA GNPGP G G ++ I ++TNN E M I L K
Sbjct: 40 LFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGI 99
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
S+ + K + D + + +V H
Sbjct: 100 ------KELEVLSDSELMVKQLAGDYAVKADHLRPLHDEAQALIAGFDRIQVR------H 147
Query: 129 AGNQENEKVDRIARNAAVS 147
+EN D ++ A
Sbjct: 148 VPREENALADAMSNRAIDE 166
>gi|126333420|ref|XP_001377846.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 1155
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 10/144 (6%)
Query: 12 YTDGACSGNPGPGGW--GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C N G E I +G + + + A+ L +V
Sbjct: 599 YTDGSCLRN--ESGILVARYAITTTAEVIEAGHLPSAFSAQQAELEAVTRACELAKGKRV 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKGH 128
+YTDS Y + WQ G+ TS +KN + +EA K + + I GH
Sbjct: 657 NIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEALLLPKAIAIIKIPGH 716
Query: 129 ----AGN-QENEKVDRIARNAAVS 147
+ + + N D+ A+ AA
Sbjct: 717 SRENSPHAKGNALADQYAKEAARQ 740
>gi|210620853|ref|ZP_03292270.1| hypothetical protein CLOHIR_00213 [Clostridium hiranonis DSM 13275]
gi|210155065|gb|EEA86071.1| hypothetical protein CLOHIR_00213 [Clostridium hiranonis DSM 13275]
Length = 198
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 3/138 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ AY DG+ + G GV++ K +E I + + + + A +Y
Sbjct: 61 NTIEAYVDGSYEHSIKKYGSGVVVL-KNREVIHTESFGGNDEEYLSMRNVAGEIKASEYA 119
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + F + G ++KK + ++ + V +
Sbjct: 120 MNYCIENNIPKLVIYFDYQGIEKWCTGEWKANKKGTIEYRDYYNSIK--DRLDVSFVKVA 177
Query: 127 GHAGNQENEKVDRIARNA 144
H G++ NE D++A++
Sbjct: 178 AHTGDKYNEMADQLAKDG 195
>gi|242805992|ref|XP_002484649.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715274|gb|EED14696.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 435
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 19/159 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGG------------WGVLLRYKGKEKIISGGEKETTN 48
+ S ++ Y+DG+ N GG G + KE + E
Sbjct: 129 LQSIPNNDIIIYSDGSKLENGQTGGGYVGFQAGSQFLRGSIPLGHNKEVFDAEAEAALAG 188
Query: 49 NRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
+ + + + + C L + ++ +
Sbjct: 189 LKAAMTHSTAQCSPNLWICLDNLEVTIQLLSSSIGSSQAVFKSFNTLAAT-------WPS 241
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + V + W+ GHA NE D A+ A
Sbjct: 242 RRRLLQIESGAVRIRWVPGHANIPGNEAADCAAKEGAGK 280
>gi|187969388|gb|ACD44837.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAAYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|17537999|ref|NP_496121.1| RNase H family member (rnh-1.2) [Caenorhabditis elegans]
gi|3881909|emb|CAA90146.1| C. elegans protein ZK938.7, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 404
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 48/166 (28%), Gaps = 24/166 (14%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTALKY 65
YTDG+ N GGW ++ + + TNN EL A +A ++
Sbjct: 7 EVYTDGSTVNNGKRGARGGWAIVFPFDRSLDEYDFMKVGKQTNNVYELTAIYEATEVVRC 66
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-------------- 111
+V + T +
Sbjct: 67 WDSFKCNQKLEFVRLKNTITPTTSSILIPCTRRTVSPNGSTDGTNMGGLRITPGILSKIS 126
Query: 112 ------VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
S V + ++KGH N N + DR+A+ A S N+
Sbjct: 127 RSFVPSTAISESLDVKIEYVKGHHTNFFNCEADRLAKKACRSNINQ 172
>gi|323838|gb|AAB59862.1| pol polyprotein [Equine infectious anemia virus]
Length = 1138
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 613 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 666
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 667 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 714
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 715 KGICGNQLADEAAK 728
>gi|227877859|ref|ZP_03995876.1| ribonuclease [Lactobacillus crispatus JV-V01]
gi|227862545|gb|EEJ70047.1| ribonuclease [Lactobacillus crispatus JV-V01]
Length = 267
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 115 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 173
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV ++ + + + N+ W +
Sbjct: 174 KKLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLK 233
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N+ NE VD
Sbjct: 234 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQ 265
>gi|68535744|ref|YP_250449.1| bifunctional RNase H/acid phosphatase [Corynebacterium jeikeium
K411]
gi|68263343|emb|CAI36831.1| rnhA [Corynebacterium jeikeium K411]
Length = 431
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 10/144 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + DG GNPG G G +L + + TNN E I AL
Sbjct: 1 MR-LDVECDGGSRGNPGIAGCGSSVLEGDQEVAARWEFIAKATNNVAEYQGLINALELAI 59
Query: 65 YPCKVL--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K+ D + S+ + + WK + V
Sbjct: 60 EVAKIRGVAAGDLEIQVRMDSKLVVEQMSGRWKIK--HPDMKPLAARVKELEATLAAVTY 117
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
W+ +N++ D +A A
Sbjct: 118 NWVP----RAQNKRADELANRAMD 137
>gi|256750823|ref|ZP_05491708.1| ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
gi|256750406|gb|EEU63425.1| ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
Length = 106
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWM 109
MEL A I+ L ALK PCKV LY+DSSYV F + +KWQ+N W SDK V+N DLW
Sbjct: 1 MELKAVIEGLKALKRPCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQDLWK 60
Query: 110 KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ +E S H+V+ +KGHA N+ N DR+A
Sbjct: 61 ELLEISKNHQVNWIKVKGHADNEYNNLCDRLATE 94
>gi|130595|sp|P11204|POL_EIAV9 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 621 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 674
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 675 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 722
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 723 KGICGNQLADEAAK 736
>gi|146421524|ref|XP_001486707.1| hypothetical protein PGUG_00084 [Meyerozyma guilliermondii ATCC
6260]
Length = 264
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIKALTALK 64
+ DGA G+ G+GV + E N R EL A I ++
Sbjct: 60 KIFIDGAFQGDQC--GYGVWYGDDDPRNAAVPLFQAKEELPLNNQRAELRAMIHVFRNIQ 117
Query: 65 YPCKVL---------LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK----- 110
++ + TDS K + W KW++NGWKT+ + + N DL +
Sbjct: 118 QEIELNNGIPLKEYVILTDSQATIKALTIWSVKWKKNGWKTTKGEIIANKDLISEAVELL 177
Query: 111 ----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
++ ++ + + GHAG NE+ D++A AA
Sbjct: 178 ESLEQYYRTSDLRLAIEHVYGHAGVHGNEEADKLATFAA 216
>gi|9944518|gb|AAG02702.1|AF247394_2 pol protein [Equine infectious anemia virus]
Length = 1146
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 621 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 674
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 675 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 722
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 723 KGICGNQLADEAAK 736
>gi|417517|sp|P32542|POL_EIAVC RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 621 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 674
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 675 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 722
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 723 KGICGNQLADEAAK 736
>gi|326803609|ref|YP_004321427.1| ribonuclease HI [Aerococcus urinae ACS-120-V-Col10a]
gi|326651416|gb|AEA01599.1| ribonuclease HI [Aerococcus urinae ACS-120-V-Col10a]
Length = 196
Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 4/141 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+V AY DG+ G+G +L Y+GKE G +++ + A
Sbjct: 60 DQVLAYVDGSFMTANNRYGFGGILIYRGKEYTFYG--GGDDPELVKMRNVAGEMMASMRA 117
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K + ++ V F + NG + + ++ + ++ +K
Sbjct: 118 VKAAIKLEAKEVLIHFDYQGIEKWVNGDWQAKNE--FTQSYRQFMLDKEKEIRIHFVKVK 175
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H+ + N+ D++A+ A++
Sbjct: 176 AHSNDHYNDIADQLAKKGALN 196
>gi|187969394|gb|ACD44840.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKEKI----ISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHASYKPEYQILDQWSIPLGNHTAQMAEITAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|260655683|ref|ZP_05861156.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
gi|260629600|gb|EEX47794.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
Length = 196
Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 18/139 (12%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL- 70
+ DGA GNPG GG G +L G+ + E N A+ L +
Sbjct: 6 FFDGASRGNPGTGGAGAVLLCGGRPVWQAALPIELCTNNEAEYTALGLLLREIEQRGLRG 65
Query: 71 --LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
++ DS V + + K + L +E + V W+
Sbjct: 66 ASVFGDSQLVIRQVTGAW-----------KIKEPRLAALAAPLIELAKTLGVSFRWVP-- 112
Query: 129 AGNQENEKVDRIARNAAVS 147
++N DR++ A
Sbjct: 113 --REQNALADRLSNRAIDE 129
>gi|189212617|gb|ACD84901.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W + + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAQCLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPXNTSIHTEGNALADKLATQG 175
>gi|295691969|ref|YP_003600579.1| ribonuclease h [Lactobacillus crispatus ST1]
gi|295030075|emb|CBL49554.1| Ribonuclease H [Lactobacillus crispatus ST1]
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 104 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 162
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV ++ + + + N+ W +
Sbjct: 163 KKLLELGFNDKHLLFVLDSQYVLNAINKHWLQSWKKRGWRRSSGPLANVAEWQELDRLLK 222
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N+ NE VD
Sbjct: 223 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQ 254
>gi|291522516|emb|CBK80809.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Coprococcus catus GD/7]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 8/139 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKYPCK 68
AY DG+ + G G+G L G++ I +G E E + A+ +
Sbjct: 77 AYVDGSYNVETGVYGYGGFLCIGGQKIILQGNGNEPEMATMHNVAGEVLGCKIAVYEARR 136
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + Y + + V +A + +K H
Sbjct: 137 RGVKSLTIYYDYLGIEKWATGEWERN------KVGTKYYHEIMKDAMKHMTIVFKKVKAH 190
Query: 129 AGNQENEKVDRIARNAAVS 147
G NE+ D++A+ A +S
Sbjct: 191 TGIDGNEEADKLAKQAVLS 209
>gi|313233471|emb|CBY09643.1| unnamed protein product [Oikopleura dioica]
Length = 169
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 12 YTDGACSGNPGPG----GWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALTALKY 65
YTDG+C GN G G GV Y+ + TN EL AA+ A+ +
Sbjct: 28 YTDGSCKGNHQRGIRFSGSGVHFGYRKEIIRPCHTYNPRVSTNQHAELKAALLAIRHAEK 87
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++ + TDS ++ ++ + V+
Sbjct: 88 YNLDRLQIRTDSQFLIDMIPHRSYGGNMVS---------HLAEIVDEISYLMNYVDVEFV 138
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ H N++ D +A+ AA + +
Sbjct: 139 HVPAHRNENGNDRADYLAKRAADIHRER 166
>gi|189212627|gb|ACD84906.1| reverse transcriptase [Simian foamy virus]
Length = 238
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ + S T E+ A
Sbjct: 25 YTDGSAIKSPDPTKSNNAGMGIVHATYKPKYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 84
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV K ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 85 ALKLPGPVLVITDSFYVAKSANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 144
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 145 TIQHEKGHQPINTSIHTEGNALADKLATQG 174
>gi|260587772|ref|ZP_05853685.1| putative ribonuclease H1 [Blautia hansenii DSM 20583]
gi|331083775|ref|ZP_08332884.1| hypothetical protein HMPREF0992_01808 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542037|gb|EEX22606.1| putative ribonuclease H1 [Blautia hansenii DSM 20583]
gi|330403200|gb|EGG82760.1| hypothetical protein HMPREF0992_01808 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 199
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------ELMAAIKALTA 62
AY DG+ +G +L Y+ + +S T + M E A
Sbjct: 66 IAYVDGSFDAAQKAYSYGCILLYQEQRTELSKAFYNTEDVSMRNVAGELEGAMAAMEYCE 125
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K+ LY D + + K+ + + F + +V
Sbjct: 126 KNHISKLHLYYDYQGIESWATGEWKRNKPGTIRYKA------------FFDTLQNVQVIF 173
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+ +KGH+G + NE VDR+A+ A
Sbjct: 174 HKVKGHSGVELNEAVDRLAKAA 195
>gi|302754814|ref|XP_002960831.1| hypothetical protein SELMODRAFT_402223 [Selaginella moellendorffii]
gi|300171770|gb|EFJ38370.1| hypothetical protein SELMODRAFT_402223 [Selaginella moellendorffii]
Length = 486
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLL-----------RYKGKEKIISGGEKETTNNRMELMAAI 57
+ A+TDG+ GG+GV + R S E L +
Sbjct: 8 LQAFTDGSFKR-GVFGGYGVFIPRVSMRLACGRRANDNLHTSSTITFELLGLMRALEICL 66
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ V +YTDS +++ G NI + ++ ++
Sbjct: 67 EMEWHWGLWEPVFVYTDSYDSLMLLEMYVQDPIALGRH-----PNANIIQTIVWLAGTSF 121
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAA 145
V +KGH N+ D +A+ A
Sbjct: 122 VPVHFCKVKGHYDIAGNQVADELAKIGA 149
>gi|262047638|ref|ZP_06020592.1| RNase HI [Lactobacillus crispatus MV-3A-US]
gi|260572038|gb|EEX28604.1| RNase HI [Lactobacillus crispatus MV-3A-US]
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 104 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 162
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV ++ + + + N+ W +
Sbjct: 163 KKLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLK 222
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N+ NE VD
Sbjct: 223 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQ 254
>gi|256844260|ref|ZP_05549746.1| RNase HI [Lactobacillus crispatus 125-2-CHN]
gi|256613338|gb|EEU18541.1| RNase HI [Lactobacillus crispatus 125-2-CHN]
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 104 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 162
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV ++ + + + N+ W +
Sbjct: 163 KKLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLK 222
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N+ NE VD
Sbjct: 223 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQ 254
>gi|294791626|ref|ZP_06756774.1| putative ribonuclease H1 [Veillonella sp. 6_1_27]
gi|294456856|gb|EFG25218.1| putative ribonuclease H1 [Veillonella sp. 6_1_27]
Length = 241
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 14/141 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTALK 64
AY DG+ + G G ++ GK K S N EL+AA+ +
Sbjct: 108 VAYIDGSYNKETNTVGAGGVIFLNGKRKTFSFPSTDERYTSFWNVAGELLAAMHVMKYAV 167
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
Y+ + + N + + +V +
Sbjct: 168 DNGISECSLYYDYMGIEMWATKRWKRNNELTK---------EYSAFYDSIKNHVRVYFHK 218
Query: 125 IKGHAGNQENEKVDRIARNAA 145
+ H G+ NE D +A+ A
Sbjct: 219 VAAHTGDTYNEMADALAKQGA 239
>gi|256849340|ref|ZP_05554773.1| ribonuclease [Lactobacillus crispatus MV-1A-US]
gi|312976983|ref|ZP_07788732.1| ribonuclease H1 [Lactobacillus crispatus CTV-05]
gi|256714116|gb|EEU29104.1| ribonuclease [Lactobacillus crispatus MV-1A-US]
gi|310896311|gb|EFQ45376.1| ribonuclease H1 [Lactobacillus crispatus CTV-05]
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 104 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 162
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV ++ + + + N+ W +
Sbjct: 163 KKLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLK 222
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W KGHA N+ NE VD
Sbjct: 223 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQ 254
>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
Length = 809
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 17/145 (11%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC--- 67
+TDG+ G G + + E + + + +
Sbjct: 524 IFTDGSKIE--GRVGAALSIWEGTGEIKTKKLKLGSYCTVYQAELLALLKATEEVLSGGA 581
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ D+ + T + KT+ + ++ L+WIK
Sbjct: 582 ATYNIFCDARSTLDVIASGESLHPLAFKITKNLKTITERNQ-----------EIRLFWIK 630
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
H G + NE+ D +A+ AA+S K K
Sbjct: 631 AHIGLEGNERADVLAKEAALSLKCK 655
>gi|189212645|gb|ACD84915.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAAYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ ++KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNNKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|189212609|gb|ACD84897.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W + + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAQCLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPMNTSIHTEGNALADKLATQG 175
>gi|302666602|ref|XP_003024898.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
gi|291188975|gb|EFE44287.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
+LR + DGAC N GV + K + N+ +AA I L
Sbjct: 37 NLRSIIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDPSWATNQKAELAAGIYGL 96
Query: 61 TALKYPCK----------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
A + V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N L+ +
Sbjct: 97 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKE 156
Query: 111 FVEASAQHKVDLYWIK---GHAGNQENEKVDRIARNA 144
+ ++ +K H + N + D++AR+A
Sbjct: 157 L--SWRVRELAESHVKVYFWHVRREHNREADQLARDA 191
>gi|187969398|gb|ACD44842.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHASYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|295396963|ref|ZP_06807085.1| ribonuclease H [Aerococcus viridans ATCC 11563]
gi|294974816|gb|EFG50521.1| ribonuclease H [Aerococcus viridans ATCC 11563]
Length = 220
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 17/154 (11%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-----EKETTNNRMELMAA 56
D+ + Y DG+ G G+G ++ ++ K GG + N E++AA
Sbjct: 76 DADTMS---VYVDGSFDKKSGYFGYGGVVLFQDTIKTYKGGRNTEGLAKMRNVAGEIIAA 132
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ A+ K + Y+ K + + +
Sbjct: 133 MHAVKIAKKSGAKNVVIYHDYMGIAEWALKSWQ---------AKNDYTKEYQDYMQDQAK 183
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ + H GNQ NE D++A++ K+
Sbjct: 184 DLAIGFVKVAAHTGNQYNEDADQLAKDGIRQAKS 217
>gi|290962852|ref|YP_003494034.1| ribonuclease H [Streptomyces scabiei 87.22]
gi|260652378|emb|CBG75511.1| putative ribonuclease H [Streptomyces scabiei 87.22]
Length = 217
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 35 KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94
+ +G TNN EL A + L A + + DS Y K + W+ W++NGW
Sbjct: 9 PSRWEAGPLGRATNNIAELTALERLLAATDPAVPIEIRMDSQYAMKAVTTWLPGWKRNGW 68
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA--GNQENEKVDRIARNAA 145
+T+ K V N +L ++ E VD ++ H G+ N+ DR A AA
Sbjct: 69 RTAAGKPVANRELVVRIDELLTGRTVDFRYVPAHQVDGDPLNDFADRAASQAA 121
>gi|187969396|gb|ACD44841.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHASYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|930259|emb|CAA33367.1| reverse transcriptase (476 AA) [Woolly monkey sarcoma virus]
Length = 477
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G ++ GK + + E T+ + + A+ L +
Sbjct: 212 YTDGSSFIAEGKRRAGAAIV---DGKRTVWASSLPEGTSAQKAELVALTQALRLAEGRDI 268
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 269 NIYTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGH 328
Query: 129 A--GNQ---ENEKVDRIARNAAVSFK 149
+ N + D A+ AA+S +
Sbjct: 329 QKGNDPVATGNRRADEAAKQAALSTR 354
>gi|77245|pir||S04842 pol polyprotein - simian sarcoma-associated virus (fragment)
Length = 476
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G ++ GK + + E T+ + + A+ L +
Sbjct: 212 YTDGSSFIAEGKRRAGAAIV---DGKRTVWASSLPEGTSAQKAELVALTQALRLAEGRDI 268
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 269 NIYTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGH 328
Query: 129 A--GNQ---ENEKVDRIARNAAVSFK 149
+ N + D A+ AA+S +
Sbjct: 329 QKGNDPVATGNRRADEAAKQAALSTR 354
>gi|148270608|ref|YP_001245068.1| ribonuclease H [Thermotoga petrophila RKU-1]
gi|147736152|gb|ABQ47492.1| ribonuclease H [Thermotoga petrophila RKU-1]
Length = 221
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D + + AY DG+ G GV+L Y K +E E ++R +
Sbjct: 61 LDEETM---IAYVDGSYDV---VCGSGVVLCYRGKKEEYYFWTDIDEFKDSRNIAGEIMA 114
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ K + + K+ V + ++ +
Sbjct: 115 ALFAMDCALKKGAKR-----LILRHDLEGLEKWATEEYRTKEPVTRVYKYLYEQFCRSGL 169
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+V +K H+G+ N++ DR+A+ AA N
Sbjct: 170 EVVFEKVKSHSGDFCNDEADRLAKEAAKKRSN 201
>gi|187969382|gb|ACD44834.1| pol protein [Simian foamy virus]
Length = 335
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVVESANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|253681913|ref|ZP_04862710.1| ribonuclease HI [Clostridium botulinum D str. 1873]
gi|253561625|gb|EES91077.1| ribonuclease HI [Clostridium botulinum D str. 1873]
Length = 480
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
AY DG+ +G ++ Y +E + + + I+ C
Sbjct: 71 IAYVDGSYEERKKQYSYGAVIFYNGNEEHFCEKFSDQDMISMRNVAGEIEGAKRAIKFCI 130
Query: 69 VLLYT--DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
D Y ++G +W K I + +A + ++ +K
Sbjct: 131 DNNIKALDIYYDYEGIEKWCNGIW-------KAKKSGTIAYKEYYDKAIDKVSINFIKVK 183
Query: 127 GHAGNQENEKVDRIARNA 144
GH+GN+ N+ D +A++A
Sbjct: 184 GHSGNKYNDLADLLAKSA 201
>gi|290629|gb|AAA43004.1| reverse transcriptase [Equine infectious anemia virus]
Length = 987
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + ++ G RM AI+ +
Sbjct: 462 ITIYTDGGKQN--GEGIAAYVTSNGRTKQKRLGPVTHQVAERM----AIQMALEDTRDKQ 515
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W + V W+ GH
Sbjct: 516 VNIVTDSYYCWKNITEGLGLE------------GPQSPWWPIIQNIREKEIVYFAWVPGH 563
Query: 129 AGNQENEKVDRIAR 142
G N+ D A+
Sbjct: 564 KGICGNQLADEAAK 577
>gi|227501168|ref|ZP_03931217.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
gi|227216662|gb|EEI82066.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
Length = 194
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 17/145 (11%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM------ELMAAIKALT 61
+ AY DG+ + G GV+ K E + ++ +
Sbjct: 59 TIIAYVDGSYNLKEKIYGAGVVYITKDGENELYETYRDDFYKHRNVAGEVKASELAIRRA 118
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ K++++ D + + I EA K+
Sbjct: 119 LGEKREKIVIFHDYQGISSWANDEW-----------KANNELTISYKNFVREARKSLKIS 167
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+KGH+ ++ N+ D++A+ AA+
Sbjct: 168 FVKVKGHSNDKYNDWADKLAKKAAL 192
>gi|189212613|gb|ACD84899.1| reverse transcriptase [Simian foamy virus]
gi|189212621|gb|ACD84903.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|260578172|ref|ZP_05846092.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
gi|258603711|gb|EEW16968.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
Length = 437
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 10/144 (6%)
Query: 6 LREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + DG GNPG G G +L + + TNN E I AL
Sbjct: 1 MR-LDVECDGGSRGNPGIAGCGSSVLEGDQEVAARWEFIAKATNNVAEYQGLINALELAI 59
Query: 65 YPCKVL--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K+ D + S+ + + WK + V
Sbjct: 60 EVAKMRGVAAGDLEIQVRMDSKLVVEQMSGRWKIK--HPDMKPLAARVKELEATLAAVTY 117
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
W+ +N++ D +A A
Sbjct: 118 NWVP----RAQNKRADELANRAMD 137
>gi|239932980|ref|ZP_04689933.1| ribonuclease H [Streptomyces ghanaensis ATCC 14672]
Length = 206
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 35 KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94
+G TNN EL A + L + + + DS Y K + W+ W++NGW
Sbjct: 8 PVHWEAGALGRATNNVAELTALERLLASTDPAVPLEVRMDSQYAMKAVTTWLPGWKRNGW 67
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA--GNQENEKVDRIARNAAVSFKN 150
+T+ K V N +L ++ V+ ++ H G++ N+ DR A AA + +N
Sbjct: 68 RTAAGKPVANQELVVRIDALLQDRSVEFRYVPAHQVDGDRLNDFADRAASQAATTQQN 125
>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
Length = 1162
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V +TDG+ G G L + G+ +I S + +
Sbjct: 885 DVRIFTDGSKIE--GRVG-AALSIWDGEVEIRSLKLALAPYCTVYQAELLALSY------ 935
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQ---NGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++ + + + M A V LYW
Sbjct: 936 ---AVKEAQLRNGSTFGVFSDSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTVALYW 992
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
IK HAG + NE+ D++A+ AA+ K
Sbjct: 993 IKAHAGLEGNERADQLAKEAALLSKK 1018
>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
Length = 804
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 8/141 (5%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ R + YTDG+ N G + +Y G + E+T EL + AL +
Sbjct: 178 RAPRPIALYTDGSGI-NGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVII 236
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + + + + A V
Sbjct: 237 LQRQM-------QHAVIFTDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFR 289
Query: 124 WIKGHAGNQENEKVDRIARNA 144
WI H G + NE+ DR A+ A
Sbjct: 290 WIPAHRGVEGNEQADRRAKEA 310
>gi|258653438|ref|YP_003202594.1| phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
gi|258556663|gb|ACV79605.1| Phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
Length = 370
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 42/150 (28%), Gaps = 18/150 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKAL 60
+ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 4 PQQANHVVVQADGGSRGNPGPAGYGAVVFDDQGAVLAERAASIGRATNNVAEYGGLIAGL 63
Query: 61 TALKYPCKVL--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A V + DS V + S K +
Sbjct: 64 EAALELGAVTVAVQMDSKLVVEQMSGRW----------KVKHPDIKPLASRAAGLVAQFE 113
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+V W+ N DR+A A +
Sbjct: 114 RVTFDWLP----RARNAHADRLANEAMDAA 139
>gi|238019557|ref|ZP_04599983.1| hypothetical protein VEIDISOL_01426 [Veillonella dispar ATCC 17748]
gi|237864256|gb|EEP65546.1| hypothetical protein VEIDISOL_01426 [Veillonella dispar ATCC 17748]
Length = 241
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 14/144 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALT 61
+ AY DG+ + G G ++ G K S N EL+AA+ +
Sbjct: 105 DHIIAYIDGSYNKGTNTVGSGGVIFLNGTRKTFSFPSTDERYTAFWNVSGELLAAMYVMK 164
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
Y+ + + + + +V
Sbjct: 165 YAVDHGIPECSLYYDYMGIEMWATKRW---------KRNNALTQQYAAFYDSIKNRVRVH 215
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
+ + H G+ NE D +A+ A
Sbjct: 216 FHKVAAHTGDTYNEMADALAKQGA 239
>gi|225027246|ref|ZP_03716438.1| hypothetical protein EUBHAL_01502 [Eubacterium hallii DSM 3353]
gi|224955399|gb|EEG36608.1| hypothetical protein EUBHAL_01502 [Eubacterium hallii DSM 3353]
Length = 233
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 3/144 (2%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ + + Y DG+ + +G ++ + I G E A +
Sbjct: 74 LTTSTSDRLVVYVDGSFDVSIQKYSFGCVILLEDGRIIERSGNGEEPELLAIRNVAGE-- 131
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V ++ Y + ++ K + +V
Sbjct: 132 -MHGAMYAVQWAFENGYSSVVIHYDYEGIEKWATGVWSAKNPHTKKYAAFMKRMQEKIEV 190
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+K H+G+ NE+VD++A+ A
Sbjct: 191 IFQKVKAHSGDFYNERVDKLAKKA 214
>gi|70726474|ref|YP_253388.1| hypothetical protein SH1473 [Staphylococcus haemolyticus JCSC1435]
gi|68447198|dbj|BAE04782.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 133
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 17/144 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A GNPG G++++ ++ + + E N+ E A I AL + V
Sbjct: 3 KIYFDAATRGNPGRSACGIVIKENDEKYVYTHDLGELDNHSAEWAALIHALEHARELNVV 62
Query: 70 L--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LYTDS + +Q K + + + + + V + W+
Sbjct: 63 NALLYTDSKLIEDSVNQGFVKSARFKPYYENLE-----------ILEKSFELVFVKWVP- 110
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
++N++ +++A+ A K
Sbjct: 111 ---REQNKEANQMAQQALFKLIKK 131
>gi|309804065|ref|ZP_07698146.1| ribonuclease HI [Lactobacillus iners LactinV 11V1-d]
gi|325913698|ref|ZP_08176060.1| ribonuclease HI [Lactobacillus iners UPII 60-B]
gi|329919757|ref|ZP_08276708.1| ribonuclease HI [Lactobacillus iners SPIN 1401G]
gi|308163833|gb|EFO66099.1| ribonuclease HI [Lactobacillus iners LactinV 11V1-d]
gi|325477057|gb|EGC80207.1| ribonuclease HI [Lactobacillus iners UPII 60-B]
gi|328937104|gb|EGG33532.1| ribonuclease HI [Lactobacillus iners SPIN 1401G]
Length = 216
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDETCSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNKKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|281412917|ref|YP_003346996.1| ribonuclease H [Thermotoga naphthophila RKU-10]
gi|281374020|gb|ADA67582.1| ribonuclease H [Thermotoga naphthophila RKU-10]
Length = 219
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D + + AY DG+ G GV+L Y K +E E ++R +
Sbjct: 59 LDEETM---IAYVDGSYDV---VCGSGVVLCYRGKKEEYYFWTDIDEFKDSRNIAGEIMA 112
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ K + + K+ V + ++ +
Sbjct: 113 ALFAMDCALKKGAKR-----LILRHDLEGLEKWATEEYRTKEPVTRVYKYLYEQFCRSGL 167
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+V +K H+G+ N++ DR+A+ AA N
Sbjct: 168 EVVFEKVKSHSGDFCNDEADRLAKEAAKKRSN 199
>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
Length = 486
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 8/141 (5%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ R + YTDG+ N G + +Y G + E+T EL + AL +
Sbjct: 178 RAPRPIALYTDGSGI-NGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVII 236
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + + + + A V
Sbjct: 237 LQRQM-------QHAVIFTDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFR 289
Query: 124 WIKGHAGNQENEKVDRIARNA 144
WI H G + NE+ DR A+ A
Sbjct: 290 WIPAHRGVEGNEQADRRAKEA 310
>gi|187969386|gb|ACD44836.1| pol protein [Simian foamy virus]
Length = 335
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKGNNAGMGIVHASYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E A +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLAIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|313892796|ref|ZP_07826377.1| ribonuclease HI [Veillonella sp. oral taxon 158 str. F0412]
gi|313442727|gb|EFR61138.1| ribonuclease HI [Veillonella sp. oral taxon 158 str. F0412]
Length = 238
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKA 59
L V AY DG+ + G G ++ G + S N EL+AA+
Sbjct: 100 KLNHVVAYIDGSYNKGTNTVGAGGVIFLNGNRETFSFPSTDERYTSFWNVAGELLAAMYV 159
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ Y+ + + + +
Sbjct: 160 MKYAVDRGVSECSLYYDYMGIEMWATKGW---------KRNNALTQQYAAFYDSIKDRVR 210
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V + + H G+ NE D +A+ A
Sbjct: 211 VHFHKVAAHTGDTYNEMADALAKQGA 236
>gi|225710774|gb|ACO11233.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 291
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%)
Query: 9 VHAYTDGACSGNPGPGGWG---VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V +TDGAC N G G + + N + + AI +
Sbjct: 142 VKVFTDGACIHNGRGGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISRAIHIVK 201
Query: 66 PC---KVLLYTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVD 121
K+ +YTDS + + W++ W S + V+N ++ + +
Sbjct: 202 SDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFLVLDDIMKNMTIK 261
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
++ GH N D++AR + + K
Sbjct: 262 FIYVPGHRNIYGNNCADKLARRGSGNTK 289
>gi|156062308|ref|XP_001597076.1| hypothetical protein SS1G_01270 [Sclerotinia sclerotiorum 1980]
gi|154696606|gb|EDN96344.1| hypothetical protein SS1G_01270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 374
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
++ ++DG+ S + GG V+ ++ + S T +E MAA+
Sbjct: 75 DIQIFSDGSKSESKDGAIGGNFVITQFDIQVAHYSFSLGINTEVFDVEAMAAVTGAAKAL 134
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
+ L TD + ++ + H K+
Sbjct: 135 ALPSIKLATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLTQAWAARPRLPHIPPGKI 194
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++W+ GH NE D+ A+ A
Sbjct: 195 RIHWVPGHLNIPGNEMADKAAKEGAK 220
>gi|89514110|gb|ABD74911.1| ribonuclease HI [Sinorhizobium fredii]
Length = 181
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+++ +DS + KG + W+ W++N W+ SDK+ V+N DLW++ + W KGH
Sbjct: 6 IVIRSDSQLLIKGMTTWLANWKRNSWRKSDKRPVENQDLWIQLDALVEGKNLRWEWTKGH 65
Query: 129 AGNQENEKVDRIARNAAV 146
G+ NE+ DR AR A
Sbjct: 66 NGDAYNEEADRPARQAMR 83
>gi|189212599|gb|ACD84892.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKEKI----ISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKGNNAGMGIVHASYKPEYQILDQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|284165858|ref|YP_003404137.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
gi|284015513|gb|ADB61464.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
Length = 197
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCK 68
H Y DG GNPGP G ++ TNN+ E A I L A +
Sbjct: 70 HVYFDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLKAARD--- 126
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
Y +G S+ I K + + T++ + + + + A W +
Sbjct: 127 ---YGYDEVHIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLGAFD------EWTLEY 177
Query: 129 AGNQENEKVDRIARNAAVSF 148
+ NE+ D + A +
Sbjct: 178 VPREVNERADGLVNEALDAA 197
>gi|210621158|ref|ZP_03292500.1| hypothetical protein CLOHIR_00443 [Clostridium hiranonis DSM 13275]
gi|210154895|gb|EEA85901.1| hypothetical protein CLOHIR_00443 [Clostridium hiranonis DSM 13275]
Length = 478
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 3/140 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDG+ G ++ KE + + + + A
Sbjct: 269 KILKIYTDGSYCEATKKYGAAFVVIEADKEIYRYSYAERDITGKKNISGELVAAMRALEW 328
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ Y+D ++ S D + M + V+ I+
Sbjct: 329 VFITKYSDEIEINHDLSFIKDICTNKINPKIDYGKILKQLYNMCIKDGI---SVNFNEIE 385
Query: 127 GHAGNQENEKVDRIARNAAV 146
H+GN N VD++A+ A
Sbjct: 386 SHSGNYWNNFVDKLAKKVAK 405
>gi|229009298|ref|ZP_04166583.1| Ribonuclease H-related protein [Bacillus mycoides Rock1-4]
gi|228751955|gb|EEM01697.1| Ribonuclease H-related protein [Bacillus mycoides Rock1-4]
Length = 220
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 3/136 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y DG+ + G+G+++ + + + ++ +
Sbjct: 85 IEVYIDGSYNMKRKIAGYGLVMIVQNQVYLKDFSAYPYSDVTATHNV---GAELMGARRA 141
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L + + H + K+ K + + + + +K H
Sbjct: 142 VELALANGWKHMILYYDYTGIENFATKSWRAKNPQTQEYQDFMQKYMRNINIQFIKVKAH 201
Query: 129 AGNQENEKVDRIARNA 144
+GN+ N+ DR+A+ A
Sbjct: 202 SGNEFNDLADRLAKYA 217
>gi|313216104|emb|CBY37476.1| unnamed protein product [Oikopleura dioica]
Length = 167
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 12 YTDGACSGNPGPG----GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
YTDG+C GN G G G++ + IS + + AL A+++
Sbjct: 27 YTDGSCKGNHQHGRRYSGSGIVFGD-HPRREISQPCHPKDPSTNQHAELKAALIAIRHAR 85
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K L + +K + + ++ VD +I
Sbjct: 86 KFNLGR----LQIRTDSKFLISIVPHFKNGGNLVPHLAVIIEEIIDLMDFVDVDFIYIPA 141
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
H Q NE+ D +A+ AA +
Sbjct: 142 HINEQGNERADFLAKKAADIHR 163
>gi|50552380|ref|XP_503600.1| YALI0E05775p [Yarrowia lipolytica]
gi|49649469|emb|CAG79181.1| YALI0E05775p [Yarrowia lipolytica]
Length = 907
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 15/150 (10%)
Query: 10 HAYTDGAC-------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-----I 57
YTDG+ N G GWGV E T R E++A I
Sbjct: 715 VVYTDGSHNALPSPLLYNAGAAGWGVHFEKGLMPDACGRVPGEQTPGRAEILAMVMAIRI 774
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ K + TDS + + + + S L E
Sbjct: 775 ISRHMTYRSQKWEIRTDSLWTLRLLEHGWEGLEPTERMRSHPNYYLIKRLRALLYENQ-- 832
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L +I+ + D++A+ A
Sbjct: 833 -NISLRFIRSQHMHSGARIADKLAKKGARK 861
>gi|312794240|ref|YP_004027163.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181380|gb|ADQ41550.1| ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 199
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTA--LKYPC 67
Y DGA GNPGP G G+++ S TNN E +A I+ L
Sbjct: 5 YFDGASKGNPGPAGAGIVIVNPEGRVILEYSKELGIRTNNEAEYLALIELLQKALELGIR 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ + DS V KV WI
Sbjct: 65 ELEIMGDSQLVINQVFGNWNI----------NMPHLYTLYNQATELLEKFDKVKARWIP- 113
Query: 128 HAGNQENEKVDRIARNAAV 146
++N+ D ++ A
Sbjct: 114 ---REKNQLADSLSNKAIT 129
>gi|309804858|ref|ZP_07698920.1| ribonuclease HI [Lactobacillus iners LactinV 09V1-c]
gi|308165797|gb|EFO68018.1| ribonuclease HI [Lactobacillus iners LactinV 09V1-c]
Length = 216
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDETCSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|309805946|ref|ZP_07699974.1| ribonuclease HI [Lactobacillus iners LactinV 03V1-b]
gi|312871277|ref|ZP_07731375.1| ribonuclease HI [Lactobacillus iners LEAF 3008A-a]
gi|308167659|gb|EFO69810.1| ribonuclease HI [Lactobacillus iners LactinV 03V1-b]
gi|311093291|gb|EFQ51637.1| ribonuclease HI [Lactobacillus iners LEAF 3008A-a]
Length = 216
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDETCSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNKKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|118380541|ref|XP_001023434.1| RNase H family protein [Tetrahymena thermophila]
gi|89305201|gb|EAS03189.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 288
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 17/143 (11%)
Query: 11 AYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--PC 67
+ DGA NPGP G G + K + TNN+ E +A + L +
Sbjct: 144 LFFDGASKNNPGPSGIGFAIFDNDQKLYQQAIHTGFKTNNQAEYLALLYGLKSSLSLGIE 203
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +Y DS + + + + + K + +H V+ +I
Sbjct: 204 FLNVYGDSQLIINQMN---------NLYRVKDRNLILYNGECKQLRTQFKH-VNFKYIP- 252
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
++N D +A +K
Sbjct: 253 ---REQNSLADSLANKGVTLYKK 272
>gi|153852870|ref|ZP_01994307.1| hypothetical protein DORLON_00289 [Dorea longicatena DSM 13814]
gi|149754512|gb|EDM64443.1| hypothetical protein DORLON_00289 [Dorea longicatena DSM 13814]
Length = 218
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 11/145 (7%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKA 59
+++ V AY DG+ + G +G ++ E K SG + E R + A
Sbjct: 72 PENM--VIAYVDGSFEKSIGRYAFGCVILTPAGEEFRKSGSGCDPEGVKIRNVAGEMLGA 129
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ A+++ + Y + ++ KT EA+ Q K
Sbjct: 130 MNAVQWA------KEHEYPAVEIRYDYEGVEKWVTGVWRAKTPLTSKYAAHMQEAAEQIK 183
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ + H GN NE+ D++A++A
Sbjct: 184 ISFCKVAAHTGNHYNEEADQLAKSA 208
>gi|585901|sp|Q07762|RNH1_CRIFA RecName: Full=Ribonuclease H; Short=RNase H
gi|310977|gb|AAA03546.1| ribonuclease H [Crithidia fasciculata]
Length = 494
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 65/214 (30%), Gaps = 75/214 (35%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKE---TTNNRMELMAAIKALTAL 63
Y DGACS N P G+G + S TNNR E+ A I +
Sbjct: 277 VVYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQG 336
Query: 64 KYPCKVLL---------------------------YTDSSYVHKGFSQWIKKWQQNGWKT 96
V YTDS YV G +++ KW NG+K
Sbjct: 337 FVDAGVPPAALGTSHCVEPDWELSELPQPLRRLVIYTDSRYVIDGLTRYALKWVANGFKL 396
Query: 97 SDKKTVKNIDLWMKFVE----------------------------------ASAQHK--- 119
+ K+ V N DLW + + H
Sbjct: 397 ASKEPVLNQDLWRQLIRLRDAYNTRYAEQQHWAAATCSHASTRVPAASQSKRFHTHNTRN 456
Query: 120 -----VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++L +KGH+ + NE D +A A
Sbjct: 457 DETEGIELRHVKGHSNDYGNEMADVLAVAGARMH 490
>gi|222530387|ref|YP_002574269.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
gi|222457234|gb|ACM61496.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
Length = 198
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 12 YTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
Y DGA GNPGP G G+++ S TNN E +A I+ L
Sbjct: 5 YFDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIK 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ + DS V KV WI
Sbjct: 65 ELEVQGDSQLVINQVFGNWNI----------NMPHLYSLYEQATELLEKFDKVKARWIP- 113
Query: 128 HAGNQENEKVDRIARNAAVS 147
++N+ D ++ A
Sbjct: 114 ---REKNQLADLLSNKAITK 130
>gi|190344330|gb|EDK35986.2| hypothetical protein PGUG_00084 [Meyerozyma guilliermondii ATCC
6260]
Length = 264
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIKALTALK 64
+ DGA G+ G+GV + E N R EL A I ++
Sbjct: 60 KIFIDGAFQGDQC--GYGVWYGDDDPRNAAVPLFQAKEELPLNNQRAELRAMIHVFRNIQ 117
Query: 65 YP---------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK----- 110
+ ++ TDS K + W KW++NGWKT+ + + N DL +
Sbjct: 118 QEIESNNGIPLKEYVILTDSQATIKALTIWSVKWKKNGWKTTKGEIIANKDLISEAVELL 177
Query: 111 ----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
++ ++ + + GHAG NE+ D++A AA
Sbjct: 178 ESLEQYYRTSDLRLAIEHVYGHAGVHGNEEADKLATFAA 216
>gi|189212625|gb|ACD84905.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + K+ +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWRSNGFVNNKKRPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|225375929|ref|ZP_03753150.1| hypothetical protein ROSEINA2194_01565 [Roseburia inulinivorans DSM
16841]
gi|225212250|gb|EEG94604.1| hypothetical protein ROSEINA2194_01565 [Roseburia inulinivorans DSM
16841]
Length = 211
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKAL 60
+ V+A+ DG+ + G+G L + G++++ SG + E + R +
Sbjct: 69 QEQNPAVYAFVDGSYNIATKVYGYGGFLIHNGEKEVLQGSGNDAEMASMRNVSGEIL--- 125
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V + + + I + A + ++
Sbjct: 126 ---GAMAAVERAIELKLPEVTIYYDYMGIEMWAEGAWKRNRQGTIAYYDYMQSAKNKIRI 182
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+KGH+G NE+ DR+A+ A
Sbjct: 183 KFVKVKGHSGVDGNEEADRLAKEA 206
>gi|269797718|ref|YP_003311618.1| ribonuclease H [Veillonella parvula DSM 2008]
gi|269094347|gb|ACZ24338.1| ribonuclease H [Veillonella parvula DSM 2008]
Length = 241
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKA 59
+ AY DG+ + G G ++ GK K S N EL+AA+
Sbjct: 103 TPNYMVAYIDGSYNKETNTVGAGGVIFLNGKRKTFSFSSTDKRYTSFWNVAGELLAAMHV 162
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ Y+ + + + + +
Sbjct: 163 MKYAVDSGISECSLYYDYMGIEMWATKGW---------KRNNELTQEYSAFYDSIKNRVR 213
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V + + H G+ NE D +A+ A
Sbjct: 214 VYFHKVAAHTGDTYNEMADALAKQGA 239
>gi|208434583|ref|YP_002266249.1| ribonuclease H [Helicobacter pylori G27]
gi|208432512|gb|ACI27383.1| ribonuclease H [Helicobacter pylori G27]
Length = 98
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
MEL A +AL LK PC + LY+DS YV + + W+ WQ + VKN+DLW +
Sbjct: 1 MELRALNEALKILKRPCHITLYSDSQYVCQAINVWLANWQ-----KKNFSKVKNVDLWKE 55
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
F++ S H + WIKGH G+ ENE+ D +A+ A
Sbjct: 56 FLKVSKGHLIVAVWIKGHNGHAENERCDSLAKLEAQK 92
>gi|146421896|ref|XP_001486891.1| hypothetical protein PGUG_00268 [Meyerozyma guilliermondii ATCC
6260]
gi|146388012|gb|EDK36170.1| hypothetical protein PGUG_00268 [Meyerozyma guilliermondii ATCC
6260]
Length = 152
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 25 GWGVLLRYKGKEKI----ISGGEKETTNNRMELMAAIK-------ALTALKYPCKVLLYT 73
G+GV + + S + T+ R EL A L + +++T
Sbjct: 8 GYGVFYGDGDERNVAVALSSVDDIPGTSQRAELHALDHAVSNIADFLDEYNPDKEYVIHT 67
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKK----------TVKNIDLWMKFVEASAQHKVDLY 123
DS YV K + WIKKW+ NGW TS K N++ K +E + V L
Sbjct: 68 DSQYVIKATTVWIKKWKSNGWTTSYGKSVANQDLIKRIFSNLNRINKELEDNGFSAVKLE 127
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
+ GH+G+ NE D++A A
Sbjct: 128 HVAGHSGDYGNEMADQLANEGAD 150
>gi|126322620|ref|XP_001380999.1| PREDICTED: similar to gag-pro-pol polyprotein [Monodelphis
domestica]
Length = 3183
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 7/151 (4%)
Query: 5 HLREVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
E+ +TDG+ P G G + + + E T+ + + A++A
Sbjct: 837 PNPELVYFTDGSSFITPSGARVAGAAVVNDEGIVVWAAKLPEGTSAQRAELLALEAALRA 896
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDL 122
+V +YTDS Y +++ G+ TS K + ++ + + +V +
Sbjct: 897 ARGKRVNIYTDSRYAFATLHVHAPIYRERGYVTSTGKPIAHLRNIQELLGAVWEPRQVSV 956
Query: 123 YWIKGHA---GNQ--ENEKVDRIARNAAVSF 148
I GH + N D AR AA+
Sbjct: 957 IHIPGHQKGDSHPALGNRWADEAARKAAIQA 987
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 7/151 (4%)
Query: 5 HLREVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
E+ +TDG+ P G G + + + E T+ + + A++A
Sbjct: 2625 PNPELVYFTDGSSFITPSGARVAGAAVVNDEGIVVWAAKLPEGTSAQRAELLALEAALRA 2684
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDL 122
+V +YTDS Y +++ G+ TS K + ++ + + +V +
Sbjct: 2685 ARGKRVNIYTDSRYAFATLHVHAPIYRERGYVTSTGKPIAHLRNIQELLGAVWEPRQVSV 2744
Query: 123 YWIKGHA---GNQ--ENEKVDRIARNAAVSF 148
GH + N D AR AA+
Sbjct: 2745 IHTPGHQKGDSHPALGNRWADEAARKAAIQA 2775
>gi|224541141|ref|ZP_03681680.1| hypothetical protein CATMIT_00293 [Catenibacterium mitsuokai DSM
15897]
gi|224525950|gb|EEF95055.1| hypothetical protein CATMIT_00293 [Catenibacterium mitsuokai DSM
15897]
Length = 196
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 2/136 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G+G +L + G + A
Sbjct: 59 LIAYVDGSFNAKKKVYGYGAVLIDGQQVIKRLYGHGDNEECLSSRNVA--GEIFGALAAV 116
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
Y ++ + E + + ++ H
Sbjct: 117 KYAVEHPEYDGIVIYYDYMGIEKWAIGEWKANKKLTQYYASQMAEYRQKLPIVFMKVEAH 176
Query: 129 AGNQENEKVDRIARNA 144
G+ NE+ D++A+ A
Sbjct: 177 TGDFYNEQADQLAKKA 192
>gi|187969390|gb|ACD44838.1| pol protein [Simian foamy virus]
Length = 335
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAIYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|9626105|ref|NP_056803.1| pol polyprotein [Simian foamy virus]
gi|75651203|sp|Q87040|POL_SFVCP RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Protease/Reverse transcriptase; AltName:
Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H;
Short=RNase H; Contains: RecName: Full=Integrase;
Short=IN; AltName: Full=p42In
gi|514843|gb|AAA19978.1| N-terminus uncertain [Simian foamy virus]
Length = 1146
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 13 TDGACSGNPGP-----GGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKY- 65
TDG+ +P P G G++ Y + KI++ ++ ++ A K
Sbjct: 598 TDGSAIKSPDPTKSNNAGMGIVHAIYNPEYKILNQWSIPLGHHTAQMAEIAAVEFACKKA 657
Query: 66 ---PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVD 121
P VL+ TDS YV + ++ + W+ NG+ + K+ +K+I W E + +
Sbjct: 658 LKVPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKEPLKHISKWKSIAECLSIKPDIT 717
Query: 122 LYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 718 IQHEKGHQPINTSIHTEGNALADKLATQG 746
>gi|296423236|ref|XP_002841161.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637395|emb|CAZ85352.1| unnamed protein product [Tuber melanosporum]
Length = 564
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 8/149 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
REV +TDG+ N G V + G+ K + G T EL A KA+
Sbjct: 350 REVVVFTDGS--KNGLEAGAAVWRKADSRGGEIKKMYGLGTRMTIYDAELYAIWKAIGLG 407
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ SQ G MK + + V L
Sbjct: 408 GRVAR--ERGAKKLTICADSQAALGVMARGTIGPGSHLALRGRAQMKDLHHTHGIDVALE 465
Query: 124 WIKGHAGNQENEKVDRIARNA-AVSFKNK 151
W++ HAG + N +VD++AR A A+ K K
Sbjct: 466 WVRSHAGIRGNIRVDKLARAACAIRQKQK 494
>gi|309808593|ref|ZP_07702486.1| ribonuclease HI [Lactobacillus iners LactinV 01V1-a]
gi|309809731|ref|ZP_07703585.1| ribonuclease HI [Lactobacillus iners SPIN 2503V10-D]
gi|312873264|ref|ZP_07733319.1| ribonuclease HI [Lactobacillus iners LEAF 2052A-d]
gi|308168164|gb|EFO70289.1| ribonuclease HI [Lactobacillus iners LactinV 01V1-a]
gi|308169910|gb|EFO71949.1| ribonuclease HI [Lactobacillus iners SPIN 2503V10-D]
gi|311091144|gb|EFQ49533.1| ribonuclease HI [Lactobacillus iners LEAF 2052A-d]
Length = 216
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVQKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|293380762|ref|ZP_06626809.1| ribonuclease HI [Lactobacillus crispatus 214-1]
gi|290922674|gb|EFD99629.1| ribonuclease HI [Lactobacillus crispatus 214-1]
Length = 256
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + ++ SGGE TNN+ME A I
Sbjct: 104 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINAL 162
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K L +L DS YV +++ + + + N+ W +
Sbjct: 163 KKLLELGFNDKHLLFVLDSQYVLNAINKYWLQGWKKRGWRRSSGPLANVAEWQELDRLLK 222
Query: 117 QH-KVDLYWIKGHAGNQENEKVDR 139
+ W KGHA N+ NE VD
Sbjct: 223 EFPDSTFEWTKGHANNRGNEFVDH 246
>gi|312872741|ref|ZP_07732806.1| ribonuclease HI [Lactobacillus iners LEAF 2062A-h1]
gi|315654088|ref|ZP_07907004.1| ribonuclease HI [Lactobacillus iners ATCC 55195]
gi|311091783|gb|EFQ50162.1| ribonuclease HI [Lactobacillus iners LEAF 2062A-h1]
gi|315488784|gb|EFU78430.1| ribonuclease HI [Lactobacillus iners ATCC 55195]
Length = 216
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNKKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|325912279|ref|ZP_08174676.1| ribonuclease HI [Lactobacillus iners UPII 143-D]
gi|325475938|gb|EGC79107.1| ribonuclease HI [Lactobacillus iners UPII 143-D]
Length = 216
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K +W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFFWVKGHADSEGNNYVDRKLNEYMD 213
>gi|170581679|ref|XP_001895788.1| RNase H family protein [Brugia malayi]
gi|158597153|gb|EDP35372.1| RNase H family protein [Brugia malayi]
Length = 262
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK------ 58
+L V YTDG+C + G G+ N + + A K
Sbjct: 61 NLPPVVIYTDGSCIDHYA-SGIGIYFGPNHPLNKSKAIHGHEHNXGLAEIIAAKTALKSL 119
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L ++L TD + + + + +K + +
Sbjct: 120 RKWNLYKGENIILRTDFLPLIYAMNNDGYNGRFHEEYFK-----------LKRLARKFPN 168
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V + GH G NE+ + +AR A ++ +
Sbjct: 169 GVQFEHVFGHEGEHGNEEANNLARRATMAAR 199
>gi|302503386|ref|XP_003013653.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
gi|291177218|gb|EFE33013.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
+LR + DGAC N GV + K + N+ +AA I L
Sbjct: 37 NLRSIIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGL 96
Query: 61 TALKYPCK----------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
A + V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N L+ +
Sbjct: 97 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKE 156
Query: 111 FVEASAQHKVDLYWIK---GHAGNQENEKVDRIARNA 144
+ + +K H + N + D++AR+A
Sbjct: 157 L--SWRVRDLAESHVKVYFWHVRREHNREADQLARDA 191
>gi|222100258|ref|YP_002534826.1| Ribonuclease H [Thermotoga neapolitana DSM 4359]
gi|221572648|gb|ACM23460.1| Ribonuclease H [Thermotoga neapolitana DSM 4359]
Length = 225
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D + + AY DG+ G GV+L Y K +E E ++R +
Sbjct: 62 LDEETM---IAYVDGSYDV---VCGSGVVLCYRGKKEEYYFWTDIDEFKDSRNIAGEIMA 115
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ K + + K+ V + ++ +
Sbjct: 116 ALFAMDCALKKGAKR-----LILRHDLEGLEKWATEEYRTKEPVTRVYKYLYEQFCRSGL 170
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+V +K H+G+ N++ DR+A+ AA N
Sbjct: 171 EVVFEKVKSHSGDFCNDEADRLAKEAAKKRSN 202
>gi|259500819|ref|ZP_05743721.1| ribonuclease HI [Lactobacillus iners DSM 13335]
gi|302190729|ref|ZP_07266983.1| ribonuclease HI [Lactobacillus iners AB-1]
gi|259167513|gb|EEW52008.1| ribonuclease HI [Lactobacillus iners DSM 13335]
Length = 216
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNKKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFVWVKGHADSEGNNYVDRKLNEYMD 213
>gi|189212597|gb|ACD84891.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAIYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|303231131|ref|ZP_07317871.1| ribonuclease HI [Veillonella atypica ACS-049-V-Sch6]
gi|302514262|gb|EFL56264.1| ribonuclease HI [Veillonella atypica ACS-049-V-Sch6]
Length = 220
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 14/153 (9%)
Query: 2 DSKHLREVHAYTDGAC-SGNPGPGGWGVLLRYKGKEKIISG----GEKETTNNRMELMAA 56
D + AY DG+ N G G++ KE G E N EL+AA
Sbjct: 77 DFSEPNHLIAYIDGSYDKYNQSVGSGGIMFLNGDKETFSFGTLDAKYTEFWNVSGELLAA 136
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ + Y+ K + N +
Sbjct: 137 MHVMQYALTHGIPKCSLYYDYMGIEMWATKKWKRNNVLTN---------EYATFCEGIFP 187
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
KV + + H G+ NE D++A+ A K
Sbjct: 188 HVKVCFHKVHAHTGDTYNEMADQLAKAGAAKGK 220
>gi|312621760|ref|YP_004023373.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002]
gi|312202227|gb|ADQ45554.1| ribonuclease H [Caldicellulosiruptor kronotskyensis 2002]
Length = 469
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 3/138 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+V AY DG+ + + +G ++ K E N + L + +K+
Sbjct: 65 NQVIAYVDGSYNESLNKCAFGCVILTKEGE-EQKFSSVIANNEIVSLRNVAGEIEGVKFA 123
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K + + G ++ K D S K++ +
Sbjct: 124 VKWACEKEYEKIIICHDYEGLSKWYYGEWQANSK--YVKDYIEFLRSYSDFIKIEFKKVT 181
Query: 127 GHAGNQENEKVDRIARNA 144
H+G++ NE D +AR A
Sbjct: 182 AHSGDKYNELADLLAREA 199
>gi|294793484|ref|ZP_06758621.1| putative ribonuclease H1 [Veillonella sp. 3_1_44]
gi|294455054|gb|EFG23426.1| putative ribonuclease H1 [Veillonella sp. 3_1_44]
Length = 241
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKA 59
+ AY DG+ + G G ++ GK K S N EL+AA+
Sbjct: 103 TPNYMVAYIDGSYNKETNTVGAGGVIFLNGKRKTFSFSSTDKRYTSFWNVAGELLAAMHV 162
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ Y+ + + + + +
Sbjct: 163 MKYAVDNGISECSLYYDYMGIEMWATKGW---------KRNNELTQEYSAFYDSIKNRVR 213
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V + + H G+ NE D +A+ A
Sbjct: 214 VYFHKVAAHTGDTYNEMADALAKQGA 239
>gi|189212603|gb|ACD84894.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAIYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|50543600|ref|XP_499966.1| YALI0A10989p [Yarrowia lipolytica]
gi|49645831|emb|CAG83895.1| YALI0A10989p [Yarrowia lipolytica]
Length = 606
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 10 HAYTDGACS-GNPGP--GGWGVLLRYKGKEKIISGGEKE-TTNNRMELMAAIKALTALKY 65
++DG+ + G GG+GV + + + + + EL ++A
Sbjct: 419 EVFSDGSSKVDSDGKQWGGFGVWFGHYHPDNVAGPLTGDLQDPLQGELRGLLEAY----- 473
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
KVL ++ + Q+ S + I ++ + KV L I
Sbjct: 474 --KVLYNRHDDLLYTIYCDCYAVVQKLNAGKSFPRKYHTIVTSIQLYKQLLGMKVMLRHI 531
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G+ NE+ D +A+
Sbjct: 532 VGHCGHPGNERADILAKMG 550
>gi|189212595|gb|ACD84890.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAIYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ +GH + N D++A
Sbjct: 146 TIQHERGHQPMNTSIHTEGNALADKLATQG 175
>gi|108800308|ref|YP_640505.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MCS]
gi|119869436|ref|YP_939388.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. KMS]
gi|126435931|ref|YP_001071622.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JLS]
gi|108770727|gb|ABG09449.1| Phosphoglycerate mutase [Mycobacterium sp. MCS]
gi|119695525|gb|ABL92598.1| Phosphoglycerate mutase [Mycobacterium sp. KMS]
gi|126235731|gb|ABN99131.1| Phosphoglycerate mutase [Mycobacterium sp. JLS]
Length = 365
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + + TNN E I L
Sbjct: 1 MK-VLVEADGGSRGNPGPAGYGSVVWSEDRSSVLAEAKQSIGRATNNVAEYRGLIAGLEE 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ S+ I + W+ + + E +V
Sbjct: 60 AANVGA------TEVAVSMDSKLIVEQMAGRWRVKHPDLIPLYQRARELAEGFD--RVTY 111
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
WI N + DR+A A + +
Sbjct: 112 SWIP----RAANARADRLANEAMDAAQ 134
>gi|38234249|ref|NP_940016.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
NCTC 13129]
gi|38200511|emb|CAE50207.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 377
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 45/148 (30%), Gaps = 20/148 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPG G G L+ + K S + TNN E + L
Sbjct: 1 MK-VIIEADGGSRGNPGIAGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRG 59
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + S K AS+ V
Sbjct: 60 AAELGATEVSVRMDSKLVVEQMSGRW----------KIKHPDMKELALECKKVASSIGSV 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
WI EN D +A A +
Sbjct: 110 SYEWIP----RSENSHADALANKAMDAL 133
>gi|312874880|ref|ZP_07734899.1| ribonuclease HI [Lactobacillus iners LEAF 2053A-b]
gi|311089625|gb|EFQ48050.1| ribonuclease HI [Lactobacillus iners LEAF 2053A-b]
Length = 216
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 17/155 (10%)
Query: 8 EVHAYTDGACSGNP----------GPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
++ YTDG C N W +R K + I G E+ TNN+MEL
Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119
Query: 56 AIKALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
I+A+ K+ DS YV + + TS K+ ++
Sbjct: 120 LIEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEP 179
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ +K W+KGHA ++ N VDR
Sbjct: 180 LLQECTNK-SFVWVKGHADSEGNNYVDRKLNEYMD 213
>gi|168207038|ref|ZP_02633043.1| ribonuclease H (RNase H) [Clostridium perfringens E str. JGS1987]
gi|170661597|gb|EDT14280.1| ribonuclease H (RNase H) [Clostridium perfringens E str. JGS1987]
Length = 203
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 3/141 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y DG+ + G+G++L E II + L + +
Sbjct: 66 IVFYVDGSFNEKTKNVGYGLVLI-MDDEVIIKDLGTTHPHEETSLRNVLGEVKGAIKATD 124
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ L + + + G + + K++ +K H
Sbjct: 125 IALANGYKEITIVYDYVGIEKWAKGEWNAKNE--VTKYYKKIMKNRMKYMKINFRKVKSH 182
Query: 129 AGNQENEKVDRIARNAAVSFK 149
+ ++ N++ DR+A+ + +FK
Sbjct: 183 SNDKWNDEADRLAKIGSGTFK 203
>gi|299535151|ref|ZP_07048476.1| ribonuclease H [Lysinibacillus fusiformis ZC1]
gi|298729468|gb|EFI70018.1| ribonuclease H [Lysinibacillus fusiformis ZC1]
Length = 130
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A +GNPGP G GV ++ +G IS ET N+ E A ++ L +
Sbjct: 2 LEVYIDAASAGNPGPSGIGVFIKGEGHHIQISEYIGETNNHIAEFSALVRGLEEAQKLGS 61
Query: 69 --VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V + +DS V + K ++ + + W+
Sbjct: 62 PLVSVRSDSKIVVASMEKEYVKNEEFKPYLEKALALATSFDL-----------FFIKWVP 110
Query: 127 GHAGNQENEKVDRIARNAAVS 147
+ +N+ D +AR A S
Sbjct: 111 ----DSQNKAADALARKAIQS 127
>gi|289432255|ref|YP_003462128.1| ribonuclease H [Dehalococcoides sp. GT]
gi|288945975|gb|ADC73672.1| ribonuclease H [Dehalococcoides sp. GT]
Length = 134
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ ++ TDGA GNPGP GV L+ IS TNN+ E A + L
Sbjct: 1 MSKIIINTDGASRGNPGPASIGVTLKDEKNNPVACISKAIGHATNNQAEYQALLAGLEKA 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ S+ + K + ++ ++ + + ++++
Sbjct: 61 ASLGA------KELEIRSDSELLVKQIKGEYRMKNEGLKPLFSKAVSLLGRFERYQIKY- 113
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+N + D +A A
Sbjct: 114 -----IPRAQNSEADALANKA 129
>gi|282848991|ref|ZP_06258380.1| ribonuclease HI [Veillonella parvula ATCC 17745]
gi|282581266|gb|EFB86660.1| ribonuclease HI [Veillonella parvula ATCC 17745]
Length = 241
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKA 59
+ AY DG+ + G G ++ GK K S N EL+AA+
Sbjct: 103 TPNYMVAYIDGSYNKETNTVGAGGVIFLNGKRKTFSFSSTDKRYTSFWNVAGELLAAMHV 162
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ Y+ + + + + +
Sbjct: 163 MKYAVDNGISECSLYYDYMGIEMWATKGW---------KRNNELTQEYSAFYDSIKNRVR 213
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V + + H G+ NE D +A+ A
Sbjct: 214 VYFHKVVAHTGDTYNEMADALAKQGA 239
>gi|156039247|ref|XP_001586731.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980]
gi|154697497|gb|EDN97235.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 374
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLL-RYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
++ ++DG+ G G G ++ ++ + S E MAA+
Sbjct: 75 DIQIFSDGSKSESKDGATGGGFVITQFDIQVAQYSFSLGTNAEVFDAEAMAAVTGAAKAL 134
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
+ L TD + ++ + H K+
Sbjct: 135 ALPSIKLATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLKQAWAARPRLSHIPPGKI 194
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++W+ GH NE D+ A+ A
Sbjct: 195 RIHWVPGHLNIPGNEMADKAAKEGAK 220
>gi|189212615|gb|ACD84900.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTKGNALADKLATQG 175
>gi|75051596|sp|Q9TTC1|POL_KORV RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Integrase; Short=IN; AltName: Full=p42In
gi|6524624|gb|AAF15098.1| pol protein [Phascolarctos cinereus]
Length = 1127
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G ++ K + + E T+ + + A+ L +
Sbjct: 600 YTDGSSFIMDGRRQAGAAIV---DNKRTVWASNLPEGTSAQKAELIALTQALRLAEGKSI 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 657 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGH 716
Query: 129 A--GNQ---ENEKVDRIARNAAVSFK 149
+ N K D A+ AA S +
Sbjct: 717 QRGTDPVATGNRKADEAAKQAAQSTR 742
>gi|66391343|ref|YP_238710.1| ORF090 [Staphylococcus phage Twort]
gi|62637273|gb|AAX92384.1| ORF090 [Staphylococcus phage Twort]
Length = 141
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 15/147 (10%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKII------SGGEKETTNNRMELMAAIKAL 60
+ YTDG+ G G +L K + + N E++A AL
Sbjct: 3 NTITIYTDGSSDYKKKQVGCGAVLLDDNKIIHTISNNVSNEKLAKFNNVSGEILAVCYAL 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ Y+ + + + E S ++
Sbjct: 63 EKAIQLGYKVAVVHIDYIGLINWYEGSWV---------ARNWLSQLYVERIREYSKYTQI 113
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+ +K H+ ++ N+ D +A+ +
Sbjct: 114 EFKKVKAHSNDKFNDLADELAKKSIGK 140
>gi|156539975|ref|XP_001599192.1| PREDICTED: similar to pol-like protein [Nasonia vitripennis]
Length = 1119
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 13/150 (8%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+H +TDG+ G + + + E A I +
Sbjct: 823 PVKPNLIHIFTDGSKLNENNASSVGFAIWSEDQDFNSAFKILDKASIYTAECKALINVID 882
Query: 62 AL--KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + C+ L+++DS + + A K
Sbjct: 883 KITVERECEFLVFSDSQ----------SALLALANNKNRCSPLIAELRQKLASRAEENVK 932
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L WI HAG + NE VD++A+NAA+ K
Sbjct: 933 IKLVWIPAHAGIKGNETVDKMAKNAAIDGK 962
>gi|257067022|ref|YP_003153278.1| ribonuclease H [Anaerococcus prevotii DSM 20548]
gi|256798902|gb|ACV29557.1| ribonuclease H [Anaerococcus prevotii DSM 20548]
Length = 194
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 17/145 (11%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMA------AIKALT 61
+ AY DG+ + G GV+ K E+ + + +
Sbjct: 59 TIIAYVDGSYNLKEKIYGAGVVYISKDGEEELYESYTDDFYKHRNVAGEVRASELAIKKA 118
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ K+++Y D + + I EA K+
Sbjct: 119 LEEKREKIIIYHDYQGISSWANDEW-----------KANNALTISYKNFVKEARKSLKIG 167
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
+KGH+ ++ N+ DR+A+ A+
Sbjct: 168 FVKVKGHSNDKYNDWADRLAKKGAL 192
>gi|189212601|gb|ACD84893.1| reverse transcriptase [Simian foamy virus]
Length = 239
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 26 YTDGSAIKSPDPTKSNNAGMGIVHAIYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKK 85
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 86 ALKIPGPVLIITDSFYVAESANKELPYWRSNGFVNNKKKPLKHISKWKSIAECLSLKPDI 145
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 146 VIQHEKGHQPTNTSIHTEGNALADKLATQG 175
>gi|154499184|ref|ZP_02037562.1| hypothetical protein BACCAP_03179 [Bacteroides capillosus ATCC
29799]
gi|150272024|gb|EDM99250.1| hypothetical protein BACCAP_03179 [Bacteroides capillosus ATCC
29799]
Length = 138
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK----IISGGEKETTNNR------MELMAAIKA 59
AY DG+ + G G +L G +K SG N+R M + I+A
Sbjct: 4 KAYVDGSYNAATRVYGAGAVLFLGGDDKPILLSQSGNHPAFVNSRNVAGEVMAAILVIEA 63
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ ++ +Y D + + + + + + S K
Sbjct: 64 CKRIPGLGELTIYYDYAGIECWANGNWRA-------------NTILSREYREAVRSLPFK 110
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ +K H+G+ NEK DR+A+ A
Sbjct: 111 ISFRKVKAHSGDLNNEKADRLAKEA 135
>gi|212275993|ref|NP_001130760.1| hypothetical protein LOC100191864 [Zea mays]
gi|194690044|gb|ACF79106.1| unknown [Zea mays]
Length = 292
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPC 67
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 153 ILHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHG 212
Query: 68 K--VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ ++ DS V + W+T ++ K E ++
Sbjct: 213 FKRIKVHGDSQLVCNQVNGV--------WQTKQPNMMELCTEARKLKENFHSFEII---- 260
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H + N + DR A
Sbjct: 261 --HVRREWNAEADRQANIGIT 279
>gi|334404|gb|AAA91914.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1046
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ N G G + +Y + M + A++ V +
Sbjct: 636 YVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALE-----DSGPNVNI 690
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + H++ L W+ G
Sbjct: 691 VTDSQYAMGILT---------AQPTQSDSPLIEQIIALMVQK----HQIYLQWVPADKGI 737
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 738 GGNEEIDKLVSQGMRKI 754
>gi|189677275|ref|YP_001956722.2| Pol precursor [African green monkey simian foamy virus]
gi|110282986|sp|P27401|POL_SFV3L RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Protease/Reverse transcriptase; AltName:
Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H;
Short=RNase H; Contains: RecName: Full=Integrase;
Short=IN; AltName: Full=p42In
Length = 1143
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+ E S + T E+ A
Sbjct: 597 YTDGSAIKHPNVNKSHNAGMGIAQVQFKPEFTVINTWSIPLGDHTAQLAEVAAVEFACKK 656
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + WQ NG+ + KK +K++ W + +
Sbjct: 657 ALKIDGPVLIVTDSFYVAESVNKELPYWQSNGFFNNKKKPLKHVSKWKSIADCIQLKPDI 716
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 717 IIIHEKGHQPTASTFHTEGNNLADKLATQG 746
>gi|74641|pir||GNLJLK pol polyprotein - simian foamy virus (type 3, strain LK3)
gi|334872|gb|AAA47796.1| pol polyprotein [Simian foamy virus 3]
Length = 1157
Score = 59.9 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+ E S + T E+ A
Sbjct: 611 YTDGSAIKHPNVNKSHNAGMGIAQVQFKPEFTVINTWSIPLGDHTAQLAEVAAVEFACKK 670
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + WQ NG+ + KK +K++ W + +
Sbjct: 671 ALKIDGPVLIVTDSFYVAESVNKELPYWQSNGFFNNKKKPLKHVSKWKSIADCIQLKPDI 730
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 731 IIIHEKGHQPTASTFHTEGNNLADKLATQG 760
>gi|324998690|ref|ZP_08119802.1| bifunctional RNase H/acid phosphatase [Pseudonocardia sp. P1]
Length = 392
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALT--A 62
++ DG GNPGP G+G ++ G + + G TNN E I LT
Sbjct: 11 KLVVEADGGSRGNPGPAGYGAVVLDAGGTQVLAEVYDGLGTATNNVAEYRGLIAGLTAAR 70
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+V DS V + S K + +D +A+ V
Sbjct: 71 ELGATEVDARLDSKLVVEQMSGRWKIKNTALQELADTA----------RDQAAGFDAVTF 120
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
WI +N + D +A A
Sbjct: 121 TWIP----RADNARADALANRAMD 140
>gi|134098170|ref|YP_001103831.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
gi|291007551|ref|ZP_06565524.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
gi|133910793|emb|CAM00906.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
Length = 366
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 43/145 (29%), Gaps = 19/145 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIK--ALTA 62
V DG GNPGP G G ++R S G TNN E I+ +
Sbjct: 4 RVVIEADGGSRGNPGPAGCGAVVRDATSGEVLAERSVGLGTATNNAAEYRGLIEGLSAAV 63
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + DS V + + K + +VDL
Sbjct: 64 ELGAEAIEVRMDSKLVIEQMAGRW----------KVKHANLQPLAEKARALLAGFGEVDL 113
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+ N DR+A A
Sbjct: 114 EWVP----RARNAHADRLANEAMDE 134
>gi|126304703|ref|XP_001371031.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 751
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 12 YTDGACSGN-PGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTDG+ N G G+ + E I +G + + + A+ L +
Sbjct: 595 YTDGSWLRNESGILVAGYAI---TTTAEVIEAGHLPSAISAQQAELEAVTRACELAKGKR 651
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKG 127
V +Y DS Y + WQ G+ TS +KN + +EA K + + I
Sbjct: 652 VNIYMDSRYAFGVAHDFGMFWQHRGYLTSSGTPIKNGAQVRRLLEALLLPKAIAIIKIPR 711
Query: 128 HA----GN-QENEKVDRIARNAAVSF 148
H+ + + N D+ A+ AA
Sbjct: 712 HSRENSPHAKGNALADKYAKEAARQL 737
>gi|322704266|gb|EFY95863.1| ribonuclease H1, putative [Metarhizium anisopliae ARSEF 23]
Length = 341
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 32/163 (19%)
Query: 13 TDGACSGNPG---PGGWGV-----------LLRYKGKEKIISGGEKETTNNRMELMAAIK 58
TDGAC N GW ++ ++ + + G E ++NR EL A I
Sbjct: 168 TDGACLNNGQANPKAGWAFFQGLNTEGQPLVVSHRLERQGPWGDEGIQSSNRAELRAVIA 227
Query: 59 ALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS----------DKKTVKN 104
AL + V++ TDS YV +G ++W K W QN W+T K +
Sbjct: 228 ALRFRHWPGEGFSTVVIATDSEYVVEGSTRWAKTWVQNNWRTKGIKGNGGANVKNKDLWE 287
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L + + I N D+ A+NAA +
Sbjct: 288 MLLGECEKAHRRGQAIQFWKIP----RDWNALADQGAKNAAAA 326
>gi|29135091|ref|NP_803721.1| ORF155 [Pseudomonas phage phiKZ]
gi|18996620|gb|AAL83056.1|AF399011_155 PHIKZ155 [Pseudomonas phage phiKZ]
Length = 482
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 41/174 (23%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-------------------------- 43
YTDG+ G GWG+ + S
Sbjct: 6 VLYTDGSFR--QGKAGWGIHGYTYENVAMKSKAATKQQPTAKGYLDVGADETCTVLNYID 63
Query: 44 ------KETTNNRMELMAAIKALTALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
TNN EL AAI+A ++ + DS YV KG + ++ KW ++ W
Sbjct: 64 AFGSVTNNPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNWI 123
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK-----VDLYWIKGHAGNQENEKVDRIARNA 144
SD V N DLW + VE A+ + + + W++GH G+ NEK D A+
Sbjct: 124 KSDGTPVANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLG 177
>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 765
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 8/143 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAIKALT--ALK 64
+TD A N G +++ + G EK T EL+A L
Sbjct: 454 VFTD-AAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRS 512
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLY 123
+ + + + S + + ++ E + + L
Sbjct: 513 HSSEGTPTPHQRHTYTILSDSRTALRAIANSSKQVGGQIVQNILHTTKELRSIGVDLCLQ 572
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W+ GH+G + NE D++A+ +
Sbjct: 573 WVPGHSGIKGNEMADQLAKQSIN 595
>gi|9630313|ref|NP_056790.1| Pol polyprotein [Gibbon ape leukemia virus]
gi|130602|sp|P21414|POL_GALV RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
gi|332612|gb|AAA46810.1| pol polyprotein [Gibbon ape leukemia virus]
Length = 1165
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 7/144 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ G G + K + + E T+ + + A+ L + +
Sbjct: 638 YTDGSSFITEGKRRAGAPIVDG-KRTVWASSLPEGTSAQKAELVALTQALRLAEGKNINI 696
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA- 129
YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 697 YTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPRRVAIIHCPGHQR 756
Query: 130 -GNQ---ENEKVDRIARNAAVSFK 149
N N + D A+ AA+S +
Sbjct: 757 GSNPVATGNRRADEAAKQAALSTR 780
>gi|326494200|dbj|BAJ90369.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKY-- 65
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 140 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 199
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ +Y DS V + + ++ K E +V
Sbjct: 200 FKRIKVYGDSQLVCYQVKGTWQA--------KKENMMELCKEVRKLQENFISFEVH---- 247
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H + N + DR A A
Sbjct: 248 --HVRREWNSEADRQANIAIT 266
>gi|238917359|ref|YP_002930876.1| ribonuclease HI [Eubacterium eligens ATCC 27750]
gi|238872719|gb|ACR72429.1| ribonuclease HI [Eubacterium eligens ATCC 27750]
Length = 208
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 3 SKHLREV-----HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMA 55
S ++ +V +A+ DG+ + G G+G L + G +SG +KE + R
Sbjct: 62 SSNMEDVMPDNDYAFVDGSFNIVTGVYGYGGFLMHDGVRYELSGNGSDKEMASMRNVAGE 121
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+ +++A+K ++ L S + + + K + I +
Sbjct: 122 ILGSMSAVKKAIELGLKDISIFYDYAGIKAWAVGEWKRNKKGTIEYYNYITSVRDSI--- 178
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++GH+G + NE+ DR+A+ A
Sbjct: 179 ---NIRFVKVRGHSGVEGNEEADRLAKRA 204
>gi|194699332|gb|ACF83750.1| unknown [Zea mays]
Length = 292
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPC 67
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 153 ILHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHG 212
Query: 68 K--VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ ++ DS V + W+T ++ K E ++
Sbjct: 213 FKRIKVHGDSQLVCNQVNGV--------WQTKQPNMMELCTEARKLKENFHSFEII---- 260
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H + N + DR A
Sbjct: 261 --HVRREWNAEADRQANIGIT 279
>gi|302826668|ref|XP_002994755.1| hypothetical protein SELMODRAFT_432653 [Selaginella moellendorffii]
gi|300136963|gb|EFJ04180.1| hypothetical protein SELMODRAFT_432653 [Selaginella moellendorffii]
Length = 688
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 17/150 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLL-----------RYKGKEKIISGGEKETTNNRMELMA 55
R + A+TDG+ GG+GV + R S E L
Sbjct: 18 RGLQAFTDGSFKR-GVFGGYGVFIPRVSMRLACGRRANDDLHTSSTITFELLGLLRALEI 76
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
++ + +YTDS +++ G ++ + ++ +
Sbjct: 77 CLEMEWRWGLWEPIFVYTDSYDSLTLLEMYVQDPIALGCH-----PNADVIQTIVWLAGT 131
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ V +KGH N+ D +A+ A
Sbjct: 132 SLVPVHFCKVKGHYDIAGNQVADELAKIGA 161
>gi|124008372|ref|ZP_01693067.1| RNase H [Microscilla marina ATCC 23134]
gi|123986161|gb|EAY25997.1| RNase H [Microscilla marina ATCC 23134]
Length = 154
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTA---- 62
+ YTDGAC G W L+ E+ G TT+ RMEL AAI+AL
Sbjct: 3 LTIYTDGACHPPSQTGAWAALIFAANNEEDTLLQGIVTHTTHQRMELTAAIEALYYAEKK 62
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
V LYTDS YV ++ K Q + T +N DL F + +V+L
Sbjct: 63 AMPLSTVALYTDSQYVADLPTRRKKIVQ-GNFITKKGNLRQNTDLLQVFFGLLDRVEVEL 121
Query: 123 YWIKGH--AGN--QENEKVDRIARN 143
Y +K H G+ N +VD+ R
Sbjct: 122 YKVKAHQKQGDLPNHNRRVDKWVRK 146
>gi|259503104|ref|ZP_05746006.1| ribonuclease H1 [Lactobacillus antri DSM 16041]
gi|259168970|gb|EEW53465.1| ribonuclease H1 [Lactobacillus antri DSM 16041]
Length = 240
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 9 VHAYTDGACSGNPG----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG + W L+ +G++ + GE TNN+MEL A +
Sbjct: 83 ILLYTDGGSRNHGNRRGQHVKSNDKAAWAYLIERRGQQYTGTDGEFGATNNKMELTALLT 142
Query: 59 ALT----ALKYPCKVLLYTDSSYVHKGFSQWI-KKWQQNGWKTSDKKTVKNIDLWMKFVE 113
AL + DS YV ++ WQ+ GWKT+ K V N +LW + ++
Sbjct: 143 ALQTISAHGWQDEAISATLDSHYVLDPITKGWLYGWQRRGWKTAAGKPVANKELWQELLK 202
Query: 114 ASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
Q + W KGHA N N VD + +
Sbjct: 203 ILPQFPHLHFAWTKGHAANLGNNTVDELLNTTMDTM 238
>gi|300811118|gb|ADK35846.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRANEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|326490670|dbj|BAJ90002.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKY-- 65
+ DGA GNPG G G +L + I E TNN E I L
Sbjct: 184 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 243
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ +Y DS V + + ++ K E +V
Sbjct: 244 FKRIKVYGDSQLVCYQVKGTWQA--------KKENMMELCKEVRKLQENFISFEVH---- 291
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H + N + DR A A
Sbjct: 292 --HVRREWNSEADRQANIAIT 310
>gi|315272224|gb|ADU02678.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTKETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|205373739|ref|ZP_03226542.1| ribonuclease H [Bacillus coahuilensis m4-4]
Length = 134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 17/145 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
+ Y DGA +G+PG G GV +R + + S N++ E A ++A+ +
Sbjct: 2 IEVYIDGASAGDPGHSGAGVHIRNGQQSESYSIPLGIMNNHQAEFFALLQAVEICEQKGY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS V + + K S + W+
Sbjct: 62 DMVSFRTDSQAVARAIEKEFV-----------KNPTYREIFLSIQQVLSRNPLFFVKWVP 110
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
+EN D ++R A K +
Sbjct: 111 S----KENLVADDLSRKAIRLSKAE 131
>gi|42560875|ref|NP_975326.1| ribonuclease H-related protein [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|42492372|emb|CAE76968.1| ribonuclease H-related protein [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
Length = 205
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 18/146 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN--RMELMAAIKALTALKYP- 66
AYTDG+ + +GV++ +K +E +S + R + + +
Sbjct: 66 VAYTDGSYNTLDNTFSYGVVIFWKNREFHLSQRFDNQNISSLRNVAGEVLAVKQTIMFCV 125
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KVL+ D V K + +W+ N T + K N + Q +V+
Sbjct: 126 ANKIKKVLICHDYQGVSKWA---LDQWKTNLDFTKEYKEFFN--------KNKDQVEVEF 174
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIK H N+ N+ D++A+NA++ F
Sbjct: 175 KWIKSHTNNKYNDLADKLAKNASLEF 200
>gi|213021402|ref|ZP_03335849.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 65
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
TS KK VK +DLW + A QH++ W+KGHAG+ ENE+ D +AR AA++
Sbjct: 2 TSGKKPVKIVDLWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMN 53
>gi|134080096|emb|CAK41142.1| unnamed protein product [Aspergillus niger]
Length = 366
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGVLLRY--------------KGKEKIISGGEK 44
+ R++ YT G C N GG GV+ R + K SG +
Sbjct: 185 RRNNPRQLLLYTKGTCLNNGEAQPRGGCGVVYRSAVDLPEGKMNHFKIPLEIKGPSGRKN 244
Query: 45 ETTNNRMELMAAIK----ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK 100
T++R EL A I + K+++ TDS YV +G + W++ W Q GWKT
Sbjct: 245 PHTSDRAELRAVIAACRFRCWTGEGFNKLVIATDSEYVVEGATCWVQGWIQRGWKTRTGN 304
Query: 101 TVKNIDLWMK---FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V N DLW +E H +++ + + N R+A AA+
Sbjct: 305 PVNNRDLWECLLGELERWYDHGMEIQFW--QIPRECNTDAARLAEQAALE 352
>gi|315272266|gb|ADU02714.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|315272245|gb|ADU02696.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 608 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPATHQTAER----IAIQMALEDTEETL 661
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 662 INIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 709
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 710 KGIYGNQLADE 720
>gi|315272196|gb|ADU02654.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|315272189|gb|ADU02648.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 608 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 661
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 662 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 709
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 710 KGIYGNQLADE 720
>gi|315272182|gb|ADU02642.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 608 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 661
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 662 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 709
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 710 KGIYGNQLADE 720
>gi|315272175|gb|ADU02636.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 608 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 661
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 662 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 709
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 710 KGIYGNQLADE 720
>gi|242798560|ref|XP_002483195.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218716540|gb|EED15961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 574
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 21 PGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
G G GV L+ ++ E + + + + A++ + + ++ D
Sbjct: 376 GGRAGAGVALQAVPEGPWEHVEVPMGHRYEVFDAELVGVAIALEWALGRQLLGPIWVFLD 435
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQEN 134
+ K + A V + W+ GH+G + N
Sbjct: 436 AQNAINRLKSTRPG---------PGKGLVLRAHRAAKKLAMRGQLVTIQWVPGHSGIEGN 486
Query: 135 EKVDRIARNAAVS 147
E+ D+ A+ AA
Sbjct: 487 ERADQAAKRAASK 499
>gi|13383731|gb|AAK21106.1|AF327877_2 pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|311741456|ref|ZP_07715280.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303626|gb|EFQ79705.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 376
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ V Y DG GNPG G G ++ ++I+ ++TNN E ++ L
Sbjct: 1 MK-VIIYADGGSRGNPGVAGSGTVIYDGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLE 59
Query: 62 ALKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A +V + DS V + + K +
Sbjct: 60 AATEMGATEVEFHMDSKLVVEQINGRW----------KIKHPDMQKLALRAREYINGFSS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
L W+ +N+ D ++ +A +
Sbjct: 110 FSLDWVP----RAKNKVADALSNDAMDAA 134
>gi|315272238|gb|ADU02690.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQRRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|154272780|ref|XP_001537242.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415754|gb|EDN11098.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 306
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 31/148 (20%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ AA+
Sbjct: 22 RSQPSTDLYVFSDGSEQSLDNSRQVGYGFIVYQGNKQL-------------ASFSAALSP 68
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++ D+ + + I + + +S+ + + E QH
Sbjct: 69 MSH---------VFDAEALCLDNTSVIWGIRGSAAASSN-------WAYNRCHELLRQHN 112
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W GH G + NE+ DR+A+ A S
Sbjct: 113 VGLKWAPGHMGIEGNEEADRLAKRAVSS 140
>gi|255324866|ref|ZP_05365975.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
gi|255298043|gb|EET77351.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
Length = 376
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ V Y DG GNPG G G ++ ++I+ ++TNN E ++ L
Sbjct: 1 MK-VIIYADGGSRGNPGVAGSGTVIYDGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLE 59
Query: 62 ALKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A +V + DS V + + K +
Sbjct: 60 AATEMGATEVEFHMDSKLVVEQINGRW----------KIKHPDMQKLALRAREYINGFSS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
L W+ +N+ D ++ +A +
Sbjct: 110 FSLDWVP----RAKNKVADALSNDAMDAA 134
>gi|242821851|ref|XP_002487765.1| hypothetical protein TSTA_001790 [Talaromyces stipitatus ATCC
10500]
gi|218712686|gb|EED12111.1| hypothetical protein TSTA_001790 [Talaromyces stipitatus ATCC
10500]
Length = 395
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALT 61
+ +TD + N G V K + E L +++
Sbjct: 69 TIQFFTDWSGFDNG--IGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQP 126
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
P + +YTD+ + Q + + + + ++ +V
Sbjct: 127 CDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGLLRDNRSRWRVR 179
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+ GH G NEK D++A+ AAV +
Sbjct: 180 LQWVPGHEGVPGNEKADQLAKLAAVEATRR 209
>gi|160947259|ref|ZP_02094426.1| hypothetical protein PEPMIC_01192 [Parvimonas micra ATCC 33270]
gi|158446393|gb|EDP23388.1| hypothetical protein PEPMIC_01192 [Parvimonas micra ATCC 33270]
Length = 206
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 18/144 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMAAIKALT--- 61
E+ AY DG+ + G+GV+L K + G + E +R ++
Sbjct: 68 DEIVAYVDGSYKKDTLEYGYGVVLILKDDIIELFGKGEDPEVAKSRNVTGELFGSIRAIG 127
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + + I K E + +
Sbjct: 128 EAIRLKKKKITVFYDYQGISSWANGEW-----------KCNLPLTIGYRDKIKEFRKEIE 176
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
+ +K H+ ++ N+ D +A+
Sbjct: 177 ILFVKVKAHSNDKYNDLADHLAKK 200
>gi|158931143|sp|P27980|POL_SIVVG RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1465
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ N G G + +Y + M + A++ V +
Sbjct: 1055 YVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALE-----DSGPNVNI 1109
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + H++ L W+ G
Sbjct: 1110 VTDSQYAMGILT---------AQPTQSDSPLIEQIIALMVQK----HQIYLQWVPADKGI 1156
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 1157 GGNEEIDKLVSQGMRKI 1173
>gi|226224483|ref|YP_002758590.1| RNase HI [Listeria monocytogenes Clip81459]
gi|254852783|ref|ZP_05242131.1| ribonuclease HI [Listeria monocytogenes FSL R2-503]
gi|300763810|ref|ZP_07073807.1| RNase H [Listeria monocytogenes FSL N1-017]
gi|225876945|emb|CAS05654.1| Putative RNase HI [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258606110|gb|EEW18718.1| ribonuclease HI [Listeria monocytogenes FSL R2-503]
gi|300515546|gb|EFK42596.1| RNase H [Listeria monocytogenes FSL N1-017]
Length = 133
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADTFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|300811139|gb|ADK35864.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEGTL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|255067226|ref|ZP_05319081.1| ribonuclease HI [Neisseria sicca ATCC 29256]
gi|255048594|gb|EET44058.1| ribonuclease HI [Neisseria sicca ATCC 29256]
Length = 61
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 89 WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ + +K VKN DLW + QH+V W+KGHAG+ ENEK D +A A F
Sbjct: 1 MEKKRLENHRQKPVKNDDLWKELDSLVQQHEVRWTWVKGHAGHPENEKADELANRGAAKF 60
>gi|242797738|ref|XP_002483023.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716368|gb|EED15789.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 384
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 5/146 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ Y+DG+ + GG V + + S A +A
Sbjct: 86 NDIIIYSDGSKLDSGQTGGGFVGFQANSQILRHSFPLGPNKEVFDAEAEAARAGLEAAAA 145
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD-----KKTVKNIDLWMKFVEASAQHKVD 121
+ ++ + + +S +T+ + + + + + +
Sbjct: 146 HPTAQRASNLWICLDNLEVAIHLLSSTTGSSQAVFEEFRTLADTWPTRRRLPQTERGSIR 205
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA NE D+ A+ A
Sbjct: 206 IRWVPGHADIPGNEAADQAAKEGANK 231
>gi|300811125|gb|ADK35852.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSSGKTKQKRLGPVTHQTTER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|300811104|gb|ADK35834.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPGSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1838
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E T EL+ + L +
Sbjct: 1529 VYTDGS--GIHGKVGAAALAPPIHTQELAYLGKETTATVYAAELLGILMGL-------NL 1579
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + S +V+ YWI H
Sbjct: 1580 ILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQ 1639
Query: 130 GNQENEKVDRIARNA 144
G + NE D++A+ A
Sbjct: 1640 GIEGNELADKLAKEA 1654
>gi|301321393|gb|ADK70036.1| ribonuclease HI [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 205
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 18/146 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN--RMELMAAIKALTALKYP- 66
AYTDG+ + +GV++ +K +E +S + R + + +
Sbjct: 66 IAYTDGSYNTLDNTFSYGVVIFWKNREFHLSQRFDNQNISSLRNVAGEVLAVKQTIMFCV 125
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KVL+ D V K + +W+ N T + K N + Q +V+
Sbjct: 126 ANKIKKVLICHDYQGVSKWA---LDQWKTNLDFTKEYKEFFN--------KNKDQVEVEF 174
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIK H N+ N+ D++A+NA++ F
Sbjct: 175 KWIKSHTNNKYNDLADKLAKNASLEF 200
>gi|312126659|ref|YP_003991533.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
gi|311776678|gb|ADQ06164.1| ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
Length = 199
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 12 YTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
Y DGA GNPGP G G+++ S TNN E +A I+ L
Sbjct: 5 YFDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIK 64
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ + DS V KV WI
Sbjct: 65 ELEILGDSQLVINQVFGSWNI----------NMPHLYALYEQATELLEKFDKVKAKWIP- 113
Query: 128 HAGNQENEKVDRIARNAAV 146
++N+ D ++ A
Sbjct: 114 ---REKNQLADSLSNKAIT 129
>gi|254931950|ref|ZP_05265309.1| ribonuclease HI [Listeria monocytogenes HPB2262]
gi|254992230|ref|ZP_05274420.1| RNase HI [Listeria monocytogenes FSL J2-064]
gi|293583502|gb|EFF95534.1| ribonuclease HI [Listeria monocytogenes HPB2262]
gi|328466230|gb|EGF37387.1| ribonuclease HI [Listeria monocytogenes 1816]
gi|332312321|gb|EGJ25416.1| RNase H [Listeria monocytogenes str. Scott A]
Length = 133
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|315272203|gb|ADU02660.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T RM AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAERM----AIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|194033119|ref|YP_002000606.1| Hypothetical mature RT protein [Gibbon ape leukemia virus]
Length = 658
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ G G + K + + E T+ + + A+ L + +
Sbjct: 518 YTDGSSFITEGKRRAGAPIVDG-KRTVWASSLPEGTSAQKAELVALTQALRLAEGKNINI 576
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA- 129
YTDS Y ++Q G TS K +KN + + +EA +V + GH
Sbjct: 577 YTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPRRVAIIHCPGHQR 636
Query: 130 -GNQ---ENEKVDRIARNAAVS 147
N N + D A+ AA+S
Sbjct: 637 GSNPVATGNRRADEAAKQAALS 658
>gi|322702767|gb|EFY94393.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 553
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 10/140 (7%)
Query: 6 LREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
E+ Y+DG+ G G+G + + SG E A++ L A
Sbjct: 330 PDELVVYSDGSQLP-GGATGYGYAVHQNSVTICEGSGRLGPAEVFDAEAAGALEGLRAAV 388
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
D+S T+ + + + A + + W
Sbjct: 389 KI------PDASDNPIVVCLDNLAAATCLRGTALDSSQSAFLKFQEIAAAHG--SIHVRW 440
Query: 125 IKGHAGNQENEKVDRIARNA 144
I GH NE+ D +A+
Sbjct: 441 IPGHTDIPGNEQADSLAKAG 460
>gi|256384009|gb|ACU78579.1| ribonuclease HI [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384841|gb|ACU79410.1| ribonuclease HI [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455584|gb|ADH21819.1| ribonuclease HI [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 205
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN--RMELMAAIKALTALKYP- 66
AYTDG+ + +GV++ +K +E +S + R + + +
Sbjct: 66 IAYTDGSYNTLDNTFSYGVVVFWKNREFHLSQRFDNQNISSLRNVAGEVLAVKQTIMFCV 125
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KVL+ D V K + +W+ N T + K N +V+
Sbjct: 126 ANKIKKVLICHDYQGVSKWA---LDQWKANLDFTKEYKEFFNKYKNQV--------EVEF 174
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIK H N+ N+ D++A+NA++ F
Sbjct: 175 KWIKSHTNNKYNDLADKLAKNASLEF 200
>gi|155371303|ref|YP_001426837.1| hypothetical protein ATCV1_Z356L [Acanthocystis turfacea Chlorella
virus 1]
gi|155124623|gb|ABT16490.1| hypothetical protein ATCV1_Z356L [Acanthocystis turfacea Chlorella
virus 1]
Length = 166
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+HAYTDG+ GG GV + + + + NR+EL A +T L+
Sbjct: 22 IHAYTDGSLRR--CKGGIGV---HAPRIDYSARVSERKDINRIELGAIFAGMTLLESDAD 76
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
VL +DS + + + + ++ V + +KGH
Sbjct: 77 VLFLSDSQNALNSITSFRRS------------KYDKLAKFVLQYAEERVGNVYVAKVKGH 124
Query: 129 AGNQENEKVDRIA 141
+G NE D++A
Sbjct: 125 SGVPGNEAADKLA 137
>gi|302524447|ref|ZP_07276789.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
gi|302433342|gb|EFL05158.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
Length = 380
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 11/134 (8%)
Query: 14 DGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
DG GNPGP G+G +++ E + E + +
Sbjct: 10 DGGSRGNPGPAGYGAVVKDASTGEVLAERHEYLGVATNNVAEYSGLVAGLAAAAELGVSI 69
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
D K + + + + ++ +V WI
Sbjct: 70 VDVRMDSKLVVEQMSGRWKIKHAALQPLAAQAREIAA------GFERVSYTWIP----RA 119
Query: 133 ENEKVDRIARNAAV 146
EN DR+A A
Sbjct: 120 ENSHADRLANVAMD 133
>gi|114842156|dbj|BAF32564.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1062
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ N G G + +Y + E T N+ + AIK P V +
Sbjct: 652 YVDGACNRNSKEGKAGYISQYGKQRVET----LENTTNQQAELTAIKMALEDSGP-NVNI 706
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + ++ L W+ H G
Sbjct: 707 VTDSQYAMGILT---------AQPTQSDSPLVEQIIALMIQKQ----QIYLQWVPAHKGI 753
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 754 GGNEEIDKLVSKGIR 768
>gi|302342840|ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
gi|301639453|gb|ADK84775.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
Length = 202
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
Y DG GNPGP G G ++ + +S + TNN E A + L A
Sbjct: 72 TLYADGGARGNPGPAGAGAVIYDQSGAQIAALSRYLGQATNNVAEYQALLMGLEAALELG 131
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + DS + K + + K +
Sbjct: 132 VGQIDVRLDSELLVKQLGGQYQVKAPHLKPLFQKAKALLQQFTGAHIV------------ 179
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H ++N D +A A
Sbjct: 180 --HVRREQNGVADGLANQAMD 198
>gi|319935780|ref|ZP_08010209.1| ribonuclease HI [Coprobacillus sp. 29_1]
gi|319809215|gb|EFW05664.1| ribonuclease HI [Coprobacillus sp. 29_1]
Length = 195
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 3/136 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G+G +L Y G+ + + A + +
Sbjct: 59 LIAYVDGSYNVKTHEYGYGCVLLYGQNVIEQFNGKGHSEDYVTMRNVAGEII---GSEMA 115
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ Y + ++ + E+ + + H
Sbjct: 116 IRYAIKHGYQFICIYYDYEGIEKWANGLWKANKIGTQAYQRFIEESRKSIDISFVKVLAH 175
Query: 129 AGNQENEKVDRIARNA 144
+G+ N+ D +A+ A
Sbjct: 176 SGDVYNDVADALAKKA 191
>gi|322695892|gb|EFY87693.1| ribonuclease H1, putative [Metarhizium acridum CQMa 102]
Length = 325
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGV-----------LLRYKGKEKIISGGEKETT 47
+ K + + TDGAC N GW ++ ++ +++ G + +
Sbjct: 143 NDKSM--LLIMTDGACLNNGQANPKAGWAFFQGLSIQGQPLVVSHRLEKQGPWGDDGIQS 200
Query: 48 NNRMELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKT------- 96
+NR EL A I AL + V++ TDS YV +G ++W K W +N W+T
Sbjct: 201 SNRAELRAVIAALRFRHWPGEGFSTVIIATDSEYVVEGSTRWAKTWVRNNWRTIGKKGNG 260
Query: 97 -SDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ K ++ + E + + + + + K N D+ A+NAA +
Sbjct: 261 GANVKNKDLWEMLLGECEKAHRRGLAIQFWK--IPRDWNALADQGAKNAAAA 310
>gi|254826078|ref|ZP_05231079.1| ribonuclease HI [Listeria monocytogenes FSL J1-194]
gi|255521586|ref|ZP_05388823.1| RNase HI [Listeria monocytogenes FSL J1-175]
gi|293595319|gb|EFG03080.1| ribonuclease HI [Listeria monocytogenes FSL J1-194]
Length = 133
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKSHLEAILEMADSFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|157652694|gb|ABV59399.1| pol [Spider monkey foamy virus]
Length = 1148
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPG-----PGGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+++ E + S + T E+ A
Sbjct: 593 YTDGSAIKSPKTEQTHSAGMGIVMVVYTPEPNITQQWSIPLGDHTAQYAEISAVEFACKK 652
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-VKNIDLWMKFVEASAQHKV 120
A VL+ TDS YV + ++ + W+ NG+ + KK + +
Sbjct: 653 ASLLQGPVLIVTDSDYVARSANKELPFWRSNGFLNNKKKPLKHISKWKNISDSLLLKRNI 712
Query: 121 DLYWIKGHAGNQ------ENEKVDRIARNA 144
+ GH ++ N D++A
Sbjct: 713 TIVHEPGHQPSKTSIHTLGNSLADKLAVQG 742
>gi|331222567|ref|XP_003323957.1| hypothetical protein PGTG_05859 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302947|gb|EFP79538.1| hypothetical protein PGTG_05859 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 2/139 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + +TDG+ + G G V + + + E L
Sbjct: 38 RSLVIFTDGSWIPDKGAGAAAVTHPSGMSL--AATVKPADFISNFETELIGIGLAITIAQ 95
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + +++ F V LYW
Sbjct: 96 NALEADHSQEISAVAIFGDNQGALMLSSDPLSQSPGQHLYTDNFFRMKLLGCPVKLYWCP 155
Query: 127 GHAGNQENEKVDRIARNAA 145
H G NEK D +A+ AA
Sbjct: 156 SHEGIIANEKADTLAKEAA 174
>gi|163791082|ref|ZP_02185502.1| EbsB protein [Carnobacterium sp. AT7]
gi|159873638|gb|EDP67722.1| EbsB protein [Carnobacterium sp. AT7]
Length = 135
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 12/144 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTD + NPGP G G+++ E++ EKE +N+ E A +K L L
Sbjct: 2 IKMYTDASTKNNPGPSGVGIVISTEDRHEQLSIALEKEMSNHEAEFEALLKGLHYLIE-- 59
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
TD + + S+ + + + D V + + + WI
Sbjct: 60 --HNLTDETLMMYTDSKLVASAVKKNYVKKDLFNVHLTTIQERLTHFPLFF---IEWIP- 113
Query: 128 HAGNQENEKVDRIARNAAVSFKNK 151
+N+ D +A+ A +K
Sbjct: 114 ---ESKNKGADNLAKQALQKIISK 134
>gi|242814632|ref|XP_002486407.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714746|gb|EED14169.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 454
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ ++
Sbjct: 127 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQF 185
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ ++ D+ Q + + K V + W+
Sbjct: 186 LGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 236
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 237 PGHSGIEGNEQADQAAKRAASK 258
>gi|46908112|ref|YP_014501.1| ribonuclease HI [Listeria monocytogenes serotype 4b str. F2365]
gi|46881382|gb|AAT04678.1| ribonuclease HI [Listeria monocytogenes serotype 4b str. F2365]
Length = 133
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLTVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|326480361|gb|EGE04371.1| hypothetical protein TEQG_08666 [Trichophyton equinum CBS 127.97]
Length = 220
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
+LR + DGACS N GV + K + N+ +AA I L
Sbjct: 63 NLRSIIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGL 122
Query: 61 TALKYPCK----------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
A + V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N L+ +
Sbjct: 123 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKE 182
Query: 111 FVEASAQHKVDLYWIK---GHAGNQENEKVDRIARNA 144
+ ++ +K H + N + D++AR+A
Sbjct: 183 L--SWRVRELAESHVKVYFWHVRREHNREADQLARDA 217
>gi|212541120|ref|XP_002150715.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
gi|210068014|gb|EEA22106.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
Length = 992
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 16/143 (11%)
Query: 11 AYTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++DG+ N G G GV L+ ++ E + G + M + +A++
Sbjct: 693 LWSDGS-RQNNGRTGAGVALQIVPEAPWEHLELPMGTGFEVFDVELMGVASALEWALERH 751
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + + D+ K +++ + V + W
Sbjct: 752 LPGPIHVLLDAQNAIKRLQSTEPG---------AGQSLALRARMAASRLRLSGRPVTIQW 802
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
+ GH G + NE+ D+ A+ AA
Sbjct: 803 VPGHNGVEGNEQADQAAKRAASK 825
>gi|322703804|gb|EFY95407.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 1861
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ Y+DG+ S N G G+G + + +G E A++ L A
Sbjct: 1670 TLIVYSDGSLSPN-GAAGYGYAVHQSGRSICQGAGRLGPAEVFDAEAKGALEGLKAALRL 1728
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V + + A ++ WI
Sbjct: 1729 --------PQSVTQKIFVCLDNIAAARCLRGKPSESSQRVFLTFQALAKTHRMTEVRWIP 1780
Query: 127 GHAGNQENEKVDRIARNA 144
GH NE+ D +A+
Sbjct: 1781 GHTKIPGNEQADVLAKAG 1798
>gi|326475291|gb|EGD99300.1| hypothetical protein TESG_06569 [Trichophyton tonsurans CBS 112818]
Length = 220
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
+LR + DGACS N GV + K + N+ +AA I L
Sbjct: 63 NLRSIIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGL 122
Query: 61 TALKYPCK----------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
A + V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N L+ +
Sbjct: 123 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKE 182
Query: 111 FVEASAQHKVDLYWIK---GHAGNQENEKVDRIARNA 144
+ + ++ +K H + N + D++AR+A
Sbjct: 183 L--SWSVRELAESHVKVYFWHVRREHNREADQLARDA 217
>gi|242765587|ref|XP_002341005.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724201|gb|EED23618.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1091
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 764 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 822
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D+ ++ + + V +
Sbjct: 823 LGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 871
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 872 WVPGHSGIEGNEQADQAAKRAASK 895
>gi|242794494|ref|XP_002482386.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
gi|218718974|gb|EED18394.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
Length = 1125
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 798 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 856
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D+ ++ + + V +
Sbjct: 857 LGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 905
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 906 WVPGHSGIEGNEQADQAAKRAASK 929
>gi|242825350|ref|XP_002488422.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712240|gb|EED11666.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 1671 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1729
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D+ ++ + + V +
Sbjct: 1730 LGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 1778
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 1779 WVPGHSGIEGNEQADQAAKRAASK 1802
>gi|542601|pir||S37765 hypothetical protein - fruit fly (Drosophila miranda) transposon
TRIM
Length = 426
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 19/147 (12%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ VH YTDG+ G G G + + + + + E+ A +A++
Sbjct: 139 EPGPANAVHFYTDGSKL--DGRVG-GGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAIS 195
Query: 62 A----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
V +++DS K E + Q
Sbjct: 196 IVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSL------------HEIAEQ 243
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH + N+ D +AR
Sbjct: 244 LDLFLIWVPGHRDIEGNDAADELARQG 270
>gi|154249252|ref|YP_001410077.1| RNAse H family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153188|gb|ABS60420.1| RNAse H family protein [Fervidobacterium nodosum Rt17-B1]
Length = 152
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 12/146 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKI---ISGGEKETTNNRMELMAAIKALTALKYP 66
Y DG+ + + G+ + + K + + + EL+ IKAL +
Sbjct: 2 KIYVDGSYNESLNLAGYAFAVVENEEIKFAQKEAMILRNGNSVTAELIGVIKALEYCQNQ 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ Y + K K E KV +K
Sbjct: 62 GIQEVTIIHDYNEIP---------MFAFSYRKTKNPSINSYVRKLREMRETIKVSFLKVK 112
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
H ++ N VD ++R + F ++
Sbjct: 113 AHTDDRFNNYVDELSRKSIEEFLERL 138
>gi|1335691|emb|CAA41925.1| unnamed protein product [Drosophila miranda]
Length = 521
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 19/147 (12%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ VH YTDG+ G G G + + + + + E+ A +A++
Sbjct: 234 EPGPANAVHFYTDGSKL--DGRVG-GGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAIS 290
Query: 62 A----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
V +++DS K E + Q
Sbjct: 291 IVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSL------------HEIAEQ 338
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH + N+ D +AR
Sbjct: 339 LDLFLIWVPGHRDIEGNDAADELARQG 365
>gi|253580335|ref|ZP_04857601.1| RNAse H family protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848428|gb|EES76392.1| RNAse H family protein [Ruminococcus sp. 5_1_39BFAA]
Length = 218
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++ V AY DG+ + G +G ++ ++I G + A + L
Sbjct: 72 PENM--VIAYVDGSFEKSIGRYAFGCVILTPDGQEIRKSGSGSDSAGVAIRNVAGEML-- 127
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
V ++ Y + ++ KT EA + K+
Sbjct: 128 -GSMTAVNWAIENKYPAVEIRYDYEGVEKWVTGVWRAKTPLTSKYAAHMQEAGKKVKISF 186
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
I H GN NE+ D++A++A + ++
Sbjct: 187 CKIAAHTGNHYNEEADQLAKSALLKTDEEV 216
>gi|16803919|ref|NP_465404.1| hypothetical protein lmo1880 [Listeria monocytogenes EGD-e]
gi|224500232|ref|ZP_03668581.1| hypothetical protein LmonF1_11344 [Listeria monocytogenes Finland
1988]
gi|224501321|ref|ZP_03669628.1| hypothetical protein LmonFR_02160 [Listeria monocytogenes FSL
R2-561]
gi|254827236|ref|ZP_05231923.1| ribonuclease HI [Listeria monocytogenes FSL N3-165]
gi|254831520|ref|ZP_05236175.1| hypothetical protein Lmon1_09203 [Listeria monocytogenes 10403S]
gi|284802325|ref|YP_003414190.1| hypothetical protein LM5578_2081 [Listeria monocytogenes 08-5578]
gi|284995467|ref|YP_003417235.1| hypothetical protein LM5923_2032 [Listeria monocytogenes 08-5923]
gi|16411333|emb|CAC99958.1| lmo1880 [Listeria monocytogenes EGD-e]
gi|258599619|gb|EEW12944.1| ribonuclease HI [Listeria monocytogenes FSL N3-165]
gi|284057887|gb|ADB68828.1| hypothetical protein LM5578_2081 [Listeria monocytogenes 08-5578]
gi|284060934|gb|ADB71873.1| hypothetical protein LM5923_2032 [Listeria monocytogenes 08-5923]
Length = 133
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + + TN+ E +A L K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLDAILEMADSLELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|217963968|ref|YP_002349646.1| ribonuclease HI [Listeria monocytogenes HCC23]
gi|217333238|gb|ACK39032.1| ribonuclease HI [Listeria monocytogenes HCC23]
gi|307571462|emb|CAR84641.1| rnhA [Listeria monocytogenes L99]
Length = 133
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D +AR A K
Sbjct: 109 --NVSQNKQADHLARQAIKKQK 128
>gi|251797095|ref|YP_003011826.1| ribonuclease H [Paenibacillus sp. JDR-2]
gi|247544721|gb|ACT01740.1| ribonuclease H [Paenibacillus sp. JDR-2]
Length = 128
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELM--AAIKALTALKYP 66
+ Y DGA +GNPGP G G+ ++ G+ + S N+ E L K
Sbjct: 2 IEVYLDGASAGNPGPSGAGIFIKNHGEVERYSIPLGVMDNHEAEFRTFTLALELCIRKEY 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V TDS +V++ + K + L + + WI
Sbjct: 62 KTVSFRTDSQFVNRAV-------EIEFVKNKKFAPLLLEALKLT----KQFELFFMMWIP 110
Query: 127 GHAGNQENEKVDRIARNAAV 146
EN+ D+++R A
Sbjct: 111 S----SENKSADQLSRAAIR 126
>gi|168210947|ref|ZP_02636572.1| ribonuclease H1 [Clostridium perfringens B str. ATCC 3626]
gi|170710979|gb|EDT23161.1| ribonuclease H1 [Clostridium perfringens B str. ATCC 3626]
Length = 203
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 3/143 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + Y DG+ + G+G++L K I G + L + +
Sbjct: 64 KNIVFYVDGSFNEKTKNVGYGLVLIINNKVIIKDLG-TTHPHEETSLRNILGEVKGAIKA 122
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ L + F + G + + K++ +K
Sbjct: 123 TDIALANGYKEITIVFDYIGIEKWAKGEWKAKNE--VTKFYKKIMKNRMKYIKINFRKVK 180
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
H+ ++ N++ DR+A+ + FK
Sbjct: 181 SHSNDKWNDEADRLAKIGSGIFK 203
>gi|224154272|ref|XP_002188773.1| PREDICTED: similar to Pol polyprotein [Taeniopygia guttata]
Length = 1252
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I SG T+ + + A+ L ++
Sbjct: 708 FTDGSSYVISGKRHAGYAV---TTSREVIESGPLSANTSAQKAEIIALTRALELAKGREI 764
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ ++A KV + IK H
Sbjct: 765 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHSQEILRLLDAVQLPEKVAIMHIKAH 824
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++AA
Sbjct: 825 QKVSSELEEGNMLADREAKDAAK 847
>gi|114575923|ref|XP_001150446.1| PREDICTED: ribonuclease H1 isoform 1 [Pan troglodytes]
Length = 265
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G GV + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ K++LYTDS + G + W++ W++NGWKTS K V N + ++ + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
>gi|189909153|ref|YP_001961122.1| Pol [Macaque simian foamy virus]
gi|110282985|sp|P23074|POL_SFV1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Protease/Reverse transcriptase; AltName:
Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H;
Short=RNase H; Contains: RecName: Full=Integrase;
Short=IN; AltName: Full=p42In
Length = 1149
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGV----LLRYKGKEKIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+ + S + T E+ A
Sbjct: 597 YTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKIVHQWSIPLGDHTAQLAEIAAVEFACKK 656
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK ++++ W E +
Sbjct: 657 ALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLKPDI 716
Query: 121 DLYWIKGHAG------NQENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 717 IIMHEKGHQQPMTTLHTEGNNLADKLATQG 746
>gi|1334942|emb|CAA41394.1| pol [Simian foamy virus]
Length = 970
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGV----LLRYKGKEKIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+ + S + T E+ A
Sbjct: 609 YTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKIVHQWSIPLGDHTAQLAEIAAVEFACKK 668
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK ++++ W E +
Sbjct: 669 ALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLKPDI 728
Query: 121 DLYWIKGHAG------NQENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 729 IIMHEKGHQQPMTTLHTEGNNLADKLATQG 758
>gi|94208|pir||S18738 pol protein - simian foamy virus (fragment)
Length = 1161
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGV----LLRYKGKEKIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G+ + S + T E+ A
Sbjct: 609 YTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKIVHQWSIPLGDHTAQLAEIAAVEFACKK 668
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK VL+ TDS YV + ++ + W+ NG+ + KK ++++ W E +
Sbjct: 669 ALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLKPDI 728
Query: 121 DLYWIKGHAG------NQENEKVDRIARNA 144
+ KGH + N D++A
Sbjct: 729 IIMHEKGHQQPMTTLHTEGNNLADKLATQG 758
>gi|242798615|ref|XP_002483206.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716551|gb|EED15972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 533
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 206 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 264
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D+ ++ + + V +
Sbjct: 265 LDPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 313
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 314 WVPGHSGIEGNEQADQAAKRAASK 337
>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1672
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 8/143 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAIKALT--ALK 64
+TD A N G +++ + G EK T EL+A L
Sbjct: 1361 VFTD-AAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRS 1419
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLY 123
+ + + + S + + ++ E + + L
Sbjct: 1420 HSSEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQ 1479
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W+ GH+G + NE D++A+ +
Sbjct: 1480 WVPGHSGIKGNEMADQLAKQSIN 1502
>gi|313231328|emb|CBY08443.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 18/156 (11%)
Query: 7 REVHAYTDGACSGNP-----GPGGWGVLLRYKGKEKIISGGEKETTNN--------RMEL 53
+ YTDGA SGN G GV + I + +N
Sbjct: 23 DTIVCYTDGAASGNHTTDGVRFSGSGVFWGRGARSDSIHYPKFGEEHNDLNTNQYAEARA 82
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNG-----WKTSDKKTVKNIDLW 108
+ + L TDS +V K + +I W + W+T VK+ D+W
Sbjct: 83 ALYAARHAQRRGFDVIELRTDSRFVIKSMTNYIWSWLEQDSSDGIWRTQRGTPVKHQDIW 142
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ E +++ +++ H G N++ DR+A A
Sbjct: 143 QEIHEIRDDVRINFKYVRAHVGEDGNKEADRLAVKA 178
>gi|297587632|ref|ZP_06946276.1| ribonuclease HI [Finegoldia magna ATCC 53516]
gi|297574321|gb|EFH93041.1| ribonuclease HI [Finegoldia magna ATCC 53516]
Length = 202
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-------ETTNNRMELMAAIKA 59
E AY DG+ + G +G +L + GK + + +
Sbjct: 64 NECVAYVDGSFKKDTGEYSFGCVLFHNGKIDKFNQKFPQSEFSTHRNVSGEVSGSVFAIK 123
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + + W+ N T K E Q
Sbjct: 124 KAVELKMDKITIFYDYQGIESWANGD---WKTNNNLTKSYKKFI--------DEIKPQID 172
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
++ +KGH+ + N+ D +A+ A
Sbjct: 173 INFVKVKGHSNDTYNDMADELAKQA 197
>gi|727181|gb|AAA64258.1| pol [Simian immunodeficiency virus]
Length = 1049
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ N G G + +Y + E T N+ + AIK KV +
Sbjct: 628 YVDGACNRNSKEGKAGYITQYGKQRVEK----LEQTTNQQAELVAIKMALEDSGE-KVNI 682
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + + L W+ H G
Sbjct: 683 VTDSQYAMGILT---------AQPTQSDSPLVEQIIALMVKK----RAIYLQWVPAHKGI 729
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 730 GGNEEIDKLVSQGIR 744
>gi|331703338|ref|YP_004400025.1| ribonuclease H-like protein [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801893|emb|CBW54046.1| Ribonuclease H related protein [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 205
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN--RMELMAAIKALTALKYP- 66
AYTDG+ + +GV++ +K +E +S + + R + + +
Sbjct: 66 IAYTDGSYNTLDNTFSYGVVVFWKNREFHLSQRFDNQSISSLRNVAGEVLAVKQTIMFCV 125
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KVL+ D V K + +W+ N T + K N + Q +V+
Sbjct: 126 ANKIKKVLICHDYQGVSKWA---LDQWKANLDFTKEYKEFFN--------KYKDQVEVEF 174
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIK H N+ N+ D++A+NA++ F
Sbjct: 175 KWIKSHTNNKYNDLADKLAKNASLEF 200
>gi|255940342|ref|XP_002560940.1| Pc16g06030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585563|emb|CAP93273.1| Pc16g06030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 11 AYTDGACSGNPGP---GGWGVLL--------RYKGKEKIISGGEKETTNNRMELMAAIKA 59
YTDG C N P G + R+ + K +G + T +R ++ A + A
Sbjct: 80 IYTDGTCMDNGRPHARAGCSFVYNESTSGFARFPLEYKGPTGQQHPMTIDRAQVRAVVAA 139
Query: 60 LTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV--- 112
L + ++++ TDS YV G ++ +W Q W T + ++N DLW +
Sbjct: 140 LRYRDWAADGFSRLIIATDSDYVVDGITRDAHEWTQFNWTTRAGEPIRNRDLWECLLGEV 199
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
E A+ + + + + + N K DR A+ AA
Sbjct: 200 EMWAERGMSIQFWR--VPRELNMKADRHAKEAA 230
>gi|317125175|ref|YP_004099287.1| ribonuclease H [Intrasporangium calvum DSM 43043]
gi|315589263|gb|ADU48560.1| ribonuclease H [Intrasporangium calvum DSM 43043]
Length = 350
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYK------GKEKIISGGEKETTNNRMELMAAIKAL 60
R++ DG GNPG G+G L+R + G L+A ++A
Sbjct: 11 RDLVVEADGGSRGNPGVAGYGALVRDGASGAVLIELAEPLGLASNNVAEYSGLLAGLRAA 70
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ +V + DS V + S K D + + + +A V
Sbjct: 71 AEIDSAARVHVRMDSKLVVEQMSGRWKVK------HEDMRRLAGEVREVLREIEAAGGSV 124
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
WI + N+ D ++ A
Sbjct: 125 HFEWIP----RERNKAADLLSNEAMD 146
>gi|126331785|ref|XP_001372502.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 1838
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 7/151 (4%)
Query: 5 HLREVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
E+ +TDG+ P G G + + + E T+ + + A++A
Sbjct: 1280 PNPELVYFTDGSSFITPSGARVAGAAVVNDEGIVVWAAKLPEGTSAQRAELLALEAALRA 1339
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDL 122
+V +YTDS Y + + G+ TS K + ++ + + +V +
Sbjct: 1340 ARGKRVNIYTDSRYAFATLHVHAPIYHERGYVTSTGKPIAHLRNIQELLGAVWEPRQVSV 1399
Query: 123 YWIKGHA---GNQ--ENEKVDRIARNAAVSF 148
GH + N D AR AA+
Sbjct: 1400 IHTPGHQKGDSHPALGNRWADEAARKAAIQA 1430
>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 334
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 13/160 (8%)
Query: 1 MDSKHLR---EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRME 52
M ++ +R +V Y+D + G G + E S G + + E
Sbjct: 1 MRTETIRSISDVVVYSDASGRH--GHLGAAAVTLDNNLEVAESVQIQVGSMDRWSVHAAE 58
Query: 53 LMAAIKALTALKYPCKVLLYTD---SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
L+ + A+ + + + + L
Sbjct: 59 LIGILHAIEIVNKVASERRRLHGEQVRLATILSDSMSALQAIQTPGNKSGQRIIHAILQA 118
Query: 110 KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + L WI GH N+ DR+A+ AA+ K
Sbjct: 119 AINSKTHGVTIRLQWIPGHCAAPGNDSADRLAKEAAIPGK 158
>gi|242825403|ref|XP_002488433.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712251|gb|EED11677.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 458
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 138 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 196
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + D+ ++ + + V +
Sbjct: 197 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 245
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 246 WVPGHSGIEGNEQADQAAKRAASK 269
>gi|322511036|gb|ADX06349.1| putative ribonuclease H1 [Organic Lake phycodnavirus 2]
Length = 198
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ Y DG+C N G G+ + S +NN EL+A I+ +K
Sbjct: 58 IYVYCDGSCIHNGKSNAKAGIGIYFGENDPRNV-SETINGHSNNVAELIAMIRVYHYVKK 116
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + +DS Y ++ KK + + WK + + N +L + + + +
Sbjct: 117 --DITIVSDSKYALHCVKEYGKKQEIDLWKNN----IPNQELVKQLYQTYKDTNIQFMHV 170
Query: 126 KGHAGNQ-----ENEKVDRIA 141
H + N D++A
Sbjct: 171 YAHTNKKDIHSIGNSMADKLA 191
>gi|315272259|gb|ADU02708.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|300811097|gb|ADK35828.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|158534847|gb|ABW72065.1| TE1b [Blumeria graminis f. sp. hordei]
Length = 894
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 5/138 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ AY+D + G+ G WG +L+ GK ++ G + ++
Sbjct: 589 DICAYSDRSSEGH-GRSAWGFVLKRDGK-TLLKGCGIKHGGEVLDAEILGARKALEAALE 646
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI---DLWMKFVEASAQHKVDLYW 124
L D + Q + + T + D +F S +V + W
Sbjct: 647 AALGLLDRENGGRNGRQRVNVLIDSQSVVKALSTGTSTTSLDDVHQFRALSKNARVSVKW 706
Query: 125 IKGHAGNQENEKVDRIAR 142
I H+G + NE+ DR AR
Sbjct: 707 IPAHSGIEGNEEADRAAR 724
>gi|317033737|ref|XP_001395382.2| hypothetical protein ANI_1_1620104 [Aspergillus niger CBS 513.88]
Length = 244
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 2 DSKHLREVHAYTDGACSGNPG---PGGWGVLLRY--------------KGKEKIISGGEK 44
+ R++ YT G C N GG GV+ R + K SG +
Sbjct: 63 RRNNPRQLLLYTKGTCLNNGEAQPRGGCGVVYRSAVDLPEGKMNHFKIPLEIKGPSGRKN 122
Query: 45 ETTNNRMELMAAIK----ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK 100
T++R EL A I + K+++ TDS YV +G + W++ W Q GWKT
Sbjct: 123 PHTSDRAELRAVIAACRFRCWTGEGFNKLVIATDSEYVVEGATCWVQGWIQRGWKTRTGN 182
Query: 101 TVKNIDLWMK---FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V N DLW +E H +++ + + N R+A AA+
Sbjct: 183 PVNNRDLWECLLGELERWYDHGMEIQFW--QIPRECNTDAARLAEQAALE 230
>gi|315272252|gb|ADU02702.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|315272210|gb|ADU02666.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|300811111|gb|ADK35840.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|242825397|ref|XP_002488432.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712250|gb|EED11676.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 733
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMA 55
+ ++DG+ + G G GV L+ ++ E + G + M +
Sbjct: 477 RPGTM----VWSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVAT 531
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
A++ + + + D+ + + A
Sbjct: 532 ALEWALERQPLGPIWILLDAQNAIDRLKSARPG---------PGQALVLRAHRAVEKLAM 582
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G NE+ D+ A+ AA
Sbjct: 583 RGQPVTIQWVPGHSGVVGNEQADQAAKRAASK 614
>gi|291465057|gb|ADE05995.1| pol [Squirrel monkey foamy virus]
Length = 1134
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWG---VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDG+ +P P G G + + K + +AA++
Sbjct: 595 YTDGSSIKSPDPTKTHSSGMGIVQAIYEPNFQIKHQWSIPLGDHTAQYAEIAAVEFACKK 654
Query: 64 --KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-V 120
+ VL+ TDS YV + + + W+ NG+ + KK +K+I W E+ HK +
Sbjct: 655 ALQVTGPVLIVTDSDYVARSVNNELNFWRSNGFVNNKKKPLKHISKWKSISESLLLHKNI 714
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ GH + Q N D++A
Sbjct: 715 TIVHEPGHQPSSTSVHTQGNALADKLAVQG 744
>gi|315652414|ref|ZP_07905402.1| ribonuclease HI [Eubacterium saburreum DSM 3986]
gi|315485313|gb|EFU75707.1| ribonuclease HI [Eubacterium saburreum DSM 3986]
Length = 208
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 18/141 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKYPC-- 67
AY DG+ +G+++ + E EK+ ++ + I+ A C
Sbjct: 75 AYVDGSYDDTTKSYSYGMVMMHGEDELHFFKKFEKDDMSDMRNVAGEIEGSMAAMKYCIE 134
Query: 68 ----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D + K + K + +AS VD
Sbjct: 135 NGIKSISIFYDYEGIQKWCNGDW-----------KAKKEGTKRYVEFYKDASRLVDVDFI 183
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+KGH+G++ N+ D +A+ A
Sbjct: 184 KVKGHSGDKYNDLADELAKKA 204
>gi|156540942|ref|XP_001599975.1| PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia
vitripennis]
Length = 1153
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 12/145 (8%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
E+ +TDG+ + G GV G +K S K N + AI+ L
Sbjct: 895 DEISIFTDGSKT--IKSMGAGVYSEQLGVQK--SYRLKNVCNILQAEILAIEEAARLTQL 950
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ Y + + K + K V + + ++ S +V + W+
Sbjct: 951 NDGAPMKGTIY-----THSQAALKTLASKLTRSKAVMSCREALSWIRNS---EVGICWVP 1002
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH + N K D +A+ A +K
Sbjct: 1003 GHNSVEGNIKADELAKLGAEKDSSK 1027
>gi|153809918|ref|ZP_01962586.1| hypothetical protein RUMOBE_00299 [Ruminococcus obeum ATCC 29174]
gi|149834096|gb|EDM89176.1| hypothetical protein RUMOBE_00299 [Ruminococcus obeum ATCC 29174]
Length = 203
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------ELMAAIKALT 61
V Y DG+ +G+++ GKE+ S + +M + A
Sbjct: 68 VEIYVDGSYHAGTKEFSYGMVVLINGKEEKFSQKMSDPELAQMRNVAGEIKGSEAAMQYA 127
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+++Y D + + I + +A + ++
Sbjct: 128 LDHKIPSIIIYHDYQGIASWCNGDW-----------KANKAGTIAYRDFYRKAKERVHIE 176
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
+KGH+ ++ N+ VD +A+ A
Sbjct: 177 FRKVKGHSNDKYNDMVDELAKEA 199
>gi|291460446|ref|ZP_06599836.1| putative ribonuclease H1 [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417013|gb|EFE90732.1| putative ribonuclease H1 [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 246
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 9/139 (6%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALKYP 66
AY DG+ + G +G +L + E SG + E R + ++ A+
Sbjct: 111 IAYVDGSYNALSGVYAYGAILLERSGELSYFQGSGSDPELAVMRNVSGEILGSMRAVLEG 170
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ L + + + + Q I E + + +
Sbjct: 171 IRHGLSSLTIFYDYMGIEAWADGQW------KCNKKGTIAYRDFIKEKRKEIAISFRKVP 224
Query: 127 GHAGNQENEKVDRIARNAA 145
H+G NE DRIA+ AA
Sbjct: 225 AHSGVLFNELADRIAKEAA 243
>gi|18310432|ref|NP_562366.1| ribonuclease H-related protein [Clostridium perfringens str. 13]
gi|18145112|dbj|BAB81156.1| ribonuclease H-related protein [Clostridium perfringens str. 13]
Length = 209
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y DG+ + +G L+ + G + + A+K
Sbjct: 73 IYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMK---A 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + + T + + E KV IKGH
Sbjct: 130 IEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIKVRFKKIKGH 189
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN+ N++ D +A+ A S
Sbjct: 190 SGNKFNDRADILAKKALESL 209
>gi|302915144|ref|XP_003051383.1| hypothetical protein NECHADRAFT_80795 [Nectria haematococca mpVI
77-13-4]
gi|256732321|gb|EEU45670.1| hypothetical protein NECHADRAFT_80795 [Nectria haematococca mpVI
77-13-4]
Length = 306
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLRYKG-----------KEKIISGGEKETTNNR 50
+ E + DGAC + G GW + + + + G E TNNR
Sbjct: 131 NPNEFLIFVDGACLDSGGANPRAGWAIYFKPRSGNDSGMVSGRLELVGPWGDYHEHTNNR 190
Query: 51 MELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID 106
EL A + AL + K+++ T S YV KG ++W+ +W NGW+TS+++ VKN D
Sbjct: 191 AELRAVLAALRFRNWPGEGFNKLVIATHSEYVAKGATEWVLRWLWNGWRTSNREAVKNRD 250
Query: 107 LWMKFVEASAQHKVDLYWI-KGHAGNQENEKVDRIARNAAVS 147
LW + + + + EN +R+A+ AA
Sbjct: 251 LWQALLGEFERLEELGLKVEFWKIPRSENPIANRVAKQAAKE 292
>gi|224077608|ref|XP_002305325.1| predicted protein [Populus trichocarpa]
gi|222848289|gb|EEE85836.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 16/136 (11%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPGP G G +LR + + E TNN E A + L L
Sbjct: 122 DGASKGNPGPAGAGAVLRAEDGSMVCRLREGLGIATNNVAEYRAVLLGLKH-------AL 174
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
Y+ + Q G ++ + + ++ H
Sbjct: 175 KKGFKYICVQGDSNLVCMQIQGLWKLKNQNLADLCKEAKELKDMFTSFQIK------HVP 228
Query: 131 NQENEKVDRIARNAAV 146
+ N + D A AA
Sbjct: 229 REFNFEADVQANLAAN 244
>gi|156052317|ref|XP_001592085.1| hypothetical protein SS1G_06324 [Sclerotinia sclerotiorum 1980]
gi|154704104|gb|EDO03843.1| hypothetical protein SS1G_06324 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 452
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 8/143 (5%)
Query: 5 HLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ ++DG+ G+G + G + + + ++ + A
Sbjct: 281 PPEDYSIFSDGSEQTIDRKHHVGYGYAIYRNGTQIATGYKQIHSDSHVFDAEAIGAWRGL 340
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + S + + + K +A Q + +
Sbjct: 341 EHLISTLAGPPNGRIWMCIDSTSVIWG------MRGDAPPTSQWAFHKCHKAIRQLNIRV 394
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W GH + NE+ DR+A A
Sbjct: 395 KWSPGHMEIEGNEEADRLANAGA 417
>gi|13383738|gb|AAK21112.1|AF327878_2 pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V YTDG G + + ++ G T R AI+
Sbjct: 609 VTIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|242806002|ref|XP_002484651.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715276|gb|EED14698.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 475
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALTALKY 65
++ ++DG+ + GG G + + + S E AAI TA
Sbjct: 183 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAAIAYPTAQFA 241
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + + S Q+ +T+ K + + + + W+
Sbjct: 242 TNLWICLDNLEVAIRLLSPSTGSSQEIFE---SFRTLAAAWPLRKRLPHTKSGSIQIRWV 298
Query: 126 KGHAGNQENEKVDRIARNAAVSF 148
GHA ENE D A+ A S
Sbjct: 299 PGHAKIPENEAADLAAKEGAASI 321
>gi|15614333|ref|NP_242636.1| hypothetical protein BH1770 [Bacillus halodurans C-125]
gi|10174388|dbj|BAB05489.1| BH1770 [Bacillus halodurans C-125]
Length = 135
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIK--ALTALKY 65
+H + DGA +G+PGP G G+ + K + +N+ E A I +
Sbjct: 2 IHVFIDGASAGDPGPSGAGIFIDDKNGRLEHLTIPLGRLSNHEAEFHALIYALRFCQEQG 61
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + TDS + + + + Q+ + L + + W+
Sbjct: 62 WNELWVRTDSKLLEEAIEKRYVRNQRYR-----------LLLEEALLLIDRFKLFFIKWV 110
Query: 126 KGHAGNQENEKVDRIARNAAV 146
+EN+K D +AR A
Sbjct: 111 PS----KENKKADELARTAIR 127
>gi|193216892|ref|YP_002000134.1| ribonuclease HI [Mycoplasma arthritidis 158L3-1]
gi|193002215|gb|ACF07430.1| ribonuclease HI [Mycoplasma arthritidis 158L3-1]
Length = 487
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 7 REVHAYTDGACSG--NPG-PGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIK 58
EV A+ DG+ S N +G +L E ++ + N E +
Sbjct: 74 DEVIAFVDGSYSSQKNGKEKYSFGAILINNDSENNLFKSFVASKYMNSKNIAGETEGVKQ 133
Query: 59 ALTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
A++ K+ ++ D + K ++ KT+ D S
Sbjct: 134 AISWAIQAKKRKIKIFHDYEGIEKWANKKW-----------SPKTLVARDYVNFIEINSK 182
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
++ +K H+G NEK D++AR A
Sbjct: 183 AIDIEFAHVKSHSGIIYNEKADQLARRA 210
>gi|168206354|ref|ZP_02632359.1| putative ribonuclease HI [Clostridium perfringens E str. JGS1987]
gi|169347269|ref|ZP_02866208.1| putative ribonuclease HI [Clostridium perfringens C str. JGS1495]
gi|169296665|gb|EDS78796.1| putative ribonuclease HI [Clostridium perfringens C str. JGS1495]
gi|170662169|gb|EDT14852.1| putative ribonuclease HI [Clostridium perfringens E str. JGS1987]
Length = 209
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y DG+ + +G L+ + G + + A+K
Sbjct: 73 IYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMK---A 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + + T + + E KV IKGH
Sbjct: 130 IEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIKVRFKKIKGH 189
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN+ N++ D +A+ A S
Sbjct: 190 SGNKFNDRADILAKKALESL 209
>gi|215446460|ref|ZP_03433212.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
gi|289758350|ref|ZP_06517728.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
gi|289713914|gb|EFD77926.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
Length = 340
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 16/140 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ TNN E I L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + + S +++
Sbjct: 60 AVKLGATEA-------AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA-SQFRRINY 111
Query: 123 YWIKGHAGNQENEKVDRIAR 142
W+ N DR+A
Sbjct: 112 EWVP----RARNTYADRLAN 127
>gi|170289306|ref|YP_001739544.1| ribonuclease H [Thermotoga sp. RQ2]
gi|170176809|gb|ACB09861.1| ribonuclease H [Thermotoga sp. RQ2]
Length = 221
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D++ + AY DG+ G G++L Y K +E E ++R +
Sbjct: 59 LDTETM---IAYIDGSYDE---VCGSGIVLCYRGKKEEYYFWTNIGEFKDSRNITGEIMA 112
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ Y K + + K V +
Sbjct: 113 ALFAMDYALKKGARK-----LVLRYDLEGLEKWATEEYRTNKLVTKVYRHYYRKFCQMGL 167
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
KV IK H+GN N++ D +A+ AA N
Sbjct: 168 KVVFEKIKSHSGNFCNDEADSLAKKAAKKESN 199
>gi|15609365|ref|NP_216744.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Rv]
gi|15841722|ref|NP_336759.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CDC1551]
gi|31793409|ref|NP_855902.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis
AF2122/97]
gi|121638111|ref|YP_978335.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662048|ref|YP_001283571.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|148823436|ref|YP_001288190.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
F11]
gi|167969373|ref|ZP_02551650.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|215403619|ref|ZP_03415800.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
02_1987]
gi|215411958|ref|ZP_03420730.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
94_M4241A]
gi|215427603|ref|ZP_03425522.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T92]
gi|215431164|ref|ZP_03429083.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
EAS054]
gi|219558207|ref|ZP_03537283.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T17]
gi|224990605|ref|YP_002645292.1| hypothetical protein JTY_2240 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798706|ref|YP_003031707.1| hypothetical protein TBMG_01752 [Mycobacterium tuberculosis KZN
1435]
gi|254232381|ref|ZP_04925708.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365024|ref|ZP_04981070.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551269|ref|ZP_05141716.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187226|ref|ZP_05764700.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|260201345|ref|ZP_05768836.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T46]
gi|260205527|ref|ZP_05773018.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289443737|ref|ZP_06433481.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447858|ref|ZP_06437602.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289553984|ref|ZP_06443194.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570348|ref|ZP_06450575.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574915|ref|ZP_06455142.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289745502|ref|ZP_06504880.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289750825|ref|ZP_06510203.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754337|ref|ZP_06513715.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|294993616|ref|ZP_06799307.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
210]
gi|297634820|ref|ZP_06952600.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 4207]
gi|297731811|ref|ZP_06960929.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN R506]
gi|298525721|ref|ZP_07013130.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776483|ref|ZP_07414820.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|306789374|ref|ZP_07427696.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|306793697|ref|ZP_07431999.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|306798089|ref|ZP_07436391.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|306808541|ref|ZP_07445209.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|306972595|ref|ZP_07485256.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|307084891|ref|ZP_07494004.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|313659145|ref|ZP_07816025.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN V2475]
gi|54040461|sp|P64956|Y2253_MYCBO RecName: Full=Uncharacterized protein Mb2253c
gi|54042871|sp|P64955|Y2228_MYCTU RecName: Full=Uncharacterized protein Rv2228c/MT2287
gi|1261930|emb|CAA94651.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13881979|gb|AAK46573.1| phosphoglycerate mutase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31619001|emb|CAD97106.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493759|emb|CAL72234.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601440|gb|EAY60450.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150538|gb|EBA42583.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506200|gb|ABQ74009.1| hypothetical protein MRA_2247 [Mycobacterium tuberculosis H37Ra]
gi|148721963|gb|ABR06588.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773718|dbj|BAH26524.1| hypothetical protein JTY_2240 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253320209|gb|ACT24812.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416656|gb|EFD13896.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420816|gb|EFD18017.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289438616|gb|EFD21109.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539346|gb|EFD43924.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289544102|gb|EFD47750.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686030|gb|EFD53518.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289691412|gb|EFD58841.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694924|gb|EFD62353.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|298495515|gb|EFI30809.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215119|gb|EFO74518.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|308334063|gb|EFP22914.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|308337869|gb|EFP26720.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|308341630|gb|EFP30481.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|308345037|gb|EFP33888.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|308357998|gb|EFP46849.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|308365550|gb|EFP54401.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|323719131|gb|EGB28276.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|326903842|gb|EGE50775.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|328458469|gb|AEB03892.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 364
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 16/140 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ TNN E I L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + + S +++
Sbjct: 60 AVKLGATEA-------AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA-SQFRRINY 111
Query: 123 YWIKGHAGNQENEKVDRIAR 142
W+ N DR+A
Sbjct: 112 EWVP----RARNTYADRLAN 127
>gi|315272231|gb|ADU02684.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 INIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|218508288|ref|ZP_03506166.1| ribonuclease H [Rhizobium etli Brasil 5]
Length = 45
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
EA +HKV L+W+KGHAG+ ENE+ D +AR FK
Sbjct: 2 EARNRHKVTLHWVKGHAGHPENERADELARRGMEPFKK 39
>gi|315056341|ref|XP_003177545.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
gi|311339391|gb|EFQ98593.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
Length = 220
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Query: 5 HLREVHAYTDGACSGNP---GPGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAI 57
+LR + DGACS N GV + Y ++ S + +
Sbjct: 63 NLRSIIIAVDGACSENGMETSRAAIGVYVGKKSDYNASMRLDSSWATNQKAELAAGIYGL 122
Query: 58 KALTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID---- 106
A + +V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N
Sbjct: 123 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQPVTNHYLFKE 182
Query: 107 -LWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
W AS++ V + ++ + N + D++AR A
Sbjct: 183 LAWRIRDLASSRVNVYFWHVR----REHNHEADQLARAA 217
>gi|295109120|emb|CBL23073.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Ruminococcus obeum A2-162]
Length = 245
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------ELMAAIKALT 61
V Y DG+ +G+++ GKE+ S + +M + A
Sbjct: 110 VEIYVDGSYYVGTKEFSYGMVVLINGKEEKFSQKMTDPELAQMRNVAGEIKGSEAAMQYA 169
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+++Y D + + I + +A + ++
Sbjct: 170 LDHKIPSIIIYHDYQGIASWCNGDW-----------KANKPGTIAYRDFYQKAKEKVHIE 218
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
+KGH+ ++ N+ VD +A+ A
Sbjct: 219 FRKVKGHSNDKYNDMVDELAKEA 241
>gi|300811090|gb|ADK35822.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|310830690|ref|YP_003965791.1| Ribonuclease HI [Paenibacillus polymyxa SC2]
gi|309250157|gb|ADO59723.1| Ribonuclease HI [Paenibacillus polymyxa SC2]
Length = 236
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 45/134 (33%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ + N +G+ K I G+ + + L A+
Sbjct: 80 YVDGSYNNNIPNYSYGICAVLNEKVVHIQNGQGNNPDAIEMQQIGGELLGAITSLQYAKN 139
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
V + WK ++K + + F ++ KV+ +K H GN
Sbjct: 140 NRHPQVVILHDYLGVAHHATGFWKRTNKYSERYFTWMQNFFSSNTDMKVNFVKVKAHTGN 199
Query: 132 QENEKVDRIARNAA 145
NE D +A+ A
Sbjct: 200 NFNEIADGLAKLAI 213
>gi|315272273|gb|ADU02720.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T+ R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSSGKTKQKRLGPVTHQTSER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + DS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVIDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|315282898|ref|ZP_07871203.1| ribonuclease HI [Listeria marthii FSL S4-120]
gi|313613453|gb|EFR87292.1| ribonuclease HI [Listeria marthii FSL S4-120]
Length = 133
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + ++ + TN+ E +A L K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKADGIYEQLAIPLEIMTNHEAEFIAIKLGLEEALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K ++ + ++ +
Sbjct: 62 FIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILKMADSLELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|168210040|ref|ZP_02635665.1| putative ribonuclease HI [Clostridium perfringens B str. ATCC 3626]
gi|168216837|ref|ZP_02642462.1| putative ribonuclease HI [Clostridium perfringens NCTC 8239]
gi|182627153|ref|ZP_02954867.1| putative ribonuclease HI [Clostridium perfringens D str. JGS1721]
gi|170711878|gb|EDT24060.1| putative ribonuclease HI [Clostridium perfringens B str. ATCC 3626]
gi|177907471|gb|EDT70140.1| putative ribonuclease HI [Clostridium perfringens D str. JGS1721]
gi|182381114|gb|EDT78593.1| putative ribonuclease HI [Clostridium perfringens NCTC 8239]
Length = 209
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y DG+ + +G L+ + G + + A+K
Sbjct: 73 IYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMK---A 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + + T + + E KV IKGH
Sbjct: 130 IEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIKVRFKKIKGH 189
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN+ N++ D +A+ A S
Sbjct: 190 SGNKFNDRADILAKKALESL 209
>gi|110799769|ref|YP_696139.1| putative ribonuclease HI [Clostridium perfringens ATCC 13124]
gi|168214463|ref|ZP_02640088.1| putative ribonuclease HI [Clostridium perfringens CPE str. F4969]
gi|110674416|gb|ABG83403.1| putative ribonuclease HI [Clostridium perfringens ATCC 13124]
gi|170714101|gb|EDT26283.1| putative ribonuclease HI [Clostridium perfringens CPE str. F4969]
Length = 209
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
++ Y DG+ + +G L+ + G + + A+K
Sbjct: 73 IYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMK---A 129
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + + T + + E KV IKGH
Sbjct: 130 IEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIKVRFKKIKGH 189
Query: 129 AGNQENEKVDRIARNAAVSF 148
+GN+ N++ D +A+ A S
Sbjct: 190 SGNKFNDRADILAKKALESL 209
>gi|304439108|ref|ZP_07399027.1| probable ribonuclease [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372467|gb|EFM26054.1| probable ribonuclease [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 197
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-----ELMAAIKALT 61
E+ AY DG+ +GV L +G E+ S + N + EL AI A+
Sbjct: 63 DEILAYVDGSYRKEDHSYSYGVYLYSEGVEEKYSARFFDEENAKSRNVSGELKGAIIAMK 122
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+Y Y + + E + +V
Sbjct: 123 RGVELGYKKMYLHYDYRGIEDWALGNW---------KTNLDLTREYKKTYDEIKNKMEVK 173
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
+ H G NE VD++A+ A
Sbjct: 174 FIKVDAHTGVYYNELVDKLAKEA 196
>gi|291465063|gb|ADE06000.1| pol [Common marmoset foamy virus]
Length = 1149
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P G G++ E S + T E+ A
Sbjct: 596 YTDGSAIRSPDKNKSHSSGMGIVHAVFKPELTIEHQWSIPLGDHTAQYAEISAVEFACKK 655
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT-VKNIDLWMKFVEASAQHKV 120
A VL+ TDS YV + ++ + W+ NG+ + KK + +
Sbjct: 656 ANNISGPVLIVTDSDYVARSVNEELPFWRSNGFVNNKKKPLKHISKWKNISDSLLLKRDI 715
Query: 121 DLYWIKGHAGNQ------ENEKVDRIARNA 144
+ GH + N D++A
Sbjct: 716 IIVHEPGHKPSYTSIHTQGNNLADKLATQG 745
>gi|259503432|ref|ZP_05746334.1| ribonuclease H [Lactobacillus antri DSM 16041]
gi|259168510|gb|EEW53005.1| ribonuclease H [Lactobacillus antri DSM 16041]
Length = 129
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA----IKALTALK 64
+ YTD A GNPGP G G L+ ++ ++ N++ E AA
Sbjct: 2 IKIYTDAATRGNPGPTGIGALVLADHQQFQLTSTVANCDNHQGEFAAAEFGFRYLRRHFP 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+L YTDS + + K Q+ + V W
Sbjct: 62 AAQTILFYTDSRLLSDAIGKNYTKHYQSELDRLNALL-------------DYFPTVVTQW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
I + +N+ +A A S
Sbjct: 109 IP----DAQNQGAHHLANQALQSA 128
>gi|229824671|ref|ZP_04450740.1| hypothetical protein GCWU000182_00013 [Abiotrophia defectiva ATCC
49176]
gi|229791000|gb|EEP27114.1| hypothetical protein GCWU000182_00013 [Abiotrophia defectiva ATCC
49176]
Length = 227
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + E+ AY DG+ G G ++ G+ E A +
Sbjct: 85 EEECVSEITAYVDGSFLK-GKVFGCGCVILKDGEVIAEISEAYEDEELASMRNVAGEIKA 143
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ L S Q I W WKT+ + + + +V
Sbjct: 144 SELAMRYALDNGYKSISIYHDYQGIASWCLGEWKTNKAG---TVAYKEFYDSIKDRLRVY 200
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
+KGH+G+ N+ D +A+ A
Sbjct: 201 FVKVKGHSGDTYNDIADNLAKKA 223
>gi|254899424|ref|ZP_05259348.1| hypothetical protein LmonJ_06409 [Listeria monocytogenes J0161]
gi|254912437|ref|ZP_05262449.1| RNase H [Listeria monocytogenes J2818]
gi|254936764|ref|ZP_05268461.1| ribonuclease HI [Listeria monocytogenes F6900]
gi|258609360|gb|EEW21968.1| ribonuclease HI [Listeria monocytogenes F6900]
gi|293590420|gb|EFF98754.1| RNase H [Listeria monocytogenes J2818]
Length = 133
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + + TN+ E +A L K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLDAILEIADSLELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|116873315|ref|YP_850096.1| RNase H [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742193|emb|CAK21317.1| RNase H [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 133
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A L
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAVPLAVMTNHEAEFIAIKLGLEEALKTQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 FIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSVELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|312197342|ref|YP_004017403.1| phosphoglycerate mutase [Frankia sp. EuI1c]
gi|311228678|gb|ADP81533.1| Phosphoglycerate mutase [Frankia sp. EuI1c]
Length = 388
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+V DG GNPGP G+G L+R +G TNN E I L +
Sbjct: 4 KVVIEADGGSRGNPGPAGYGALVRDADSGALLAERAGAIGVATNNVAEYQGLIAGL---R 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+V D + Q +G ++ + + A+ V W
Sbjct: 61 AAAEVAPDADVEVRMD---SKLVVEQMSGRWKIKHPAMRPLAAEAAELVAARPSPVRYRW 117
Query: 125 IKGHAGNQENEKVDRI 140
I + N+ DR+
Sbjct: 118 IP----RERNKDADRL 129
>gi|303229554|ref|ZP_07316342.1| ribonuclease HI [Veillonella atypica ACS-134-V-Col7a]
gi|302515679|gb|EFL57633.1| ribonuclease HI [Veillonella atypica ACS-134-V-Col7a]
Length = 220
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 7 REVHAYTDGAC-SGNPGPGGWGVLLRYKGKEKIISG----GEKETTNNRMELMAAIKALT 61
+ AY DG+ N G G++ KE G E N EL+AA+ +
Sbjct: 82 NHLIAYIDGSYDKYNQSVGSGGIMFLNGNKETFSFGTKDEKYTEFWNVSGELLAAMHVME 141
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
Y+ K + N + KV
Sbjct: 142 YALTHGISKCSLYYDYMGIEMWATKKWKRNNVLTN---------EYAAFCERIFPHVKVY 192
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + H G+ NE D++A+ A K
Sbjct: 193 FHKVHAHTGDTYNEMADQLAKAGAAIGK 220
>gi|227485491|ref|ZP_03915807.1| ribonuclease HI [Anaerococcus lactolyticus ATCC 51172]
gi|227236490|gb|EEI86505.1| ribonuclease HI [Anaerococcus lactolyticus ATCC 51172]
Length = 194
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 5/138 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V AY DG+ + G GV+L G E+ ++ + +KA
Sbjct: 58 DTVVAYVDGSYNLPEKTYGAGVVLIKDGGEEHFKKSYTDSYYTHRNVAGEVKASEL---- 113
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + SY + Q + ++ +K
Sbjct: 114 -AIDIAIEKSYKKIIIHHDYQGIQAWAEGDWKANNDLTQSYKAFINDRKKHIEIAFVKVK 172
Query: 127 GHAGNQENEKVDRIARNA 144
GH+ ++ N+ DR+A++A
Sbjct: 173 GHSNDKYNDLADRLAKDA 190
>gi|156540552|ref|XP_001601944.1| PREDICTED: similar to pol-like protein [Nasonia vitripennis]
Length = 819
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 5/145 (3%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ L +TDG+ ++ + K S + + A
Sbjct: 548 PEKLNVTQIFTDGSKIREGDVS----VVGFAAWSKHQSFICAYKILDIASIYTAECKALL 603
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ ++ Y+ S+ N + +I + ++ KV L
Sbjct: 604 HTINRITDSHQNNEYIIFSDSKSALSALNNFNSRKSSPLIADIRQKLSYLADQNI-KVKL 662
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
WI H G NE VD +A+ AA++
Sbjct: 663 VWIPAHIGLTGNEIVDDMAKKAAIN 687
>gi|1711029|gb|AAB38321.1| FeSFV polymerase [Feline foamy virus]
gi|1805314|gb|AAC58531.1| reverse transcriptase [Feline foamy virus]
Length = 1156
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLL-----RYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
YTDG+ +P G G++ K++ S T E+ A
Sbjct: 593 YTDGSAITSPTKEGHLNAGMGIVYFINKDGDLHKQQEWSINLGNHTAQFAEIAAFEFALK 652
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-K 119
L +L+ TDS+YV K +++ + W NG+ + KK +K+I W +
Sbjct: 653 KCLPLRGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADFKKLRPD 712
Query: 120 VDLYWIKGH-----AGN-QENEKVDRIARNA 144
V + GH + + N D++A A
Sbjct: 713 VVVTHEPGHQKLDSSPHAYGNNLADQLATQA 743
>gi|34392233|emb|CAD92796.1| pol protein [Feline foamy virus]
Length = 1156
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLL-----RYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
YTDG+ +P G G++ K++ S T E+ A
Sbjct: 593 YTDGSAITSPTKEGHLNAGMGIVYFINKDGDLHKQQEWSINLGNHTAQFAEIAAFEFALK 652
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-K 119
L +L+ TDS+YV K +++ + W NG+ + KK +K+I W +
Sbjct: 653 KCLPLRGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADFKKLRPD 712
Query: 120 VDLYWIKGH-----AGN-QENEKVDRIARNA 144
V + GH + + N D++A A
Sbjct: 713 VVVTHEPGHQKLDSSPHAYGNNLADQLATQA 743
>gi|34392238|emb|CAD92800.1| pol protein [Feline foamy virus]
Length = 1156
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLL-----RYKGKEKIISGGEKETTNNRMELMAA-IKAL 60
YTDG+ +P G G++ K++ S T E+ A
Sbjct: 593 YTDGSAITSPTKEGHLNAGMGIVYFINKDGDLHKQQEWSINLGNHTAQFAEIAAFEFALK 652
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-K 119
L +L+ TDS+YV K +++ + W NG+ + KK +K+I W +
Sbjct: 653 KCLPLRGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADFKKLRPD 712
Query: 120 VDLYWIKGH-----AGN-QENEKVDRIARNA 144
V + GH + + N D++A A
Sbjct: 713 VVVTHEPGHQKLDSSPHAYGNNLADQLATQA 743
>gi|330934491|ref|XP_003304570.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
gi|311318749|gb|EFQ87344.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 24/158 (15%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIIS--GGEKETTNNRMELMA------ 55
+ + DGAC N P +GV + T+ R E+ A
Sbjct: 57 NSMVVFIDGACRNNGSPTARASYGVYFGPESPYNRYGLVPDSLPQTSTRAEIEALSQALE 116
Query: 56 -AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
++ + TDSS++ K SQWI+ W +NG S+ + V + + + E
Sbjct: 117 VIRAITDRDFELSRIKIATDSSFLVKAMSQWIETWIENGGIGSEGRRVAHFQILKQLHEM 176
Query: 115 SAQ--------HKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + + + N + D +A A
Sbjct: 177 LDYMEYSDAGGREVQFWHVP----RERNNEADALANKA 210
>gi|256750824|ref|ZP_05491709.1| hypothetical protein TeCCSD1DRAFT_0246 [Thermoanaerobacter
ethanolicus CCSD1]
gi|256750407|gb|EEU63426.1| hypothetical protein TeCCSD1DRAFT_0246 [Thermoanaerobacter
ethanolicus CCSD1]
Length = 51
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII 39
S ++ V YTDGACSGNPGPGGW +L YKG +K
Sbjct: 2 SNNIDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKKY 38
>gi|62326508|ref|YP_223871.1| protease/polymerase [Reticuloendotheliosis virus]
gi|57865346|gb|AAW57300.1| protease/polymerase [Reticuloendotheliosis virus]
Length = 1193
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYVRDGKRYAGAAVV---TLDSVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|310823614|ref|YP_003955972.1| ribonuclease h [Stigmatella aurantiaca DW4/3-1]
gi|309396686|gb|ADO74145.1| Ribonuclease H [Stigmatella aurantiaca DW4/3-1]
Length = 205
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKAL 60
L + Y+DGA GNPGP G G +L G + + I + TNN E M + L
Sbjct: 69 RAQLPRLRLYSDGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGL 128
Query: 61 TALK--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ ++ ++ DS + + + +
Sbjct: 129 KHARGLGTKEIEIFADSELLIRQLGGRYQVK----------SPTLRPLYEEAVKLLNDFS 178
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L + + N + D ++ A
Sbjct: 179 RVKLVHVP----REMNAEADEMSNRAIDE 203
>gi|115373690|ref|ZP_01460984.1| RNase H [Stigmatella aurantiaca DW4/3-1]
gi|115369237|gb|EAU68178.1| RNase H [Stigmatella aurantiaca DW4/3-1]
Length = 177
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKAL 60
L + Y+DGA GNPGP G G +L G + + I + TNN E M + L
Sbjct: 41 RAQLPRLRLYSDGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGL 100
Query: 61 TALK--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ ++ ++ DS + + + +
Sbjct: 101 KHARGLGTKEIEIFADSELLIRQLGGRYQVK----------SPTLRPLYEEAVKLLNDFS 150
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L + + N + D ++ A
Sbjct: 151 RVKLVHVP----REMNAEADEMSNRAIDE 175
>gi|242807844|ref|XP_002485040.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715665|gb|EED15087.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 839
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 265 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 323
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + D+ ++ + + V +
Sbjct: 324 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 372
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 373 WVPGHSGIEGNEQADQAAKRAASK 396
>gi|242825388|ref|XP_002488430.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712248|gb|EED11674.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 1650 WSDGS-RLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1708
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + D+ ++ + + V +
Sbjct: 1709 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 1757
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 1758 WVPGHSGIEGNEQADQAAKRAASK 1781
>gi|313623189|gb|EFR93446.1| ribonuclease HI [Listeria innocua FSL J1-023]
Length = 133
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + + + TN+ E +A L K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAAGIYEQFAIPLEVMTNHEAEFIAIKLGLEEALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 FIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSVELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|170031450|ref|XP_001843598.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870164|gb|EDS33547.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 390
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
+ I+ V DS ++ ++W+ W++N WK S K VKN + +
Sbjct: 88 FVVLIRIHGTHVVSEAVSSCIDSKFLIDSITKWLPGWKRNAWKLSTGKPVKNQVDFEELD 147
Query: 113 EA--SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++ + H G NE+ D +AR
Sbjct: 148 RELADKSIEIKWNHVDAHCGILGNERADALAREG 181
>gi|83630411|gb|ABC26818.1| polymerase [Reticuloendotheliosis virus]
Length = 1152
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 600 TLFTDGSSYIRDGKRYAGAAVV---TLDSVIWAEPLPIGTSAQKAELIALTKALEWSKDK 656
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 657 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 716
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 717 GHQKDDAPTSTGNRRADEVAREVA 740
>gi|16801059|ref|NP_471327.1| hypothetical protein lin1993 [Listeria innocua Clip11262]
gi|16414494|emb|CAC97223.1| lin1993 [Listeria innocua Clip11262]
Length = 133
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPGP G G++L+ G + + + TN+ E +A L K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAAGIYEQFAIPLEVMTNHEAEFIAIKLGLEEALKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 FIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSVELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVSQNKQADQLARQAIKKQK 128
>gi|242794486|ref|XP_002482384.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718972|gb|EED18392.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1025
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 67 WSDGS-RLDTGRAGAGVTLQAVPKGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 125
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 126 LDPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAKKLALRGQP---------VTIQWV 176
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 177 PGHSGIEGNEQADQAAKRAASK 198
>gi|302381062|ref|ZP_07269522.1| ribonuclease HI [Finegoldia magna ACS-171-V-Col3]
gi|302311109|gb|EFK93130.1| ribonuclease HI [Finegoldia magna ACS-171-V-Col3]
Length = 202
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 18/145 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTALK 64
E AY DG+ + G +G +L + GK + E + +R ++ A+K
Sbjct: 64 NECVAYVDGSFKKDTGEYSFGCVLFHNGKIDKFNKKYPQSEYSTHRNVSGEVSGSVFAIK 123
Query: 65 -----YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + + + E Q
Sbjct: 124 KAVELQMKKITIFYDYQGIESWANGDW-----------KTNNNLTRNYKKFIDEIKPQID 172
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
++ +KGH+ + N+ D +A+ A
Sbjct: 173 INFVKVKGHSNDTYNDMADELAKQA 197
>gi|281203787|gb|EFA77983.1| hypothetical protein PPL_08628 [Polysphondylium pallidum PN500]
Length = 264
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--------ISGGEKETTNNRMELMAAIKA 59
++ YTDGAC NPGPG WG L+ K + GGE +TTNNRMELMA I+
Sbjct: 171 KIVIYTDGACRRNPGPGSWGCLIFEGDNIKTLDEQTAKSLCGGEVKTTNNRMELMAVIQG 230
Query: 60 LTALKYPCKVLLYTDSSYVHKGFS 83
L + + S
Sbjct: 231 LEKKDKQKAKKKTNEHFHPSTHPS 254
>gi|2323287|gb|AAB66528.1| polyprotein [multiple sclerosis associated retrovirus]
Length = 768
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 8 EVHAYTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++ YTDG+ G G+ V+ E S T+ + + A+ L
Sbjct: 617 DLNLYTDGSSLAEKGLRKAGYAVISDNGILE---SNRLTPGTSAHLAELIALTWALELGE 673
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYW 124
+V +Y+DS Y + W++ + TS+ + + + + + +V +
Sbjct: 674 GKRVNIYSDSKYAYLVLHAHAAIWREREFLTSEGTPINHQEAIRRLLLAVQKPKEVAVLH 733
Query: 125 IKGHAGNQ-----ENEKVDRIARNAAVS 147
+GH + N + D A+ AA
Sbjct: 734 CQGHQEEEEREIEGNRQADIEAKKAARQ 761
>gi|300858913|ref|YP_003783896.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686367|gb|ADK29289.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206612|gb|ADL10954.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|302331163|gb|ADL21357.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|308276856|gb|ADO26755.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
Length = 385
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 47/150 (31%), Gaps = 20/150 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI---ISGGEKETTNNRMELMAAIKALT- 61
++ V DG GNPG G G +L +I ++ TNN E A + LT
Sbjct: 1 MK-VIIEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTA 59
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V + DS V + S K AS +
Sbjct: 60 ARELGATEVDVLMDSKLVVEQMSGRW----------KIKHPDMKQLALSCQHIASGFASI 109
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
WI +N + D +A A +
Sbjct: 110 TYTWIP----RNQNARADELANKAMDALAK 135
>gi|242775815|ref|XP_002478715.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
gi|218722334|gb|EED21752.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
Length = 1141
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 960 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1018
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 1019 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 1069
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 1070 PGHSGIEGNEQADQAAKRAASK 1091
>gi|242775805|ref|XP_002478713.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722332|gb|EED21750.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1959
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 1632 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1690
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 1691 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 1741
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 1742 PGHSGIEGNEQADQAAKRAASK 1763
>gi|242775784|ref|XP_002478709.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218722328|gb|EED21746.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 991
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 664 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 722
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 723 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 773
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 774 PGHSGIEGNEQADQAAKRAASK 795
>gi|242786294|ref|XP_002480777.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720924|gb|EED20343.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 1671 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1729
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 1730 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 1780
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 1781 PGHSGIEGNEQADQAAKRAASK 1802
>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
+V Y+D + G G G + E S G + + EL+ + A+
Sbjct: 926 DVVVYSDAS--GRYGHLGAAAVTLDNNLEVSESVQIQVGSMDRWSVHAAELIGILHAIEI 983
Query: 63 LKYPCKVLLYTDSS---YVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + + + + L +
Sbjct: 984 INKVASERRRLHAEQVRLATILSGSMSALQAIQTPGNKSGQRIIHAILEAAINTKTHGVT 1043
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L WI GH N+ DR+A+ AA+ K
Sbjct: 1044 IRLQWIPGHCAAPGNDSADRLAKEAAIPGK 1073
>gi|303235322|ref|ZP_07321940.1| ribonuclease HI [Finegoldia magna BVS033A4]
gi|302493636|gb|EFL53424.1| ribonuclease HI [Finegoldia magna BVS033A4]
Length = 202
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTALK 64
E AY DG+ + G +G +L + GK + E + +R ++ A+K
Sbjct: 64 NECVAYVDGSFKKDTGEYSFGCVLFHNGKIDKFNKKYPQSEYSTHRNVSGEVSGSVFAIK 123
Query: 65 -----YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + + W+ N T K E ++
Sbjct: 124 KAVELQMKKITIFYDYQGIESWANGD---WKTNNNLTKSYKKFI--------DEIKSKID 172
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
++ +KGH+ + N+ D +A+ A
Sbjct: 173 INFVKVKGHSNDTYNDMADELAKQA 197
>gi|71980394|gb|AAZ57418.1| polymerase [Reticuloendotheliosis virus]
Length = 1193
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIPHGKRYAGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + +
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYKERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCR 757
Query: 127 GHAGN-----QENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSAGNRRADEVAREVA 781
>gi|159029413|emb|CAO90789.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 283
Score = 57.2 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 45/156 (28%), Gaps = 20/156 (12%)
Query: 1 MDSKHLRE---VHAYTDGACSGNPGP-GGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
MD K + Y DG GNPG G V++ +GK S + TNN E
Sbjct: 5 MDKKAQKTDNSAVLYFDGGSRGNPGRAAGAAVIVLAEGKSLTTSRYMEIATNNEAEYTGL 64
Query: 57 IKALTALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
I L + + + DS V K
Sbjct: 65 IIGLEKAQELGLKSLEIRGDSQLVINQVKGDW----------KVKSDSLRPFYQRACQLV 114
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ ++ WI+ +N D A + K
Sbjct: 115 TQFDRISWRWIE----RAKNSVADAAANQCMDAAKK 146
>gi|331251535|ref|XP_003338362.1| hypothetical protein PGTG_20003 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317352|gb|EFP93943.1| hypothetical protein PGTG_20003 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 319
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 38/142 (26%), Gaps = 3/142 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
R V ++DG+ G G V K S A L AL
Sbjct: 138 PRAVVIFSDGSFHPEKGGAGAAV---CPSKNVFSSLLLGGDALVSNHESEAAGVLAALGL 194
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ TD + + N + + V W
Sbjct: 195 ALGLSRDTDVQRILILVDNQGVLKRLNDPLAPKPGQKIFEQINLSLALLPDHINVKFGWC 254
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH NE D++A++A S
Sbjct: 255 PGHKDILGNEMADQLAKDALES 276
>gi|110668352|ref|YP_658163.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109626099|emb|CAJ52550.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
Length = 221
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 10/139 (7%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ YTDG+ GNPGP G G ++ + + +R A A L C
Sbjct: 85 KLILYTDGSSRGNPGPAGAGAVVETPDETVLC--RVGRPVGSRTGNNTAEYAALHLGLAC 142
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
VL S + T ++ T + E H
Sbjct: 143 -VLTRYGVSPLEIRIDSMTVIGDIWQDATREEFTDYRRVINTLLDEFPDHHW-------T 194
Query: 128 HAGNQENEKVDRIARNAAV 146
H + E D +A +A
Sbjct: 195 HVVDAERNPADALATVSAD 213
>gi|224047378|ref|XP_002196183.1| PREDICTED: similar to Gag-Pol polyprotein [Taeniopygia guttata]
Length = 1318
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I S T+ + + A+ L ++
Sbjct: 774 FTDGSSYVISGKRHAGYAV---TTSREVIESRPLSANTSAQKAEIIALTRALELAKGREI 830
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ ++A KV + IK H
Sbjct: 831 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHSQEILRLLDAVQLPEKVAIMHIKAH 890
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++AA
Sbjct: 891 QKVSSELEEGNMLADREAKDAAK 913
>gi|242814698|ref|XP_002486420.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714759|gb|EED14182.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 874
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A+K +
Sbjct: 547 WSDGS-RLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALKWALERQP 605
Query: 66 PCKVLLYTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + D+ ++ + + V +
Sbjct: 606 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQ 654
Query: 124 WIKGHAGNQENEKVDRIARNAAVS 147
W+ GH+G + NE+ D+ A+ AA
Sbjct: 655 WVPGHSGIEGNEQADQAAKRAASK 678
>gi|300811083|gb|ADK35816.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEVVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|50365292|ref|YP_053717.1| ribonuclease HI [Mesoplasma florum L1]
gi|50363848|gb|AAT75833.1| ribonuclease HI [Mesoplasma florum L1]
Length = 206
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 21/154 (13%)
Query: 3 SKHLREVHA-------YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKE-----TTNNR 50
SK +++ Y+DG+ + +G ++ ++ KE S ++ N
Sbjct: 53 SKPKQKIEIEENAAVAYSDGSFIKDNNTYSYGAVVMWQNKEFHFSKRYRDDELKSMWNVS 112
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
EL A + + LY Y + K+ + +
Sbjct: 113 GELQGAKRVMLFAYANNIKKLYLYHDYEGIAKWANHEW---------KAKSDEGNEYIKF 163
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + +++ W+KGH+ + N+ D++A NA
Sbjct: 164 VDQIRTKVELEFIWVKGHSNDYYNDLADQLAANA 197
>gi|242765569|ref|XP_002341001.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724197|gb|EED23614.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 805
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
++DG+ + G G G + E + G + M + A++ + + +
Sbjct: 489 WSDGS-RLDTGRAGAG-----EHVEVPMGHGHEVFDAELMGVATALEWALERQPLGPIWV 542
Query: 72 YTDSSYVHKG--FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ D+ ++ + + V + W+ GH+
Sbjct: 543 FLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQWVPGHS 591
Query: 130 GNQENEKVDRIARNAAVS 147
G + NE+ D+ A+ AA
Sbjct: 592 GIEGNEQADQAAKRAASK 609
>gi|126178291|ref|YP_001046256.1| ribonuclease H [Methanoculleus marisnigri JR1]
gi|125861085|gb|ABN56274.1| ribonuclease H [Methanoculleus marisnigri JR1]
Length = 142
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 15/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALKY 65
V YTDGA GNPG W V++R SG TNN E A I L
Sbjct: 7 VTLYTDGASRGNPGDAAWAYVIVRDGSVVAGRSGYIGTATNNVAEYHAVINGLDAAREFT 66
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + +DS V + + + K +V +
Sbjct: 67 GGRLEVRSDSELVVRQLTGRYRI----------TKEHLAGLAEEVRRRMRHFAEVRFESV 116
Query: 126 KGHAGNQENEKVDRIARN 143
+ + DR+
Sbjct: 117 P--REHPCIQVADRLCNE 132
>gi|83319587|ref|YP_424304.1| ribonuclease H1, putative [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|83283473|gb|ABC01405.1| ribonuclease H1, putative [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 206
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALTALKYP- 66
AYTDG+ +GV++ +K +E +S ++ N R I + +
Sbjct: 67 IAYTDGSYDTLNNTFSYGVVVFWKNREFHLSQRFNDSQLANLRNVAGEIIAVKQTIMFCL 126
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
KV++ D V K + +W+ N T + K N + Q V+
Sbjct: 127 ANKISKVIICHDYQGVSKWA---LNQWKANLDFTKEYKDFFN--------KYKDQISVEF 175
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSF 148
WIK H N+ N+ D++A+ A + F
Sbjct: 176 KWIKSHTNNKYNDLADKLAKQATLEF 201
>gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H [Arabidopsis thaliana]
Length = 290
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 18/146 (12%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALT 61
+ DGA GNPG G G +LR + E TNN E A + L
Sbjct: 146 RQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLR 205
Query: 62 A--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ K V + DS V Q WKT+ K + + + +
Sbjct: 206 SALDKGFKNVHVLGDSMLVCMQV--------QGAWKTNHPKMAELCKQAKELMNSFKTFD 257
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
+ H ++N + D+ A +A
Sbjct: 258 IK------HIAREKNSEADKQANSAI 277
>gi|30678332|ref|NP_186790.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|145331720|ref|NP_001078087.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640141|gb|AEE73662.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640142|gb|AEE73663.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 294
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 18/146 (12%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALT 61
+ DGA GNPG G G +LR + E TNN E A + L
Sbjct: 150 RQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLR 209
Query: 62 A--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ K V + DS V Q WKT+ K + + + +
Sbjct: 210 SALDKGFKNVHVLGDSMLVCMQV--------QGAWKTNHPKMAELCKQAKELMNSFKTFD 261
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
+ H ++N + D+ A +A
Sbjct: 262 IK------HIAREKNSEADKQANSAI 281
>gi|34146846|gb|AAQ62431.1| At3g01410 [Arabidopsis thaliana]
gi|51970934|dbj|BAD44159.1| putative RNase H [Arabidopsis thaliana]
Length = 294
Score = 57.2 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 18/146 (12%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALT 61
+ DGA GNPG G G +LR + E TNN E A + L
Sbjct: 150 RQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLR 209
Query: 62 A--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ K V + DS V Q WKT+ K + + + +
Sbjct: 210 SALDKGFKNVHVLGDSMLVCMQV--------QGAWKTNHPKMAELCKQAKELMNSFKTFD 261
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
+ H ++N + D+ A +A
Sbjct: 262 IK------HIAREKNSEADKQANSAI 281
>gi|157953681|ref|YP_001498572.1| hypothetical protein AR158_C491R [Paramecium bursaria Chlorella
virus AR158]
gi|156068329|gb|ABU44036.1| hypothetical protein AR158_C491R [Paramecium bursaria Chlorella
virus AR158]
Length = 195
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 8/139 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTD + GG G + S G + R +
Sbjct: 31 IVYTDASIR--QKKGGIGFC------SRTSSDGYEHWDTFRASVNEIKDINRNELGAIFA 82
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + N + S + + + + + V + +K H+
Sbjct: 83 SIYISDIHSDIIIYSDSLTSIDNIVRRSKRNKYDKLSSFTLQLANERKGNVYISKVKAHS 142
Query: 130 GNQENEKVDRIARNAAVSF 148
GN N D++A++ + S
Sbjct: 143 GNIGNTYADKLAKDGSNSA 161
>gi|28211765|ref|NP_782709.1| ribonuclease HI [Clostridium tetani E88]
gi|28204207|gb|AAO36646.1| ribonuclease HI [Clostridium tetani E88]
Length = 206
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AY DG+ +GV++ Y G E+ + EK + + + + + K +
Sbjct: 71 VAYVDGSYENTKKQYSYGVVMFYNGCEEHFA--EKFSNPDMVSMRNVAGEIEGAKRAMQF 128
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + + + G + K + + EA ++ +KGH+
Sbjct: 129 CIDKGIKSLDIIYDYEGIEKWCTGVWQA--KKTGTQAYKLYYDEAIKLVDINFIKVKGHS 186
Query: 130 GNQENEKVDRIARNA 144
G++ N+ D +A+ A
Sbjct: 187 GDKYNDLADSLAKGA 201
>gi|67524507|ref|XP_660315.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|40743929|gb|EAA63113.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|259486378|tpe|CBF84167.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 666
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ Y+DG+ +G G+ + K T E+M A++ L A
Sbjct: 362 QISVYSDGSRTGQGAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAALGQP 421
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-------TVKNIDLWMKFVEASAQHKV 120
V T V + + T + + L + + +
Sbjct: 422 CVGYST--QLVILLDNLAAASLLASYRPTPHRHGLSESFGQLATQWLEAPSILTRPRKPL 479
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ WI GH+G NE D++A+ + + I
Sbjct: 480 QVRWIPGHSGIAGNELADKLAKLGSSIYSPNI 511
>gi|55979254|gb|AAV68488.1| gag-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ S G G V E I + T+ + + A+ + K+
Sbjct: 1175 YTDGSSSLQGGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + A ++ + GH
Sbjct: 1232 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKSEILALLNALFLPKRLSIIHCPGH 1291
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR AA+
Sbjct: 1292 QKGNSAEARGNRMADQAAREAAM 1314
>gi|224164744|ref|XP_002197569.1| PREDICTED: similar to polyprotein [Taeniopygia guttata]
Length = 1248
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I SG T+ + + + L ++
Sbjct: 809 FTDGSSYVISGKRHAGYAV---TTSREVIESGPLSANTSAQKAEIITLTRALELAKGREI 865
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ ++A KV + IK H
Sbjct: 866 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHSQEILRLLDAVQLPEKVAIMHIKAH 925
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++AA
Sbjct: 926 QKVSSELEEGNMLADREAKDAAK 948
>gi|317149136|ref|XP_001823167.2| ribonuclease H1 [Aspergillus oryzae RIB40]
Length = 173
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAI----- 57
YTDG C N G V+ + + + TN R E+ A I
Sbjct: 6 EIYTDGGCRRNGRSDAIGAAAVVFKNRFGKCTGWTRSLPRYPPPTNQRAEITAIIFALEK 65
Query: 58 ----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK--- 110
+V +Y+DS Y ++WI KW NGW + V N DL +
Sbjct: 66 ALDKFERLDTNPYLEVKIYSDSRYAIGCMTKWIYKWANNGWTNAAGNEVANRDLIEEASA 125
Query: 111 -FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ V+ WI +EN++ D + +
Sbjct: 126 LDDRLKEEGDVEYIWIP----REENQRADEMCNDDMD 158
>gi|242786282|ref|XP_002480775.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720922|gb|EED20341.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 882
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + M + A++ +
Sbjct: 555 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQP 613
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + + A V + W+
Sbjct: 614 LGPIWVLLDAQNAIDRLKSTRP---------APGQALVLRAHRAVEKLAMRGQPVTIQWV 664
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 665 PGHSGVVGNEQADQAAKRAASK 686
>gi|1166378|gb|AAA85636.1| reverse transcriptase, RNaseH [Colletotrichum gloeosporioides]
Length = 1096
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 19/139 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAA---IKALTALKY 65
Y+DG+ + N G G+G ++ + G E A ++
Sbjct: 877 IVYSDGSKAPN-GATGFGFVIYRGSRRIAQGCGRLGIAEVFDGEAEGARAGLRRALLTSQ 935
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D++ V +G + +++ + + + +W
Sbjct: 936 GQPIHICIDNTSVIQGI--------------RSNIPDSSQAAFLEIQAVARIYNIQTHWS 981
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G + NE+ D +A+
Sbjct: 982 PGHQGIKGNEEADILAKEG 1000
>gi|7493944|pir||S72620 probable reverse transcriptase - anthracnose fungus (Colletotrichum
gloeosporioides) retrotransposon CgT1 (fragment)
Length = 1206
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 19/139 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAA---IKALTALKY 65
Y+DG+ + N G G+G ++ + G E A ++
Sbjct: 987 IVYSDGSKAPN-GATGFGFVIYRGSRRIAQGCGRLGIAEVFDGEAEGARAGLRRALLTSQ 1045
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D++ V +G + +++ + + + +W
Sbjct: 1046 GQPIHICIDNTSVIQGI--------------RSNIPDSSQAAFLEIQAVARIYNIQTHWS 1091
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G + NE+ D +A+
Sbjct: 1092 PGHQGIKGNEEADILAKEG 1110
>gi|295321673|pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tube As A Fusion Protein With Maltose Binding Protein
gi|295321675|pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tube As A Fusion Protein With Maltose Binding Protein
Length = 141
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 15/138 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALK 64
+V DG GNPGP G+G ++ TNN E I L
Sbjct: 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAV 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Q +G + + + + + S +++ W
Sbjct: 63 KLGATEA-------AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA-SQFRRINYEW 114
Query: 125 IKGHAGNQENEKVDRIAR 142
+ N DR+A
Sbjct: 115 VP----RARNTYADRLAN 128
>gi|331232154|ref|XP_003328739.1| hypothetical protein PGTG_10040 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307729|gb|EFP84320.1| hypothetical protein PGTG_10040 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 407
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 5/145 (3%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R YTDG+ + G G V G + +N+ E + I L
Sbjct: 131 RHFLIYTDGSYDKDKGGAGAAVCPSLDLAVSSALGVDPLISNHECETVGLI-LAFELLKI 189
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ S Y+ I++ + G + I ++F + + L W
Sbjct: 190 ALLSSNFTSVYILTDNKGVIQRTKNFGVPKPGQYLFFEILHLLEFTQRDI--DLFLVWCP 247
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
GH G NE D +A AA + +NK
Sbjct: 248 GHKGITGNEIADNLA--AATTSRNK 270
>gi|156041060|ref|XP_001587516.1| hypothetical protein SS1G_11509 [Sclerotinia sclerotiorum 1980]
gi|154695892|gb|EDN95630.1| hypothetical protein SS1G_11509 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 717
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 8/143 (5%)
Query: 5 HLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ ++DG+ G+G + G + + + ++ + A
Sbjct: 356 PPEDYSIFSDGSEQTIDRKHHVGYGYAIYRNGTQIATGYKQIHSDSHVFDAEAIGAWRGL 415
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + S + + + K +A Q + +
Sbjct: 416 EHLISTLAGPPNGRIWMCIDSTSVIWG------MRGDAPPTSQWAFHKCHKAIRQLNIRV 469
Query: 123 YWIKGHAGNQENEKVDRIARNAA 145
W GH + NE+ DR+A A
Sbjct: 470 KWSPGHMEIEGNEEADRLANAGA 492
>gi|256395024|ref|YP_003116588.1| bifunctional RNase H/acid phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361250|gb|ACU74747.1| Phosphoglycerate mutase [Catenulispora acidiphila DSM 44928]
Length = 427
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 20/142 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI---KAL 60
R DGA GNPGP +G L+ ++ G TNN E I +A
Sbjct: 3 RTFIVEADGASRGNPGPASYGALVADAATGEVLAELAEGLGVVTNNVAEYRGLIAGLRAA 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
AL +V + DS + S + V
Sbjct: 63 YALDPHAEVEVRMDSKLAVQQMSGVWQVK----------HPDIKQLAVQARTAFPQAGAV 112
Query: 121 DLYWIKGHAGNQENEKVDRIAR 142
W+ EN++ D +A
Sbjct: 113 RYTWVP----RAENKRADALAN 130
>gi|154277654|ref|XP_001539665.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413250|gb|EDN08633.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1489
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 10/126 (7%)
Query: 26 WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA----LTALKYPCKVLLYTDSSYVHKG 81
+G ++ K+ ++ + A T PC ++
Sbjct: 1197 YGFIVYQGHKQLASFSAALSPMSHVFDAEAVGACRALECTVKLLPCVTEDGSNPQIWLCL 1256
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + S + + E QH V L W GH G + NE+ DR+A
Sbjct: 1257 DNTSVIWGIRGSAAASSN------WAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLA 1310
Query: 142 RNAAVS 147
+ A S
Sbjct: 1311 KQAVSS 1316
>gi|167767137|ref|ZP_02439190.1| hypothetical protein CLOSS21_01656 [Clostridium sp. SS2/1]
gi|167711112|gb|EDS21691.1| hypothetical protein CLOSS21_01656 [Clostridium sp. SS2/1]
gi|291559536|emb|CBL38336.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[butyrate-producing bacterium SSC/2]
Length = 214
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 18/145 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------ELMAAIKA 59
+ AY DG+ + +G++L + G E+ + + M + A
Sbjct: 61 DTLVAYVDGSYDHSQKRFSYGMVLMHDGVERYFAYPYADKELVTMRNVAGEIKGSEAAMR 120
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + K + ++ + E +
Sbjct: 121 FAKENGYKKLAIHYDYEGIQKWCTGEWAAKKEGTQ-----------AYQRIYEEMKQYVQ 169
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ +KGH+ ++ N+ D +A++A
Sbjct: 170 IKFVKVKGHSNDKYNDYADMLAKSA 194
>gi|154151098|ref|YP_001404716.1| ribonuclease H [Candidatus Methanoregula boonei 6A8]
gi|153999650|gb|ABS56073.1| ribonuclease H [Methanoregula boonei 6A8]
Length = 154
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 15/140 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDGA GNPG +G + + + TNN E A + AL
Sbjct: 20 TLTVYTDGASRGNPGLAAYGFIFVRNNEIIFEEARTIGTATNNTAEYYAILSALKKATEF 79
Query: 67 C--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+L+Y+DS V K + + + + + + + + + + +
Sbjct: 80 ASESILVYSDSELVIKQINNQYRITKPHLAQLRAELALLEKNFTDLHFRNVPRENIFIR- 138
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ D + A
Sbjct: 139 -----------RCDELCNRA 147
>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1618
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 10/143 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTAL 63
+ ++D + N G + + + S G + + ELMA A+ +
Sbjct: 1290 ITVFSDASGKENQ--LGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIYYAIGLV 1347
Query: 64 KYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ TD+ + + + +
Sbjct: 1348 FQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPL 1407
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
L W+ GH GN NE DR+A+
Sbjct: 1408 RLQWVPGHCGNPGNEAADRLAKA 1430
>gi|308465025|ref|XP_003094775.1| hypothetical protein CRE_19457 [Caenorhabditis remanei]
gi|308246945|gb|EFO90897.1| hypothetical protein CRE_19457 [Caenorhabditis remanei]
Length = 161
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 16/160 (10%)
Query: 4 KHLREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ + DGAC G+GV + + + NNR EL A +AL
Sbjct: 2 SNSKHAVINIDGACINQGLSNAKAGYGVHWGENHQNNLSGRVVGDQDNNRGELTGANQAL 61
Query: 61 TALKYPCKVLLYT-------------DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
+ + + + + S +++
Sbjct: 62 KQVNTTYYPIDFHLESVKPQAASQGYTHVTLRSDSTYVRDAIAGASGFQSASPANRDLMQ 121
Query: 108 WMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + GH+G+ N+ R+A A
Sbjct: 122 SIHDLSKGGRMTVHYEHVSGHSGDAGNDAAHRLATEGAKK 161
>gi|302668741|ref|YP_003832566.1| ribonuclease H [Butyrivibrio proteoclasticus B316]
gi|302397081|gb|ADL35984.1| ribonuclease H [Butyrivibrio proteoclasticus B316]
Length = 219
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKII----SGGEKETTNNRMELMAAIKALTALKYP 66
A+ DG+ + G G L +KGK +I SG E N E++ A KA+
Sbjct: 67 AFVDGSYNPETKVYGCGGYLFFKGKYYLIQGSGSGPEASMRNVAGEILGACKAIATAASL 126
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
L Y W+ N T K + A ++ K
Sbjct: 127 KIDGLKLYYDYAGIENW-VTGVWKCNNEWTRKYKEYVRKYI-------DAGLEITFVHTK 178
Query: 127 GHAGNQENEKVDRIAR 142
GH+G NE VDR+A+
Sbjct: 179 GHSGIAGNELVDRLAK 194
>gi|313665218|ref|YP_004047089.1| ribonuclease HI [Mycoplasma leachii PG50]
gi|312949722|gb|ADR24318.1| ribonuclease HI [Mycoplasma leachii PG50]
Length = 206
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE-----KETTNNRMELMAAIKALTALK 64
AYTDG+ +GV++ K +E +S N E+MA + +
Sbjct: 67 IAYTDGSYDTLNNTFSYGVVVFLKNREFHLSQRFNDSNLANLRNVAGEIMAVKQTIMFCI 126
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ Y + +W+ N T + K N + Q V+ W
Sbjct: 127 ANKISKVIIYHDYQGVSKW-ALNQWKANLDFTKEYKDFFN--------KYKDQISVEFKW 177
Query: 125 IKGHAGNQENEKVDRIARNAAVSF 148
IK H N+ N+ D++A+ A + F
Sbjct: 178 IKSHTNNKYNDLADKLAKQATLEF 201
>gi|326332819|ref|ZP_08199077.1| FtsQ [Nocardioidaceae bacterium Broad-1]
gi|325949377|gb|EGD41459.1| FtsQ [Nocardioidaceae bacterium Broad-1]
Length = 290
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 7/145 (4%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKAL 60
L + TDG+ G GWG L + + + + + AI
Sbjct: 110 PLPPLVVATDGSAHR--GFIGWGWLAGDGQHGFGRQVPNARIRDPQSLVVLAELQAIAEA 167
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHK 119
+ + TDS W++ + + + L + +
Sbjct: 168 VRALPRRTLTIRTDSRVALALIEDWLRGEESMPKGYETEHRAELAGLTRMHDDLCRESER 227
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ W++GH G NE D +A+ A
Sbjct: 228 LSFEWVRGHVGEALNEGADSLAKLA 252
>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 696
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 8/148 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAIKALTALK 64
+ Y+D + G V L + G + + EL+ A++ +
Sbjct: 384 IVVYSDASGRE-GHLGAAAVALGNDLQVIESQQVQVGPMDRWSVHVAELIGIFYAVSTVF 442
Query: 65 YPCKVLLYTDSS---YVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
T+ + + + + L + +
Sbjct: 443 KISHQRPRTEHNRTTTATILCDSKSALQAIENPGNKSGQRIIHAILQAAAEVQAKGIALR 502
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
L WI GH + N+ DR+A++AA K
Sbjct: 503 LQWIPGHCDDPGNDAADRLAKDAASPGK 530
>gi|227503210|ref|ZP_03933259.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
gi|227076271|gb|EEI14234.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
Length = 398
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKALT 61
++ V Y DG GNPG G G ++ E ++ K+ +NN E ++ L
Sbjct: 1 MK-VIIYADGGSRGNPGIAGSGTVVYAADGETVLREIVYVVGKKASNNVAEYHGLLRGLE 59
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V Y DS V + + K +
Sbjct: 60 AAVELGADDVDFYMDSRLVVEQMNGRW----------KIKHPDMKQLGVQAQKLMQQLGR 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
V+L W++ +N+ D ++
Sbjct: 110 VNLSWVR----RNDNKVADALSNE 129
>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 832
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 12/145 (8%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTALKY 65
+TD A N G VL+ G EK T EL+A L +
Sbjct: 521 VFTD-AAKENS-VLGAAVLIMDNSYRIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWR 578
Query: 66 PC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +Y S + N K + V+NI K +++ +
Sbjct: 579 SHSSEGTPPPHQHHTYTILSDSHTALRAIANSSKQVGGQIVQNILRTTKQLKSIGI-DLC 637
Query: 122 LYWIKGHAGNQENEKVDRIARNAAV 146
L W+ GH+G + NE D++A+ +
Sbjct: 638 LQWVPGHSGIRGNEMADQLAKQSIN 662
>gi|145349572|ref|XP_001419204.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579435|gb|ABO97497.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 126
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 20/139 (14%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALTALKYPC 67
DGA GNPG G G LLR K ++ G E+ +
Sbjct: 2 DGASRGNPGEAGAGALLRRKRDDRIVEELLEYLGNERTVNEAEYAALCLGLRKAVELGIT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K+ + D S+ I + +K + E + K+
Sbjct: 62 KIEVRGD--------SKLIVNQVEGSFKLKSANLKSMHAEACELKEKFTEFKI------S 107
Query: 128 HAGNQENEKVDRIARNAAV 146
H + N+ D +A A
Sbjct: 108 HVKREFNKHADHLANMAVD 126
>gi|242763350|ref|XP_002340558.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218723754|gb|EED23171.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 133
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 27 GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI 86
G L ++ + G + L +++ P + +YTD+ + Q
Sbjct: 2 GAALTMGLGQRELEGID-------TALEILLRSQPCDDNPYEATIYTDNQAAIRATCQPG 54
Query: 87 KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + + + ++ +V L W+ GH G NEK D++A+ AAV
Sbjct: 55 RSS-------GQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAAV 107
Query: 147 SFKNK 151
+
Sbjct: 108 KATRR 112
>gi|150021551|ref|YP_001306905.1| ribonuclease H [Thermosipho melanesiensis BI429]
gi|149794072|gb|ABR31520.1| ribonuclease H [Thermosipho melanesiensis BI429]
Length = 145
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 12/141 (8%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKALTALKYPC 67
Y DG+ G+ + + KE K + K + EL+A I AL +
Sbjct: 3 IYVDGSYYQELSIAGYAFCIVDEDKEIFTKSGAIILKNANSVVAELVAVINALRYCERNN 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ Y K K + + V +K
Sbjct: 63 ITNVTIVHDYNEIP---------MFATAYRKTKNRKINSYIYELKRLYNKLDVSFKKVKA 113
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H ++ N VD+++R + F
Sbjct: 114 HKNDEFNNLVDKLSRESVEKF 134
>gi|299143280|ref|ZP_07036360.1| putative ribonuclease H1 [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517765|gb|EFI41504.1| putative ribonuclease H1 [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 197
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL----RYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
E+ +Y DG+ S G +G +L Y+ K + N EL A+ A+
Sbjct: 65 EIISYVDGSYSVIDGSFSYGAVLFDNDIYETSSKRYYDEDSTMRNVAGELKGAMYAIQRA 124
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K +Y Y + +T I+ + + V
Sbjct: 125 VELGKKRIYLHYDYA---------GIENWATETWKANKKGTIEYRNYYKSIKDKIDVVFI 175
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+ H+G + NE VD++A+ A
Sbjct: 176 KVAAHSGVKYNEIVDKLAKEA 196
>gi|169349844|ref|ZP_02866782.1| hypothetical protein CLOSPI_00582 [Clostridium spiroforme DSM 1552]
gi|169293412|gb|EDS75545.1| hypothetical protein CLOSPI_00582 [Clostridium spiroforme DSM 1552]
Length = 199
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 3/136 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G+G ++ + G+ N A + L C
Sbjct: 62 LIAYVDGSYNVKTKEYGFGCVIIEGQQVIKEMYGKGNDENYVSMRNVAGEIL---GSICA 118
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + Y + ++ T + K + ++ + H
Sbjct: 119 MEYANSNGYKQICIYYDYEGIEKWANATWKANKKGTQEYQKKVSKYRENLEIIFVKVLAH 178
Query: 129 AGNQENEKVDRIARNA 144
+G+ NEK D +A+ A
Sbjct: 179 SGDFYNEKADMLAKKA 194
>gi|15895131|ref|NP_348480.1| ribonuclease HI [Clostridium acetobutylicum ATCC 824]
gi|15024833|gb|AAK79820.1|AE007694_6 Ribonuclease HI [Clostridium acetobutylicum ATCC 824]
gi|325509270|gb|ADZ20906.1| Ribonuclease HI [Clostridium acetobutylicum EA 2018]
Length = 245
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 7/141 (4%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ L Y+DG+ + G+G ++ G+ I +
Sbjct: 2 RRLDNFKIYSDGSYLDD--KVGYGAVILKNGE--CIKKIYGRVCETYATGSRQVGGEIKA 57
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++ + + + + + K + ++
Sbjct: 58 VEHALTWCDENNIHSVTVYYDFENIEKWAKGDYTANKPLTQEFKE---FIEKCTIDINWV 114
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+K H G + N+ D +A+
Sbjct: 115 KVKSHTGIKWNDAADVLAKKG 135
>gi|67524407|ref|XP_660265.1| hypothetical protein AN2661.2 [Aspergillus nidulans FGSC A4]
gi|40743879|gb|EAA63063.1| hypothetical protein AN2661.2 [Aspergillus nidulans FGSC A4]
gi|259486429|tpe|CBF84258.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1538
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ +G G+ + K T E+M A++ L A
Sbjct: 1235 ISVYSDGSRTGQGAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAALGQPC 1294
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-------TVKNIDLWMKFVEASAQHKVD 121
V T V + + T + + L + + +
Sbjct: 1295 VGYST--QLVILLDNLAAASLLASYRPTPHRHGLSESFGQLATQWLEAPSILTRPRKPLQ 1352
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ WI GH+G NE D++A+ + + I
Sbjct: 1353 VRWIPGHSGIAGNELADKLAKLGSSIYSPNI 1383
>gi|241889130|ref|ZP_04776434.1| ribonuclease HI [Gemella haemolysans ATCC 10379]
gi|241864379|gb|EER68757.1| ribonuclease HI [Gemella haemolysans ATCC 10379]
Length = 202
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG----GEKETTNNRMELMAA--- 56
+ + V+AY DG+ G G GV++ K+ + +N + A
Sbjct: 58 ETVDGVYAYIDGSFDRVQGIYGSGVVIVDGDKKYEFKHAGNREDYAQLHNVAGELEAAKY 117
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ + ++ L+ D + + + + + FV+
Sbjct: 118 VMWYAVDRKIKEITLFYDYQGIESWATGDWQANLPYTQDYVKFYNKVKSVVKVNFVKVK- 176
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
H G + NE VD++A++A FK +
Sbjct: 177 ----------AHTGVELNEVVDKLAKDAIAEFKKE 201
>gi|313892775|ref|ZP_07826356.1| conserved domain protein [Veillonella sp. oral taxon 158 str.
F0412]
gi|313442706|gb|EFR61117.1| conserved domain protein [Veillonella sp. oral taxon 158 str.
F0412]
Length = 463
Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGV--LLRYKGKEKII----SGGEKETTNNRMELMAAIKALTA 62
+ A+TDG+ + +GV +L + I + ++ N E++ I AL
Sbjct: 65 LVAFTDGSFDKDLKRYSYGVQFILPDGDQSDICGYGSNPEYIDSNNIIGEILGVINALDW 124
Query: 63 --LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
K+ +Y D + K + + V + L + + +V
Sbjct: 125 AVSNNFEKIKIYHDYEGLAKWITGEWE----------ANSKVGKMYLALFNAKFKDVLEV 174
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ GH+ NEK D++A+ AA+ K ++
Sbjct: 175 IFVKVPGHSNVVYNEKADQLAK-AALVDKKRV 205
>gi|6723273|dbj|BAA89659.1| gag-pol precursor polyprotein [Baboon endogenous virus strain M7]
Length = 1727
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 1179 YTDGSSYLDSGTRRAGAAVV---DGHNTIWAQSLPPGTSAQKAELIALTKALELSKGKKA 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A +V + GH
Sbjct: 1236 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPQEVAIIHCPGH 1295
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + DR+AR AA++
Sbjct: 1296 QKGQDPVAVGNRQADRVARQAAMA 1319
>gi|130585|sp|P10272|POL_BAEVM RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
Length = 1189
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 641 YTDGSSYLDSGTRRAGAAVV---DGHNTIWAQSLPPGTSAQKAELIALTKALELSKGKKA 697
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A +V + GH
Sbjct: 698 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPQEVAIIHCPGH 757
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + DR+AR AA++
Sbjct: 758 QKGQDPVAVGNRQADRVARQAAMA 781
>gi|325848957|ref|ZP_08170467.1| ribonuclease HI [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480601|gb|EGC83663.1| ribonuclease HI [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 195
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 13/141 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKALTA 62
V AY DG+ S G G++ K + I N E+ A++ A+
Sbjct: 58 DSVIAYIDGSYSKKDKKYGVGIVYITDEKIEEIYEDFDDEFHIHRNVAGEVKASVGAINK 117
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +Y Y + N + F +A + V
Sbjct: 118 AISDGKKTIYIHFDYQGIESWARGTWKRNNDLTK---------RYYEFFQKAKEKIDVHF 168
Query: 123 YWIKGHAGNQENEKVDRIARN 143
+K H+ ++ N+ D +A+
Sbjct: 169 IKVKAHSNDKYNDMADALAKK 189
>gi|169824092|ref|YP_001691703.1| ribonuclease H-like protein [Finegoldia magna ATCC 29328]
gi|167830897|dbj|BAG07813.1| ribonuclease H-related protein [Finegoldia magna ATCC 29328]
Length = 202
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK--ETTNNRMELMAAIKALTALK 64
E AY DG+ + G +G +L + GK + E + +R ++ A+K
Sbjct: 64 NECVAYVDGSFKKDTGEYSFGCVLFHNGKIDKFNKKYPQSEYSTHRNVSGEVSGSVFAIK 123
Query: 65 Y-----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
K+ ++ D + + + E ++
Sbjct: 124 KAVELKMNKITIFYDYQGIESWANGDW-----------KTNNNLTRNYKKFIDEIKSKID 172
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
++ +KGH+ + N+ D +A+ A
Sbjct: 173 INFVKVKGHSNDTYNDMADELAKQA 197
>gi|324536660|gb|ADY49474.1| Ribonuclease H1 [Ascaris suum]
Length = 104
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ ++++ TDS+ + K + WIK W++NGWKT++ VKN DL ++ + + KV
Sbjct: 16 CERNFSRLIICTDSNLLIKSMNSWIKTWRKNGWKTANGGDVKNKDLIVELDKLLEKVKVH 75
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ GHAG NEK D +ARN A+ +
Sbjct: 76 FKHVAGHAGIYGNEKADELARNGALRY 102
>gi|71416415|ref|XP_810240.1| ribonuclease H1 [Trypanosoma cruzi strain CL Brener]
gi|70874743|gb|EAN88389.1| ribonuclease H1, putative [Trypanosoma cruzi]
Length = 323
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 67/180 (37%), Gaps = 43/180 (23%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS----------GGEKETTNNRMELMAAIK 58
V Y DGAC N G L R + ++ TNNR EL A I
Sbjct: 143 VEVYVDGACRANGK----GKLSRGGYGGYYGANDTRNFSLPIPVDEPQTNNRAELYAVIY 198
Query: 59 ALTAL---KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
L + + +++DS Y +G ++ KW QNG+ S+ TV N DLW
Sbjct: 199 VLRTALEAESCYNLRVFSDSMYTIRGADFYMHKWLQNGFCGSNGSTVLNCDLWKPLNTMR 258
Query: 116 AQHK--------------------------VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
QH + L ++GHAG NE D +A A++ +
Sbjct: 259 LQHATRYGEWLVSQFGLLPVVASTLAKKLALQLVHVRGHAGVCGNEMADHLAVMGALNGR 318
>gi|162568710|gb|ABY19378.1| reverse transcriptase [Paracoccidioides brasiliensis]
Length = 553
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPG-GWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIK 58
+ ++ ++ +TDG+ +P G G + + + ++IS G + A
Sbjct: 194 LQQRNPLDLVVFTDGSQIEHPQRATGAGWAICWGSEHRLISTGNLPMDKAEVFDAEAMAA 253
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFV 112
+ S+ + + + + TS ++ +
Sbjct: 254 LQGLKEATTSPQAKFASNVYICLDNLEVARALGSVPNTSSQQVFAQFLKAIKAWQSRDRL 313
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVD 138
+ Q +V + W+ GHAG NEK D
Sbjct: 314 PLATQSRVVIRWVPGHAGVAGNEKAD 339
>gi|170100332|ref|XP_001881384.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644063|gb|EDR08314.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 207
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 18/155 (11%)
Query: 7 REVHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNN-------RMELMAA 56
+ +TDGA N PG G GV+ + + E + ++ + AA
Sbjct: 36 DRILIFTDGAAPNNGRPGVRAGCGVVTGPSLDSRHLFRLEPDVSHQLTSNRAELRAVEAA 95
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK---TSDKKTVKNIDLWMKFVE 113
I+ ++ +++ TDS YV +G + WI+ W+ + + + + +
Sbjct: 96 IEFDWKMEGIKTIVIATDSEYVAEGATLWIRVWRDWSGRWVVQKANMDLWDRLMKAIEDK 155
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+V+ Y I N DR A+ AA
Sbjct: 156 EREGIRVEFYLI----DRVWN-LADRYAKAAAKRL 185
>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
Length = 1288
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 10/143 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTAL 63
+ ++D + N G + + + S G + + ELMA A+ +
Sbjct: 960 ITVFSDASGKENQ--LGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIYYAIGLV 1017
Query: 64 KYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ TD+ + + + +
Sbjct: 1018 FQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPL 1077
Query: 121 DLYWIKGHAGNQENEKVDRIARN 143
L W+ GH GN NE DR+A+
Sbjct: 1078 RLQWVPGHCGNPGNEAADRLAKA 1100
>gi|242826474|ref|XP_002488649.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712467|gb|EED11893.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1747
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + + + + A A
Sbjct: 1447 DIIIFSDGSRLDNGHAGG-GYVGFQANHQFLCASISYGSGKEVFDAEAEAALAGAQAAIS 1505
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S + ++ + + + V
Sbjct: 1506 YPTARFATNLWICLDNLEVATRLLSPSTGSSQGVFESFRTLAAAWPLRERLPHTKSGSVR 1565
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA NE D A+ A S
Sbjct: 1566 IRWVPGHAKIPGNEAADLAAKKGAAS 1591
>gi|330948798|gb|EGH49058.1| ribonuclease H [Pseudomonas syringae pv. pisi str. 1704B]
Length = 54
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 101 TVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
VKN DLW E ++H V W++GH G+ NE+ D++A +
Sbjct: 1 PVKNADLWQLLDEQVSRHTVKWQWVRGHIGHPGNERADQLANRGVDEVR 49
>gi|329769530|ref|ZP_08260940.1| hypothetical protein HMPREF0433_00704 [Gemella sanguinis M325]
gi|328838745|gb|EGF88343.1| hypothetical protein HMPREF0433_00704 [Gemella sanguinis M325]
Length = 207
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 18/149 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-------EKETTNNRMELMAAIKALT 61
V+AY DG+ G GV++ + E +E +
Sbjct: 63 VYAYIDGSFDRAYKIYGSGVVIVDGENKYQFKHAGNKEEYAELHNVAGEIEAAKFVMWYA 122
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K ++ ++ D + + D +ASA+ K++
Sbjct: 123 VDKKIPEITIFYDYEGIESWVTGEW-----------KANLNYTKDYVEFARKASAKVKLN 171
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+K H G + NE VD +A+ A FK
Sbjct: 172 FIKVKAHTGVELNELVDSLAKEAIEEFKE 200
>gi|296393054|ref|YP_003657938.1| phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
gi|296180201|gb|ADG97107.1| Phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
Length = 378
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 18/138 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALK 64
+R V DG GNPGP +G ++ + + TNN E I L A K
Sbjct: 1 MR-VVIEADGGSRGNPGPAAFGAVVLDGDRVLAQRAEQIGHATNNVAEYRGLIAGLEAAK 59
Query: 65 Y--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+VL+ DS V + S K + A V
Sbjct: 60 ELGASEVLVRMDSKLVVEQMSGRW----------KVKHEGMRELASRAAALSRAFDAVRY 109
Query: 123 YWIKGHAGNQENEKVDRI 140
W+ ++N++ D +
Sbjct: 110 TWVP----REQNKRADAL 123
>gi|242816035|ref|XP_002486689.1| ribonuclease H1, putative [Talaromyces stipitatus ATCC 10500]
gi|218715028|gb|EED14451.1| ribonuclease H1, putative [Talaromyces stipitatus ATCC 10500]
Length = 346
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 57/175 (32%), Gaps = 38/175 (21%)
Query: 11 AYTDGACSGNPG---PGGWGVLLR-------------------------------YKGKE 36
YTDGAC N G G R + ++
Sbjct: 157 IYTDGACLDNGGLSPQAGCAFYFRPPAEDTQDGRRHNRRRPGTMEFPPPSQGYTSFHLEK 216
Query: 37 KIISGGEKETTNNRMELMAAI----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQN 92
+ G T+NR EL A I + + +++ TDS YV +G + W+K W +N
Sbjct: 217 RGPFGDPSSQTSNRAELRAVIGALRFRVWQGEGFRTLVIATDSEYVVEGATNWVKGWLRN 276
Query: 93 GWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
W+T E H L + + N D+ A+ AA
Sbjct: 277 NWRTRSGPVKNKDLWEALLGEIERHHDKGLKVLFWRIPRELNMVADQKAKIAAQE 331
>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1139
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E T EL+ + L +
Sbjct: 827 VYTDGS--GIHGKVGAAALAPPIHTQELAYLGKETTATVYAAELLGILMGL-------NL 877
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + S +V+ YWI H
Sbjct: 878 ILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQ 937
Query: 130 GNQENEKVDRIARNA 144
G + NE D++A A
Sbjct: 938 GIEGNELADKLAMEA 952
>gi|306836559|ref|ZP_07469529.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
gi|304567583|gb|EFM43178.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
Length = 398
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKALT 61
++ V Y DG GNPG G G ++ E ++ K+ +NN E ++ L
Sbjct: 1 MK-VIIYADGGSRGNPGVAGSGTVVYAADGETVLREIVYVVGKKASNNVAEYHGLLRGLE 59
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V Y DS V + + K +
Sbjct: 60 AAVELGADDVDFYMDSRLVVEQMNGRW----------KIKHPDMKQLGVQAQKLMQQLGR 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
V+L W++ +N+ D ++
Sbjct: 110 VNLSWVR----RNDNKVADALSNE 129
>gi|242825355|ref|XP_002488423.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712241|gb|EED11667.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1181
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + M + A++ +
Sbjct: 871 WSDGS-RLDTGRAGAGVALQAIPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQP 929
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + A V + W+
Sbjct: 930 LGPIWILLDAQNAIDRLKSARPG---------PGQALVLRAHRAVEKLAMRGQPVTIQWV 980
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 981 PGHSGVVGNEQADQAAKRAASK 1002
>gi|145605894|ref|XP_370307.2| hypothetical protein MGG_06804 [Magnaporthe oryzae 70-15]
gi|145013653|gb|EDJ98294.1| hypothetical protein MGG_06804 [Magnaporthe oryzae 70-15]
Length = 683
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 16/148 (10%)
Query: 6 LREVHAYTDGA--CSGNPGP-GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT- 61
++ ++DG+ N G G+G ++ KG+ +
Sbjct: 384 PNDILVFSDGSEQFDQNQGHLVGYGFIIYRKGEITAQGSAALGGPCQVFDAETVGALRGL 443
Query: 62 ---ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ + DS+ V G Q + + + + +
Sbjct: 444 EAADANPGDTIWVCVDSASVIWGLRGSASLSSQWAYIRFHELVEELKNTGV--------- 494
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
V + W GH G + NE DR+A A
Sbjct: 495 SVRIRWCPGHEGIEGNENADRLADEGAK 522
>gi|299821690|ref|ZP_07053578.1| ribonuclease HI [Listeria grayi DSM 20601]
gi|299817355|gb|EFI84591.1| ribonuclease HI [Listeria grayi DSM 20601]
Length = 131
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA---IKALTALKYP 66
+ D A +GNPG G G++L + ++ TN+ E +A ++ L
Sbjct: 3 EIFVDAASAGNPGLSGAGIVLSQGELHEQLAIPLGTMTNHEAEFIAIKLGLRRAVKLGET 62
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V +Y+DS + + + +++ ++ + + ++ +
Sbjct: 63 AFVRVYSDSKVAIEAIEKRFV---------KNPLFKPHLEEILQLISHFSLFFIEWRSV- 112
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
+N K D +AR A S +
Sbjct: 113 -----TKNRKADELARRAIQSQRK 131
>gi|17505482|ref|NP_492581.1| RNase H family member (rnh-1.3) [Caenorhabditis elegans]
gi|3873975|emb|CAB03838.1| C. elegans protein C04F12.9, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 139
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 12 YTDGACSGNPG---PGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTA--LKY 65
YTDG+ GN GG+GV + + + S TNNR EL A A
Sbjct: 6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMARDVP 65
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-----SAQHKV 120
V ++TDS ++W W+ NG+KTS + VKN DL + V
Sbjct: 66 DSHVRIHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSGKTV 125
Query: 121 DLYWIKGHAGN 131
+ ++GH+
Sbjct: 126 EFEHVRGHSNR 136
>gi|67903322|ref|XP_681917.1| hypothetical protein AN8648.2 [Aspergillus nidulans FGSC A4]
gi|40741492|gb|EAA60682.1| hypothetical protein AN8648.2 [Aspergillus nidulans FGSC A4]
gi|259483134|tpe|CBF78260.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1581
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 11/145 (7%)
Query: 8 EVHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ Y+DG+ + G G G+ + K T E+M A++ L A
Sbjct: 1277 QISVYSDGS-RTSQGAGYGYAIYFGPILVSKGHGPAGPRTEVYDAEIMGAVEGLRAALGQ 1335
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN-------IDLWMKFVEASAQHK 119
V T V + + T + + + + +
Sbjct: 1336 PCVGYST--QLVILLDNLAAASLLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKP 1393
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ + WI GH+G NE D++A+
Sbjct: 1394 LQVRWIPGHSGIAGNELADKLAKLG 1418
>gi|221316468|ref|ZP_03598273.1| ribonuclease H [Bacillus subtilis subsp. subtilis str. NCIB 3610]
Length = 93
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++V Y DGA N GG+G +LRY K I G + TNN ME+ AAI+AL
Sbjct: 1 MKKVVIYCDGAARNNGKDNNVGGFGAVLRYGDHVKTIKAGFRNVTNNMMEIRAAIEALKQ 60
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNG 93
V + TDS+Y+ +Q K N
Sbjct: 61 LKTTNIPVEINTDSAYLCNCMNQGWYKKWMNN 92
>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1758
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G L +++ G E TT EL+ L + +
Sbjct: 1447 VYTDGSDIH--GKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASGRR 1504
Query: 70 L--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++TD+ + S +++ + S +V+ YWI
Sbjct: 1505 RAAIFTDNQ---------AALKALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPA 1555
Query: 128 HAGNQENEKVDRIARNA 144
H G + NE D++A+ A
Sbjct: 1556 HQGIEGNELADKLAKEA 1572
>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E TT EL+ +
Sbjct: 1453 VYTDGS--GIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGI-------HMGLNL 1503
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + S +V+ YWI H
Sbjct: 1504 ILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQ 1563
Query: 130 GNQENEKVDRIARNA 144
G + NE D +A+ A
Sbjct: 1564 GIEGNELADNLAKEA 1578
>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E TT EL+ +
Sbjct: 1439 VYTDGS--GIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGI-------HMGLNL 1489
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + S +V+ YWI H
Sbjct: 1490 ILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQ 1549
Query: 130 GNQENEKVDRIARNA 144
G + NE D +A+ A
Sbjct: 1550 GIEGNELADNLAKEA 1564
>gi|294872352|ref|XP_002766253.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239866960|gb|EEQ98970.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1013
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 10/138 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ G+ G GG + + + S + AI+ +
Sbjct: 737 IFTDGSKHGD-GAGGAFIAIIDGSAVEKQSFRLPRYATIHQCELEAIRRALRWIAFSEHK 795
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ Q + ++ T + + S + D++W GH G
Sbjct: 796 ---------GKQWRVFTDSQASILTIKNRVTTERSGIAQDIARLSLLVRADIHWCPGHEG 846
Query: 131 NQENEKVDRIARNAAVSF 148
+ NE+VD +A +F
Sbjct: 847 ARWNEEVDVLANIGRKAF 864
>gi|255027739|ref|ZP_05299725.1| hypothetical protein LmonocytFSL_17742 [Listeria monocytogenes FSL
J2-003]
Length = 130
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 17/140 (12%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPCKV 69
+ DGA +GNPGP G G++L+ G + + TN+ E +A L K +
Sbjct: 1 FVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLI 60
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LY+DS + + K +E + ++ +
Sbjct: 61 RLYSDSKVAIEAIHKRH------------AKNPLFKPHLDAILEMADSLELFFAEWR--- 105
Query: 130 GNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 106 NVSQNKQADQLARQAIKKQK 125
>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
Length = 1915
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 13/135 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
H YTD + G G ++ + +S T + ++ AI+ + +
Sbjct: 955 HIYTDASIIE--GRVGMAIICDETTIQWKLSDKCSIYTAETLAILKAIEFTISEINDSNI 1012
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+++DS + + ++ + W+ GH
Sbjct: 1013 TIFSDS-----------LSALTSLQNLYSPSDIVRKIQNTHYIPKQQDKNITYSWVPGHC 1061
Query: 130 GNQENEKVDRIARNA 144
NE D A+ A
Sbjct: 1062 NIDGNELADSAAKLA 1076
>gi|242765583|ref|XP_002341004.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724200|gb|EED23617.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + M + A++ +
Sbjct: 62 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEAFDAELMGVATALEWALERQP 120
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + A V + W+
Sbjct: 121 LGPIWVLLDAQNAIDRLKSARPG---------PGQALVLRAHRAVEKLAMRGQPVTIQWV 171
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 172 PGHSGVVGNEQADQAAKRAASK 193
>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 510
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E TT EL+ +
Sbjct: 198 VYTDGS--GIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGI-------HMGLNL 248
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + + +V+ YWI H
Sbjct: 249 ILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQ 308
Query: 130 GNQENEKVDRIARNA 144
G + NE D +A+ A
Sbjct: 309 GIEGNELADNLAKEA 323
>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1776
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E TT EL+ +
Sbjct: 1464 VYTDGS--GIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGI-------HMGLNL 1514
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + + +V+ YWI H
Sbjct: 1515 ILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQ 1574
Query: 130 GNQENEKVDRIARNA 144
G + NE D +A+ A
Sbjct: 1575 GIEGNELADNLAKEA 1589
>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G G L +++ G E TT EL+ +
Sbjct: 1453 VYTDGS--GIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGI-------HMGLNL 1503
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+L +D + S +++ + + +V+ YWI H
Sbjct: 1504 ILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQ 1563
Query: 130 GNQENEKVDRIARNA 144
G + NE D +A+ A
Sbjct: 1564 GIEGNELADNLAKEA 1578
>gi|331003540|ref|ZP_08327037.1| hypothetical protein HMPREF0491_01899 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412381|gb|EGG91772.1| hypothetical protein HMPREF0491_01899 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 200
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 18/141 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKYPC-- 67
AY DG+ +G+++ K E EK+ ++ + I+ A C
Sbjct: 67 AYVDGSYDDTTKSYSYGMVMMVKDDELHFNKKFEKDDMSDMRNVAGEIQGSMAAMQYCLD 126
Query: 68 ----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ D + K + K + AS VD
Sbjct: 127 NKIKSISIFYDYEGIEKWCNGDW-----------KAKKEGTQKYVEFYKNASKYVDVDFI 175
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+KGH+G++ N+ D +A+ A
Sbjct: 176 KVKGHSGDKYNDMADELAKKA 196
>gi|317034479|ref|XP_001396454.2| hypothetical protein ANI_1_776114 [Aspergillus niger CBS 513.88]
Length = 271
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 32/169 (18%)
Query: 4 KHLREVHAYTDGACSGNPGPGGW---GVLLRYKGK----------EKIISGGEKETTNNR 50
+HL + DGAC N G GV + K S + R
Sbjct: 103 RHLGCIVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACER 162
Query: 51 MELMAAIKALTAL----------KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK 100
L A + + V++ +DS YV +G ++WI KW+ N W T+
Sbjct: 163 ALLGAYVMQKCWDGLSEMTGDGEERLHTVVIKSDSEYVVRGMTEWIFKWKANDWTTAKGL 222
Query: 101 TVKNIDLWMKFVE-----ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
V N + + K + Q V + + + N++ DR+A +A
Sbjct: 223 PVANQEHFKKIDSLVESLENEQVPVQFWQVP----REFNQEADRLAASA 267
>gi|240146765|ref|ZP_04745366.1| RNAse H family protein [Roseburia intestinalis L1-82]
gi|257201049|gb|EEU99333.1| RNAse H family protein [Roseburia intestinalis L1-82]
Length = 224
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 4/139 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V+A+ DG+ + G+G L + G ++++ G +K+ M +A +
Sbjct: 85 MPSVYAFVDGSYNVATHVYGYGGFLIHDGIKEVLQGSDKDAEMAAMRNVAGEICGSMAAI 144
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V L ++ + + +
Sbjct: 145 RKAVELGLPEVTIYYDYMGIEMWATGAWKCNKKG----TAAYRDYVASVRNVIVIRFVKV 200
Query: 126 KGHAGNQENEKVDRIARNA 144
KGH+G NE+ D +A+ A
Sbjct: 201 KGHSGIDGNEEADMLAKQA 219
>gi|325292843|ref|YP_004278707.1| ribonuclease H [Agrobacterium sp. H13-3]
gi|325060696|gb|ADY64387.1| ribonuclease H [Agrobacterium sp. H13-3]
Length = 157
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG----EKETTNNRMELMAAIKALTALK 64
+ Y DG+ G W ++ ++ + G + M +M A+ L A
Sbjct: 5 LVIYADGSYDPVALSGSWAFIVFETERQIHAARGTEIGLTNNSFEVMAVMNALLWLDAQA 64
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGW-------KTSDKKTVKNIDLWMKFVEASAQ 117
L+TDS++V +G +W + W+ NGW + ++
Sbjct: 65 PGRPAKLWTDSAHVMEGCHRWREIWRSNGWKRINPDSRKRKRQIPDGGLWQNVDRLLLCN 124
Query: 118 HKVDLYWIKGHAGNQENEKVDRIAR 142
V++ W KGH+G N+ D +AR
Sbjct: 125 PNVEIAWCKGHSGIAGNDLADALAR 149
>gi|145616821|ref|XP_001414826.1| hypothetical protein MGG_14448 [Magnaporthe oryzae 70-15]
gi|145022824|gb|EDK06590.1| hypothetical protein MGG_14448 [Magnaporthe oryzae 70-15]
Length = 328
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 176 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 235
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V GF + Q + + +
Sbjct: 236 LKGLQAAAKAQPGARIWICVDSTSVIWGFRGDAPRSSQWAF---------LEFHNLVDLL 286
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 287 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 317
>gi|239814358|ref|YP_002943268.1| ribonuclease H [Variovorax paradoxus S110]
gi|239800935|gb|ACS18002.1| ribonuclease H [Variovorax paradoxus S110]
Length = 152
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 45/159 (28%), Gaps = 26/159 (16%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII----SGGEKETTNNRMELMAAIKAL 60
L Y DG+ NPG G G ++ + S + +
Sbjct: 2 QLPHWTVYCDGSAMPNPGRMGAGAVITEPDGTRHTLSLASHATGCNNEAELRALTLALED 61
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ V YTD+S + +Q G + + +
Sbjct: 62 LKARGATAVQAYTDNSILV----------EQLGTPGARPIARMAGLFEDARALLGSFEEA 111
Query: 121 DLYWIKGHAGNQENEKVDRIARN--------AAVSFKNK 151
L+W+ H ++ D +AR AA K K
Sbjct: 112 SLHWVPRHRNHE----ADALARASLGVGPKPAARMAKKK 146
>gi|289619416|emb|CBI53699.1| unnamed protein product [Sordaria macrospora]
Length = 657
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 45/160 (28%), Gaps = 23/160 (14%)
Query: 6 LREVHAYTDGA----CSGNPGPG--------------GWGVLLRYKGKEKIISGGEKETT 47
E+ YTDG+ G P G+G ++ E
Sbjct: 276 PSEIVVYTDGSMIAKQMGLPAHAEDPDAEERPEGECVGFGYVIFQGQTELGR----GCGQ 331
Query: 48 NNRMELMAAIKALTALKYPCKVLLYTDSSY-VHKGFSQWIKKWQQNGWKTSDKKTVKNID 106
+ E+ A + V L ++ + +T +
Sbjct: 332 LEQAEVFDAEAEGARHGHKAAVALLPEAQARPRITICLDNTSVIRGLRETPAASSQAAFL 391
Query: 107 LWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ ++ VD W+ GH G NE D +A+ A
Sbjct: 392 DFRAIRKSYGPSLVDFRWVPGHKGITGNEIADELAKAGAE 431
>gi|261417356|ref|YP_003251039.1| ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
gi|261373812|gb|ACX76557.1| ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326088|gb|ADL25289.1| ribonuclease H1 [Fibrobacter succinogenes subsp. succinogenes S85]
Length = 195
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKA 59
M++ + + DG+ S GP GW ++ E SG +R + +
Sbjct: 52 MEAPAPDGIRVFVDGSFSPGFGPAGWAFVVTEDDNELARGSGITAFDAESRNIDGEVMAS 111
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A+++ + + ++G ++W K Q + H+
Sbjct: 112 FQAMRWLDAHDMKGVICHDYEGIARWAKGEWQAKSNIAK---------MYVAAAKPYLHR 162
Query: 120 VDLYWIKGHAGNQENEKVDR 139
V + H G + NE VD+
Sbjct: 163 VQFEKVAAHTGVKWNELVDK 182
>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 377
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 8/143 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAIKALT--ALK 64
+TD A N G +++ + G EK T EL+A L
Sbjct: 66 VFTD-AAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRS 124
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLY 123
+ + + + S + + ++ E + + L
Sbjct: 125 HSSEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQ 184
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
W+ GH+G + NE D++A+ +
Sbjct: 185 WVPGHSGIKGNEMADQLAKQSIN 207
>gi|297700277|ref|XP_002827182.1| PREDICTED: ribonuclease H1-like [Pongo abelii]
Length = 270
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--L 63
V YTDG CS N G + TN R E+ AA KA+
Sbjct: 140 VVVYTDGCCSSNGRRRSRAGIRFYWGPGHPLDVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ K++LYTDS + G + W+ W++NGWKTS K V N + + + +
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVPGWKKNGWKTSAGKEVINREDFPALERLTQGMDIQWA 259
Query: 124 WI 125
+
Sbjct: 260 SV 261
>gi|67524533|ref|XP_660328.1| hypothetical protein AN2724.2 [Aspergillus nidulans FGSC A4]
gi|40743836|gb|EAA63022.1| hypothetical protein AN2724.2 [Aspergillus nidulans FGSC A4]
gi|259486365|tpe|CBF84144.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1171
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 8 EVHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ Y+DG+ + G G G+ V T E+M A++ L A
Sbjct: 1015 QISVYSDGS-RTSQGAGYGYAVYFGPILVSTGHGPAGPRTEVYDAEIMGAVEGLRAALGQ 1073
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN-------IDLWMKFVEASAQHK 119
V T V + + T + + + + +
Sbjct: 1074 PCVGYST--QLVILLDNLAAASLLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKP 1131
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ + WI GH+G NE D++A+
Sbjct: 1132 LQVRWIPGHSGIAGNELADKLAKLG 1156
>gi|154269689|ref|XP_001535782.1| hypothetical protein HCAG_09292 [Ajellomyces capsulatus NAm1]
gi|150410077|gb|EDN05465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 223 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 266
>gi|156044334|ref|XP_001588723.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980]
gi|154694659|gb|EDN94397.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 789
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 9/145 (6%)
Query: 8 EVHAYTDGA---CSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTAL 63
++ ++DG+ N GG+ V+ ++ + S E AA+
Sbjct: 490 DIQIFSDGSKSESKDNATGGGF-VISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGTAKA 548
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----K 119
L TD ++ + V H K
Sbjct: 549 LTLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 608
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ + W+ GH NE D+ A+
Sbjct: 609 IRVRWVPGHLDIPGNEIADKAAKEG 633
>gi|126307694|ref|XP_001371969.1| PREDICTED: similar to polyprotein [Monodelphis domestica]
Length = 1339
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 12 YTDGACSGNPGPGGW--GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C N G E I +G + + + A+ L +V
Sbjct: 822 YTDGSCLQN--ESGILVARYAITTTAEVIEAGHLPSAISAQQAELEAVTRACELAKGKRV 879
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y + WQ G+ TS +KN + +EA + + I GH
Sbjct: 880 NIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVQRLLEALLLPRAIAIIKIPGH 939
Query: 129 AGNQENE---KVDRIARNAAVSF 148
+ ++N D+ A+ AA
Sbjct: 940 S--RKNSPHALADQYAKEAARQL 960
>gi|242765602|ref|XP_002341008.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724204|gb|EED23621.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 26 WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG--FS 83
WGV + + G E M + A++ + + ++ D+ +
Sbjct: 285 WGVANGEHVEVPMGHGHE-VFDAELMGVATALEWALERQPLGPIWVFLDAQNAIDRLRST 343
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ + + V + W+ GH+G + NE+ D+ A+
Sbjct: 344 RPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQWVPGHSGIEGNEQADQAAKR 392
Query: 144 AAVS 147
AA
Sbjct: 393 AASK 396
>gi|242811041|ref|XP_002485709.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218716334|gb|EED15756.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 733
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
L +++ P + +YTD+ + Q + + +
Sbjct: 453 AALEILLRSQPCDDNPHEATIYTDNQAAIRATCQPGRSS-------GQYILRRIVRHLGL 505
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ ++ +V L W+ GH G NEK D++A+ AA
Sbjct: 506 LRDNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAA 540
>gi|145614154|ref|XP_369696.2| hypothetical protein MGG_11303 [Magnaporthe oryzae 70-15]
gi|145021110|gb|EDK05239.1| hypothetical protein MGG_11303 [Magnaporthe oryzae 70-15]
Length = 1612
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ ++ + ++
Sbjct: 1332 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIDALKGLQ 1391
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A T + ++ + DS+ V G + Q + + +
Sbjct: 1392 AATKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 1442
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1443 EVRVRWCPGHQGIPGNDRADELAKAG 1468
>gi|302907575|ref|XP_003049676.1| hypothetical protein NECHADRAFT_57056 [Nectria haematococca mpVI
77-13-4]
gi|256730612|gb|EEU43963.1| hypothetical protein NECHADRAFT_57056 [Nectria haematococca mpVI
77-13-4]
Length = 102
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
MA ++AL V ++TDS Y K +QW + W+ GWKT++ VKN D+ + +
Sbjct: 1 MAILRALQIAPLDQAVQIFTDSQYSIKCVTQWARSWEAKGWKTANGAEVKNQDIIRQLLA 60
Query: 114 ASAQHK-----VDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + W+KGHA ++ N D++A + A
Sbjct: 61 KKREREKAGGATYFEWVKGHASSRGNIAADKLAVDGAD 98
>gi|145607960|ref|XP_001408203.1| hypothetical protein MGG_11000 [Magnaporthe oryzae 70-15]
gi|145015427|gb|EDJ99963.1| hypothetical protein MGG_11000 [Magnaporthe oryzae 70-15]
Length = 1025
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 687 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGA 746
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 747 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 797
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 798 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 828
>gi|328461792|gb|EGF34023.1| ribonuclease HI [Lactobacillus rhamnosus MTCC 5462]
Length = 143
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 21/148 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT----ALK 64
+ YTDGA GNPGP G G+L+ ++ +N+ E AAI +
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPQQIQHHAALPAMSNHEAEFAAAIAGFKLLIESGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + + +L E V W
Sbjct: 62 TTGTVAYYSDSKLVIQAIEKRY----------AKHYSALTAELLSLIDEFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
I +++N +A+ K K+
Sbjct: 109 IP----DRQNRGAHHLAQQGLHQLKPKV 132
>gi|315056339|ref|XP_003177544.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
gi|311339390|gb|EFQ98592.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
Length = 198
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 5 HLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAIK-- 58
+ + V DGAC GN GV + + + TN + E++A I
Sbjct: 22 NSQPVVISVDGACRGNGREHSDAAAGVFVDHGSRFNESIPLNLDRPTNQKAEILAGIHGL 81
Query: 59 ---ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
V++ +DS Y+ KG ++W +KW+ NG+KT + V N +L+ + A
Sbjct: 82 SKAREMDGGPSRHVVIKSDSQYMVKGVNEWSRKWESNGYKTVHGQPVANRELFQELNSAK 141
Query: 116 AQHKVDLYWI-KGHAGNQENEKVDRIARNA 144
+ + H ++N DR A A
Sbjct: 142 KSLEQSGIEVDFQHVPREQNRDADRWANKA 171
>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
Length = 1186
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 3/138 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + YTDG+ G G G + + + + G + + I +
Sbjct: 983 KSLSIYTDGS--GIEGEIGSAAVCPLTKQTRSVHMGSDTLSTVYAAELQGISLALHIAKE 1040
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+Q + S + I ++ ++ + V + WI
Sbjct: 1041 YADGDGERKDIAVYTDNQAVIWSIAKAEGRSGAYILAGIAQQVQELQ-NKGLSVTVRWIP 1099
Query: 127 GHAGNQENEKVDRIARNA 144
H G + NE D+ A+ A
Sbjct: 1100 AHVGIEGNEAADQAAKEA 1117
>gi|242807803|ref|XP_002485032.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715657|gb|EED15079.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 550
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + M + A++ +
Sbjct: 193 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQP 251
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + A V + W+
Sbjct: 252 LGPIWVLLDAQNAIDRLKSARPG---------PGQALVLRAHRAVEKLAMRGQPVTIQWV 302
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 303 PGHSGVVGNEQADQAAKRAASK 324
>gi|86740144|ref|YP_480544.1| bifunctional RNase H/acid phosphatase [Frankia sp. CcI3]
gi|86567006|gb|ABD10815.1| Phosphoglycerate mutase [Frankia sp. CcI3]
Length = 378
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + DG GNPGP G+G ++R G K+++ E+ + R A +
Sbjct: 3 TVRRLVIEADGGSRGNPGPAGYGAVVRDAGSGKLLA--ERADSIGRATNNVAEYSGLIAG 60
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ D+ + S+ + + WK + + V W
Sbjct: 61 LRAAAEIAPDAELEVRMDSKLVVEQMSGRWKVKHPAMRPLVAEATELAARFPA--VRFQW 118
Query: 125 IKGHAGNQENEKVDRI 140
+ N DR+
Sbjct: 119 VP----RARNADADRL 130
>gi|9629926|ref|NP_056914.1| hypothetical protein FFV_gp1 [Feline foamy virus]
gi|82281205|sp|O93209|POL_FFV RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Protease/Reverse transcriptase; AltName:
Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H;
Short=RNase H; Contains: RecName: Full=Integrase;
Short=IN; AltName: Full=p42In
gi|2842430|emb|CAA70075.1| pol [Feline foamy virus]
gi|3123539|emb|CAA11581.1| pol [Feline foamy virus]
Length = 1156
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYK-----GKEKIISGGEKETTNNRMELMAA-IKAL 60
YTDG+ +P G G++ K++ S T E+ A
Sbjct: 593 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 652
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-K 119
L +L+ TDS+YV K +++ + W NG+ + KK +K+I W +
Sbjct: 653 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 712
Query: 120 VDLYWIKGH-----AGN-QENEKVDRIARNA 144
V + GH + + N D++A A
Sbjct: 713 VVVTHEPGHQKLDSSPHAYGNNLADQLATQA 743
>gi|74640|pir||GNLJSP pol polyprotein - human foamy virus
Length = 886
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 400 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 459
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 460 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDI 519
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KG + + N D++A
Sbjct: 520 TIQHEKGISLQIPVFILKGNALADKLATQG 549
>gi|110282984|sp|P14350|POL_FOAMV RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;
Contains: RecName: Full=Protease/Reverse
transcriptase/ribonuclease H; AltName:
Full=p87Pro-RT-RNaseH; Contains: RecName:
Full=Protease/Reverse transcriptase; AltName:
Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H;
Short=RNase H; Contains: RecName: Full=Integrase;
Short=IN; AltName: Full=p42In
gi|1617063|emb|CAA69003.1| pol [Human foamy virus]
gi|1617068|emb|CAA68997.1| pol [Human foamy virus]
gi|1617073|emb|CAA68999.1| pol [Human foamy virus]
gi|1850918|gb|AAB48112.1| pro-pol protein [Human spumaretrovirus]
Length = 1143
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 597 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 656
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 657 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDI 716
Query: 121 DLYWIKGHAGN------QENEKVDRIARNA 144
+ KG + + N D++A
Sbjct: 717 TIQHEKGISLQIPVFILKGNALADKLATQG 746
>gi|256544538|ref|ZP_05471911.1| ribonuclease H1 [Anaerococcus vaginalis ATCC 51170]
gi|256399863|gb|EEU13467.1| ribonuclease H1 [Anaerococcus vaginalis ATCC 51170]
Length = 204
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 13/141 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKALTA 62
V AY DG+ S G G++ K + I N E+ A++ A+
Sbjct: 67 DSVIAYIDGSYSKKDKKYGVGIVYITDEKIEEIYKDFDDEFHIHRNVAGEVKASVGAINK 126
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +Y Y + N + F +A + V
Sbjct: 127 AISEGKKTIYIHYDYQGIESWARGDWKRNNELTK---------RYYEFFQKAKKKIDVHF 177
Query: 123 YWIKGHAGNQENEKVDRIARN 143
+K H+ ++ N+ D +A+
Sbjct: 178 IKVKAHSNDKYNDMADALAKK 198
>gi|156052453|ref|XP_001592153.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980]
gi|154704172|gb|EDO03911.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 852
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 520 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 578
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 579 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 637
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 638 VEGNELADKLAKEA 651
>gi|156037406|ref|XP_001586430.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980]
gi|154697825|gb|EDN97563.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 922
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 591 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 649
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 650 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 708
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 709 VEGNELADKLAKEA 722
>gi|156033247|ref|XP_001585460.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154699102|gb|EDN98840.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 358
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 26 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 84
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 85 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 143
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 144 VEGNELADKLAKEA 157
>gi|156039948|ref|XP_001587081.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980]
gi|154696167|gb|EDN95905.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1500
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 1168 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 1226
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 1227 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 1285
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 1286 VEGNELADKLAKEA 1299
>gi|156043557|ref|XP_001588335.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980]
gi|154695169|gb|EDN94907.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 674
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 343 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 401
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 402 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 460
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 461 VEGNELADKLAKEA 474
>gi|156064993|ref|XP_001598418.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980]
gi|154691366|gb|EDN91104.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1477
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 1310 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 1368
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ GH
Sbjct: 1369 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPGHTS 1427
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 1428 VEGNELADKLAKEA 1441
>gi|167754778|ref|ZP_02426905.1| hypothetical protein CLORAM_00282 [Clostridium ramosum DSM 1402]
gi|237735936|ref|ZP_04566417.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705610|gb|EDS20189.1| hypothetical protein CLORAM_00282 [Clostridium ramosum DSM 1402]
gi|229381681|gb|EEO31772.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 195
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 3/136 (2%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ AY DG+ + G+G ++ + K G+ N A + L C
Sbjct: 58 LIAYVDGSYNIKTHEYGFGCVIIEEQKVIKEMYGKGADENYASMRNVAGEIL---GSICA 114
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ ++ Y + ++ + K E K+ + H
Sbjct: 115 MEFAKNNGYKQICIYFDYEGIEKWANGMWKANKPGTQEYQRKVKEYRQDLKIAFVKVLAH 174
Query: 129 AGNQENEKVDRIARNA 144
+G+ NE+ D +A+ A
Sbjct: 175 SGDFYNERADVLAKKA 190
>gi|261336140|dbj|BAI44772.1| pol-like protein [Alternaria alternata]
Length = 1295
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 5/145 (3%)
Query: 2 DSKHLRE--VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
D +H++E + YTDG+ G G G L + + + G + + I
Sbjct: 973 DKEHVKEDSLSIYTDGS--GIEGEIGSAALCPLTQQTRSVHMGSDTESTVYAAELQGISL 1030
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ +Q S + I ++ ++
Sbjct: 1031 ALQIAQEYASRNGARRDVAIYTDNQAAVWSIAKVEGRSGAYILAEIARQVRELQ-DNGRT 1089
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V + WI H G NE VD+ A+ A
Sbjct: 1090 VTVRWIPAHVGIPGNEAVDKAAKEA 1114
>gi|312879052|ref|ZP_07738852.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
gi|310782343|gb|EFQ22741.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
Length = 133
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTALKYP--CKV 69
DGA GNPG G L + + S TNN E A ++ L + ++
Sbjct: 7 DGASRGNPGEACAGAFLEDQDGKVLWECSQYLGVRTNNEAEYEALLRLLEEARRRGVAEL 66
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS V ++ +L + E KV L W+
Sbjct: 67 EVCGDSRLVVCQVNRQW-----------KINLPHLRELASRAWELMEGMKVTLRWVP--- 112
Query: 130 GNQENEKVDRIARNAAVSFKN 150
++N + D ++ A K
Sbjct: 113 -REQNARADALSNRALDERKR 132
>gi|242821186|ref|XP_002487629.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712550|gb|EED11975.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 664
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S A A
Sbjct: 365 DIVIFSDGSRLADGRAGG-GYIRLQAHHQFLHSSLLYGHGKEVFNAEAEAALAGAQAAIA 423
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + +
Sbjct: 424 YPTAQFATNLWICLDNLEVVIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHIKSGSIQ 483
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 484 IRWVPGHAKIPENEAADLAAKEGAASI 510
>gi|15644051|ref|NP_229100.1| ribonuclease H-related protein [Thermotoga maritima MSB8]
gi|4981855|gb|AAD36370.1|AE001785_1 ribonuclease H-related protein [Thermotoga maritima MSB8]
Length = 223
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 13/152 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK 58
+D++ + AY DG+ G G++L Y K +E +E ++R +
Sbjct: 61 LDTETM---IAYVDGSYDE---VCGSGIVLCYRGKKEEYYFWTNIEEFKDSRNITGEIMA 114
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL A+ Y K + + K V +
Sbjct: 115 ALFAMDYALKKGARK-----LVLRYDLEGLEKWATEEYRTNKLVTKVYRHYYRKFCQMGL 169
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
KV IK H+GN N++ D +A+ A+ N
Sbjct: 170 KVVFEKIKSHSGNFCNDEADSLAKKASKKESN 201
>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
Length = 602
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + YTDG+ G G G + + + + G + + I +
Sbjct: 297 RCLSIYTDGS--GIDGETGAAAVCPLIQETRAVHMGATTVSTVYAAELQGISLALQIAEQ 354
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+Q S ++ I ++ ++ V + WI
Sbjct: 355 YVERGGKRRDIAVYTDNQAAIWSITKAEGRSGAYILEEIARQVQRLQ-DKGRPVTVRWIP 413
Query: 127 GHAGNQENEKVDRIARNA 144
H G NE D A+ A
Sbjct: 414 AHVGIPGNEAADIAAKEA 431
>gi|163785249|ref|ZP_02179917.1| Ribonuclease HI [Hydrogenivirga sp. 128-5-R1-1]
gi|159879481|gb|EDP73317.1| Ribonuclease HI [Hydrogenivirga sp. 128-5-R1-1]
Length = 59
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 93 GWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
WKTS KK V + +W + E +HK+ W+KGH+G++ENE D+IA+ A +K +
Sbjct: 1 NWKTSSKKEVSHKTMWQEIYELMQKHKIHPIWVKGHSGHKENELCDKIAKEEAEKYKKQ 59
>gi|194217546|ref|XP_001502929.2| PREDICTED: similar to polyprotein [Equus caballus]
Length = 1166
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ + G G+ ++ I + T+ + + A+ L +
Sbjct: 475 FIDGSSFIDQGIRKAGYAIV---NALHVIEAQALPANTSAQKAELIALTRALHLGKDMVI 531
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G + +K + + + +V + +GH
Sbjct: 532 NIYTDSKYAFLVLHAHGIIWKERGLLNTKNSPIKYGAEILALLNSVLLPKQVAVVHCRGH 591
Query: 129 AGN-----QENEKVDRIARNAAVS 147
+ + N DR A+ AA
Sbjct: 592 QKDLSLESKGNNFADREAKRAAKQ 615
>gi|242787321|ref|XP_002480983.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218721130|gb|EED20549.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 944
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 645 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 703
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 704 YPTAQFATNLWICLDNLEVAVRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 763
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 764 IRWVPGHAKIPENEAADLAAKEGAASI 790
>gi|242812940|ref|XP_002486065.1| ribonuclease H1, putative [Talaromyces stipitatus ATCC 10500]
gi|218714404|gb|EED13827.1| ribonuclease H1, putative [Talaromyces stipitatus ATCC 10500]
Length = 173
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 27/167 (16%)
Query: 8 EVHAYTDGACSGNPGPG---GWGVLLRY------KGKEKIISGGEKETTNNRMELMAAI- 57
+ Y DG C GN PG +++ + + + N+ + AI
Sbjct: 4 TMKIYVDGGCRGNGQPGSIAAAAACIQHRSGNYNCFTRVVNESPDGDPPTNQRAEITAII 63
Query: 58 ---------KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
++ +++DS Y ++WI KW++NG+ S V N DL
Sbjct: 64 IALEIAVEKYRELDGNPYLELEIFSDSKYAVNCMNEWIYKWERNGYINSAGNPVANQDLI 123
Query: 109 MK----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + + + +V WI + NE D+ + +
Sbjct: 124 REASGLDDDLNEEGRVTYTWIP----RERNEVADKWCNKELDEIEEQ 166
>gi|242826378|ref|XP_002488629.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712447|gb|EED11873.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1744
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 1445 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 1503
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 1504 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 1563
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 1564 IRWVPGHAKIPENEAADLAAKEGAASI 1590
>gi|242784380|ref|XP_002480375.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218720522|gb|EED19941.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 728
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 429 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 487
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 488 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 547
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 548 IRWVPGHAKIPENEAADLAAKEGAASI 574
>gi|209489242|gb|ACI49024.1| hypothetical protein Cbre_JD04.009 [Caenorhabditis brenneri]
Length = 70
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ WIK W++NGWKT+ V N D+ +K + KV ++GHAG NEK D +A
Sbjct: 1 MNSWIKGWKRNGWKTATGSDVLNKDVLLKLDSLRQKVKVKFVHVRGHAGIDGNEKADELA 60
Query: 142 RNAAVSFKNK 151
R A + +
Sbjct: 61 RKGAQMYTKQ 70
>gi|281414044|ref|ZP_06245786.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 329
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS------GGEKETTNNRMELMAAIKAL 60
R + DG GNPG G+G L+R +I+ G L+A ++
Sbjct: 4 RVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMA 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L +V + DS V + S K L + +V
Sbjct: 64 RDLDPEARVHVLMDSKLVVEQMSGRW-----------KIKHDDMRRLAAEARSVLPPERV 112
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
WI N+ DR++ A +
Sbjct: 113 SYEWIP----RNRNKDADRLSNEAMDA 135
>gi|145614142|ref|XP_364097.2| hypothetical protein MGG_08942 [Magnaporthe oryzae 70-15]
gi|145021103|gb|EDK05232.1| hypothetical protein MGG_08942 [Magnaporthe oryzae 70-15]
Length = 782
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 546 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 605
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 606 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 656
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 657 EVRVRWCPGHQGIPGNDRADELAKAG 682
>gi|289435226|ref|YP_003465098.1| hypothetical protein lse_1863 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171470|emb|CBH28014.1| rnhA [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 132
Score = 54.9 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 13/140 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DGA +GNPG G GV+L+ +G + ++ TN+ E +A L A
Sbjct: 2 EVFVDGASAGNPGLSGAGVVLKAEGVYEQLAIPLAIMTNHEAEFVAIKLGLEAALKKKAT 61
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ S + T + +++ ++ ++ V+
Sbjct: 62 FIRLYSD-------SKVAIEAIQKRHTKNPLFKPHLEEILRMSDSLELFFVEWR------ 108
Query: 130 GNQENEKVDRIARNAAVSFK 149
+N++ D++AR+A K
Sbjct: 109 NVAQNKQADQLARHAIKKQK 128
>gi|300934127|ref|ZP_07149383.1| bifunctional RNase H/acid phosphatase [Corynebacterium resistens
DSM 45100]
Length = 382
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 37/142 (26%), Gaps = 12/142 (8%)
Query: 13 TDGACSGNPGPGGWG--------VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
DG GNPG G G + K + + TNN E + L
Sbjct: 7 CDGGSRGNPGVAGAGSSIVDAASAVRGEKRELAAQWEHLDKATNNVAEYHGLVNGLKLAA 66
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
S F +Q + K + V+ W
Sbjct: 67 EVASKQGEKPSDVELDVFMDSKLIVEQMSGRWKIKHPDMKPLAAKAQELGAVFAAVNYTW 126
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+ +N++ D +A A
Sbjct: 127 VP----RAQNKRADELANRAMD 144
>gi|242825949|ref|XP_002488544.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712362|gb|EED11788.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 453
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 154 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 212
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 213 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 272
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 273 IRWVPGHAKIPENEAADLAAKEGAASI 299
>gi|242827382|ref|XP_002488822.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712078|gb|EED11506.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 405
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 154 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 212
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 213 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 272
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 273 IRWVPGHAKIPENEAADLAAKEGAASI 299
>gi|289706127|ref|ZP_06502498.1| ribonuclease HI [Micrococcus luteus SK58]
gi|289557160|gb|EFD50480.1| ribonuclease HI [Micrococcus luteus SK58]
Length = 329
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS------GGEKETTNNRMELMAAIKAL 60
R + DG GNPG G+G L+R +I+ G L+A ++
Sbjct: 4 RVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMA 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L +V + DS V + S K L + +V
Sbjct: 64 RDLDPEARVHVLMDSKLVVEQMSGRW-----------KIKHEDMRRLAAEARSVLPPERV 112
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
WI N+ DR++ A +
Sbjct: 113 TYEWIP----RNRNKDADRLSNEAMDA 135
>gi|153801507|ref|ZP_01956093.1| ribonuclease HI, putative [Vibrio cholerae MZO-3]
gi|124122998|gb|EAY41741.1| ribonuclease HI, putative [Vibrio cholerae MZO-3]
Length = 63
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ W+ GW+ +DKK VKN LW + E S++ V+++ +K H+G + NE+ D +A AA
Sbjct: 1 MDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFKVKAHSGIEGNERADLLAVEAA 60
Query: 146 VS 147
+
Sbjct: 61 EA 62
>gi|322692284|gb|EFY84212.1| reverse transcriptase, putative [Metarhizium acridum CQMa 102]
Length = 1736
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 10/141 (7%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTAL 63
+ Y+DG+ S G G+G ++ + +G E A++ L A
Sbjct: 1420 PPLSLIVYSDGSLSP-SGAAGYGYVVHQNRRSVCQGAGRLGPAEVFDAEAKGALEGLKAA 1478
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + A K ++
Sbjct: 1479 LRL--------PQSATQRIVVCLDNIAAAKCLRGKPPDSSQRVFLTFQALAKTHRKTEVR 1530
Query: 124 WIKGHAGNQENEKVDRIARNA 144
WI GH NE+ D +A+
Sbjct: 1531 WIPGHTKIPGNEQADILAKTG 1551
>gi|260583588|ref|ZP_05851336.1| ribonuclease HI [Granulicatella elegans ATCC 700633]
gi|260158214|gb|EEW93282.1| ribonuclease HI [Granulicatella elegans ATCC 700633]
Length = 134
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYK-----GKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ TD A +GNPG G G+ + Y+ KE + A I
Sbjct: 2 IRVRTDAAVNGNPGKVGIGIEILYEKQQFLFKENSEQLMDNHQAELWAIYRALIILQEKE 61
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + L +DS + + K + E ++ L
Sbjct: 62 WHHDMIFLNSDSKFAMMAIEKNYTKQVAYQEILKKVQG-----------ELQFFPQLFLE 110
Query: 124 WIKGHAGNQENEKVDRIARNA 144
WI +EN D++AR A
Sbjct: 111 WIP----EKENRGADQLARQA 127
>gi|145606859|ref|XP_361330.2| hypothetical protein MGG_12067 [Magnaporthe oryzae 70-15]
gi|145014488|gb|EDJ99056.1| hypothetical protein MGG_12067 [Magnaporthe oryzae 70-15]
Length = 1188
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 850 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 909
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 910 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 960
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 961 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 991
>gi|239917465|ref|YP_002957023.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
gi|239838672|gb|ACS30469.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 322
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIIS------GGEKETTNNRMELMAAIKALTALKYPC 67
DG GNPG G+G L+R +I+ G L+A ++ L
Sbjct: 4 DGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLDPEA 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V + DS V + S K L + +V WI
Sbjct: 64 RVHVLMDSKLVVEQMSGRW-----------KIKHDDMRRLAAEARSVLPPERVSYEWIP- 111
Query: 128 HAGNQENEKVDRIARNAAVS 147
N+ DR++ A +
Sbjct: 112 ---RNRNKDADRLSNEAMDA 128
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 14/135 (10%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G R K IS + + + AI +
Sbjct: 958 TIYTDGSKME--GKVACACSFRN----KTISRRLPDGCSIFTAELHAILLALMAVKASER 1011
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ K Q + + + L + + + + V W+ H
Sbjct: 1012 SKF--------IICSDSKSALQALGRMKTDIPLVHKSLKLLDLITADRRDVTFIWVPSHV 1063
Query: 130 GNQENEKVDRIARNA 144
G + NE DR A+ A
Sbjct: 1064 GIEGNEAADREAKRA 1078
>gi|313632693|gb|EFR99667.1| ribonuclease HI [Listeria seeligeri FSL N1-067]
Length = 132
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPG G GV+L+ +G + ++ TN+ E +A L A K
Sbjct: 2 EVFVDGASAGNPGLSGAGVVLKAEGVYEQLAIPLAIMTNHEAEFVAIKLGLEAALKKKAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + + +++ ++ ++ ++
Sbjct: 62 FIRLYSDSKVAIEAIQKRHA---------KNPLFKPHLEEILRMSDSLELFFIEWR---- 108
Query: 128 HAGNQENEKVDRIARNAAVSFK 149
+N++ D++AR A K
Sbjct: 109 --NVAQNKQADQLARQAIKKQK 128
>gi|120402154|ref|YP_951983.1| ribonuclease H [Mycobacterium vanbaalenii PYR-1]
gi|119954972|gb|ABM11977.1| ribonuclease H [Mycobacterium vanbaalenii PYR-1]
Length = 307
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 11/143 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V TDG+ G G+G L Y + S + + AI A
Sbjct: 134 VWVATDGSVRG--RITGYGWLASTGEYGLQGLRHSTKLIGPKVVLVAELRAIGAAVQTLR 191
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKW----QQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + +DS + +W+ + KT + E ++
Sbjct: 192 GRDITVLSDSKFAIAMVKRWMAGEDVLPEGYAVYRESGKTPGLVRAQQMIYEDRD--RIT 249
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
W+KGH G NE D +AR A
Sbjct: 250 PVWVKGHRGEPLNEGADALARLA 272
>gi|30026465|gb|AAP06677.1| pol protein [Human endogenous retrovirus HCML-ARV]
gi|30269262|gb|AAP29639.1| pol protein [Homo sapiens]
Length = 1183
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 14/149 (9%)
Query: 8 EVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ Y DG NP G+ V+ E + + T+ + + A L
Sbjct: 629 DWELYMDGGSFINPQGERGAGYAVVTLDTVVE---ARSLPQATSAQKAELIAFIRALELS 685
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLY 123
V +YTDS Y +++ G S K +K ++ +E HKV +
Sbjct: 686 EGETVNIYTDSRYPFLTLQVHEASYKEKGLLNSGGKDIKYQQEILQLLEAVWKPHKVAVM 745
Query: 124 WIKGHAGNQ-----ENEKVDRIARNAAVS 147
+GH N + D AR AA +
Sbjct: 746 HCRGHQRASTLVGLGNSRAD--ARKAASA 772
>gi|224170547|ref|XP_002195988.1| PREDICTED: similar to Gag-Pol polyprotein, partial [Taeniopygia
guttata]
Length = 631
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I G T+ + + A+ L ++
Sbjct: 192 FTDGSSYVISGKRHAGYAV---TTSREVIEPGPLSANTSAQKAEIIALTRALELAKGREI 248
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKGH 128
+YTDS Y W++ G K +K+ ++ ++ KV + IK H
Sbjct: 249 NIYTDSRYAFGVVHAHGAIWKERGLLNLQGKNIKHSQEILRLLDAVQIPEKVAIMHIKAH 308
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++AA
Sbjct: 309 QKVSSELEEGNMLADREAKDAAK 331
>gi|329299185|gb|AEB80488.1| pol protein [Reticuloendotheliosis virus]
Length = 1193
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|331251935|ref|XP_003338548.1| hypothetical protein PGTG_20180 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317538|gb|EFP94129.1| hypothetical protein PGTG_20180 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 431
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 2/137 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + +TDG+ + G G V +N EL L
Sbjct: 262 RALIIFTDGSWILDKGAGAAAVAHPLGASIVASINPADSISNFEAELTGI--KLATELAK 319
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +++ F +V LYW
Sbjct: 320 QAIEADHSHEIDTVAIFCDNQGALTLSADPLSLSPGQHLYTDNFFSMRFLGRQVKLYWCP 379
Query: 127 GHAGNQENEKVDRIARN 143
GH G + NE D +A+
Sbjct: 380 GHEGIKANEAADALAKA 396
>gi|300811063|gb|ADK35799.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + T S Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTVSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|215398756|gb|ACJ65656.1| pol protein [Reticuloendotheliosis virus]
Length = 1193
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|215398752|gb|ACJ65653.1| pol protein [Reticuloendotheliosis virus]
Length = 1193
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|88605104|gb|ABD46829.1| pol protein [Reticuloendotheliosis virus]
Length = 1193
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|28927669|gb|AAF81697.2|AF246698_1 protease/polymerase [Fowlpox virus]
Length = 1193
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 758 GHQKDDAPTSTGNRRADEVAREVA 781
>gi|83630414|gb|ABC26820.1| polymerase [Reticuloendotheliosis virus]
Length = 1152
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I + T+ + + A+
Sbjct: 600 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAEPLPIGTSAQKAELIALTKALEWSKDK 656
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 657 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 716
Query: 127 GHAGNQ-----ENEKVDRIARNAA 145
GH + N + D +AR A
Sbjct: 717 GHQKDDAPTSTGNRRADEVAREVA 740
>gi|237803578|ref|ZP_04591163.1| ribonuclease H [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025560|gb|EGI05616.1| ribonuclease H [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 47
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 108 WMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
W E ++H V W++GH G+ NE+ D++A +
Sbjct: 1 WQLLDEQVSRHTVKWQWVRGHIGHPGNERADQLANRGVDEVR 42
>gi|167746814|ref|ZP_02418941.1| hypothetical protein ANACAC_01526 [Anaerostipes caccae DSM 14662]
gi|167653774|gb|EDR97903.1| hypothetical protein ANACAC_01526 [Anaerostipes caccae DSM 14662]
Length = 219
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 4/138 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + AY DG+ +G++LR KE + EK + + +
Sbjct: 61 QTLTAYVDGSYDHRKKEFSYGMVLR--KKEGDLYFAEKYADPALAAMRNVAGEIKGAQKA 118
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + + + G K + + +V +K
Sbjct: 119 MQYAVDSGYQKLAIYYDYEGIAKWCTGEW--AAKKEGTKAYRSFYDSVKDRLQVRFVKVK 176
Query: 127 GHAGNQENEKVDRIARNA 144
GH+ ++ N+K D +A++A
Sbjct: 177 GHSNDEYNDKADMLAKSA 194
>gi|1237256|gb|AAA93092.1| gag-pol precursor polyprotein gPr80 [Feline leukemia virus]
Length = 1784
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V E I + T+ + + A+ + K+
Sbjct: 1220 YTDGSSFIRNGERKAGAAV---TTESEVIWAASLPPGTSAQRAELIALTQALKMAKGKKL 1276
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + +EA ++ + GH
Sbjct: 1277 TVYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGH 1336
Query: 129 A-GN----QENEKVDRIARNAAVSFKNKI 152
G+ + N D A+ AA ++ +
Sbjct: 1337 QKGDSPQAKGNRLADDTAKKAATETQSSL 1365
>gi|238923863|ref|YP_002937379.1| RNAse H family protein [Eubacterium rectale ATCC 33656]
gi|238875538|gb|ACR75245.1| RNAse H family protein [Eubacterium rectale ATCC 33656]
Length = 206
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------EL 53
M S +A+ DG+ + G+G L ++ ++ G + + M +
Sbjct: 63 MKSSGENSTYAFVDGSFNKVTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEIKG 122
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
A ++++Y D + + + I +
Sbjct: 123 AEAAVKKAIELGIKELVIYYDYMGIEMWATGAW-----------KRNKAGTIAYHEYIMS 171
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ K+ +KGH+G + NE+ D++A+ A
Sbjct: 172 VKDKIKLTFVKVKGHSGVEGNEEADKLAKQA 202
>gi|187764199|gb|ACD35951.1| pol polyprotein [Porcine endogenous retrovirus]
Length = 1146
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + S + T+ + ELM A+ L + +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVVDGTHTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 650 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 709
Query: 131 -----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 710 AKDLISRGNQMADRVAKQAAQA 731
>gi|6688950|emb|CAB65341.1| unnamed protein product [Porcine endogenous retrovirus]
Length = 2376
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + S + T+ + ELM A+ L + +
Sbjct: 1164 FTDGSSYVVEGKRMAGAAVVDGTHTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 1222
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1223 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 1282
Query: 131 -----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 1283 AKDLISRGNQMADRVAKQAAQA 1304
>gi|6688946|emb|CAB65339.1| unnamed protein product [Porcine endogenous retrovirus]
Length = 2376
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + S + T+ + ELM A+ L + +
Sbjct: 1164 FTDGSSYVVEGKRMAGAAVVDGTHTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 1222
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1223 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 1282
Query: 131 -----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 1283 AKDLISRGNQMADRVAKQAAQA 1304
>gi|3005987|emb|CAA76582.1| pol [Porcine endogenous retrovirus]
Length = 868
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + S + T+ + ELM A+ L + +
Sbjct: 545 FTDGSSYVVEGKRMAGAAVVDGTHTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 603
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 604 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 663
Query: 131 -----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 664 AKDLISRGNQMADRVAKQAAQA 685
>gi|300811056|gb|ADK35793.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQNEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + T S Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTVSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLADE 721
>gi|145615306|ref|XP_360121.2| hypothetical protein MGG_13091 [Magnaporthe oryzae 70-15]
gi|145022161|gb|EDK06181.1| hypothetical protein MGG_13091 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 54.9 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-- 56
+D ++ YTDG+ N G+G + G E ++ + A
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAVFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 57 ---IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LRGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|227529326|ref|ZP_03959375.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
gi|227350754|gb|EEJ41045.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
Length = 129
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI----KALTALK 64
+ YTD A GNPGP G G+L+ + ++ +S + TN+ E AAI +
Sbjct: 2 LKIYTDAATKGNPGPTGLGILIINQHQQHQLSQTLESATNHEGEFAAAIAGFQYLVDHYD 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ VL YTDS + + L S V W
Sbjct: 62 HQETVLFYTDSRLLSDAIG-------------KNYTKHYQSQLKQLNQLLSQFTTVVTQW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ +EN +A A
Sbjct: 109 V----SERENHGAHNLANQA 124
>gi|296119751|ref|ZP_06838305.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295966905|gb|EFG80176.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 392
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 22/151 (14%)
Query: 6 LR--EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE----KETTNNRMELMAAIKA 59
++ +V Y DG GNPG G G ++ I+ K++TNN E ++
Sbjct: 1 MKFLKVIIYADGGSRGNPGVAGSGTVIYAADGSTILDEIVYVVGKKSTNNVAEYHGLLRG 60
Query: 60 LTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ +V Y DS V + + K +
Sbjct: 61 VERAAELGATEVEFYMDSKLVVEQINGRW----------KIKHPDMQRLAVEAKKIINKF 110
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
L W+ +N D+++ +A +
Sbjct: 111 ESFSLDWV----ARGKNSVADKLSNDAMDAC 137
>gi|145614853|ref|XP_001414096.1| hypothetical protein MGG_08444 [Magnaporthe oryzae 70-15]
gi|145021780|gb|EDK05857.1| hypothetical protein MGG_08444 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFYNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|308807192|ref|XP_003080907.1| putative RNase (ISS) [Ostreococcus tauri]
gi|116059368|emb|CAL55075.1| putative RNase (ISS) [Ostreococcus tauri]
Length = 342
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 20/139 (14%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKALTALKYPC 67
DGA GNPG G G LLR K ++ G E+ +
Sbjct: 208 DGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSERTVNEAEYAALCLGLRKAIELGIT 267
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
K+ + D S+ I +K + + + A+ K+
Sbjct: 268 KIEVRGD--------SKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKI------S 313
Query: 128 HAGNQENEKVDRIARNAAV 146
H + N+ D +A A
Sbjct: 314 HVKREFNKHADHLANMAVD 332
>gi|242825408|ref|XP_002488434.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712252|gb|EED11678.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 906
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 579 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 637
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + A V + W+
Sbjct: 638 LGPIWILLDAQNAIDRLKSARPG---------PGQALVLRAHRAVEKLAMRGQPVTIQWV 688
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 689 PGHSGVVGNEQADQAAKRAASK 710
>gi|21064964|gb|AAM29194.1| gag-pol polyprotein [porcine endogenous retrovirus B]
Length = 1720
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 1165 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 1221
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1222 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 1281
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 1282 QKAKDLISRGNQMADRVAKQAAQA 1305
>gi|14275843|emb|CAC39626.1| polymerase [Porcine endogenous retrovirus C]
Length = 1195
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 640 FTDGSSYVVEGKKMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 696
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 697 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 756
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 757 QKAKDLISRGNQMADRVAKQAAQA 780
>gi|17432485|gb|AAL38193.1| pol [porcine endogenous retrovirus]
Length = 1146
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 708 QKAKDLISRGNQMADRVAKQAAQA 731
>gi|6688948|emb|CAB65340.1| unnamed protein product [Porcine endogenous retrovirus]
Length = 2378
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 1164 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 1220
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1221 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 1280
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 1281 QKAKDLISRGNQMADRVAKQAAQA 1304
>gi|21064961|gb|AAM29192.1| gag-pol polyprotein [porcine endogenous retrovirus A]
Length = 1718
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 1165 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 1221
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1222 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 1281
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DR+A+ AA +
Sbjct: 1282 QKAKDLISRGNQMADRVAKQAAQA 1305
>gi|323884|gb|AAA43042.1| gag-abl-pol fusion polyprotein [Feline sarcoma virus]
Length = 697
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 12 YTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y+DG+ N G V E I + T+ + + A+ + K+
Sbjct: 522 YSDGSFIRNGERKAGAAV---TTESEVIWAASLPPGTSAQRAELIALTQALKMAKGKKLT 578
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA 129
+YTDS Y + +++ G TS+ K +KN + + +EA ++ + GH
Sbjct: 579 VYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGHQ 638
Query: 130 -GN----QENEKVDRIARNAAVSFKNKI 152
G+ + N D A+ AA ++ +
Sbjct: 639 KGDSPQAKGNRLADDTAKKAASETQSSL 666
>gi|254596587|gb|ACT75574.1| pol protein [Reticuloendotheliosis virus]
Length = 1193
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPG--GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G V+ I +G T+ + + A+
Sbjct: 641 TLFTDGSSYIRDGKRYTGAAVVTLD---SVIWAGPLPIGTSAQKAELIALTKALEWSKDK 697
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIK 126
V +YTDS Y +++ G T+ K +KN + + +V + K
Sbjct: 698 SVNIYTDSRYAFATLHVHGMIYRERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCK 757
Query: 127 GHA-GNQ----ENEKVDRIARNAA 145
GH G+ N + D +AR A
Sbjct: 758 GHQKGDAPTSTGNRRADEVAREVA 781
>gi|242794549|ref|XP_002482398.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718986|gb|EED18406.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2069
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 1742 WSDGS-RLDTGRVGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 1800
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ Q + + K V + W+
Sbjct: 1801 LGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQP---------VTIQWV 1851
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G + NE+ D+ A+ AA
Sbjct: 1852 PGHSGIEGNEQADQAAKRAASK 1873
>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1671
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 9/136 (6%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TD A N G L+ + A
Sbjct: 1375 VFTD-AAKENSALGA-AALIMDNSYRIRYGIQVGVGREKHGNVTTAELLAIYHG------ 1426
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
LY +Y S+ + N K + V+NI K +++ + L W+ GH+G
Sbjct: 1427 LYLRHTYTILSDSRAALRAIANSSKQVGGQIVQNILHTTKQLKSIGV-DLCLQWVPGHSG 1485
Query: 131 NQENEKVDRIARNAAV 146
+ NE D++A+ +
Sbjct: 1486 IKGNEMADQLAKQSIN 1501
>gi|153955428|ref|YP_001396193.1| ribonuclease H-related protein [Clostridium kluyveri DSM 555]
gi|219855844|ref|YP_002472966.1| hypothetical protein CKR_2501 [Clostridium kluyveri NBRC 12016]
gi|146348286|gb|EDK34822.1| Ribonuclease H-related protein [Clostridium kluyveri DSM 555]
gi|219569568|dbj|BAH07552.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 210
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK------IISGGEKETTNNRMELMAAIKAL 60
++AY DG+ + G+G++L + S E+ N E+ A+KA+
Sbjct: 70 NALYAYVDGSFNNKEKVAGYGLVLVQNDQVIFKDLGAFRSMEMNESKNVFGEIRGALKAV 129
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ Y+ +W+ N T D K + + +
Sbjct: 130 ELAIANDFKEITIVYDYMGIECW-AKGEWKANKVLTKDYKEFMQ--------KYMKKIDI 180
Query: 121 DLYWIKGHAG-NQENEKVDRIARNA 144
+K H+G ++ N+ D +A+ A
Sbjct: 181 KFKKVKAHSGEDKYNDMADLLAKKA 205
>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYK----GKEKIISGGEKETTNNRMELMAAIKAL--TA 62
+ ++D + N G V L + K+ G + + +LMA A+
Sbjct: 114 IAVFSDASGQHNH-LGAAAVALDRNNNVIQQRKVSIGSMEYWSVYAAKLMAIYYAISLVL 172
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVD 121
TD S + Q + + E + +
Sbjct: 173 KIAMETRQAMTDRQEPATILSDSMSVLQALSNARNKLGQRIIQAVQQSVQELQTQGIPLR 232
Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145
L W+ GH G+ NE DR+A+ A
Sbjct: 233 LQWVPGHCGDLGNEAADRLAKEAM 256
>gi|154284596|ref|XP_001543093.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150406734|gb|EDN02275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 808
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 596 SNWAYNRCHELLRQHNVSLKWAPGHMGIEGNEEADRLAKRAVSS 639
>gi|224102015|ref|XP_002312512.1| predicted protein [Populus trichocarpa]
gi|222852332|gb|EEE89879.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 41/137 (29%), Gaps = 18/137 (13%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G +LR I E TNN E A + + K K+
Sbjct: 184 DGASKGNPGQAGAGAVLRNDDGSLICRLREGLGIATNNMAEYRAILLGMKYALEKGYTKI 243
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS V K +N ++ + H
Sbjct: 244 HVKGDSKLVCMQIEGSWKARHENITNLYEEAKKLKNSFLSFHI--------------SHV 289
Query: 130 GNQENEKVDRIARNAAV 146
+ N + D A A
Sbjct: 290 PREYNSEADSQANLAIK 306
>gi|327182671|gb|AEA31118.1| ribonuclease HI [Lactobacillus amylovorus GRL 1118]
Length = 254
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + G + SGGE TNN+ME A I
Sbjct: 102 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDGGSEDGSGGEYGATNNKMEQTALINAL 160
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + + +KN+ W +
Sbjct: 161 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLQGWKKRGWKRSSGPLKNVPEWKELDRLLQ 220
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
W KGHA N+ NE VD
Sbjct: 221 SFPDSTFEWTKGHANNRGNEYVDHALNRYMDEH 253
>gi|145606833|ref|XP_001407279.1| hypothetical protein MGG_12060 [Magnaporthe oryzae 70-15]
gi|145014471|gb|EDJ99039.1| hypothetical protein MGG_12060 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|67901980|ref|XP_681246.1| hypothetical protein AN7977.2 [Aspergillus nidulans FGSC A4]
gi|40740441|gb|EAA59631.1| hypothetical protein AN7977.2 [Aspergillus nidulans FGSC A4]
gi|259480727|tpe|CBF73635.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 306
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 8 EVHAYTDGACSGNPGPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ Y DG+ + G G G+ + K T E++ A++ L A
Sbjct: 15 QISVYLDGS-RTSQGAGYGYAIYFGPILMSKGHGPAGPRTEVYDAEIIGAVEGLRAALGQ 73
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN-------IDLWMKFVEASAQHK 119
V T V + + T + + + + +
Sbjct: 74 PCVGYST--QLVILLDNLAAASLLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKP 131
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ + WI GH+G NE D++A+
Sbjct: 132 LQVRWIPGHSGIAGNELADKLAKLG 156
>gi|282599285|ref|YP_003358597.1| putative ribonuclease HI [Shigella phage phiSboM-AG3]
gi|226973591|gb|ACO94344.1| putative ribonuclease HI [Shigella phage phiSboM-AG3]
Length = 146
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+++DS Y K ++W KW+ G+ + + +K+ L+ + + +V+L W+KGHAG
Sbjct: 47 IWSDSQYTIKSVTEWRAKWEYQGFPDKNVELIKD--LFRIYDLVCSICEVELKWVKGHAG 104
Query: 131 NQENEKVDRIARNA 144
++ NE D A A
Sbjct: 105 HEGNELADDWATAA 118
>gi|255552696|ref|XP_002517391.1| nuclease, putative [Ricinus communis]
gi|223543402|gb|EEF44933.1| nuclease, putative [Ricinus communis]
Length = 255
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 46/151 (30%), Gaps = 18/151 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA- 62
+ DGA GNPGP G G +LR ++ G TNN E A I L
Sbjct: 112 MSSCILEFDGASKGNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHA 171
Query: 63 -LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K + + DS+ V K QN + +E
Sbjct: 172 LRKGFKHIRVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIE-------- 223
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
H + N + D A A +I
Sbjct: 224 ------HVLREFNSEADTQANLAVNLKDGQI 248
>gi|307775393|ref|NP_057933.2| Pr180 [Moloney murine leukemia virus]
Length = 1737
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1180 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1296
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 1297 QKGHSAEARGNRMADQAARKAA 1318
>gi|300669716|sp|P03355|POL_MLVMS RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
Length = 1738
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1181 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1237
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1238 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1297
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 1298 QKGHSAEARGNRMADQAARKAA 1319
>gi|253682659|ref|ZP_04863456.1| ribonuclease HI [Clostridium botulinum D str. 1873]
gi|253562371|gb|EES91823.1| ribonuclease HI [Clostridium botulinum D str. 1873]
Length = 306
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNR------MELMAAIKALTALKY 65
Y DG+ + N G +G+++ +G K I G E + EL AAI++L
Sbjct: 78 YVDGSYNSNSGKYSYGLVMIEEGVVKYIENGAAENNTGKDIRQIAGELKAAIRSLQYAAE 137
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ YV + ++ +I KV +
Sbjct: 138 NNIKDIVLIHDYVGVCYHATGVWQRREESSKKYYNDFNSIIKENDI-------KVTFVKV 190
Query: 126 KGHAGNQENEKVDRIARNAA 145
H G+ NE VD A+ AA
Sbjct: 191 DSHTGDLYNEMVDEFAKAAA 210
>gi|224163174|ref|XP_002195934.1| PREDICTED: similar to pol protein, partial [Taeniopygia guttata]
Length = 1187
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I SG T+ + + A+ L ++
Sbjct: 657 FTDGSSYVISGKRHAGYAV---TTSREVIESGPLSANTSAQKAEIIALTRALELAKGREI 713
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ ++A KV + IK H
Sbjct: 714 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHSQEILRLLDAVQLPEKVAIMHIKAH 773
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++ A
Sbjct: 774 QKVSSELEEGNMLADREAKDTAK 796
>gi|40796138|ref|NP_955591.1| p80 RT [Moloney murine leukemia virus]
Length = 671
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 521 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 577
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 578 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 637
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 638 QKGHSAEARGNRMADQAARKAA 659
>gi|2801471|gb|AAC82568.1| Pr180 [Moloney murine leukemia virus]
Length = 1737
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1180 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1296
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 1297 QKGHSAEARGNRMADQAARKAA 1318
>gi|223354|prf||0711245A protein gag/pol/env
Length = 2514
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1291 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1347
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1348 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1407
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 1408 QKGHSAEARGNRMADQAARKAA 1429
>gi|145611412|ref|XP_368840.2| hypothetical protein MGG_11586 [Magnaporthe oryzae 70-15]
gi|145018705|gb|EDK02984.1| hypothetical protein MGG_11586 [Magnaporthe oryzae 70-15]
Length = 1023
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 685 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGA 744
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 745 LKGLQAAAKAQPGARIWICVDSTSVIWGLKGDAPRSSQWAF---------LEFHNLVDLL 795
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 796 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 826
>gi|71415924|ref|XP_810011.1| ribonuclease H1 [Trypanosoma cruzi strain CL Brener]
gi|70874481|gb|EAN88160.1| ribonuclease H1, putative [Trypanosoma cruzi]
Length = 323
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 43/177 (24%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS----------GGEKETTNNRMELMAAIK 58
V Y DGAC N G L R + ++ TNNR EL A I
Sbjct: 143 VEVYVDGACRANGK----GKLSRGGYGGYYGANDTRNFSLPIPIDEPQTNNRAELYAVIY 198
Query: 59 ALTAL---KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
L + + +++DS Y +G ++ KW QNG+ ++ TV N DLW
Sbjct: 199 VLRTALEAESCYNLRVFSDSMYTIQGADFYMHKWLQNGFCGTNGSTVLNCDLWKSLNTMR 258
Query: 116 AQHK--------------------------VDLYWIKGHAGNQENEKVDRIARNAAV 146
QH + L ++GHAG NE D +A A+
Sbjct: 259 LQHATRYGEWLVSQFGLLPVVASTLAKKLALQLVHVRGHAGVYGNEMADHLAVMGAL 315
>gi|115418818|emb|CAJ76250.1| polyprotein [Sus scrofa]
Length = 1254
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 932 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 988
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 989 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEKILSLLEAVHLPKRLAIIHCPGH 1048
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 1049 QKAKDLISRGNQMADRVAKQAAQ 1071
>gi|315037367|ref|YP_004030935.1| ribonuclease HI [Lactobacillus amylovorus GRL 1112]
gi|312275500|gb|ADQ58140.1| ribonuclease HI [Lactobacillus amylovorus GRL 1112]
Length = 254
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 12 YTDGACSGNPG-----------PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--- 57
YTDG N G W L+ + G + SGGE TNN+ME A I
Sbjct: 102 YTDGGTR-NTGVYKGGHVKKTDKAAWAYLIEWDGGSEDGSGGEYGATNNKMEQTALINAL 160
Query: 58 -KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
K + +L DS YV +Q + + +KN+ W +
Sbjct: 161 KKLIELGFNEKHLLFVLDSKYVLNAINQHWLQGWKKRGWKRSSGPLKNVPEWKELDRLLQ 220
Query: 117 QH-KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
W KGHA N+ NE VD
Sbjct: 221 SFPDSTFEWTKGHANNRGNEYVDHALNRYMDEH 253
>gi|242804449|ref|XP_002484377.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218717722|gb|EED17143.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 833
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ G G G + + + S + A A
Sbjct: 534 DIVIFSDGS-RLIDGRAGGGYIGFQAHHQFLRSSLSYGHGKEVFDTEAEAALAGAQAAIT 592
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 593 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 652
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA ENE D A+ A S
Sbjct: 653 IRWVPGHAKIPENEAADLAAKEGAAS 678
>gi|121822434|gb|ABM65596.1| pol protein [Sus scrofa]
Length = 1145
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEAVHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 708 QKAKDLISRGNQMADRVAKQAAQ 730
>gi|145605076|ref|XP_001405823.1| hypothetical protein MGG_02068 [Magnaporthe oryzae 70-15]
gi|145012942|gb|EDJ97583.1| hypothetical protein MGG_02068 [Magnaporthe oryzae 70-15]
Length = 1302
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 879 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 938
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 939 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 989
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 990 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1020
>gi|115418812|emb|CAJ76246.1| polyprotein [Sus scrofa]
gi|115418815|emb|CAJ76248.1| polyprotein [Sus scrofa]
Length = 1719
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 1165 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 1221
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 1222 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEAVHLPKRLAIIHCPGH 1281
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 1282 QKAKDLISRGNQMADRVAKQAAQ 1304
>gi|50429163|gb|AAT77167.1| pol protein [Porcine endogenous retrovirus C/A]
Length = 1193
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 640 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 696
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 697 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEAVHLPKRLAIIHCPGH 756
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 757 QKAKDLISRGNQMADRVAKQAAQ 779
>gi|327294333|ref|XP_003231862.1| hypothetical protein TERG_07482 [Trichophyton rubrum CBS 118892]
gi|326465807|gb|EGD91260.1| hypothetical protein TERG_07482 [Trichophyton rubrum CBS 118892]
Length = 226
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 11/155 (7%)
Query: 3 SKHLREVHAYTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ + + DGAC GN + +G S + +
Sbjct: 20 RDNTQPLVISVDGACRGNGREHRDAAAGVFVDQGSRFNESIPLSLDNPSNQKAEILAGIH 79
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ--- 117
+ +DS Y+ KG ++W ++W+ NG++T++ ++V N +L+ + A
Sbjct: 80 GLNMEGTRNGRRSDSEYMVKGVNEWSRRWESNGYRTANGQSVVNRELFQQLSSARDSLER 139
Query: 118 --HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
KV+ + +EN D A A ++ N
Sbjct: 140 SGIKVEFQHVP----REENRDADHWANRAFDNYYN 170
>gi|242787335|ref|XP_002480986.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218721133|gb|EED20552.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 747
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ G G G + + + S + A A
Sbjct: 558 DIVIFSDGS-RLIDGRAGGGYIGFQAHHQFLRSSLSYGHGKEVFDTEAEAALAGAQAAIT 616
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 617 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 676
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA ENE D A+ A S
Sbjct: 677 IRWVPGHAKIPENEAADLAAKEGAAS 702
>gi|258539674|ref|YP_003174173.1| ribonuclease HI [Lactobacillus rhamnosus Lc 705]
gi|257151350|emb|CAR90322.1| Ribonuclease HI [Lactobacillus rhamnosus Lc 705]
Length = 132
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT----ALK 64
+ YTDGA GNPGP G G+L+ ++ +N+ E AAI +
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPQQIQHHAALPAMSNHEAEFAAAIAGFKLLIESSL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + +L E V W
Sbjct: 62 TTGTVAYYSDSKLVIQARGKRY----------AKHYPALTAELLSLIDEFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
I +++N +A+
Sbjct: 109 IP----DRQNRGAHHLAQQG 124
>gi|241567430|ref|XP_002402293.1| conserved hypothetical protein [Ixodes scapularis]
gi|215501983|gb|EEC11477.1| conserved hypothetical protein [Ixodes scapularis]
Length = 345
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTALKYP 66
+H +TDG+ G V + + G+ + ++ TT + ++ L
Sbjct: 67 LHVFTDGSVDPVRGTASAAVFIPHIGRRLAERLTFHASSTTAELAAIETGLRELFPWPPG 126
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V+L + ++ +T D + + + ++ W+
Sbjct: 127 RAVVL------------SDSRTALRHLLRTDDAPPLARSVVSLTLRLRDRGWEIAFQWVP 174
Query: 127 GHAGNQENEKVDRIA 141
H G NE+ D++A
Sbjct: 175 SHCGIPGNEEADKLA 189
>gi|145610438|ref|XP_001410324.1| hypothetical protein MGG_12685 [Magnaporthe oryzae 70-15]
gi|145017722|gb|EDK02085.1| hypothetical protein MGG_12685 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|56675780|emb|CAC82505.2| Pol protein [Porcine endogenous retrovirus]
Length = 1147
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIXASSLPEGTSAQKAELMALTQALRLAEGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN D + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKDEILSLLEALHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAVS 147
++ N+ DRIA+ AA +
Sbjct: 708 QKAKDLISRGNQMADRIAKQAAQA 731
>gi|145609561|ref|XP_367783.2| hypothetical protein MGG_13461 [Magnaporthe oryzae 70-15]
gi|145016916|gb|EDK01346.1| hypothetical protein MGG_13461 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|14275839|emb|CAC39617.1| polymerase [Porcine endogenous retrovirus C]
Length = 1193
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 640 FTDGSSYMVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 696
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 697 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 756
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 757 QKAKDPISRGNQMADRVAKQAAQ 779
>gi|119393852|gb|ABL74442.1| pol protein [Porcine endogenous retrovirus C]
Length = 1144
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLADGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 708 QKAKDPISRGNQMADRVAKQAAQ 730
>gi|229552264|ref|ZP_04440989.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
gi|258508462|ref|YP_003171213.1| ribonuclease HI [Lactobacillus rhamnosus GG]
gi|229314369|gb|EEN80342.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
gi|257148389|emb|CAR87362.1| Ribonuclease HI [Lactobacillus rhamnosus GG]
gi|259649775|dbj|BAI41937.1| putative ribonuclease HI [Lactobacillus rhamnosus GG]
Length = 132
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT----ALK 64
+ YTDGA GNPGP G G+L+ ++ +N+ E AAI +
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPQQIQHHAALPAMSNHEAEFAAAIAGFKLLIESSL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + +L E V W
Sbjct: 62 TTGTVAYYSDSKLVIQAIEKRY----------AKHYPALTAELLSLIDEFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
I +++N +A+
Sbjct: 109 IP----DRQNRGAHHLAQQG 124
>gi|199598377|ref|ZP_03211796.1| Ribonuclease HI [Lactobacillus rhamnosus HN001]
gi|199590696|gb|EDY98783.1| Ribonuclease HI [Lactobacillus rhamnosus HN001]
Length = 132
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT----ALK 64
+ YTDGA GNPGP G G+L+ ++ +N+ E AAI +
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPQQIQHHAALPAMSNHEAEFAAAIAGFKLLIESSL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + +L E V W
Sbjct: 62 TTGTVAYYSDSKLVIQAIEKRY----------AKHYPALTAELLSLIDEFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
I +++N +A+
Sbjct: 109 IP----DRQNRGAHHLAQQG 124
>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]
gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]
Length = 262
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 45/142 (31%), Gaps = 16/142 (11%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPGP G G LLR I E + TNN E A I + +
Sbjct: 126 DGASKGNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGYTKI 185
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIKGHAG 130
+ Q G K + N+ K + + A ++ H
Sbjct: 186 RV-------QGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQI------SHVL 232
Query: 131 NQENEKVDRIARNAAVSFKNKI 152
N + D A A ++
Sbjct: 233 RALNSEADAQANLAIQLADGQV 254
>gi|317506107|ref|ZP_07963932.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
gi|316255606|gb|EFV14851.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
Length = 371
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 22/146 (15%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE-----KIISGGEKETTNNRMELMAAIKAL 60
+R V DG GNPGP +G ++ + TNN E + L
Sbjct: 1 MR-VVVEADGGSRGNPGPAAYGAVVLDSEGSGARVLAQRAERIGRATNNVAEYRGLVAGL 59
Query: 61 TALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A K +V + DS V + S K A
Sbjct: 60 EAAKELGARRVAVRMDSKLVVEQMSGRW----------KIKHEDMRELASRAAALARGFD 109
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V W+ ++N++ D + A
Sbjct: 110 EVSYTWVP----REQNKRADALLNAA 131
>gi|156540664|ref|XP_001602696.1| PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia
vitripennis]
Length = 492
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 7 REVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V YTDG+ + N G G W E+I+ ++ TT + E+ A KA L
Sbjct: 314 NSVVWYTDGSKNENGVGAGAW----EKGDTEEIVCSLDRYTTVFQAEIRAITKAAKWLLE 369
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
S K V ++ + V L W+
Sbjct: 370 RGI------GQRTVSFCSVSRAALMALDSINISSKEVLRCRQALESLAEHNA--VRLVWV 421
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
++G NEK DR+A A + +
Sbjct: 422 PRYSGVVGNEKADRLAGRGADGIRAR 447
>gi|219882597|ref|YP_002477761.1| ribonuclease H [Arthrobacter chlorophenolicus A6]
gi|219861603|gb|ACL41944.1| ribonuclease H [Arthrobacter chlorophenolicus A6]
Length = 314
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 11/147 (7%)
Query: 7 REVHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
R + TD A N G G G ++ ++S G+K +R + + + L
Sbjct: 140 RSMVVSTD-ASIANGGQVAGLGWIIATDDG-TVLSVGQKTADVSRCGDILSGELLAIRWG 197
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW--------MKFVEASAQ 117
V+ +G + ++ + ++
Sbjct: 198 LQSVISRHPVPAQGQGTVIIQSDSRAALRLLKTLGADRHPAGCTIDQVKLARRILDEIGS 257
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
V W+KGH GN+ NE DR+A A
Sbjct: 258 MPVQFRWVKGHQGNEANEAADRLAVLA 284
>gi|145610322|ref|XP_366500.2| hypothetical protein MGG_02576 [Magnaporthe oryzae 70-15]
gi|145017644|gb|EDK02007.1| hypothetical protein MGG_02576 [Magnaporthe oryzae 70-15]
Length = 1294
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 956 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1015
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1016 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1066
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1067 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1097
>gi|145604583|ref|XP_001405475.1| hypothetical protein MGG_13850 [Magnaporthe oryzae 70-15]
gi|145012581|gb|EDJ97235.1| hypothetical protein MGG_13850 [Magnaporthe oryzae 70-15]
Length = 264
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 107 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 166
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 167 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 217
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 218 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 248
>gi|2454622|gb|AAB71689.1| reverse transcriptase [Magnaporthe grisea]
Length = 1295
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAARAASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|308493275|ref|XP_003108827.1| hypothetical protein CRE_11880 [Caenorhabditis remanei]
gi|308247384|gb|EFO91336.1| hypothetical protein CRE_11880 [Caenorhabditis remanei]
Length = 67
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ WI W++ GWKTS V N D+ K + KV ++GHAG NEK D +A
Sbjct: 1 MNTWIHGWKRKGWKTSTGSDVLNRDVLTKIDNLRQKLKVKFVHVRGHAGIDGNEKADELA 60
Query: 142 RNAAVSF 148
R A +
Sbjct: 61 RKGAQMY 67
>gi|290892994|ref|ZP_06555983.1| ribonuclease HI [Listeria monocytogenes FSL J2-071]
gi|290557354|gb|EFD90879.1| ribonuclease HI [Listeria monocytogenes FSL J2-071]
Length = 169
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYPC 67
+ DGA +GNPGP G G++L+ +G + + TN+ E +A K
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAEFIAIKLGLEEAIKKQAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + K +E + ++ +
Sbjct: 62 LIRLYSDSKVAIEAIHKRH------------AKNPLFKPHLEAILEMADSFELFFAEWR- 108
Query: 128 HAGNQENEKVDRIARNA 144
+N++ D +AR A
Sbjct: 109 --NVSQNKQADHLARQA 123
>gi|317031412|ref|XP_003188771.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1653
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 1338 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1395
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 1396 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1455
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 1456 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 1485
>gi|317031356|ref|XP_001393251.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1677
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 1375 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1432
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 1433 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1492
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 1493 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 1522
>gi|317031342|ref|XP_003188764.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1016
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 701 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 758
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 759 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 818
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 819 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 848
>gi|291527963|emb|CBK93549.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Eubacterium rectale M104/1]
Length = 206
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------EL 53
M S +A+ DG+ + G+G L ++ ++ G + + M +
Sbjct: 63 MKSSGENSTYAFVDGSFNKVTHTYGYGGFLVTDYEKYVLQGSDNDAEMATMRNVAGEIKG 122
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
A ++++Y D + + + I +
Sbjct: 123 AEAAVKKAIELGIKELVIYYDYMGIEMWATGTW-----------KRNKAGTIAYHEYIMS 171
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ K+ +KGH+G + NE+ D++A+ A
Sbjct: 172 VRDKIKLTFVKVKGHSGVEGNEEADKLAKQA 202
>gi|134077756|emb|CAK45797.1| unnamed protein product [Aspergillus niger]
Length = 1536
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 1221 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1278
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 1279 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1338
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 1339 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 1368
>gi|134077781|emb|CAK45821.1| unnamed protein product [Aspergillus niger]
Length = 1644
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 1329 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1386
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 1387 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1446
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 1447 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 1476
>gi|134077855|emb|CAK40096.1| unnamed protein product [Aspergillus niger]
Length = 1244
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G + S G + + + EL+ + A+
Sbjct: 929 DLVVYSDAS--GRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 986
Query: 63 LKYPCKVLLY---TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + V + + + L +
Sbjct: 987 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1046
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH+ N+ DR+A+ AA+ K
Sbjct: 1047 IRLQWVPGHSEILGNDAADRLAKEAAIPGK 1076
>gi|311246332|ref|XP_003122160.1| PREDICTED: pro-Pol polyprotein-like [Sus scrofa]
Length = 1144
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 708 QKAKDPISRGNQMADRVAKQAAQ 730
>gi|309811012|ref|ZP_07704810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
gi|308434976|gb|EFP58810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
Length = 414
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKG------KEKIISGGEKETTNNRMELMAAIKAL 60
R + DG GNPG G+G L+R + G E L+ ++A+
Sbjct: 3 RRLIVEADGGSRGNPGVAGYGSLVRDADTGALLAERAAPLGKESNNVAEYTGLIEGLRAV 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V + DS V + S K D K + + +SA V
Sbjct: 63 VDHAPGAAVTVRMDSKLVVEQMSGRW------KIKHEDMKRLAAEAQALAAEISSAGGAV 116
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
WI +N+ D+++ +
Sbjct: 117 TYEWIP----RAKNKDADKLSNDGMD 138
>gi|63054322|gb|AAY28928.1| pol protein [Porcine endogenous retrovirus C/A]
Length = 1145
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G V+ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVV---DGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSI 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 648 NIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGH 707
Query: 129 AG-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 708 QKAKDPISRGNQMADRVAKQAAQ 730
>gi|21105230|gb|AAM34554.1|AF382828_2 pol protein [Simian immunodeficiency virus]
Length = 1010
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ ++ I L A++ +V +
Sbjct: 599 YVDGAANRETRRGKAGYVINNGKQKVISLEETTNQKAELEALRIALQ-----DSGQEVNV 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + E + KV L W+ H G
Sbjct: 654 VTDSQYVLGIINSQPDQSE-------------SEIVNQIIEELIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|2735953|gb|AAB94030.1| reverse transcriptase [Dugesiella sp.]
Length = 743
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 46/146 (31%), Gaps = 7/146 (4%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
DS L YTDG+ S G G V+ R S + + + AI
Sbjct: 480 DSDKLARHQIYTDGSKSE-SGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKAL 538
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V + + Q + D V + + + V
Sbjct: 539 QWLLADGVGIK-----SCAVITDSQSSLQALANPSCDWLLVMRAKAAYRQLLRNGV-AVR 592
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+W KGHA + N+ D AR A+ S
Sbjct: 593 FFWTKGHATCEGNKIADSAAREASAS 618
>gi|300811070|gb|ADK35805.1| pol polyprotein [Equine infectious anemia virus]
Length = 1135
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + + ++ G T R AI+
Sbjct: 609 ITIYTDGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLTDE 721
>gi|154287834|ref|XP_001544712.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408353|gb|EDN03894.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1110
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 901 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 944
>gi|242794525|ref|XP_002482393.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718981|gb|EED18401.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 523
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + + + A++ +
Sbjct: 196 WSDGS-RLDTGRAGAGVTLQAVPKGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQP 254
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + D+ + + A V + W+
Sbjct: 255 LDPIWVLLDAQNAIDRLRSTRPG---------PGQALVLRAHRAVEKLAMRGQPVTIQWV 305
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 306 PGHSGVVGNEQADQAAKRAASK 327
>gi|145604571|ref|XP_361796.2| hypothetical protein MGG_07799 [Magnaporthe oryzae 70-15]
gi|145012574|gb|EDJ97228.1| hypothetical protein MGG_07799 [Magnaporthe oryzae 70-15]
Length = 852
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 705 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 764
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 765 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 815
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 816 EVRVRWCPGHQGIPGNDRADELAKAG 841
>gi|3133302|gb|AAC16764.1| pol protein [Sus scrofa]
Length = 1145
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + + S T+ + ELM A+ L + +
Sbjct: 591 FTDGSSYVVEGKRMAGAAVVDGTRTIWASSLPGGTSAQKAELM-ALTQALRLAEGKSINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 650 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEAVHLPKRLAIIHCPGHQK 709
Query: 131 -----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 710 AKDLISRGNQMADRVAKQAAQ 730
>gi|156065867|ref|XP_001598855.1| hypothetical protein SS1G_00944 [Sclerotinia sclerotiorum 1980]
gi|154691803|gb|EDN91541.1| hypothetical protein SS1G_00944 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 569
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ G G G ++ + T + A A K
Sbjct: 395 DIQIFSDGSKSKSKDGATGGGFVISQFDIQIAHHSFSLGTNTEVFDAEATATIAKAAKAL 454
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHKV 120
+ + + + S ++ + + ++ K+
Sbjct: 455 TLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPYTSSGKI 514
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 515 CVRWVPGHLDIPGNEIADKAAKEG 538
>gi|116334494|ref|YP_796021.1| RNase H [Lactobacillus brevis ATCC 367]
gi|116099841|gb|ABJ64990.1| RNase HI [Lactobacillus brevis ATCC 367]
Length = 264
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 14 DGACSGNPGPGG----------WGVLLRYKGKEKIISGGEKETTNNRMELMA----AIKA 59
DG G W + + S GE +NNRME+MA +
Sbjct: 79 DGGSRNTGNVAGGHVKTGDKAAWAYRIELPDQVVTGSAGEFGASNNRMEIMAFRNALQRL 138
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH- 118
+ K + DS YV +Q + + N +LW Q
Sbjct: 139 VALEKTQESIQFILDSRYVLNAVTQGWLAGWKRRGWRRSAGPLANAELWQDVDRLLPQFS 198
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++ W KGHA NQ N VD +
Sbjct: 199 QLSYQWTKGHATNQGNVFVDHLLNQTMDQM 228
>gi|9631967|ref|NP_048756.1| hypothetical protein PBCV1_A399R [Paramecium bursaria Chlorella
virus 1]
gi|1620071|gb|AAC96767.1| A399R [Paramecium bursaria Chlorella virus 1]
Length = 194
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 8/139 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTD + GG G+ ++G E+ R +
Sbjct: 32 IVYTDASIR--QKKGGIGI-----CSRSSVTGFEQ-WDTFRASVNETKDINRNELGAIFA 83
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ Y N + + + + + + V + +K H+
Sbjct: 84 SISMTDIYSDIVIYSDSLTSINNIVHRTKRNKYDKLSSFTLQLVKERKGNVYISKVKAHS 143
Query: 130 GNQENEKVDRIARNAAVSF 148
GN N D++A++ + S
Sbjct: 144 GNIGNTFADKLAKDGSESI 162
>gi|297190187|ref|ZP_06907585.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
pristinaespiralis ATCC 25486]
gi|297150412|gb|EFH30618.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
pristinaespiralis ATCC 25486]
Length = 156
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 4 KHL-REVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ + + A DGA GNPGP W ++ +G TNN EL A + L
Sbjct: 51 RCMVERIIAACDGASKGNPGPAAWAWVVAGTDGQVATWEAGPLGRATNNVAELTALRELL 110
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQ 90
A + + DS Y K + W+ W+
Sbjct: 111 QATDPVVPLEVRMDSQYAMKAVTTWLPGWR 140
>gi|157311108|ref|YP_001469103.1| gp104 [Lactococcus phage KSY1]
gi|108861448|gb|ABG21647.1| gp104 [Lactococcus phage KSY1]
Length = 147
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 8/145 (5%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK------EKIISGGEKETTNNRMELMAAIKA 59
+R+ Y DG+ + G G L + + S + + +R
Sbjct: 1 MRQWEVYVDGSYNVKTEVYG-GAYLASCAELSEGAFQNSFSANKPDWVGSRNVSGELGAV 59
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ LK ++ L V + + + ++K K +++ V +
Sbjct: 60 ILFLKTNMELSLLESGDEVIFYYDYTGIQKWADDEWKANKVPSKVYKQYIEMVRSKGI-S 118
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ +K H G + NE VD +A+ A
Sbjct: 119 IRFEKVKAHTGVELNETVDNLAKKA 143
>gi|322702335|gb|EFY94003.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 10/145 (6%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++S V Y+DG+ G G+G + + + +G E+ A+
Sbjct: 154 LESVSPLTVIVYSDGS-LSEKGAAGYGFTIHQNGRSLRQGAGRLGPAEVFDAEVRGALDG 212
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L A ++ V + + S + K +
Sbjct: 213 LKAAL---RLPQSASQKIVVCLDNIAAAGCLRGQPSDSSQGVFLAFQALAKR-----HRQ 264
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
D+ WI GH+ NE+ D +A+
Sbjct: 265 TDIRWIPGHSNIAGNEQADVLAKVG 289
>gi|146322556|ref|XP_752368.2| ribonuclease H1 [Aspergillus fumigatus Af293]
gi|129557726|gb|EAL90330.2| ribonuclease H1, putative [Aspergillus fumigatus Af293]
gi|159131123|gb|EDP56236.1| reverse transcriptase, RNaseH, putative [Aspergillus fumigatus
A1163]
Length = 221
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 21/159 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGG---WGVLLRYKGKEKIISGGEKETTNN------RMELM 54
H + DGAC N G +GV + E E + R +
Sbjct: 49 SHNDHIVVAVDGACLKNGQDGARSSYGVFWGHNNVLNTAVPVEGEGNHTNQVAELRACMR 108
Query: 55 AAIKALTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS---DKKTVKN 104
A + + V++ +DS Y+ +G ++W+ KW++NGWK S D ++
Sbjct: 109 ALLDVVHVRSLFEDQGIILSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEH 168
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ E +HK+ + + H + N D +A+
Sbjct: 169 FKAIERLTEDLERHKLTIKFW--HVPRRNNRDADTMAKA 205
>gi|312869910|ref|ZP_07730049.1| ribonuclease HI [Lactobacillus oris PB013-T2-3]
gi|311094495|gb|EFQ52800.1| ribonuclease HI [Lactobacillus oris PB013-T2-3]
Length = 129
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA----IKALTALK 64
+ YTD A GNPGP G G L+ ++ ++ N++ E AA L
Sbjct: 2 IKLYTDAATKGNPGPTGLGALVLADHQQFQLTSTVANCDNHQGEFAAAEFGFHYLLQHFP 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+L YTDS + + K Q + + V W
Sbjct: 62 TAQTILFYTDSRLLSDAIGKNYTKHYQAELDRLNALL-------------NRFPTVVTQW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
I + +N+ +A A S
Sbjct: 109 IP----DAQNQGAHHLANQALQS 127
>gi|239618134|ref|YP_002941456.1| ribonuclease H [Kosmotoga olearia TBF 19.5.1]
gi|239506965|gb|ACR80452.1| ribonuclease H [Kosmotoga olearia TBF 19.5.1]
Length = 139
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTALKYP- 66
Y DG+ N V+L+ +K I G E++ ++R + + AL++
Sbjct: 8 EVYVDGSFF-NDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMKALEWCK 66
Query: 67 ----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ LY D + + K + +D I K+
Sbjct: 67 ENKITSITLYYDYIGIKAWVTGEWKAKKPLTRFYADYVKKSGI-------------KIYW 113
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
+K H+GN N+ VD++A+ +A+
Sbjct: 114 KKVKSHSGNYWNDYVDKLAKKSALE 138
>gi|145607842|ref|XP_365184.2| hypothetical protein MGG_10029 [Magnaporthe oryzae 70-15]
gi|145015338|gb|EDJ99874.1| hypothetical protein MGG_10029 [Magnaporthe oryzae 70-15]
Length = 1148
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 783 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 842
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 843 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 893
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 894 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 924
>gi|145609099|ref|XP_364306.2| hypothetical protein MGG_07374 [Magnaporthe oryzae 70-15]
gi|145016534|gb|EDK00964.1| hypothetical protein MGG_07374 [Magnaporthe oryzae 70-15]
Length = 514
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 176 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 235
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 236 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 286
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 287 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 317
>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1193
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 10/144 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYK-----GKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ ++D + G G + + K+ G + + ELMA A++ +
Sbjct: 881 ITVFSDAS--GQQNVLGAAAVALDQNQHIIQHRKVCIGSMEYWSVYAAELMAIYYAISLV 938
Query: 64 KYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKV 120
S + Q + + E + +
Sbjct: 939 LKIALENWDTTASQQEPATILSDSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPL 998
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
L W+ GH G+ NE DR+A+ A
Sbjct: 999 RLQWVPGHCGDPGNEAADRLAKEA 1022
>gi|296087711|emb|CBI34967.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G +LR + G TNN E A I + K ++
Sbjct: 153 DGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILGMKYALKKGIKRI 212
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
DS V F Q WKT ++ + + + +++ H
Sbjct: 213 RARGDSQLVCMQF--------QGLWKTKNQNMADLCEEAKELGKKFLSFQIE------HV 258
Query: 130 GNQENEKVDRIARNAAV 146
+ N + D A A
Sbjct: 259 LREFNSEADAQANLAVN 275
>gi|49887134|gb|AAT68811.1| pol protein [Simian immunodeficiency virus]
Length = 1040
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + K + TTN + EL A + AL +V +
Sbjct: 635 YVDGAANRNSKEGQAGYI---TDRGKQTLKRLENTTNQKAELEAVLMALQDSGP--EVNI 689
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y TS + V + +A + K+ + W+ H G
Sbjct: 690 VTDSQYA---------LGILMNCPTSSEHPVVEQIMQ----KAMEKEKIYITWVPAHKGI 736
Query: 132 QENEKVDRIARNAAVSF 148
N++VD++
Sbjct: 737 GGNQEVDQLVSKGIRKI 753
>gi|3309125|gb|AAC31805.1| pol polyprotein [Mus dunni endogenous virus]
Length = 1203
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V+ GK+ I + E T+ + + A+ +
Sbjct: 638 YTDGSSFLIEGKRRAGAAVV---DGKKVIWASALPEGTSAQKAELIALTQALREAEGKII 694
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y ++Q G TS K +KN + + +EA KV + GH
Sbjct: 695 NIYTDSRYAFATAHIHGAIYRQRGLLTSAGKDIKNKEEILALLEAIHAPKKVAIIHCPGH 754
Query: 129 AGNQ-----ENEKVDRIARNAAV 146
+ N D +A+ A
Sbjct: 755 QKGEDLVAKGNRMADSVAKQVAQ 777
>gi|225452547|ref|XP_002280233.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 288
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G +LR + G TNN E A I + K ++
Sbjct: 154 DGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILGMKYALKKGIKRI 213
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
DS V F Q WKT ++ + + + +++ H
Sbjct: 214 RARGDSQLVCMQF--------QGLWKTKNQNMADLCEEAKELGKKFLSFQIE------HV 259
Query: 130 GNQENEKVDRIARNAAV 146
+ N + D A A
Sbjct: 260 LREFNSEADAQANLAVN 276
>gi|331240525|ref|XP_003332913.1| hypothetical protein PGTG_14072 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309311903|gb|EFP88494.1| hypothetical protein PGTG_14072 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 339
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 3/140 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ ++DG+ + G G V + GG +N+ E + AL
Sbjct: 66 TISIFSDGSFHPDKGGAGAAVCPDKGVFSSLFLGGNAIVSNHESEAAGVLAALGLASVLT 125
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V TD+ + + N + A V W G
Sbjct: 126 EV---TDTRRILILVDNQGVLKRLNDPLAPKPGQKLFEQIHKGLSLLPAHLNVTFAWCPG 182
Query: 128 HAGNQENEKVDRIARNAAVS 147
H NE D +A++A S
Sbjct: 183 HRDIMGNEMADTLAKDALES 202
>gi|238853221|ref|ZP_04643607.1| ribonuclease HI [Lactobacillus gasseri 202-4]
gi|282852430|ref|ZP_06261772.1| ribonuclease HI [Lactobacillus gasseri 224-1]
gi|238834196|gb|EEQ26447.1| ribonuclease HI [Lactobacillus gasseri 202-4]
gi|282556172|gb|EFB61792.1| ribonuclease HI [Lactobacillus gasseri 224-1]
Length = 143
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 23 PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI----KALTALKYPCKVLLYTDSSYV 78
W L+ ++G SGGE TNN+MEL+ I K L +L DS YV
Sbjct: 12 KAAWAYLIEWQGGRTYGSGGEFGATNNKMELLGLINALEKLLELKFNDKHLLFVLDSQYV 71
Query: 79 HKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGHAGNQENEKV 137
G ++ + + + N W K W KGHA N+ N V
Sbjct: 72 LNGINKHWIEGWKKRGWKRANGPLINASEWKKLDSLLGHFSDSTFSWTKGHADNEGNVFV 131
Query: 138 DRIARNAAVSFK 149
D K
Sbjct: 132 DHELNRYMDKMK 143
>gi|242759838|ref|XP_002339867.1| hypothetical protein TSTA_059780 [Talaromyces stipitatus ATCC
10500]
gi|218723063|gb|EED22480.1| hypothetical protein TSTA_059780 [Talaromyces stipitatus ATCC
10500]
Length = 617
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 7/151 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALTALKY 65
++ ++DG+ N GG G + + + S E AA+ A
Sbjct: 398 DIVVFSDGSRLVNGHAGG-GYVTFQAYHQFLRSSLSYGHGKEVFDAEAEAALDGAQAAIA 456
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK----VD 121
T+ + + + + + H +
Sbjct: 457 YPTARFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 516
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ W GHA N ENE D A+ A S + +
Sbjct: 517 IRWAPGHAKNPENEAADLAAKEGAASIPSSL 547
>gi|322488263|emb|CBZ23508.1| putative ribonuclease H1 [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 250
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 69/219 (31%), Gaps = 78/219 (35%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTAL 63
Y DGACS N G+G + S TNNR E+ I A+
Sbjct: 32 VVYVDGACSHNGTAQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRGVIHAIVQA 91
Query: 64 KYPC----------------------------KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
+++YTDS YV G +++ KKW QNG+
Sbjct: 92 FVDGGAPADALGATHLVDPSAWPLGDLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFM 151
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK------------------------------------ 119
S + V+N DLW + + ++
Sbjct: 152 LSTNEPVQNQDLWRQLIRLRDRYNTVYARQQHDQQRARQWGDGDHREADLAEPVRYTCQN 211
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V+L ++GH+ NE D +A + K+
Sbjct: 212 TRNDESEGVELIHVRGHSKVHGNEMADSLAVMGSRLHKS 250
>gi|242775769|ref|XP_002478706.1| hypothetical protein TSTA_089820 [Talaromyces stipitatus ATCC
10500]
gi|218722325|gb|EED21743.1| hypothetical protein TSTA_089820 [Talaromyces stipitatus ATCC
10500]
Length = 317
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 12 YTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++DG+ + G G GV L+ ++ E + G + M + A++ +
Sbjct: 159 WSDGS-RLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQP 217
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ ++ D+ + + + A V + W+
Sbjct: 218 LGPIWVFLDAQNAIDRLRSTRP---------APGQALVLRAHRAVEKLAMRDQLVTIQWV 268
Query: 126 KGHAGNQENEKVDRIARNAAVS 147
GH+G NE+ D+ A+ AA
Sbjct: 269 PGHSGVVGNEQTDQAAKRAASK 290
>gi|302817304|ref|XP_002990328.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
gi|302825346|ref|XP_002994296.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300137827|gb|EFJ04640.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300141890|gb|EFJ08597.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
Length = 131
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G LLR I G TNN E A I L A + +
Sbjct: 2 DGASKGNPGKAGAGALLRNPKGSVIEKLYMGLGTATNNVAEYEALILGLQAALDRNVTSI 61
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS+ V K + + + ++ + H
Sbjct: 62 QVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIH--------------HV 107
Query: 130 GNQENEKVDRIARNAAV 146
+ N + D +A
Sbjct: 108 DREMNTEADALANKGIT 124
>gi|255940952|ref|XP_002561245.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585868|emb|CAP93597.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1513
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
++ Y+D + G G G ++ + E G + + EL+ A+
Sbjct: 1200 DLIVYSDAS--GRKGHLGAAIVTLNENDEVTEFQQIQVGPMDRWSVHVAELIGIFYAVNM 1257
Query: 63 LK--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-K 119
+ + ++ + Q + + E ++ K
Sbjct: 1258 VFKLFHQRLNTVNRVPVIATILCDSKSALQAIQNVKNKSGQRIVHAILQAATEVQGENIK 1317
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L W+ GH N+ N+ DR+A+ AA K
Sbjct: 1318 LRLQWMPGHCENRGNDTADRLAKEAAQPGK 1347
>gi|149209443|ref|XP_001522096.1| hypothetical protein MG09042.4 [Magnaporthe oryzae 70-15]
Length = 1006
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 684 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 743
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 744 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 794
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 795 RKQSTEVRVRWCPGHQGIPGNDRADELAKAG 825
>gi|242760200|ref|XP_002339941.1| hypothetical protein TSTA_060470 [Talaromyces stipitatus ATCC
10500]
gi|218723137|gb|EED22554.1| hypothetical protein TSTA_060470 [Talaromyces stipitatus ATCC
10500]
Length = 356
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
L +++ P + +YTD+ + Q + + +
Sbjct: 76 AALEILLRSQPCDDNPHEATIYTDNQAAIRAMCQPGRSS-------GQYILRRIVRHLGL 128
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ ++ +V L W+ GH G NEK D++A+ AA
Sbjct: 129 LRDNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAA 163
>gi|306820999|ref|ZP_07454618.1| ribonuclease HI [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304550940|gb|EFM38912.1| ribonuclease HI [Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 218
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 4/146 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
E+ AY DG+ G ++ Y G+ + + + M ++
Sbjct: 76 DEMLAYVDGSYDNEIKYFSSGGIMFYNGESESFKFASNDESLITMRNVSGEIKAAMFVIQ 135
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
V + S ++ ++ + + +E + + ++
Sbjct: 136 KAVDMKMKSVTIYYDYNG----IEMWANGSWKTNNHLTKAYREFCIEMYKKLDIHFVKVE 191
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
H + NE VD++A+ A + +
Sbjct: 192 SHTNIKYNELVDKLAKKAIDEVRESL 217
>gi|555799|gb|AAB09310.1| polymerase [Feline immunodeficiency virus]
Length = 1123
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ G GK E E +N + E+ A + AL A ++
Sbjct: 598 YIDGS--RKQGKAARAAYWTDTGK---WQIMEIEGSNQKAEVQALLLALKAGSEEMNII- 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ +Q + E + + + W+ GH G
Sbjct: 652 -TDSQYILNIINQQPDLMEGL--------------WQEVLEEMEKKIAIFIDWVPGHKGI 696
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 697 PGNEEVDKL 705
>gi|154273475|ref|XP_001537589.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415197|gb|EDN10550.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 307
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 18 SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT-ALKYPCKVLLYTDSS 76
N G+G ++ K+ ++ + A + DSS
Sbjct: 7 LDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDAEAVGACRALECAVKLLPCVTEDSS 66
Query: 77 YVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEK 136
++ + + + + QH V L W GH G + NE+
Sbjct: 67 NPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QHNVGLKWAPGHMGIEGNEE 123
Query: 137 VDRIARNAAVS 147
D +A+ A S
Sbjct: 124 ADPLAKRAVSS 134
>gi|327294335|ref|XP_003231863.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
gi|326465808|gb|EGD91261.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
Length = 220
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 5 HLREVHAYTDGACSGNPG---PGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAI 57
+LR + DGAC N GV + Y ++ S + +
Sbjct: 63 NLRSIIIAVDGACRENGATAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGL 122
Query: 58 KALTALKYP-------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
A + +V++ TDS+Y+ G +QW+ +W+ NG+ +D + V N L+ +
Sbjct: 123 DAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKE 182
Query: 111 FVEASAQHKVDLYWIK---GHAGNQENEKVDRIARNA 144
+ ++ + +K + + N + D++AR+A
Sbjct: 183 L--SWRVRELAEFHVKVYFWNVRREHNREADQLARDA 217
>gi|288556831|ref|YP_003428766.1| hypothetical protein BpOF4_19175 [Bacillus pseudofirmus OF4]
gi|288547991|gb|ADC51874.1| hypothetical protein BpOF4_19175 [Bacillus pseudofirmus OF4]
Length = 220
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME---------LMAA 56
++V Y DG G G+++ + +K E + +A
Sbjct: 72 PQDVRIYVDGGFDKKSKLAGLGIVIYFTQHKKNWRIRRNEQIEYIADNNEAELAAMHLAL 131
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ Y+DS S ++ + K E
Sbjct: 132 QMLEEEEVRHQTITFYSDSQVAVNQASGEWPSYEDHYN-----------LWLNKIDELKQ 180
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ K+ +I +EN++ D++A A
Sbjct: 181 KLKLTCEFI--QIDRKENKEADQLANQA 206
>gi|259507750|ref|ZP_05750650.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
gi|259164543|gb|EEW49097.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
Length = 391
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ + DG GNPG G G ++ + +E+I+ +TNN E I+ L
Sbjct: 1 MK-LIIEADGGSRGNPGVAGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLR 59
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ +V ++ DS V + S K A +
Sbjct: 60 VARELGATEVEVFMDSKLVVEQMSGRW----------KIKHPDMKTLAMEARNLAGDIGR 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V WI ++N+ D ++ A +
Sbjct: 110 VTYTWIP----REKNKAADHLSNVAMDAA 134
>gi|300780762|ref|ZP_07090616.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
gi|300532469|gb|EFK53530.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
Length = 383
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE---KETTNNRMELMAAIKALT- 61
++ V YTDG GNPG G G +L + K+++NN E ++ L
Sbjct: 1 MK-VTLYTDGGSRGNPGVAGSGSVLYDASGATLAEIAYVVGKKSSNNVAEYCGLLRGLEA 59
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V ++ DS V + + K + A+ V
Sbjct: 60 ARDLGATDVDVFMDSKLVVEQMAGRW----------KIKHPDMKKLAFEARDLAAGFDSV 109
Query: 121 DLYWIKGHAGNQENEKVDRIAR 142
W+ +N+K D ++
Sbjct: 110 TYTWVP----RAKNKKADELSN 127
>gi|25028689|ref|NP_738743.1| bifunctional RNase H/acid phosphatase [Corynebacterium efficiens
YS-314]
gi|23493975|dbj|BAC18943.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 435
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ + DG GNPG G G ++ + +E+I+ +TNN E I+ L
Sbjct: 45 MK-LIIEADGGSRGNPGVAGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLR 103
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ +V ++ DS V + S K A +
Sbjct: 104 VARELGATEVEVFMDSKLVVEQMSGRW----------KIKHPDMKTLAMEARNLAGDIGR 153
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V WI ++N+ D ++ A +
Sbjct: 154 VTYTWIP----REKNKAADHLSNVAMDAA 178
>gi|291524537|emb|CBK90124.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Eubacterium rectale DSM 17629]
Length = 206
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRM-------EL 53
M S +A+ DG+ + G+G L ++ ++ G + + M +
Sbjct: 63 MKSSGENSTYAFVDGSFNKATHTYGYGGFLVTDNEKYVLQGADNDAEMATMRNVAGEIKG 122
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
A ++++Y D + + + + +
Sbjct: 123 AEAAVKKAIELGVKELVIYYDYKGIEMWATGDWNRNKAGTI-----------AYHEYIMS 171
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ K+ +KGH+G + NE+ D++A+ A
Sbjct: 172 VRDKIKLTFVKVKGHSGVEGNEEADKLAKQA 202
>gi|294947382|ref|XP_002785360.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239899133|gb|EER17156.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1627
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDG+ G+ G + + + E+ E+ T ++ EL A +AL L +
Sbjct: 1349 IYTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSHS---- 1404
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ ++ SQ + + T ++I V +V L W GH G
Sbjct: 1405 AHRGIEWLLFTDSQASIRTIRGREATERSAIARDIAHLGLHV------QVQLNWCPGHEG 1458
Query: 131 NQENEKVDRIARNAAVSF 148
Q NE VD++A
Sbjct: 1459 VQWNEAVDQLANTGRKQL 1476
>gi|313762332|gb|ADR80026.1| putative gag-pro-pol polyprotein [Murine leukemia virus N417]
Length = 1734
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA
Sbjct: 1297 QKGDSAEARGNRMADQAAREAATK 1320
>gi|224172158|ref|XP_002199375.1| PREDICTED: similar to polyprotein [Taeniopygia guttata]
Length = 1397
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I SG T+ + + A+ L ++
Sbjct: 853 FTDGSSYVISGKRHAGYAV---TTSREVIESGPLSANTSAQKAEIIALTRALELAKGREI 909
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIKGH 128
+YTDS Y W++ G S K +K++ ++ + KV + IK H
Sbjct: 910 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHLQEILRLLVAVQLPEKVAIMHIKAH 969
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++ A
Sbjct: 970 QKVSSELEEGNMLADREAKDTAK 992
>gi|156036082|ref|XP_001586152.1| hypothetical protein SS1G_12727 [Sclerotinia sclerotiorum 1980]
gi|154698135|gb|EDN97873.1| hypothetical protein SS1G_12727 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 341
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLL-RYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
++ ++DG+ G G G ++ ++ + S E MAA+
Sbjct: 75 DIQIFSDGSKSESKDGATGGGFVITQFDIQVAQYSFSLGTNAEVFDAEAMAAVTGTAKAL 134
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
+ L TD + ++ + H K+
Sbjct: 135 ALPSIKLATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLKQAWAARPRLPHIPPGKI 194
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
++W+ GH +NE D+ + A
Sbjct: 195 RIHWVPGHLNIPDNEIADKATKEGAK 220
>gi|56713260|gb|AAW23357.1| ribonuclease HI [Leishmania major]
Length = 381
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 78/219 (35%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTAL 63
Y DGACS N G+G + S TNNR E+ A I A+
Sbjct: 163 VVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 222
Query: 64 KYPC----------------------------KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
+++YTDS YV G +++ KKW QNG+
Sbjct: 223 FVDAGAPADALEATHLVDPSAWRLVDLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFV 282
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK------------------------------------ 119
S + V+N DLW + + ++
Sbjct: 283 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRACQWGDGHHSEADLAQLVRYTCQN 342
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V+L ++GH+ NE D +A + ++
Sbjct: 343 ARNDKSEGVELIHVRGHSKVHGNEMADSLAVMGSRLHRS 381
>gi|302503384|ref|XP_003013652.1| ribonuclease H1, putative [Arthroderma benhamiae CBS 112371]
gi|291177217|gb|EFE33012.1| ribonuclease H1, putative [Arthroderma benhamiae CBS 112371]
Length = 262
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAI 57
+ + + DGAC GN GV + + +N + E++A I
Sbjct: 19 RHGNTQPLVISVDGACRGNGREHRDASAGVFVDQGSRFNESIPLNLDNPSNQKAEILAGI 78
Query: 58 KALTALKYPC-----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L + V + +DS Y+ KG ++W ++W+ NG++ ++ + V N +L+ +
Sbjct: 79 HGLNKAREMDGGPSRHVTIRSDSEYMVKGVNEWSRRWESNGYRAANGQPVVNRELFQQLN 138
Query: 113 EASAQ-----HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
A KVD + +EN D A A ++ NK
Sbjct: 139 SARDSLERSGIKVDFQHVP----REENRDADHWASQAFDNYHNK 178
>gi|224171008|ref|XP_002199481.1| PREDICTED: similar to Gag-Pol polyprotein, partial [Taeniopygia
guttata]
Length = 1174
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ G G+ V +E I SG T+ + + A+ L ++
Sbjct: 630 FTDGSSYVISGKRHAGYAV---TTSREVIESGLLSANTSAQKGEIIALTRALELAKGREI 686
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y W++ G S K +K+ ++ + A KV + IK H
Sbjct: 687 NIYTDSRYAFGVVHAHGAIWKERGLLNSQGKNIKHSQEILRLLAAVQLPEKVAIMHIKAH 746
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N DR A++ A
Sbjct: 747 QKVSSELEEGNMLADREAKDTAK 769
>gi|22947832|gb|AAN08116.1| pol protein [Bovine foamy virus]
Length = 1220
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDG+ +P P G G++ + + + +AA +
Sbjct: 596 YTDGSAIRSPKPNKTHSAGMGIIQAKFEPDFRIVHLWSFPLGDHTAQYAEIAAFEFAIRR 655
Query: 64 K--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
VL+ TDS+YV K +++ + W+ NG+ + KKT+K+I W E +
Sbjct: 656 ATGIRGPVLIVTDSNYVAKSYNEELPYWESNGFVNNKKKTLKHISKWKAIAECKNLKADI 715
Query: 121 DLYWIKGHAGNQ------ENEKVDRIARNA 144
+ GH + N D+ A +
Sbjct: 716 HVIHEPGHQPAEASPHAQGNALADKQAVSG 745
>gi|9629646|ref|NP_044929.1| pol polyprotein [Bovine foamy virus]
gi|2352039|gb|AAB68770.1| pol polyprotein [Bovine foamy virus]
Length = 1220
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
YTDG+ +P P G G++ + + + +AA +
Sbjct: 596 YTDGSAIRSPKPNKTHSAGMGIIQAKFEPDFRIVHLWSFPLGDHTAQYAEIAAFEFAIRR 655
Query: 64 K--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
VL+ TDS+YV K +++ + W+ NG+ + KKT+K+I W E +
Sbjct: 656 ATGIRGPVLIVTDSNYVAKSYNEELPYWESNGFVNNKKKTLKHISKWKAIAECKNLKADI 715
Query: 121 DLYWIKGHAGNQ------ENEKVDRIARNA 144
+ GH + N D+ A +
Sbjct: 716 HVIHEPGHQPAEASPHAQGNALADKQAVSG 745
>gi|145604727|ref|XP_001405565.1| hypothetical protein MGG_13890 [Magnaporthe oryzae 70-15]
gi|145012671|gb|EDJ97325.1| hypothetical protein MGG_13890 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|327197766|ref|YP_004301464.1| gp131 [Brochothrix phage A9]
gi|299810366|gb|ADJ53165.1| gp131 [Brochothrix phage A9]
Length = 138
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
AYTDG+ + V++ + + + K ++ A + A+ L
Sbjct: 3 AYTDGSNIKDEAYSFACVIVDEETDTVVHTMSVKYEDEHKALRNVAGEVKGAIYALSYAL 62
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ + + W W+ + ++ + + +V +K HAG
Sbjct: 63 SNNYPAIEIRHDYTGVYHWAVKEWRAKQPLPIMYQQIYAGVSD---KLEVTFTKVKAHAG 119
Query: 131 NQENEKVDRIARNA 144
++ NE D++A+ A
Sbjct: 120 DKYNEMADQLAKEA 133
>gi|298705061|emb|CBJ28520.1| ribonuclease HI [Ectocarpus siliculosus]
Length = 355
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 43/146 (29%), Gaps = 13/146 (8%)
Query: 14 DGACSGNPGPGGWGVLLR----YKGKEKIISGGEK-------ETTNNRMELMAAIKALTA 62
DG GNPGP G G +L +E++ S R + I A
Sbjct: 189 DGGSRGNPGPSGCGAVLYRLDESGEREEVWSSSVWIGEKRTNNEAEYRGLIEGLIAAEKL 248
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV--EASAQHKV 120
V + + K+ + + M+ + EA+ K
Sbjct: 249 GIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQPLFREATTISKA 308
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAV 146
GH NE+ D +A A
Sbjct: 309 FDALELGHIMRAHNERADDLANIAMD 334
>gi|242805424|ref|XP_002484526.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715151|gb|EED14573.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 806
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ G G G + + + S + A A
Sbjct: 507 DIVIFSDGS-RLIDGRAGGGYIGFQAHHQFLRSSLSYGHGKEVFDTEAEAALAGAQAAIA 565
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 566 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 625
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GH +NE D A+ AVS
Sbjct: 626 IRWVPGHTKIPKNEAADLAAKEGAVSI 652
>gi|327391639|gb|AEA72809.1| putative gag-pol polyprotein [XMRV-like mouse endogenous retrovirus
mERV-XL]
Length = 1737
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSYLHEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR AA+
Sbjct: 1296 QRGNSAEARGNRMADQAAREAAL 1318
>gi|317968188|ref|ZP_07969578.1| ribonuclease HI [Synechococcus sp. CB0205]
Length = 224
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 32 YKGKEKIISGGEKETTNNRMELMAAI---KALTALKYPCKVLLYTDSSYVHKGFSQWIKK 88
G + G E TTNNRMEL AA+ + L L + + TDS Y+ GFS+WI
Sbjct: 5 DDGSVQEFGGAEANTTNNRMELTAALTLLERLAVLPRHPDLSIRTDSKYLIDGFSKWING 64
Query: 89 WQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
W++ GW+T+ V + ++ + + L ++KGH+G+ +N++ D IA
Sbjct: 65 WKRKGWRTASGSPV-LNRDLWEALDGARIQGLPLTYVKGHSGDPDNDRCDVIAVA 118
>gi|156548458|ref|XP_001605165.1| PREDICTED: similar to myosin-rhogap protein, myr [Nasonia
vitripennis]
Length = 2292
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 17/136 (12%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDG+ + G G Y + + LT + ++
Sbjct: 2022 YTDGSRAETDTGSG-------YFCQRDGRGIFFSLWRYATVFQTEIYAILTCAQRNIELG 2074
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
D SQ + + TS L ++ E +KV L W+ GH G
Sbjct: 2075 AR-DRIITICSDSQAALRALRAHRTTS--------RLVWEYKEVVNNNKVRLLWVPGHTG 2125
Query: 131 NQENEKVDRIARNAAV 146
+ NE DR+A A
Sbjct: 2126 IRGNEIADRLAALGAK 2141
>gi|145612817|ref|XP_001412397.1| hypothetical protein MGG_12437 [Magnaporthe oryzae 70-15]
gi|145019930|gb|EDK04158.1| hypothetical protein MGG_12437 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|157952851|ref|YP_001497743.1| hypothetical protein NY2A_B547R [Paramecium bursaria Chlorella
virus NY2A]
gi|155123078|gb|ABT14946.1| hypothetical protein NY2A_B547R [Paramecium bursaria Chlorella
virus NY2A]
Length = 193
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTD + GG G+ R R + + +
Sbjct: 31 VVYTDASIR--QKKGGIGICSRSSIT------NFDYWDTFRASVNETKDINRSELGAIFM 82
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + N + + K + + + +V + +K H+
Sbjct: 83 GIYISDVHSDVVIYSDSLTSIDNMVRRTKKTKYDKLASITLQLARERKGEVYISKVKAHS 142
Query: 130 GNQENEKVDRIARNAAVS 147
GN N D++A++ S
Sbjct: 143 GNIGNTHADKLAKDGTDS 160
>gi|295683915|gb|ADG27337.1| truncated pol protein [Porcine endogenous retrovirus]
Length = 976
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G GV + + S + T+ + ELM A+ L + +
Sbjct: 591 FTDGSSYVVEGKRMAGVAVVDGTRTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 650 YTDSRYAFVTAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 709
Query: 131 -----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 710 AKDLISRGNQMADRVAKQAAQ 730
>gi|294889789|ref|XP_002772958.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877569|gb|EER04774.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 382
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDG+ G+ G + + + E+ E+ T ++ EL A +AL L Y
Sbjct: 196 IYTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYS---- 251
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ ++ SQ + + T ++I V KV L W GH G
Sbjct: 252 AHRGIEWLLFTDSQASIRTIRGREATERSAIARDIAHLSLHV------KVQLNWCPGHEG 305
Query: 131 NQENEKVDRIARNAAVSF 148
Q NE VD++A
Sbjct: 306 VQWNEAVDQLANTGRKQL 323
>gi|145606546|ref|XP_365561.2| hypothetical protein MGG_11983 [Magnaporthe oryzae 70-15]
gi|145014174|gb|EDJ98815.1| hypothetical protein MGG_11983 [Magnaporthe oryzae 70-15]
Length = 1295
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1068 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 1098
>gi|19422007|gb|AAL87856.1|AF435967_2 pol protein [porcine endogenous retrovirus]
Length = 1142
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)
Query: 12 YTDGAC---SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+TDG+ GN G V+ I E T+++ + + L
Sbjct: 589 FTDGSSYLVEGN-KMAGAAVV---DRTPTIWGTNLPERTSSQKGELIGLMQAFRLGQGKS 644
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKG 127
+ +YTDS Y + Q G TS + +KN + + +EA ++ + G
Sbjct: 645 INIYTDSRYAFATAHVHGAIYTQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPG 704
Query: 128 HAG-----NQENEKVDRIARNAAV 146
H ++ N+ DR+A+ AA
Sbjct: 705 HQKAKDPISRGNQMADRVAKQAAQ 728
>gi|254774920|ref|ZP_05216436.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 383
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + A ++
Sbjct: 60 ALKLGATEAEVYLD-------SKLLVEQMSGRWKVKHPDLIELHAQARGLAARFD-RISY 111
Query: 123 YWIKGHAGNQENEKVDRI 140
WI + N DR+
Sbjct: 112 SWIP----RERNSHADRL 125
>gi|118466196|ref|YP_881419.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium 104]
gi|118167483|gb|ABK68380.1| phosphoglycerate mutase [Mycobacterium avium 104]
Length = 383
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E I L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + A ++
Sbjct: 60 ALKLGATEAEVYLD-------SKLLVEQMSGRWKVKHPDLIELHAQARGLAARFD-RISY 111
Query: 123 YWIKGHAGNQENEKVDRI 140
WI + N DR+
Sbjct: 112 SWIP----RERNSHADRL 125
>gi|242825554|ref|XP_002488465.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712283|gb|EED11709.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 327
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 18/147 (12%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ S ++ Y+D + N GG G + + + +
Sbjct: 44 LQSIPNNDIIIYSDESKLENGQTGG-GYV----------GFQAGSQFLLKAAMTHSTAQC 92
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + C L + ++ + + + V
Sbjct: 93 SPNLWICLDNLEVAIQLLSLSIGSSQAVFESFNTLAAT-------WPSRRRLLQIESGAV 145
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA NE D A+ A
Sbjct: 146 RIRWVPGHANIPGNEAADCAAKEGAGK 172
>gi|400821|sp|P31792|POL_FENV1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
gi|4490388|emb|CAB38566.1| polyprotein [Felis silvestris]
Length = 1046
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 498 YTDGSSYIDSGTRRAGAAVV---DGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKA 554
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A KV + GH
Sbjct: 555 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPRKVAIIHCPGH 614
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + D++AR AV+
Sbjct: 615 QKGQDPIATGNRQADQVARQVAVA 638
>gi|300811132|gb|ADK35858.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G G + GK K ++ AI+
Sbjct: 609 ITIYTDG---GKQNEEGVTAYVTSNGKTKQKR---LRPVTHQTAEKIAIQMTLEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIITDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G +N+ D
Sbjct: 711 KGIYDNQLADE 721
>gi|242827316|ref|XP_002488808.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712064|gb|EED11492.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 290
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 58 DIVIFSDGSRLADGRAGG-GYIRLQAHHQFLRSSLSYRHGKEVFDAEAEAALAGAQAAIA 116
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 117 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 176
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA ENE D A+ A S
Sbjct: 177 IRWVPGHAKIPENEAADLTAKEGAAS 202
>gi|145606466|ref|XP_365614.2| hypothetical protein MGG_11959 [Magnaporthe oryzae 70-15]
gi|145014113|gb|EDJ98754.1| hypothetical protein MGG_11959 [Magnaporthe oryzae 70-15]
Length = 226
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALRGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|44890289|gb|AAH66867.1| Unknown (protein for MGC:76738) [Mus musculus]
Length = 690
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 95 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 151
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y K +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 152 NVYTDSRYAFATAHVHGKIYRRRGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGH 211
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N+ D+ AR AA+
Sbjct: 212 QKGNSAEARGNQMADQAAREAAM 234
>gi|34391481|gb|AAN46639.1| truncated pol/envelope fusion protein [Mus musculus]
Length = 690
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 95 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 151
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y K +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 152 NVYTDSRYAFATAHVHGKIYRRRGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGH 211
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N+ D+ AR AA+
Sbjct: 212 QKGNSAEARGNQMADQAAREAAM 234
>gi|90409437|ref|ZP_01217503.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
gi|90309457|gb|EAS37676.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
Length = 776
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 11/136 (8%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ S G+GV +G + A + +
Sbjct: 634 YTDGSSSEEGT--GFGVF-------SETTGAFFKLRQPCTVFTA--ELAAIFYALLLIAA 682
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
Y S + + + + + ++ L W+ H G
Sbjct: 683 SPPDQYFIFTDSLSAIEALKTPRAVKSQDFFIVKIIELLGSLFDKAFRISLIWVPSHCGI 742
Query: 132 QENEKVDRIARNAAVS 147
NEK D +A+
Sbjct: 743 PGNEKADSLAKTGVKE 758
>gi|306482055|dbj|BAJ16549.1| Gag-Pol precursor polyprotein [RD114 retrovirus]
Length = 1740
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 1192 YTDGSSYIDSGTRRAGAAVV---DGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKA 1248
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A +V + GH
Sbjct: 1249 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPRRVAIIHCPGH 1308
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + D++AR AV+
Sbjct: 1309 QKGQDPIATGNRQADQVARQVAVA 1332
>gi|293324760|emb|CBL51472.1| gag-pro-pol polyprotein [Xenotropic MuLV-related virus 22Rv1]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|262192788|gb|ACY30458.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|242826860|ref|XP_002488718.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712110|gb|EED11537.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 586
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
L +++ + +YTD+ + Q + + +
Sbjct: 353 AALEILLRSQPRNDNLHEATIYTDNQAAIRATCQSERSS-------GQYILRRIVRHLGL 405
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
++ +V L W+ GH G NEK D++A+ AA
Sbjct: 406 LRNNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAA 440
>gi|157939613|ref|YP_001497148.1| gag-pol precursor polyprotein [RD114 retrovirus]
gi|154243367|gb|ABS71856.1| gag-pol precursor polyprotein [RD114 retrovirus]
Length = 1739
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 1192 YTDGSSYIDSGTRRAGAAVV---DGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKA 1248
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A +V + GH
Sbjct: 1249 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPRRVAIIHCPGH 1308
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + D++AR AV+
Sbjct: 1309 QKGQDPIATGNRQADQVARQVAVA 1332
>gi|151429074|gb|ABS12072.1| Gag-Pol polyprotein [RD114 retrovirus]
Length = 1740
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ + G G V+ G I + T+ + + A+ L K
Sbjct: 1192 YTDGSSYIDSGTRRAGAAVV---DGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKA 1248
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y +++ G TS+ K +KN + ++A +V + GH
Sbjct: 1249 NIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPRRVAIIHCPGH 1308
Query: 129 AGNQ-----ENEKVDRIARNAAVS 147
Q N + D++AR AV+
Sbjct: 1309 QKGQDPIATGNRQADQVARQVAVA 1332
>gi|284433527|sp|A1Z651|POL_XMRV6 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
gi|121104178|gb|ABM47428.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP62]
gi|262192784|gb|ACY30455.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|89889047|ref|YP_512361.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP62]
gi|88765819|gb|ABD49687.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP62]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|123951411|sp|Q2F7J3|POL_XMRV3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
gi|82582297|gb|ABB83225.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP35]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|242811449|ref|XP_002485751.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714090|gb|EED13513.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ G G G + + + S A A
Sbjct: 22 DIVIFSDGS-RLIDGRAGGGYIGFQAHHQFLRSSLSYGHGKEVFNTEAEAALAGAQASIA 80
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 81 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 140
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GH ENE D A+ A+S
Sbjct: 141 IRWVPGHTKIPENEAADLTAKEGAISI 167
>gi|156551597|ref|XP_001602462.1| PREDICTED: similar to pol-like protein [Nasonia vitripennis]
Length = 727
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 21/140 (15%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TD + N IS T + A+
Sbjct: 384 KSYAIFTDCSKKPNNKKA--------------ISNTASIFTAECSAISNALDIALQNPGH 429
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ S + ++ +F+ + ++ + YWI
Sbjct: 430 FFLIF-------SDSLSALSSLNSTKFTARINPHVLEIKKKHNEFISKNPENDIKYYWIP 482
Query: 127 GHAGNQENEKVDRIARNAAV 146
H G NE D++A+ AA
Sbjct: 483 AHVGILGNEMADQLAKEAAE 502
>gi|145603928|ref|XP_365999.2| hypothetical protein MGG_10219 [Magnaporthe oryzae 70-15]
gi|145012050|gb|EDJ96706.1| hypothetical protein MGG_10219 [Magnaporthe oryzae 70-15]
Length = 471
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 133 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 192
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 193 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 243
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 244 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 274
>gi|145225753|ref|YP_001136431.1| ribonuclease H [Mycobacterium gilvum PYR-GCK]
gi|315446104|ref|YP_004078983.1| ribonuclease HI [Mycobacterium sp. Spyr1]
gi|145218239|gb|ABP47643.1| ribonuclease H [Mycobacterium gilvum PYR-GCK]
gi|315264407|gb|ADU01149.1| ribonuclease HI [Mycobacterium sp. Spyr1]
Length = 306
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 47/143 (32%), Gaps = 11/143 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V TDG+ G G+G L Y + S + + AI A
Sbjct: 132 VCVATDGSVRG--KITGYGWLASSGEYGLQGFRHSTKLIGPQVVLVAELRAIGAAVQRLR 189
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKW----QQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + +DS +W+ + KT + E A ++
Sbjct: 190 GRDITVLSDSRPAIGMVKRWMDGEDVLPEGYLAYRESGKTPGLVRARQMIFEDRA--RIT 247
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
W+KGH G NE D +AR A
Sbjct: 248 PLWVKGHRGEPLNEGADALARLA 270
>gi|162456028|ref|YP_001618395.1| hypothetical protein sce7746 [Sorangium cellulosum 'So ce 56']
gi|161166610|emb|CAN97915.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 305
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 18/148 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-------IKALT 61
V YTD + S P GWGV LR + G ++ E A +
Sbjct: 33 VTCYTDASFS--PIVAGWGVWLRSTRGRIVRHGACPPYVSSANEAELAAIFAGVYLARKA 90
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +++YTDS + S K + + V + ++ ++D
Sbjct: 91 WGEAVRGLVVYTDSQAAVRFLSDGALKPRIQR----NAPAVARLRERIRTFSNEHGIEMD 146
Query: 122 LYWIKGH-----AGNQENEKVDRIARNA 144
L W+KGH N + D++AR A
Sbjct: 147 LRWVKGHQRTNTVRAYLNARCDQLARAA 174
>gi|145609047|ref|XP_364256.2| hypothetical protein MGG_09101 [Magnaporthe oryzae 70-15]
gi|145016499|gb|EDK00929.1| hypothetical protein MGG_09101 [Magnaporthe oryzae 70-15]
Length = 514
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 176 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 235
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 236 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 286
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 287 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 317
>gi|322496544|emb|CBZ31613.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 250
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 78/219 (35%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTAL 63
Y DGACS N G+G + S TNNR E+ A I A+
Sbjct: 32 VVYVDGACSHNGTSHARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 91
Query: 64 KYPC----------------------------KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
+++YTDS YV G +++ KKW QNG+
Sbjct: 92 FVDAGAPADALEATHLVDPSAWPLVNLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFL 151
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK------------------------------------ 119
S + V+N DLW + + ++
Sbjct: 152 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRARQWGDGHRNEADLAEPVRYTCQN 211
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V+L ++GH+ NE D +A + ++
Sbjct: 212 TLNDKSEGVELIHVRGHSKVHGNEIADSLAVMGSRLHRS 250
>gi|320091413|gb|ADW08942.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus]
Length = 1733
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAM 1318
>gi|1890639|gb|AAC57052.1| pol protein [Simian immunodeficiency virus - agm.tan-1]
Length = 1067
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ N G G L + I ++TTN + EL A + AL K KV +
Sbjct: 663 YCDGACNRNSKLGKAGFLTNTGESQVIE---LEDTTNQQAELQAVLLALKHSK--SKVNI 717
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + ++ + E + + L W+ H G
Sbjct: 718 VTDSQYVMGILTAQPTQS-------------DSVLVNQIIEEMINKDAIYLTWVPAHKGI 764
Query: 132 QENEKVDRIARNAAVS 147
N+++D++
Sbjct: 765 GGNQEIDKLVSQGIRQ 780
>gi|18448744|gb|AAL69910.1|AF462057_3 Pr180 gag-pro-pol polyprotein [Moloney murine leukemia virus]
Length = 1738
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1181 YTDGSSFLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1237
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 1238 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 1297
Query: 129 A-GN----QENEKVDRIARNAA 145
G+ + N D+ AR AA
Sbjct: 1298 QKGHSAEARGNRMADQAARKAA 1319
>gi|294872399|ref|XP_002766265.1| hypothetical protein Pmar_PMAR023144 [Perkinsus marinus ATCC 50983]
gi|239866995|gb|EEQ98982.1| hypothetical protein Pmar_PMAR023144 [Perkinsus marinus ATCC 50983]
Length = 331
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 7/138 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ + G G+++ KG E + + + V+
Sbjct: 108 IFTDGSVVKD-RKTGAGMVVYRKGVEVHSNYWKLSPYATITDCELLGLLEAVRW----VI 162
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L T+ F+ + ++ + + A KV +W+ GH+G
Sbjct: 163 LTTEREEEWAVFTDSQAVLKILSS--RSTVARRDKARQITLLLAEIPDKVTFHWVPGHSG 220
Query: 131 NQENEKVDRIARNAAVSF 148
N++ D +A A
Sbjct: 221 MFANDRADELAAKGASMM 238
>gi|242825272|ref|XP_002488406.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712224|gb|EED11650.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1732
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 1445 DIVIFSDGSRLADGRAGG-GYIGFQAHNQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 1503
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + V
Sbjct: 1504 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEAFESFRTLAAGWPLRERLPHTKSGSVQ 1563
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GH ENE D A+ A S
Sbjct: 1564 IRWVPGHTKIPENEAADSAAKEGAAS 1589
>gi|111221655|ref|YP_712449.1| bifunctional RNase H/acid phosphatase [Frankia alni ACN14a]
gi|111149187|emb|CAJ60870.1| Putative bifunctional protein (Ribonuclease H/phosphoglycerate
mutase) [Frankia alni ACN14a]
Length = 394
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS------GGEKETTNNRMELMAAI 57
+R + DG GNPGP G+G ++R +++ G L+A +
Sbjct: 18 STVRRLVVEADGGSRGNPGPAGYGAVVRDAADGTVLAERAASIGHATNNVAEYSGLIAGL 77
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+A + +V DS V + S K A
Sbjct: 78 RAAAEIAPDAEVEARLDSKLVVEQMSGRW----------KVKHPAMRPLADEAAALARTF 127
Query: 118 HKVDLYWIKGHAGNQENEKVDRI 140
V W+ N DR+
Sbjct: 128 PAVRYQWVP----RARNADADRL 146
>gi|145608956|ref|XP_369717.2| hypothetical protein MGG_06232 [Magnaporthe oryzae 70-15]
gi|145016375|gb|EDK00865.1| hypothetical protein MGG_06232 [Magnaporthe oryzae 70-15]
Length = 365
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + D++ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDNTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQST 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|119495985|ref|XP_001264766.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
gi|119412928|gb|EAW22869.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
Length = 221
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGG---WGVLLRYKG--KEKIISGGEKETTNNRMELMAAIK 58
H + DGACS N G +GV + + GE TN EL A ++
Sbjct: 49 SHSDHIVVAVDGACSKNGKDGARSSYGVFWGHNNVLNTAVPVEGEGHHTNQVAELRACMR 108
Query: 59 ALTALKYP-----------CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
AL + + V++ +DS Y+ +G ++W+ KW++NGWK S V N +
Sbjct: 109 ALLDVVHVKSLFEDQGITLSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEH 168
Query: 108 WMKFVEASAQHK----VDLYWIKGHAGNQENEKVDRIARN 143
+ + + + +W H + N D +A+
Sbjct: 169 FKAIERLTEDLERQKLILKFW---HVPRRNNRDADTMAKA 205
>gi|242804915|ref|XP_002484469.1| hypothetical protein TSTA_022890 [Talaromyces stipitatus ATCC
10500]
gi|218717814|gb|EED17235.1| hypothetical protein TSTA_022890 [Talaromyces stipitatus ATCC
10500]
Length = 440
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Query: 39 ISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD 98
+ E L +++ P + +YTD+ + Q +
Sbjct: 192 HTVYAGELEGIDAALEILLQSQPRGDNPHEATIYTDNQAAIRATCQPGRSS-------GQ 244
Query: 99 KKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + + ++ +V L W+ GH G N+K D++A+ AAV +
Sbjct: 245 YIIRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNKKADQLAKLAAVEATRR 297
>gi|322510672|gb|ADX05986.1| putative ribonuclease H [Organic Lake phycodnavirus 1]
Length = 203
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 8 EVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNN---RMELMAAIKALT 61
+++ Y DG+C N G G+ + T N +
Sbjct: 58 DLYVYCDGSCIHNGQTYSKTGIGIYFGENDIRNVSKQINGHTNNVAELVAMIEVFGLIQK 117
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L+ K+++ +DS Y + KK ++ W + N +L + E V
Sbjct: 118 ELQENKKIVIVSDSKYALHCVKDYGKKQEKEQWVN----DIPNKELVKQLYETYKNTNVQ 173
Query: 122 LYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
I H + N K D++A +K+K+
Sbjct: 174 FTHIYAHTNKKDVHSLGNAKADQLA------YKSKL 203
>gi|328463608|gb|EGF35217.1| ribonuclease HI [Lactobacillus helveticus MTCC 5463]
Length = 218
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 10 HAYTDGACSG-NPGPGGWGVLLRYKGKEKIISGG-----EKETTNNRMELMAAIKALTAL 63
+TDG+ N G+ ++ E + G + N E+ A A++
Sbjct: 77 IIFTDGSHQNKNLKYVGFAAIIITAEDETQLKGCSDNSGMVKHANVSGEISAVEMAVSWA 136
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K LY Y + +K W N T + + + + K++
Sbjct: 137 KRHGLESLYIYHDY------KELKGWVDNNDHTKTDISGDYVKFINQQRDNGM--KIEFT 188
Query: 124 WIKGHAGNQENEKVDRIARNAA 145
+ GH G ++NE+VD++A+ A
Sbjct: 189 RVPGHRGFKDNERVDKLAQAAI 210
>gi|145603693|ref|XP_369579.2| hypothetical protein MGG_13283 [Magnaporthe oryzae 70-15]
gi|145011869|gb|EDJ96525.1| hypothetical protein MGG_13283 [Magnaporthe oryzae 70-15]
Length = 759
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 176 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGA 235
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 236 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 286
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 287 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 317
>gi|145590536|ref|YP_001152538.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
gi|145282304|gb|ABP49886.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
Length = 199
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 23/145 (15%)
Query: 10 HAYTDGACSG-NPG-PGGWGVLLRYKGKEK-----IISGGEKETTNNRMELMAAIKALTA 62
AY DGAC NPG GG+G ++ +G+ + TNN E A I AL
Sbjct: 10 VAYVDGACEPVNPGGVGGYGFVIYAEGRAVAEGLGVACCCTALCTNNVAEYKAVIAALRR 69
Query: 63 LKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
V + +DS V + + L S +
Sbjct: 70 AAELGCRSVKIRSDSQLVVYQLTGVYRVHA----------PHLAELLEEVKRATSQFAEF 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNAA 145
W+ + N++ DR+++ A
Sbjct: 120 SAEWVP----RERNKRADRLSKLAI 140
>gi|45358400|ref|NP_987957.1| ribonuclease H [Methanococcus maripaludis S2]
gi|44921158|emb|CAF30393.1| RNase HI related protein [Methanococcus maripaludis S2]
Length = 201
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 7 REV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTAL 63
++V HA+ DG+ + G G L+ + G EK I G + E + R + + A+
Sbjct: 65 KDVMHAWVDGSFNLKNKEYGAGALILFNGIEKEIKAKGNDTELSKMRNVAGEILASELAM 124
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+Y + Y + + I+ K + + ++
Sbjct: 125 EYAVSKNVKNLVIYHDYIGIEKWCTGEW------KTNKSGTIEYIEKCINYLKKLNIEFV 178
Query: 124 WIKGHAGNQENEKVDRIARN 143
+K H+G++ NE D++A+
Sbjct: 179 KVKAHSGDKNNEIADKLAKE 198
>gi|19553436|ref|NP_601438.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|62391077|ref|YP_226479.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|19110481|dbj|BAB85788.1| RNase HI [Corynebacterium glutamicum]
gi|21325007|dbj|BAB99629.1| Phosphoglycerate mutase/fructose-2,6-bisphosphatase
[Corynebacterium glutamicum ATCC 13032]
gi|41326416|emb|CAF20578.1| Ribonuclease HI [Corynebacterium glutamicum ATCC 13032]
Length = 382
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ + DG GNPG G G ++ K +++ + TNN E ++ L
Sbjct: 1 MK-LVIEADGGSRGNPGVAGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLK 59
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V +Y DS V + S K + AS
Sbjct: 60 AARELGATSVDVYMDSKLVVEQMSGRW----------KIKHPDMKVLAIEAKEIASEIGS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V WI ++N++ D ++ A +
Sbjct: 110 VSYTWIP----REKNKRADALSNVAMDAA 134
>gi|28972760|dbj|BAC65796.1| mKIAA1466 protein [Mus musculus]
Length = 921
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 363 YTDGSSFLQEGQRRAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 419
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 420 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 479
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR AA+
Sbjct: 480 QKGNSAEAKGNRMADQAAREAAM 502
>gi|294951625|ref|XP_002787074.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901664|gb|EER18870.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 370
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDG+ G+ G + + + E+ E+ T ++ EL A +AL L Y
Sbjct: 80 IYTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYS---- 135
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ ++ SQ + + T ++I V KV L W GH G
Sbjct: 136 AHRGIEWLLFTDSQASIRTIRGREATERSAIARDIAHLSLHV------KVQLNWCPGHEG 189
Query: 131 NQENEKVDRIARNAAVSF 148
Q NE VD++A
Sbjct: 190 VQWNEAVDQLANTGRKQL 207
>gi|289583376|ref|YP_003481786.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|289532874|gb|ADD07224.1| ribonuclease H [Natrialba magadii ATCC 43099]
Length = 217
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 8/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ GNPGP G G ++ G+E++ +R A A L +
Sbjct: 82 VLYVDGSSRGNPGPAGAGAVIMDGGEEQLA--PLGRPVGSRTGNNTAEYAALQLGLSELL 139
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y + S + + G + ++ + + +H+ H
Sbjct: 140 ARYEPDRLEVRIDSMTVIRDIWGGEEPTEPGVEPYSEAVTAALSTIPEHQYT------HL 193
Query: 130 GNQENEKVDRIARNAAV 146
+ + D +A A
Sbjct: 194 ADSDPNPADALATVGAD 210
>gi|262166313|ref|ZP_06034050.1| ribonuclease HI [Vibrio mimicus VM223]
gi|262026029|gb|EEY44697.1| ribonuclease HI [Vibrio mimicus VM223]
Length = 50
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+A+H+V+ W+KGHAG++ENE D +AR AA +
Sbjct: 1 MDRETARHQVEWRWVKGHAGHRENEMCDELARQAAEN 37
>gi|322510768|gb|ADX06082.1| putative ribonuclease H [Organic Lake phycodnavirus 1]
Length = 203
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 8 EVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNN---RMELMAAIKALT 61
+++ Y DG+C N G G+ + T N +
Sbjct: 58 DLYVYCDGSCIHNGQIYSKTGIGIYFGENDIRNVSKQINGHTNNVAELVAMIEVFGLIQK 117
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L+ K+++ +DS Y + KK ++ W + N +L + E V
Sbjct: 118 ELQENKKIVIVSDSKYALHCVKDYGKKQEKEQWVN----DIPNKELVKQLYETYKNTNVQ 173
Query: 122 LYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
I H + N K D++A +K+K+
Sbjct: 174 FTHIYAHTNKKDVHSLGNAKADQLA------YKSKL 203
>gi|326480183|gb|EGE04193.1| hypothetical protein TEQG_03224 [Trichophyton equinum CBS 127.97]
Length = 210
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAA 145
+V WI H G NE+ D++A+ AA
Sbjct: 20 WEVQFRWIPAHVGVPGNEEADQLAKEAA 47
>gi|322702355|gb|EFY94018.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 639
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 3/139 (2%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+H YTD + GN G G + + K G+ + + I +
Sbjct: 349 PNAIHLYTDRS--GNNGHVGAAAVCTTINQTKSAYMGDDNVSTAYAGELQGISLALQIAQ 406
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + +Q + S +++I M+ ++ + V+ WI
Sbjct: 407 EDRNRGSIREKVLIYTDNQAAVRSVARPRGESGSYLLQDITRRMQELQ-AQGLTVEDRWI 465
Query: 126 KGHAGNQENEKVDRIARNA 144
H G NE D+ A+NA
Sbjct: 466 PAHTGIHGNEAADQAAKNA 484
>gi|302666604|ref|XP_003024899.1| ribonuclease H1, putative [Trichophyton verrucosum HKI 0517]
gi|291188976|gb|EFE44288.1| ribonuclease H1, putative [Trichophyton verrucosum HKI 0517]
Length = 265
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 18/163 (11%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISG-GEKETTNNRMELMAAI 57
+ + + DGAC GN GV + + +N + E++A I
Sbjct: 19 RRGNTQPLVISVDGACRGNGREHRDASAGVFVNQGSRFNESIPLNLDNPSNQKAEILAGI 78
Query: 58 KALTALKYPC-----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
L + V + +DS Y+ KG ++W ++W+ NG++ ++ + V N +L+ +
Sbjct: 79 HGLNKAREMDGGPSRHVTIRSDSEYMVKGVNEWSRRWESNGYRAANGQPVVNRELFQQLN 138
Query: 113 EASAQ-----HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
A KVD + +EN D A A ++
Sbjct: 139 SARDSLERSGIKVDFQHVP----REENRDADHWASQAFDNYHK 177
>gi|259047116|ref|ZP_05737517.1| ribonuclease HI [Granulicatella adiacens ATCC 49175]
gi|259036166|gb|EEW37421.1| ribonuclease HI [Granulicatella adiacens ATCC 49175]
Length = 135
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTD A +GNPG G G+LL G++ ++ +N + AI L +
Sbjct: 2 IKVYTDAAVNGNPGEVGLGILLVKDGEQFPFKFPIEKKMDNHLAEFTAISKALELLDAQQ 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + T + + + ++ +V + WI
Sbjct: 62 HQ----EELIFIHTDSKVAADAILKNYTKREDNRIVLQEIQRQLK--QFLQVFIKWIP-- 113
Query: 129 AGNQENEKVDRIARNA 144
+N D++AR A
Sbjct: 114 --ESDNRGADQLARQA 127
>gi|400822|sp|P31822|POL_FIVT2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|323950|gb|AAA43071.1| pol polyprotein [Feline immunodeficiency virus]
Length = 1124
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ G GK E E +N + E+ A + AL A ++
Sbjct: 598 YIDGS--RKQGKAARAAYWTNTGK---WQIMEIEGSNQKAEVQALLLALKAGSEEMNII- 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ +Q + + + + + W+ GH G
Sbjct: 652 -TDSQYILNILNQQPDLMEGL--------------WQEVLEQMEKKIAIFIDWVPGHKGI 696
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 697 PGNEEVDKL 705
>gi|145606346|ref|XP_365678.2| hypothetical protein MGG_11929 [Magnaporthe oryzae 70-15]
gi|145014032|gb|EDJ98673.1| hypothetical protein MGG_11929 [Magnaporthe oryzae 70-15]
Length = 215
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A T + ++ + DS+ V G + Q + + +
Sbjct: 64 AATKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145296194|ref|YP_001139015.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
R]
gi|140846114|dbj|BAF55113.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 380
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALT 61
++ + DG GNPG G G ++ K +++ + TNN E ++ L
Sbjct: 1 MK-LVIEADGGSRGNPGVAGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLK 59
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V +Y DS V + S K + AS
Sbjct: 60 AARELGATSVDVYMDSKLVVEQMSGRW----------KIKHPDMKVLALEAKEIASEIGS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V WI ++N++ D ++ A +
Sbjct: 110 VSYTWIP----REKNKRADALSNVAMDAA 134
>gi|146070838|ref|XP_001463111.1| ribonuclease H1 [Leishmania infantum]
gi|134067194|emb|CAM65460.1| putative ribonuclease H1 [Leishmania infantum JPCM5]
Length = 250
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 78/219 (35%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTAL 63
Y DGACS N G+G + S TNNR E+ A I A+
Sbjct: 32 VVYVDGACSHNGTSHARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 91
Query: 64 KYPC----------------------------KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
+++YTDS YV G +++ KKW QNG+
Sbjct: 92 FVDAGAPADALEATHLVDPSAWPLVNLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFL 151
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK------------------------------------ 119
S + V+N DLW + + ++
Sbjct: 152 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRARQWGDGHHNEADLAEPVRYTCQN 211
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V+L ++GH+ NE D +A + ++
Sbjct: 212 TLNDKSEGVELIHVRGHSKVHGNEMADSLAVMGSRLHRS 250
>gi|156061383|ref|XP_001596614.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980]
gi|154700238|gb|EDN99976.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 735
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + G G+ + N + + A++Y
Sbjct: 419 NTIAIYTDASSTLEGIRIGIGIAVILPNGRISHQETINIGVNQLVYNDELLGVTKAIEYT 478
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---VDLY 123
+ + + +Q KT ++ + V + Q+K + L
Sbjct: 479 NSIAQ-PGNKFKIYSDNQAGLF----RLKTPSDLPGQSCQIKAIKVAEAIQNKGAEISLN 533
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W+ GH Q NE D +A+ A
Sbjct: 534 WVPGHTSVQGNELADSLAKEA 554
>gi|172055036|ref|YP_001806363.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|171701317|gb|ACB54297.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
Length = 256
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 22/150 (14%)
Query: 6 LRE----VHAYTDGACSG-NPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKA 59
++ V Y DG NPG GG G ++ + E+ S TNN+ E I
Sbjct: 1 MKSDEAGVRLYFDGGTFPLNPGHGGCGAVIIQENDEQSFSKYLGENITNNQAEYGGLILG 60
Query: 60 LTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
L + + DS V + S + + + +
Sbjct: 61 LEKALEMNISSLEVKGDSELVICQVIGSY------RCRNSGLRPLHRQAISLA----KQF 110
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ WI + N+K D A A S
Sbjct: 111 EHIHFDWIP----REINKKADAAATEAIQS 136
>gi|157864171|ref|XP_001680798.1| ribonuclease H1 [Leishmania major strain Friedlin]
gi|68124090|emb|CAJ02072.1| putative ribonuclease H1 [Leishmania major strain Friedlin]
Length = 250
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 78/219 (35%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELMAAIKALTAL 63
Y DGACS N G+G + S TNNR E+ A I A+
Sbjct: 32 VVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 91
Query: 64 KYPC----------------------------KVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
+++YTDS YV G +++ KKW QNG+
Sbjct: 92 FVDAGAPADALEATHLVDPSAWRLVDLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFV 151
Query: 96 TSDKKTVKNIDLWMKFVEASAQHK------------------------------------ 119
S + V+N DLW + + ++
Sbjct: 152 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRACQWGDGHHSEADLAQLVRYTCQN 211
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
V+L ++GH+ NE D +A + ++
Sbjct: 212 ARNDKSEGVELIHVRGHSKVHGNEMADSLAVMGSRLHRS 250
>gi|154504406|ref|ZP_02041144.1| hypothetical protein RUMGNA_01910 [Ruminococcus gnavus ATCC 29149]
gi|153795335|gb|EDN77755.1| hypothetical protein RUMGNA_01910 [Ruminococcus gnavus ATCC 29149]
Length = 209
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
AY DG+ G G+G L+ +E+++ G + + A + L +K +
Sbjct: 70 AYVDGSYF--QGVYGFGGFLKLSDEEEVVLQGSGDHPDLAKMHNVAGELLGCIKAVKEAE 127
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ Q I+ W W T K D K+ +KGH G
Sbjct: 128 KRKIAELSIFYDYQGIESWVTGDWAAKQAGTQKYRDFMNGT-----SVKLHFIKVKGHTG 182
Query: 131 NQENEKVDRIARNA 144
+ NE+ D +A+ A
Sbjct: 183 VEGNERADSLAKEA 196
>gi|294962|gb|AAA74707.1| pol protein [Simian immunodeficiency virus]
Length = 1031
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGA + + G G + + ++TTN + EL + AL K K
Sbjct: 622 VTFYVDGAANRDSKTGNAGYVASDGTQRVQY---LEQTTNQQAELEGLLMALQDSKD--K 676
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + DS Y + T+ + + + EA + + + W+ H
Sbjct: 677 VNIVVDSQYSYGIL---------MTCPTNTEHPIVEQIIQ----EAIKKEAIYVTWVPAH 723
Query: 129 AGNQENEKVDRIARNAAVSF 148
G NE VD++
Sbjct: 724 KGIGGNEAVDKLVSKGIRKI 743
>gi|145607457|ref|XP_361782.2| hypothetical protein MGG_12191 [Magnaporthe oryzae 70-15]
gi|145015005|gb|EDJ99573.1| hypothetical protein MGG_12191 [Magnaporthe oryzae 70-15]
Length = 577
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 239 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 298
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 299 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 349
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 350 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 380
>gi|145607920|ref|XP_365136.2| hypothetical protein MGG_13628 [Magnaporthe oryzae 70-15]
gi|145015399|gb|EDJ99935.1| hypothetical protein MGG_13628 [Magnaporthe oryzae 70-15]
Length = 1095
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D + YTDG+ N GW L + I+ +
Sbjct: 757 LDMVSPDNIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 816
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 817 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 867
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 868 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 898
>gi|300825689|gb|ADK35878.1| pol protein [Porcine endogenous retrovirus C]
Length = 1145
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 12 YTDGACSG-NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ ++ G I + E T+ + + A+ L +
Sbjct: 591 FTDGSSYVVEGKRMARAAVV--DGTRTIWASSLSEGTSAQKAELVALTQALRLAEGKSIN 648
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA 129
+YTDS Y ++Q G TS + VKN + + +EA ++ + GH
Sbjct: 649 IYTDSRYAFATAHVHGAIYKQRGLLTSAGREVKNKEKILSLLEALHLPKRLAIIHCPGHQ 708
Query: 130 G-----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 709 KAKDLISRGNQMADRVAKQAAQ 730
>gi|87042742|gb|ABD16378.1| pol protein [Feline immunodeficiency virus]
Length = 1086
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK E E +N + E+ A + AL A ++
Sbjct: 561 YIDGG--RKQGKAARAAYWTDTGK---WQVMEIEGSNQKAEVQALLLALQAGPEEMNII- 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ +Q + E + + + W+ GH G
Sbjct: 615 -TDSQYILNIITQQPDLMEGL--------------WQEVLEEMEKKIAIFIDWVPGHKGI 659
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 660 PGNEEVDKL 668
>gi|327399396|ref|YP_004340265.1| ribonuclease H [Hippea maritima DSM 10411]
gi|327182025|gb|AEA34206.1| ribonuclease H [Hippea maritima DSM 10411]
Length = 177
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
+ DGA S NPG G GV++ + IS TNN E A I+ L LK
Sbjct: 50 EMFVDGASSSNPGKAGIGVVIKKNGVVVDKISEFIGIATNNVAEYSALIRGLKRLKELGV 109
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
KV +++DS V K + DK + ++ ++
Sbjct: 110 KKVNVFSDSELVVKQLKGIYRV--------KDKNLKTLYNEVLRLSNKFEYLNIE----- 156
Query: 127 GHAGNQENEKVDRIARNAA 145
H +N D +A+ A
Sbjct: 157 -HIKRDKNSMADTLAKTAI 174
>gi|6358700|gb|AAF07325.1|AF188115_2 Pol protein [Simian immunodeficiency virus]
Length = 1023
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G G+ K +TTN + EL A + AL K +V
Sbjct: 617 YVDGAAEKVGKTGKAGY-----VTQSGKEKVKELTDTTNQQAELEAVLLALKDSK--SRV 669
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV K SQ + + + E + +V L W+ H
Sbjct: 670 NIVTDSQYVMKVLSQRPTETEH-------------PVVKQIIEECKKKDQVYLGWVPAHK 716
Query: 130 GNQENEKVDRIARNAAVSFK 149
G N++VD + +
Sbjct: 717 GIGGNQEVDHLVSKGIRQIQ 736
>gi|2244914|emb|CAB10336.1| splicing factor like protein [Arabidopsis thaliana]
gi|7268306|emb|CAB78600.1| splicing factor like protein [Arabidopsis thaliana]
Length = 559
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 38/136 (27%), Gaps = 25/136 (18%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGA GNPGP G ++R E L A L +
Sbjct: 36 VKVSTDGASRGNPGPAAAGGVIRD----------EDGLWVGGFALQLAFVRLRWQSCGGR 85
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V L DS V I + + L + +V H
Sbjct: 86 VELEVDSELVVGFLQSGISE---------AHPLAFLVRLCHGLLSKDWLVRV------SH 130
Query: 129 AGNQENEKVDRIARNA 144
+ N D +A A
Sbjct: 131 VYREANRLADGLANYA 146
>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 16/159 (10%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + ++D + N G + K ++ + S + M + A
Sbjct: 1273 RQAMTGATVFSDASGQQNQ--LGAAAVALDKNQQILGSRQ---ISIGSMSYWSVYAAELM 1327
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--- 119
Y L++ + + S + + N A H+
Sbjct: 1328 AIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAG 1387
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ L W+ GH G+ NE DR+A+ A K
Sbjct: 1388 ELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKK 1426
>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 16/159 (10%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + ++D + N G + K ++ + S + M + A
Sbjct: 1273 RQAMTGATVFSDASGQQNQ--LGAAAVALDKNQQILGSRQ---ISIGSMSYWSVYAAELM 1327
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--- 119
Y L++ + + S + + N A H+
Sbjct: 1328 AIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAG 1387
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ L W+ GH G+ NE DR+A+ A K
Sbjct: 1388 ELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKK 1426
>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae]
Length = 1301
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 16/159 (10%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + ++D + N G + K ++ + S + M + A
Sbjct: 967 RQAMTGATVFSDASGQQNQ--LGAAAVALDKNQQILGSRQ---ISIGSMSYWSVYAAELM 1021
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK--- 119
Y L++ + + S + + N A H+
Sbjct: 1022 AIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAG 1081
Query: 120 --------VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ L W+ GH G+ NE DR+A+ A K
Sbjct: 1082 ELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKK 1120
>gi|85700615|gb|ABC74722.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + K
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEK 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSKGIRK 709
>gi|116179140|ref|XP_001219419.1| hypothetical protein CHGG_00198 [Chaetomium globosum CBS 148.51]
gi|88184495|gb|EAQ91963.1| hypothetical protein CHGG_00198 [Chaetomium globosum CBS 148.51]
Length = 786
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKG------KEKIISGGEKETTNNRMELMAAIK 58
++ Y DGAC+ N P GGW V+ +EK G E T+NR EL AAI
Sbjct: 404 KLLLYIDGACTDNGQPNPRGGWAVVYGPTDDASGRLEEKGPFGHESVPTSNRAELRAAIA 463
Query: 59 AL----TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD---KKTVKNIDLWMKF 111
AL +++ TDSSYV G + W + W NGW+T K +L +
Sbjct: 464 ALRLRNWEQDGFDGMVIATDSSYVVDGATGWTQGWTVNGWRTQSGRAVKNKDLWELLLGE 523
Query: 112 VEASAQHKVDLYWIKGHAGNQEN 134
VE A + + K + N
Sbjct: 524 VERWADRGFQITFWK--IPRELN 544
>gi|123940432|sp|Q2F7J0|POL_XMRV4 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
gi|82582301|gb|ABB83228.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP42]
Length = 1733
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG G V E I G T+ + + A+ + K+
Sbjct: 1179 YTDGGSFLQEGQRRAGAAV---TTETEVIWGGVLPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 1296 QKGNSAEARGNRMADQAAREAAMKA 1320
>gi|14164888|gb|AAK55275.1|AF334679_2 pol protein [Simian immunodeficiency virus]
Length = 1043
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ N G G + ++ + L P KV +
Sbjct: 638 YIDGSCNRNSKEGKAGYVTDRGKEKVLPLEQATNQQAELQA-----LLLALKDSPSKVNV 692
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + V + W+ H G
Sbjct: 693 VTDSQYVLNIITGQPSES-------------DSDIVAQIIEQLVQKEAVYIGWVPAHKGI 739
Query: 132 QENEKVDRIARNAAVS 147
N +VDR+
Sbjct: 740 GGNNEVDRLVSQGIRQ 755
>gi|294880719|ref|XP_002769117.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239872268|gb|EER01835.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 390
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 7/138 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ G G+++ KG E + + + V+
Sbjct: 108 IFTDGS-RVKDRKTGAGMVVYRKGVEVHSNYWKLSPYATITDCELLGVLEAVRW----VI 162
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L T+ F+ + ++ + + A KV +W+ GH+G
Sbjct: 163 LTTEGEEEWAVFTDSQAVLKILSS--RSTVARRDKARQITLLLAEIPDKVTFHWVPGHSG 220
Query: 131 NQENEKVDRIARNAAVSF 148
N + D +A A
Sbjct: 221 MFANGRADELAAKGASMM 238
>gi|257419453|ref|ZP_05596447.1| ribonuclease HI [Enterococcus faecalis T11]
gi|257161281|gb|EEU91241.1| ribonuclease HI [Enterococcus faecalis T11]
gi|315150752|gb|EFT94768.1| ribonuclease HI [Enterococcus faecalis TX0012]
Length = 135
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQAITN-- 59
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D+ S Q + + + + +E + + + W+
Sbjct: 60 ----EDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|318081524|ref|ZP_07988840.1| ribonuclease H [Streptomyces sp. SA3_actF]
Length = 166
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + DS Y K ++W+ W++ GWKT+ K V N +L +V+ ++
Sbjct: 9 PLEVRMDSQYAMKAVTEWLPGWKRRGWKTAAGKPVANQELVEAIDALLQGREVEFRYVPA 68
Query: 128 HA--GNQENEKVDRIARNAAVS 147
H G+ N D+ A A+S
Sbjct: 69 HQVGGDPLNAIADQAASECAIS 90
>gi|212382653|gb|ACJ25643.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA S G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAASRETKIGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|156060559|ref|XP_001596202.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980]
gi|154699826|gb|EDN99564.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 52.2 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 12/143 (8%)
Query: 7 REVHAYTDGACSGNP-GPG-GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+ YTD + + G G G V+L +I N++ + +T
Sbjct: 171 NTIIIYTDASFTLEGIGVGIGIAVILPNG---RISHQETINIDVNQLVYNGELLEVTKAI 227
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---VD 121
+ + + +Q KT ++ + + Q+K +
Sbjct: 228 EYTNSIAQPGNKFKIYSDNQAGLF----RLKTPSDLPGQSCQIKAIKAAEAIQNKGAEIS 283
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
L W+ GH Q NE D +A+ A
Sbjct: 284 LNWVPGHTSVQGNELADSLAKEA 306
>gi|227548845|ref|ZP_03978894.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079066|gb|EEI17029.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 368
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE---KETTNNRMELMAAIKALT- 61
++ V YTDG GNPG G G ++ + ++++NN E ++ L
Sbjct: 1 MK-VSVYTDGGSRGNPGVAGSGSVVYGADGTTLAEVAYVVGQKSSNNVAEYHGLLRGLEA 59
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V +Y DS V + S K A+ V
Sbjct: 60 AREAGATEVEVYMDSKLVVEQMSGRW----------KIKHPDMADLARQARSLAAGFSSV 109
Query: 121 DLYWIKGHAGNQENEKVDRIAR 142
W+ +N+K D ++
Sbjct: 110 TYTWVP----RAKNKKADELSN 127
>gi|300811077|gb|ADK35811.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YT G G + + ++ G T R AI+
Sbjct: 609 ITIYTGGGKQDEEGVAAY--VTSNGKTKQKRLGPVTHQTAER----IAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W A+ V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRAKEMVYFAWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 RGIYGNQLADE 721
>gi|242825380|ref|XP_002488428.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712246|gb|EED11672.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 897
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 598 DIIIFSDGSRLVDGRAGG-GYIGFQAHNQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 656
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + V
Sbjct: 657 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEAFESFRTLAAGWPLRERLPHTKSGSVQ 716
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GH ENE D A+ A S
Sbjct: 717 IRWVPGHTKIPENEAADSAAKEGAAS 742
>gi|312376130|gb|EFR23313.1| hypothetical protein AND_13122 [Anopheles darlingi]
Length = 361
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
VH YTD + S + G G GV + + I+ T+ AIK
Sbjct: 174 VHIYTDASKSPD-GQCGIGVY--DETNDVRIALQLALDTSIMTAETLAIKVAMQHIADRG 230
Query: 69 VL---LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ L TDS + ++++ + + + + +V + WI
Sbjct: 231 IRRAVLLTDSQAACM-------------FLRRNRESRVRNAVADEILRMARTFQVTIQWI 277
Query: 126 KGHAGNQENEKVDRIARNA 144
GH N D +AR A
Sbjct: 278 PGHVEVSGNRIADELARTA 296
>gi|156063284|ref|XP_001597564.1| hypothetical protein SS1G_01758 [Sclerotinia sclerotiorum 1980]
gi|154697094|gb|EDN96832.1| hypothetical protein SS1G_01758 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1275
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ G G G ++ + T + A A K
Sbjct: 976 DIQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKAL 1035
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHKV 120
+ + + + S ++ + + ++ K+
Sbjct: 1036 TLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGKI 1095
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 1096 RVRWVPGHLDIPGNEIADKAAKEG 1119
>gi|154273753|ref|XP_001537728.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415336|gb|EDN10689.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 292
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 55 SNWAYNSCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 98
>gi|156053530|ref|XP_001592691.1| hypothetical protein SS1G_05611 [Sclerotinia sclerotiorum 1980]
gi|154703393|gb|EDO03132.1| hypothetical protein SS1G_05611 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 694
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ G G G ++ + T + A A K
Sbjct: 395 DIQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKAL 454
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHKV 120
+ + + + S ++ + + ++ K+
Sbjct: 455 TLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGKI 514
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 515 RVRWVPGHLDIPGNEIADKAAKEG 538
>gi|221316459|ref|ZP_03598264.1| hypothetical protein BsubsN3_22360 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
Length = 47
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ +KGH+G +NE DR+A A
Sbjct: 13 ITFNKVKGHSGIPDNELADRLANEAMDEL 41
>gi|156044887|ref|XP_001588999.1| hypothetical protein SS1G_09632 [Sclerotinia sclerotiorum 1980]
gi|154694027|gb|EDN93765.1| hypothetical protein SS1G_09632 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 906
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLL-RYKGKEKIISGGEK-ETTNNRMELMAAIKALTALK 64
++ ++DG+ G G G ++ ++ + S E AA+
Sbjct: 607 DIQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKAL 666
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----KV 120
L TD ++ + V H K+
Sbjct: 667 TLASTKLATDLWIFLDNHEDALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGKI 726
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 727 RVRWVPGHLDIPGNEIADKAAKEG 750
>gi|93210883|gb|ABF00839.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + EV Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAEVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTEPTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGPEVNVVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|82571241|gb|ABB84015.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA S G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAASRETKIGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|41408078|ref|NP_960914.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396433|gb|AAS04297.1| hypothetical protein MAP_1980c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 377
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + TNN E + L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLLAGLGD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ Q +G + + + + A ++
Sbjct: 60 ALKLGATEAEVYLD-------SKLLVEQMSGRWKVKHPDLIELHAQARSLAARFD-RISY 111
Query: 123 YWIKGHAGNQENEKVDRI 140
WI + N DR+
Sbjct: 112 TWIP----RERNSHADRL 125
>gi|315162355|gb|EFU06372.1| ribonuclease HI [Enterococcus faecalis TX0645]
Length = 135
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|229545660|ref|ZP_04434385.1| ribonuclease H [Enterococcus faecalis TX1322]
gi|256619221|ref|ZP_05476067.1| ribonuclease HI [Enterococcus faecalis ATCC 4200]
gi|256853283|ref|ZP_05558653.1| ebsB protein [Enterococcus faecalis T8]
gi|257079169|ref|ZP_05573530.1| ribonuclease HI [Enterococcus faecalis JH1]
gi|257087014|ref|ZP_05581375.1| ribonuclease HI [Enterococcus faecalis D6]
gi|257090042|ref|ZP_05584403.1| ribonuclease HI [Enterococcus faecalis CH188]
gi|257422455|ref|ZP_05599445.1| ebsB family protein [Enterococcus faecalis X98]
gi|294779386|ref|ZP_06744787.1| ribonuclease HI [Enterococcus faecalis PC1.1]
gi|307269539|ref|ZP_07550878.1| ribonuclease HI [Enterococcus faecalis TX4248]
gi|307275811|ref|ZP_07556950.1| ribonuclease HI [Enterococcus faecalis TX2134]
gi|307291834|ref|ZP_07571705.1| ribonuclease HI [Enterococcus faecalis TX0411]
gi|312903476|ref|ZP_07762656.1| ribonuclease HI [Enterococcus faecalis TX0635]
gi|229309228|gb|EEN75215.1| ribonuclease H [Enterococcus faecalis TX1322]
gi|256598748|gb|EEU17924.1| ribonuclease HI [Enterococcus faecalis ATCC 4200]
gi|256711742|gb|EEU26780.1| ebsB protein [Enterococcus faecalis T8]
gi|256987199|gb|EEU74501.1| ribonuclease HI [Enterococcus faecalis JH1]
gi|256995044|gb|EEU82346.1| ribonuclease HI [Enterococcus faecalis D6]
gi|256998854|gb|EEU85374.1| ribonuclease HI [Enterococcus faecalis CH188]
gi|257164279|gb|EEU94239.1| ebsB family protein [Enterococcus faecalis X98]
gi|294453515|gb|EFG21916.1| ribonuclease HI [Enterococcus faecalis PC1.1]
gi|295113108|emb|CBL31745.1| RNase HI [Enterococcus sp. 7L76]
gi|306497100|gb|EFM66646.1| ribonuclease HI [Enterococcus faecalis TX0411]
gi|306507503|gb|EFM76634.1| ribonuclease HI [Enterococcus faecalis TX2134]
gi|306514159|gb|EFM82735.1| ribonuclease HI [Enterococcus faecalis TX4248]
gi|310633352|gb|EFQ16635.1| ribonuclease HI [Enterococcus faecalis TX0635]
gi|315027884|gb|EFT39816.1| ribonuclease HI [Enterococcus faecalis TX2137]
gi|315029539|gb|EFT41471.1| ribonuclease HI [Enterococcus faecalis TX4000]
gi|315032012|gb|EFT43944.1| ribonuclease HI [Enterococcus faecalis TX0017]
gi|315144967|gb|EFT88983.1| ribonuclease HI [Enterococcus faecalis TX2141]
gi|315147423|gb|EFT91439.1| ribonuclease HI [Enterococcus faecalis TX4244]
gi|315156122|gb|EFU00139.1| ribonuclease HI [Enterococcus faecalis TX0043]
gi|315168874|gb|EFU12891.1| ribonuclease HI [Enterococcus faecalis TX1341]
gi|315577828|gb|EFU90019.1| ribonuclease HI [Enterococcus faecalis TX0630]
Length = 135
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|229549852|ref|ZP_04438577.1| ribonuclease H [Enterococcus faecalis ATCC 29200]
gi|255972636|ref|ZP_05423222.1| ribonuclease HI [Enterococcus faecalis T1]
gi|255975688|ref|ZP_05426274.1| ribonuclease HI [Enterococcus faecalis T2]
gi|256762657|ref|ZP_05503237.1| ribonuclease HI [Enterococcus faecalis T3]
gi|256959137|ref|ZP_05563308.1| ribonuclease HI [Enterococcus faecalis DS5]
gi|256964967|ref|ZP_05569138.1| ribonuclease HI [Enterococcus faecalis HIP11704]
gi|257082395|ref|ZP_05576756.1| ribonuclease HI [Enterococcus faecalis E1Sol]
gi|257085027|ref|ZP_05579388.1| ribonuclease HI [Enterococcus faecalis Fly1]
gi|257416248|ref|ZP_05593242.1| ribonuclease HI [Enterococcus faecalis AR01/DG]
gi|307273062|ref|ZP_07554308.1| ribonuclease HI [Enterococcus faecalis TX0855]
gi|307277906|ref|ZP_07558990.1| ribonuclease HI [Enterococcus faecalis TX0860]
gi|307289266|ref|ZP_07569222.1| ribonuclease HI [Enterococcus faecalis TX0109]
gi|312901867|ref|ZP_07761132.1| ribonuclease HI [Enterococcus faecalis TX0470]
gi|312951658|ref|ZP_07770553.1| ribonuclease HI [Enterococcus faecalis TX0102]
gi|388108|gb|AAC36852.1| cell wall enzyme [Enterococcus faecalis]
gi|229305121|gb|EEN71117.1| ribonuclease H [Enterococcus faecalis ATCC 29200]
gi|255963654|gb|EET96130.1| ribonuclease HI [Enterococcus faecalis T1]
gi|255968560|gb|EET99182.1| ribonuclease HI [Enterococcus faecalis T2]
gi|256683908|gb|EEU23603.1| ribonuclease HI [Enterococcus faecalis T3]
gi|256949633|gb|EEU66265.1| ribonuclease HI [Enterococcus faecalis DS5]
gi|256955463|gb|EEU72095.1| ribonuclease HI [Enterococcus faecalis HIP11704]
gi|256990425|gb|EEU77727.1| ribonuclease HI [Enterococcus faecalis E1Sol]
gi|256993057|gb|EEU80359.1| ribonuclease HI [Enterococcus faecalis Fly1]
gi|257158076|gb|EEU88036.1| ribonuclease HI [Enterococcus faecalis ARO1/DG]
gi|306499975|gb|EFM69336.1| ribonuclease HI [Enterococcus faecalis TX0109]
gi|306505303|gb|EFM74489.1| ribonuclease HI [Enterococcus faecalis TX0860]
gi|306510047|gb|EFM79071.1| ribonuclease HI [Enterococcus faecalis TX0855]
gi|310630375|gb|EFQ13658.1| ribonuclease HI [Enterococcus faecalis TX0102]
gi|311291060|gb|EFQ69616.1| ribonuclease HI [Enterococcus faecalis TX0470]
gi|315037140|gb|EFT49072.1| ribonuclease HI [Enterococcus faecalis TX0027]
gi|315152321|gb|EFT96337.1| ribonuclease HI [Enterococcus faecalis TX0031]
gi|315158236|gb|EFU02253.1| ribonuclease HI [Enterococcus faecalis TX0312]
gi|315163880|gb|EFU07897.1| ribonuclease HI [Enterococcus faecalis TX1302]
gi|315169619|gb|EFU13636.1| ribonuclease HI [Enterococcus faecalis TX1342]
gi|315172432|gb|EFU16449.1| ribonuclease HI [Enterococcus faecalis TX1346]
gi|323480887|gb|ADX80326.1| ribonuclease H [Enterococcus faecalis 62]
gi|327535292|gb|AEA94126.1| ribonuclease HI [Enterococcus faecalis OG1RF]
Length = 135
Score = 52.2 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|212383238|gb|ACJ25909.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + + Y DGA + G G + ++ + + + + A++
Sbjct: 580 LEKEPMAGIETFYVDGAANRETKIGKAGYVTDRGRQKVVTTTETTNQKAELLAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVTQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIRK 709
>gi|212382962|gb|ACJ25780.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMTGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSRGIRK 709
>gi|156541172|ref|XP_001599048.1| PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia
vitripennis]
Length = 1145
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+ G G G + G+E S I A+ L
Sbjct: 298 YTDGS-RAETGT-GSGYYCQRDGRETFFS-----LGLYATVFQTEIYAILTCAQRNIELS 350
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
D SQ + + TS + + V +KV L W+ GH
Sbjct: 351 ARDRIITICSDSQAVLRALMAHRTTSRLVWECKVVVNQLTV---HNNKVRLLWVPGHTAI 407
Query: 132 QENEKVDRIARNAAV 146
+ N+ DR+A A
Sbjct: 408 RGNDIADRLAALGAK 422
>gi|85700575|gb|ABC74686.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKKGKAGYVTDRGRQKIVHLNETTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++ +
Sbjct: 682 IYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|145610412|ref|XP_364205.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
gi|145017706|gb|EDK02069.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
Length = 2073
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 34/144 (23%), Gaps = 38/144 (26%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+D ++ YTDG+ + E R L
Sbjct: 1796 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGL------- 1832
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ S + + K ++ +V
Sbjct: 1833 ---------------EFAAGSASITPESHVFDAEAIGALKGLQAAAKAQPGARIWICTEV 1877
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W GH G N++ D +A+
Sbjct: 1878 RVRWCPGHQGIPGNDRADELAKAG 1901
>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa]
gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G +LR I E TNN E A + + K K+
Sbjct: 149 DGASKGNPGQAGAGAVLRTDDGSLICRLREGLGIATNNMAEYRAILLGMKYALQKGYTKI 208
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS V K N + + H
Sbjct: 209 QVKGDSKLVCMQIQGSWKAKHVNITNLCTEAKKLKNSFLSFHI--------------SHV 254
Query: 130 GNQENEKVDRIARNA 144
+ N + D A A
Sbjct: 255 LREFNSEADAQANLA 269
>gi|45382873|ref|NP_989963.1| pol-like protein ENS-3 [Gallus gallus]
gi|13194728|gb|AAK15526.1|AF329451_1 pol-like protein ENS-3 [Gallus gallus]
Length = 936
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 12 YTDGACSGNPGPGGW---GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+TD + W V L+ II+ GE + ++ + A+ ++ +
Sbjct: 505 FTDASSKREGKV--WKYRAVALQIGTDLTIITEGEG---SAQVGELVAVWSVFQHESEST 559
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+V +YTDS V KG ++W+ W++N W+ ++ V + W + + + + + W+
Sbjct: 560 TRVHIYTDSYAVFKGCTEWLPFWEKNNWEV-NRIPVWQKEKWQDIISIAKKGQFSVAWVA 618
Query: 127 GHAGN-----QENEKVDRIARNA 144
H + N + D +AR A
Sbjct: 619 AHQEDGTPVSHWNNRADELARIA 641
>gi|29376279|ref|NP_815433.1| EbsB protein [Enterococcus faecalis V583]
gi|227518917|ref|ZP_03948966.1| ribonuclease H [Enterococcus faecalis TX0104]
gi|227553535|ref|ZP_03983584.1| ribonuclease H [Enterococcus faecalis HH22]
gi|256961769|ref|ZP_05565940.1| ribonuclease HI [Enterococcus faecalis Merz96]
gi|293383475|ref|ZP_06629388.1| ribonuclease HI [Enterococcus faecalis R712]
gi|293388870|ref|ZP_06633356.1| ribonuclease HI [Enterococcus faecalis S613]
gi|312907696|ref|ZP_07766687.1| ribonuclease HI [Enterococcus faecalis DAPTO 512]
gi|312910314|ref|ZP_07769161.1| ribonuclease HI [Enterococcus faecalis DAPTO 516]
gi|30179812|sp|P36921|EBSB_ENTFA RecName: Full=Cell wall enzyme ebsB
gi|29343742|gb|AAO81503.1| EbsB protein [Enterococcus faecalis V583]
gi|227073606|gb|EEI11569.1| ribonuclease H [Enterococcus faecalis TX0104]
gi|227177340|gb|EEI58312.1| ribonuclease H [Enterococcus faecalis HH22]
gi|256952265|gb|EEU68897.1| ribonuclease HI [Enterococcus faecalis Merz96]
gi|291079266|gb|EFE16630.1| ribonuclease HI [Enterococcus faecalis R712]
gi|291081795|gb|EFE18758.1| ribonuclease HI [Enterococcus faecalis S613]
gi|310626724|gb|EFQ10007.1| ribonuclease HI [Enterococcus faecalis DAPTO 512]
gi|311289587|gb|EFQ68143.1| ribonuclease HI [Enterococcus faecalis DAPTO 516]
gi|315576061|gb|EFU88252.1| ribonuclease HI [Enterococcus faecalis TX0309B]
gi|315580636|gb|EFU92827.1| ribonuclease HI [Enterococcus faecalis TX0309A]
Length = 135
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKKA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIEWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|156065811|ref|XP_001598827.1| hypothetical protein SS1G_00916 [Sclerotinia sclerotiorum 1980]
gi|154691775|gb|EDN91513.1| hypothetical protein SS1G_00916 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1179
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ G G G ++ + T + A A K
Sbjct: 880 DIQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKAL 939
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHKV 120
+ + + + S ++ + + ++ K+
Sbjct: 940 TLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGKI 999
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 1000 RVRWVPGHLDIPGNEIADKAAKEG 1023
>gi|329571876|gb|EGG53554.1| ribonuclease HI [Enterococcus faecalis TX1467]
Length = 135
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSSIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|330507541|ref|YP_004383969.1| ribonuclease HI [Methanosaeta concilii GP-6]
gi|328928349|gb|AEB68151.1| ribonuclease HI, putative [Methanosaeta concilii GP-6]
Length = 149
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 24/152 (15%)
Query: 9 VHAYTDGACSG-NPG-PGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAI---KA 59
+ Y DG C NPG +G L+ + G + TNN E + +
Sbjct: 2 ITVYFDGLCYPKNPGGVAAYGYLICRDKEPIWKGFGAVGEGRGMTNNVAEYEGLLAAARW 61
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L + K+ + DS V K + S + E +
Sbjct: 62 LNDEEIDEKIQIRGDSELVIKQ-------MKGEYRVNSATSKRYVPQIK----ELLVGKE 110
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
V W+ ++NE+ DR++R A S+ +
Sbjct: 111 VSFQWVP----REKNEEADRLSRVAYESYVRR 138
>gi|45360167|gb|AAS59203.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGASSRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
+ NE+VD++
Sbjct: 642 EGNEQVDKLVSAGIRK 657
>gi|68522025|gb|AAY98623.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + + Y DGA + G G + ++ + + + + A++
Sbjct: 580 LEKEPMAGIETFYVDGAANRETKIGKAGYVTDRGRQKVVTTTETTNQKAELLAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVTQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIRK 709
>gi|332638855|ref|ZP_08417718.1| ribonuclease HI [Weissella cibaria KACC 11862]
Length = 131
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA----LK 64
+ Y D A GNPGP G G+++ G + + TN+ E A I A
Sbjct: 3 IKLYADAATQGNPGPSGAGIVIVRDGTQSQQYEYLGDMTNHEAEFAATILAFEHLATLAD 62
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V+ YTDS V + + + L M V W
Sbjct: 63 AGDMVMFYTDSKLVADSIGKSY----------AKHYPAQIDRLMMLIDRYPI---VLTTW 109
Query: 125 IKGHAGNQENEKVDRIARNAAVS 147
I +++N+ ++A A
Sbjct: 110 IP----DRQNQGAHQLALQAIHK 128
>gi|256252577|dbj|BAH97686.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYTLGIISSQPTQSE-------------SPIVQQIIEELTKKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|256252567|dbj|BAH97677.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYTLGIISSQPTQSE-------------SPIVQQIIEELTKKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|255951480|ref|XP_002566507.1| Pc22g26400 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593524|emb|CAP99928.1| Pc22g26400 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 168
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 10/150 (6%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTA 62
+ Y+D + G G G + K + + S G + + EL+ A++
Sbjct: 16 TIVVYSDDS--GCEGYLGAATVALDKDLQAVESKQIQVGPMDRWSVHVAELIGIFYAVST 73
Query: 63 LKYPCKVLLYTDSS---YVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ T+ + + + + L +
Sbjct: 74 VFKISHQWPSTEHNGTTTATILCDSKTALQAIENPGNKSGQRIIHAILQAAAKVQANGIA 133
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L WI GH + N+ DR+A++AA K
Sbjct: 134 LRLQWIPGHCDDPGNDAADRLAKDAATPSK 163
>gi|326537203|emb|CCA30551.1| gag-pro-pol polyprotein [Xenotropic MuLV-related virus]
Length = 1724
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1170 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1226
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1227 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNRSEILALLKALFLPKRLSIIHCPGH 1286
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR AA+
Sbjct: 1287 QKGNSAEARGNRMADQAAREAAM 1309
>gi|288930955|ref|YP_003435015.1| ribonuclease H [Ferroglobus placidus DSM 10642]
gi|288893203|gb|ADC64740.1| ribonuclease H [Ferroglobus placidus DSM 10642]
Length = 210
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 21/145 (14%)
Query: 6 LREVHAYTDGACSG-NPG-PGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALT 61
++ V Y DGAC NPG +G ++ E K ++ TNN E A I+ L
Sbjct: 1 MKGV-LYFDGACLPVNPGGIATYGFVIITPSGEIVKEKGIAAEKGTNNIAEYTALIRGLE 59
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS + + K A K
Sbjct: 60 KALELGIDELIVRGDSQLAIYQMNGVY----------AVKSPNIIPLWQRAMELAGKFRK 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ W+ ++N D ++ A
Sbjct: 110 IRFEWVP----REQNSAADELSTQA 130
>gi|242089145|ref|XP_002440405.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
gi|241945690|gb|EES18835.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
Length = 341
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R ++ G TNN E A I L +
Sbjct: 207 DGACKGNPGKSGAGVIIRRLDGSVIALLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 266
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+G S+ + + W+ D+ + E +++ H
Sbjct: 267 R------CQGDSKLVCNQVRGDWRARSDNMAVLCDIAKELKETFLTFQIN------HVLR 314
Query: 132 QENEKVDRIARNAAVSFKNKI 152
+ N D A A +++
Sbjct: 315 EFNSDADVQANFGAQLAVDEV 335
>gi|156046084|ref|XP_001589597.1| reverse transcriptase [Sclerotinia sclerotiorum 1980]
gi|154693714|gb|EDN93452.1| reverse transcriptase [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1708
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 2/134 (1%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTD + + G G++ + N++ + +T +
Sbjct: 1421 IYTDASSTEKGIGIGVGIVAIQSNNRILYQER-SNIGTNQLVYNGELFGVTRAIEYASSI 1479
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
YT + +Q + + + + A ++ L W+ H
Sbjct: 1480 AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGA-EISLNWVPDHTS 1538
Query: 131 NQENEKVDRIARNA 144
+ NE D++A+ A
Sbjct: 1539 VEGNELADKLAKEA 1552
>gi|5059042|gb|AAD38882.1|AF119819_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S N G G+ +R T +
Sbjct: 595 YVDGAASRETNQGKAGY--------------------VTDRGRQKVITLPETTNQKTELQ 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYAMGIIQAKPDKSESDLVNQIIEQLIQKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|320091417|gb|ADW08945.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus]
Length = 1733
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAA 145
GN + N D+ AR AA
Sbjct: 1296 QKGNSAEARGNRMADQAAREAA 1317
>gi|11078529|gb|AAG29093.1|AF221065_1 putative gag-pro-pol polyprotein [DG-75 Murine leukemia virus]
Length = 1733
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAA 145
GN + N D+ AR AA
Sbjct: 1296 QKGNSAEARGNRMADQAAREAA 1317
>gi|63028017|gb|AAY27069.1| truncated polyprotein [Mus musculus castaneus]
Length = 1674
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAA 145
GN + N D+ AR AA
Sbjct: 1296 QKGNSAEARGNRMADQAAREAA 1317
>gi|145609594|ref|XP_001409613.1| hypothetical protein MGG_12502 [Magnaporthe oryzae 70-15]
gi|145017011|gb|EDK01374.1| hypothetical protein MGG_12502 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|3342104|gb|AAD12147.1| polymerase [Simian immunodeficiency virus]
Length = 1031
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G G+ + GKEK+ +TTN + EL A + AL KV
Sbjct: 625 YVDGAAEKVGKTGKAGY---ITQSGKEKVKE--LTDTTNQQAELEAVLMALQ--DSNSKV 677
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV K SQ + + + + + +V L W+ H
Sbjct: 678 NIVTDSQYVMKILSQRPTETEH-------------PIVKDIIEQCKQKDQVYLGWVPAHK 724
Query: 130 GNQENEKVDRIARNAAVSFK 149
G N++VD + +
Sbjct: 725 GIGGNQEVDHLVSKGIRQKQ 744
>gi|145611666|ref|XP_001411436.1| hypothetical protein MGG_09981 [Magnaporthe oryzae 70-15]
gi|145018918|gb|EDK03197.1| hypothetical protein MGG_09981 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PNDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|469241|gb|AAA44860.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1033
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + I M ++ A++ +V +
Sbjct: 616 YVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQKAELMAVLIALQ-----DSKEQVNI 670
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + +V L W+ H G
Sbjct: 671 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKERVYLTWVPAHKGI 717
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 718 GGNEKIDKL 726
>gi|290991161|ref|XP_002678204.1| predicted protein [Naegleria gruberi]
gi|284091815|gb|EFC45460.1| predicted protein [Naegleria gruberi]
Length = 817
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 13/137 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ +TDG+ N G + K +E +NN E+MA + A+ L
Sbjct: 490 NIHTDGSKIENQVGFGINIYNSENRSFKYSFKIHEEYSNNVAEIMAILTAIKMLPNHSNA 549
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++TDS + K S + + + L +KGH
Sbjct: 550 NVHTDSQVAIEVL------------KKSYRGDFQGFQEEFFGTIKDKHLNIHLVKVKGHE 597
Query: 130 GNQENEKVDRIARNAAV 146
+ EN VD++A+ A
Sbjct: 598 -DPENIIVDKLAKEGAQ 613
>gi|170096448|ref|XP_001879444.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645812|gb|EDR10059.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 236
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 38/173 (21%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKII------SGGEKETTNNRMELMAAIK-- 58
+ DGACS N G G+ + + TN R EL+AAI+
Sbjct: 62 IVFIDGACSNNGREDAKAGLGITIGDDESYCWSIAVNDAADPNGPRTNQRAELLAAIEGL 121
Query: 59 --------------------------ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQN 92
++ ++ DS YV KG ++W+ W+
Sbjct: 122 QLLANVNRLNAIHEAMGMGDEHHKPARRNTDEFGPTYVVVADSEYVVKGITEWLPTWRVR 181
Query: 93 GWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI-KGHAGNQENEKVDRIARNA 144
W+T+ K N+DL++K E + + D + H N K DR+A+ A
Sbjct: 182 DWRTAAGKRPTNLDLFLKLDEVTMSLEKDGITVGFWHIPRAYNHKADRLAKLA 234
>gi|156039980|ref|XP_001587097.1| hypothetical protein SS1G_12126 [Sclerotinia sclerotiorum 1980]
gi|154696183|gb|EDN95921.1| hypothetical protein SS1G_12126 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 455
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 6/140 (4%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ N G G+G + + E A
Sbjct: 299 DDIVIFSDGSKQAN-GSTGYGFVEYQNNYKICEGSFALEKMKEVYNTKAIAALEGLRAAI 357
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + + + S +K + + V + W+
Sbjct: 358 VSIEARIATDIWICLDNIEVATRLLSNSIGSSQKIFTSFRQL---ASSWLNGTVRIRWVP 414
Query: 127 GHAGNQENEKVDRI--ARNA 144
GH NE +++ A A
Sbjct: 415 GHKDIAGNEAANKVIKANAA 434
>gi|154270264|ref|XP_001535988.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410059|gb|EDN05447.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 254
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 48 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 91
>gi|37935871|gb|AAO47121.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYTLGIISSQPTQSE-------------SPIVQQIIEELTKKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|73913775|gb|AAZ91758.1| pol protein [Human immunodeficiency virus 1]
gi|212383209|gb|ACJ25896.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA N G G + ++ + + A++ +V +
Sbjct: 592 YVDGAADRNTKIGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|55139291|gb|AAV41311.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 842
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 592 LEKEPMTGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ- 650
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 651 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDNSESELVNQIIEELIKKER 693
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 694 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 721
>gi|154269790|ref|XP_001535810.1| hypothetical protein HCAG_09260 [Ajellomyces capsulatus NAm1]
gi|150409831|gb|EDN05270.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 73 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 116
>gi|40796124|ref|NP_955577.1| pol gene polyprotein [Feline leukemia virus]
Length = 1210
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 11/149 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V E I + T+ + + A+ + K+
Sbjct: 646 YTDGSSFIRNGEREAGAAV---TTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKL 702
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + +EA ++ + GH
Sbjct: 703 TVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGH 762
Query: 129 A-GN----QENEKVDRIARNAAVSFKNKI 152
G+ + N D A+ AA + +
Sbjct: 763 QKGDSPQAKGNRLADDTAKKAATETHSSL 791
>gi|40796126|ref|NP_955579.1| reverse transcriptase [Feline leukemia virus]
Length = 669
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 11/149 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V E I + T+ + + A+ + K+
Sbjct: 521 YTDGSSFIRNGEREAGAAV---TTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKL 577
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + +EA ++ + GH
Sbjct: 578 TVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGH 637
Query: 129 A-GN----QENEKVDRIARNAAVSFKNKI 152
G+ + N D A+ AA + +
Sbjct: 638 QKGDSPQAKGNRLADDTAKKAATETHSSL 666
>gi|9630708|ref|NP_047255.1| Gag-Pro-Pol precursor polyprotein gPr80 [Feline leukemia virus]
gi|3420023|gb|AAC31801.1| gag-pol precursor polyprotein gPr80 [Feline leukemia virus]
Length = 1786
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 11/149 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V E I + T+ + + A+ + K+
Sbjct: 1222 YTDGSSFIRNGEREAGAAV---TTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKL 1278
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + +EA ++ + GH
Sbjct: 1279 TVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGH 1338
Query: 129 A-GN----QENEKVDRIARNAAVSFKNKI 152
G+ + N D A+ AA + +
Sbjct: 1339 QKGDSPQAKGNRLADDTAKKAATETHSSL 1367
>gi|242815170|ref|XP_002486517.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714856|gb|EED14279.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 245
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S ++ A A
Sbjct: 49 DIVIFSDGSRLVDGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDVEAEAALAGAQAAIA 107
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 108 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 167
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ HA ENE D A+ A S
Sbjct: 168 IRWVPRHAKIPENEAADLAAKEGAAS 193
>gi|145602850|ref|XP_362338.2| hypothetical protein MGG_13758 [Magnaporthe oryzae 70-15]
gi|145011218|gb|EDJ95874.1| hypothetical protein MGG_13758 [Magnaporthe oryzae 70-15]
Length = 292
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 5/141 (3%)
Query: 6 LREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ YTDG+ N G+G ++ + +G T + + AI AL L
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWA-AFRAGLEFAAGSASITPESHVFDAEAIGALKGL 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ ++ + I + + ++S + + + +V +
Sbjct: 63 TGGSQGSSQAPGIWICVDSTSVIWGLRGDAPRSS--QWAFLEFHNLVDLLRKQGTEVRVR 120
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W GH G N++ D +A+
Sbjct: 121 WCPGHQGIPGNDRADELAKAG 141
>gi|257866115|ref|ZP_05645768.1| RNase H [Enterococcus casseliflavus EC30]
gi|257872445|ref|ZP_05652098.1| RNase H [Enterococcus casseliflavus EC10]
gi|257800049|gb|EEV29101.1| RNase H [Enterococcus casseliflavus EC30]
gi|257806609|gb|EEV35431.1| RNase H [Enterococcus casseliflavus EC10]
Length = 138
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GNPGP G G+++ + I+ ++TN++ E + AL +
Sbjct: 2 LKVYLDASTKGNPGPSGGGIVIVGTDLHEQIAFPLPDSTNHQAEFAVMVNAL-------Q 54
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+L+ K Q K K + L + W+
Sbjct: 55 LLIDKGLQEQTIMLYTDSKVVAQTIDKNYTKNPAFSDYLTEIQYLLKQFALAIIQWVP-- 112
Query: 129 AGNQENEKVDRIARNA---AVSFKNK 151
+N+ D +AR A+ K++
Sbjct: 113 --ESQNKGADHLARQGLAKAMKLKDR 136
>gi|28827198|gb|AAO46152.1| pol protein [Recombinant M-MuLV/RaLV retrovirus]
Length = 1204
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 643 YTDGSSYLVNGERKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 699
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV-KNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K + ++ ++ + GH
Sbjct: 700 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKTEILALLAALFLPKRLSIIHCPGH 759
Query: 129 A-GN----QENEKVDRIARNAAV-----SFKNK 151
G+ + N D AR AA+ S K++
Sbjct: 760 QKGHSPEARGNRLADVSAREAAMGTQVLSLKDQ 792
>gi|78043013|ref|YP_359703.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
gi|77995128|gb|ABB14027.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
Length = 148
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKE--KIISGGEKETTNNRMELMAAIKALTAL 63
++ + DG GNPGP +++ + E S TTNN E A A AL
Sbjct: 1 MK-YKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLAL 59
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + ++ + Q NG + +K I +K + A+ KV L
Sbjct: 60 TFLAQKHGKVEAEIFAD---SELMVKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTL- 115
Query: 124 WIKGHAGNQENEKVDRIAR 142
H + N+ DR+
Sbjct: 116 ---SHVYRENNKAADRLVN 131
>gi|156032633|ref|XP_001585154.1| hypothetical protein SS1G_14014 [Sclerotinia sclerotiorum 1980]
gi|154699416|gb|EDN99154.1| hypothetical protein SS1G_14014 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 322
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 8 EVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ G G G ++ + T + A A K
Sbjct: 23 DIQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKAL 82
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHKV 120
+ + + + S ++ + + ++ K+
Sbjct: 83 TLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGKI 142
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W+ GH NE D+ A+
Sbjct: 143 RVRWVPGHLDIPGNEIADKAAKEG 166
>gi|242824730|ref|XP_002488316.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218713237|gb|EED12662.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 590
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 291 DIVIFSDGSRLVDGCAGG-GYIGLQAHHQFLRSSLSYGHGKEIFDAEAEAALAGAQAAIA 349
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 350 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKGGSIQ 409
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D A+ A S
Sbjct: 410 IRWVPGHAKIPENEAADLAAKEEAASI 436
>gi|313637243|gb|EFS02751.1| ribonuclease HI [Listeria seeligeri FSL S4-171]
Length = 151
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPC 67
+ DGA +GNPG G GV+L+ +G + ++ TN+ E +A L A K
Sbjct: 2 EVFVDGASAGNPGLSGAGVVLKAEGVYEQLAIPLAIMTNHEAEFVAIKLGLEAALKKKAT 61
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ LY+DS + + + +++ ++ ++ V+
Sbjct: 62 FIRLYSDSKVAIEAIQKRHA---------KNPLFKPHLEEILRMSDSLELFFVEWR---- 108
Query: 128 HAGNQENEKVDRIARNAA 145
+N++ D++AR A
Sbjct: 109 --NVAQNKQADQLARQAI 124
>gi|242816423|ref|XP_002486774.1| hypothetical protein TSTA_107430 [Talaromyces stipitatus ATCC
10500]
gi|218715113|gb|EED14536.1| hypothetical protein TSTA_107430 [Talaromyces stipitatus ATCC
10500]
Length = 203
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 38 IISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTS 97
E + E + AI+ Y + YTD+ + Q +
Sbjct: 34 WWEPPEARIDDTHEEAIKAIEPRGDNPYEATI--YTDNQAAIRATCQPGRSS-------G 84
Query: 98 DKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ + + ++ +V L W GH G NEK D++A+ AA
Sbjct: 85 QYIIRRIVRHLGLLRDNRSRWRVRLQWDPGHEGVPGNEKADQLAKLAA 132
>gi|168699254|ref|ZP_02731531.1| ribonuclease H [Gemmata obscuriglobus UQM 2246]
Length = 212
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 13/136 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ DGA GNPG + V+L R + +NN E A ++ L
Sbjct: 6 TMHIDGASRGNPGAAAYAVVLARPGLPVVEEADTIGTASNNVAEYTALVEGLGLAAELGV 65
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L + FS +Q K V + ++
Sbjct: 66 KQL--------QVFSDSELMVKQMAGAYKVKNEDLRTLYEEACRLRKQFESVTITHVR-- 115
Query: 129 AGNQENEKVDRIARNA 144
++N++ D I A
Sbjct: 116 --REQNKRADAIGNEA 129
>gi|59003579|gb|AAW83583.1| pol protein [Human immunodeficiency virus 1]
gi|212383192|gb|ACJ25889.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 590 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 648
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 649 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 691
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 692 VYLSWVPAHKGIGGNEQVDKLVSKGIRK 719
>gi|2764754|emb|CAA05910.1| RNaseH homologue [Ruminococcus flavefaciens]
Length = 39
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARN 143
H+V W+KGHAG+ ENE+ DR+A
Sbjct: 7 HEVSFNWVKGHAGHPENERCDRLAVE 32
>gi|212382641|gb|ACJ25638.1| pol protein [Human immunodeficiency virus 1]
Length = 915
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 592 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 650
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 651 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKER 693
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 694 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 721
>gi|154761384|gb|ABS85542.1| putative gag-pro-pol polyprotein [Xenotropic murine leukemia virus]
Length = 1618
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1180 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKGEILALLKALFLPKRLSIIHCPGH 1296
Query: 129 A-GN----QENEKVDRIARNAA 145
GN + N D+ AR AA
Sbjct: 1297 QKGNSVEARGNRMADQAAREAA 1318
>gi|260892782|ref|YP_003238879.1| ribonuclease H [Ammonifex degensii KC4]
gi|260864923|gb|ACX52029.1| ribonuclease H [Ammonifex degensii KC4]
Length = 139
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 6/139 (4%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+R + + DGA GNPGP V+ + K + K + AL+
Sbjct: 1 MR-LTVHIDGASRGNPGPSACAVVFLDE-KGNLREIHAKLLGTATNNVAEWEALAWALEL 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + S + + ++ + ++ + K+ L +
Sbjct: 59 ALASYPQEELELDIRSDSLLVVRQFNGEYRIRSAELRTLAARVQALLKGNPNLKLSLRHV 118
Query: 126 KGHAGNQENEKVDRIARNA 144
+EN D++A A
Sbjct: 119 P----REENFLADKVANQA 133
>gi|38636806|dbj|BAD03047.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|38636983|dbj|BAD03243.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|125560347|gb|EAZ05795.1| hypothetical protein OsI_28030 [Oryza sativa Indica Group]
gi|125602385|gb|EAZ41710.1| hypothetical protein OsJ_26246 [Oryza sativa Japonica Group]
Length = 351
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 37/137 (27%), Gaps = 18/137 (13%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYPCKV 69
DGA GNPG G G ++R + G TNN E A I LT K +
Sbjct: 211 DGASKGNPGKAGAGAVIRRLDGTVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYI 270
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
DS V S + + + H
Sbjct: 271 RAQGDSKLVCNQVSDVWRARHDTMADLCKRVKEIKGRFHTFQIN--------------HV 316
Query: 130 GNQENEKVDRIARNAAV 146
+ N D A A
Sbjct: 317 LREFNTDADAQANLAVE 333
>gi|258645413|ref|ZP_05732882.1| putative ribonuclease H1 [Dialister invisus DSM 15470]
gi|260402764|gb|EEW96311.1| putative ribonuclease H1 [Dialister invisus DSM 15470]
Length = 201
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Query: 8 EVHAYTDGACSGN-PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V Y DG+ P +GV+ + + + EK ++ + +
Sbjct: 65 RVAVYVDGSYIPTIPDTFSFGVVFIH--HGTVETYAEKIIDAEEAQMRNVAGEIHGAVFA 122
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
L S ++ + + G ++K+ K + + + ++ V + +
Sbjct: 123 MGKCLEKGISEINLYYDYVGIEKWCTGEWKANKRGTKALREYYELIKGQLM--VHFHKVA 180
Query: 127 GHAGNQENEKVDRIARNA 144
H G NE D++A+NA
Sbjct: 181 SHTGVMYNEMADQLAKNA 198
>gi|242801970|ref|XP_002483880.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717225|gb|EED16646.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 326
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 145 DIIIFSDGSRLVDGRAGG-GYIRFQAHNQFLRSSLSYGHRKEVFDAEAEAALAGAQAAIA 203
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + V
Sbjct: 204 YSTAQFATNLWICLDNLEVATRLLSPSTGSSQEAFESFRTLAAGWPLRERLPHTKSGSVQ 263
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GH ENE D A+ A S
Sbjct: 264 IRWVPGHTKIPENEVADSAAKEGAAS 289
>gi|166368039|ref|YP_001660312.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
gi|166090412|dbj|BAG05120.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
Length = 279
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 17/151 (11%)
Query: 3 SKHLREVHAYTDGACSGNPGP-GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
K Y DG GNPG G V++ +G + + TNN E I L
Sbjct: 6 QKTDNSAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLE 65
Query: 62 ALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + + DS V K + +
Sbjct: 66 KAQELGLKSLEIRGDSQLVINQVKGDW----------KVKSDSLRPFYQRACQLVARFDR 115
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ WI+ +N D A + + K
Sbjct: 116 ISWRWIE----RSKNSLADAAANHCMDAAKK 142
>gi|158316831|ref|YP_001509339.1| bifunctional RNase H/acid phosphatase [Frankia sp. EAN1pec]
gi|158112236|gb|ABW14433.1| Phosphoglycerate mutase [Frankia sp. EAN1pec]
Length = 378
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 20/140 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAA---IKAL 60
R + DG GNPGP G+G L+R + TNN E ++A
Sbjct: 5 RRLVVEADGGSRGNPGPAGYGALVRDAGTGQVLAERAASIGTATNNVAEYEGLLAGLRAA 64
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L + + DS V + S K A+ +V
Sbjct: 65 AELDPGADIEVRMDSKLVVEQMSGRW----------KIKHPSMRPLAAQAAEIAAGLGRV 114
Query: 121 DLYWIKGHAGNQENEKVDRI 140
W+ N DR+
Sbjct: 115 RFVWVP----RARNGDADRL 130
>gi|110815944|sp|Q79666|POL_HV1MV RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1446
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + I M ++ A++ +V +
Sbjct: 1029 YVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQKAELMAVLIALQ-----DSKEQVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + +V L W+ H G
Sbjct: 1084 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKERVYLTWVPAHKGI 1130
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 1131 GGNEKIDKL 1139
>gi|242807798|ref|XP_002485031.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715656|gb|EED15078.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 18/127 (14%)
Query: 23 PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG- 81
PGG ++ E + G + + + A++ + + ++ D+
Sbjct: 55 PGG-----PWEHVEVPMGHGHEVFDAELVGVATALEWALERQPLGPIWVFLDAQNAIDRL 109
Query: 82 -FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
++ + + V + W+ GH+G + NE+ D+
Sbjct: 110 RSTRPGPGQALVLRAHKAAEKLALRGQ-----------PVTIQWVPGHSGIEGNEQADQA 158
Query: 141 ARNAAVS 147
A+ AA
Sbjct: 159 AKRAASK 165
>gi|145608987|ref|XP_001409125.1| hypothetical protein MGG_13321 [Magnaporthe oryzae 70-15]
gi|145016456|gb|EDK00886.1| hypothetical protein MGG_13321 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLIDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|310659055|ref|YP_003936776.1| pp-loop superfamily ATP-utilizing protein [Clostridium sticklandii
DSM 519]
gi|308825833|emb|CBH21871.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
[Clostridium sticklandii]
Length = 428
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALT--ALKYPC 67
Y+DG GNPG G ++ K + TNN E A ++ +
Sbjct: 4 LYSDGGSRGNPGEAAIGFVIYDGDKIVYEKARPIGIATNNIAEYTALLEGVEALIRLGVQ 63
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + D S+ + K + +K +++ D + ++
Sbjct: 64 DVEAFLD--------SELVVKQIKGEYKVKNQELKVIFDRIKDKINNFKSFSIN------ 109
Query: 128 HAGNQENEKVDRIARNA 144
H N++ DRI A
Sbjct: 110 HVKRAYNKEADRILNIA 126
>gi|313884834|ref|ZP_07818586.1| ribonuclease HI [Eremococcus coleocola ACS-139-V-Col8]
gi|312619525|gb|EFR30962.1| ribonuclease HI [Eremococcus coleocola ACS-139-V-Col8]
Length = 224
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 21/144 (14%)
Query: 10 HAYTDGACSGNPGP--GGWGVLLRYKGK-----EKIISGGEKETTNNRMELMAAIKALTA 62
+ DG+ + + G G+G L+ + + S + N + I A
Sbjct: 88 VVFVDGSFTNHDGRPRYGYGGLIFLPQQAPHQLCQGFSPDQYIDARNVAGEIRGIMAAID 147
Query: 63 LKYPCKV---LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V +Y D + + K + E +
Sbjct: 148 YLLDQAVTTAFIYYDYQGIEAWATGAW-----------SAKKPISQLYVNFLQERQGRIN 196
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
+ + H G + NE VDR+A+
Sbjct: 197 LHFCHVDSHTGVEYNEVVDRLAKK 220
>gi|3776305|gb|AAC64711.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ KV +
Sbjct: 441 YVDGAANRNTKLGKAGYVTEQGKQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 496 VTDSQYALGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 542
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 543 GGNEKIDKL 551
>gi|268530932|ref|XP_002630592.1| C. briggsae CBR-RNH-1.1 protein [Caenorhabditis briggsae]
Length = 482
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 6/137 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ YTDG+ G G+ + + +N A+K
Sbjct: 302 SLIMYTDGSYLKREHRSGIGIFVAPGHELNRSQRIHGNIQDNNFAEFLAVKTALQNALKN 361
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ Y + V + + + TS ++ + VD +
Sbjct: 362 E--TYRNQKIVIRTDCLNVIEALSGVRGTSYPGLKSEVE----SLAKYFPKGVDFQHVYA 415
Query: 128 HAGNQENEKVDRIARNA 144
H G+ NE D A A
Sbjct: 416 HEGDPGNELADMFAGIA 432
>gi|242824212|ref|XP_002488213.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
gi|218713134|gb|EED12559.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
Length = 874
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 589 VTIQWVPGHSGIEGNEQADQAAKRAASK 616
>gi|145603643|ref|XP_001404729.1| hypothetical protein MGG_13272 [Magnaporthe oryzae 70-15]
gi|145011833|gb|EDJ96489.1| hypothetical protein MGG_13272 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145613068|ref|XP_001412589.1| hypothetical protein MGG_12493 [Magnaporthe oryzae 70-15]
gi|145020122|gb|EDK04350.1| hypothetical protein MGG_12493 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFTAGSAFITPESHVFDAEAIGALRGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|134046128|ref|YP_001097614.1| ribonuclease H [Methanococcus maripaludis C5]
gi|132663753|gb|ABO35399.1| ribonuclease H [Methanococcus maripaludis C5]
Length = 201
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 7 REV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTAL 63
+++ +A+ DG+ + G G L+ + G EK I G ++E + R + + A+
Sbjct: 65 KDIMYAWVDGSFNLRNNEYGAGALIIFNGMEKEIKSKGNDEELSKMRNVAGEILASELAM 124
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+Y + Y + + I+ K + ++
Sbjct: 125 EYAVSKNVKNLVIYHDYLGIEKWCTGKW------KTNKAGTIEYKEKCKNYLKRLNIEFL 178
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+K H+ ++ NE D++A+ A
Sbjct: 179 KVKAHSEDKNNEIADKLAKEA 199
>gi|282856848|ref|ZP_06266107.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
gi|282585358|gb|EFB90667.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
Length = 218
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ A+ DGA GNPG G G+++ + N A+ L
Sbjct: 2 IRAHFDGASRGNPGEAGAGMVIYDGERAIWRRALPLGMKTNNEAEYMALSLLVDELERRG 61
Query: 69 VL---LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ + DS V + K + L +E + W+
Sbjct: 62 LKNAEIRGDSKLVISQVTGQW-----------KIKEPRLKALADPIIERIRALQARCRWV 110
Query: 126 KGHAGNQENEKVDRIARNA 144
+N + DR++ A
Sbjct: 111 P----RAQNAEADRLSNVA 125
>gi|212383177|gb|ACJ25882.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 592 LEKEPMTGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ- 650
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 651 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDNSESELVNQIIEELIKKER 693
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 694 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 721
>gi|300910263|ref|ZP_07127723.1| ribonuclease H [Lactobacillus reuteri SD2112]
gi|300892911|gb|EFK86271.1| ribonuclease H [Lactobacillus reuteri SD2112]
Length = 141
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 23/142 (16%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKALTA 62
+ +TD A GNPGP G G+++ K+ + +
Sbjct: 12 IKIFTDAATKGNPGPTGLGIIIIANHKQIQLAIPVDKESMDNHHGEFAAAHFGFKYLIDH 71
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+L YTDS + + + + + + V
Sbjct: 72 FSNNETILFYTDSRILSDAIGKNYT--KHYQKELAALNPLLQ-----------HFPTVVT 118
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
WI +N +A A
Sbjct: 119 QWIP----ESQNRGAHNLANQA 136
>gi|119181956|ref|XP_001242142.1| hypothetical protein CIMG_06038 [Coccidioides immitis RS]
Length = 347
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 29/164 (17%)
Query: 1 MDSKHLREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISG-----GEKETTNNRME 52
M K + Y DGAC N G + + + K + TN R E
Sbjct: 1 MVYKMM----IYVDGACRRNGSDNAIGAAAAVHKKRHGTKPHCWARRLEAYESPTNQRAE 56
Query: 53 LMAAI---------KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK 103
++A I + +++DS Y + W++KW QN W ++ V
Sbjct: 57 IIAIILGLEMALDKHQQLRSNPVLDITIHSDSRYAVNCMNIWVEKWIQNNWINAEGNEVA 116
Query: 104 NIDLWMK----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
N DL + + V WI N DR
Sbjct: 117 NRDLIEEASDLDDKLQDLGDVTYTWIP----RSRNTDADRHCNE 156
>gi|26554395|ref|NP_758329.1| ribonuclease H-related protein [Mycoplasma penetrans HF-2]
gi|26454405|dbj|BAC44733.1| ribonuclease H-related protein [Mycoplasma penetrans HF-2]
Length = 220
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 18/146 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-----------SGGEKETTNNRMELMAAI 57
V + DG+ + G+G+L+ + K+ N E++ +
Sbjct: 76 VSIFVDGSYNKFLQQIGYGILIINSSNKNDWIKINNKLTEKEFNEYKKHLNISGEIIGTL 135
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+A+ + Y + N + + + S
Sbjct: 136 EAIKYCVNHNLNKIKIYYDY-------EGIEKWANNSWDAKTPISLMYKQSLSQLLKSFN 188
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARN 143
+ +K H+ + N+ D +A+
Sbjct: 189 ISLMFQKVKAHSDIEYNDIADSLAKQ 214
>gi|145614951|ref|XP_001414158.1| hypothetical protein MGG_00037 [Magnaporthe oryzae 70-15]
gi|145021842|gb|EDK05919.1| hypothetical protein MGG_00037 [Magnaporthe oryzae 70-15]
Length = 337
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|130672|sp|P23426|POL_VILV1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|335856|gb|AAA17524.1| 5' end uncertain [Visna/Maedi virus]
Length = 1105
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A + + +
Sbjct: 577 YTDGGKKN--GRGSLGYIASTGEKFRIYEEGTNQQLELRAIEEACKQGPEKMN------I 628
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + K+ ++W+ GH G
Sbjct: 629 VTDSRYAYEFMLRNWDEEVIRNPIQARIMELMHNKE-----------KIGVHWVPGHKGI 677
Query: 132 QENEKVDR------IARNAAVSFKNK 151
+NE++DR +A+ + +
Sbjct: 678 PQNEEIDRYISEIFLAKEGRGILQKR 703
>gi|242770758|ref|XP_002342044.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218725240|gb|EED24657.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 208
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 27 DIVIFSDGSRLIDGRVGG-GYIRIQAHHQFLRSSLSYGHGKEVFDTEAEAALAGAQAVIA 85
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 86 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 145
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GH ENE D A+ AVS
Sbjct: 146 IRWVPGHTKIPENEAADLAAKEKAVSI 172
>gi|154273212|ref|XP_001537458.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415970|gb|EDN11314.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 265
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 56 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 99
>gi|325570260|ref|ZP_08146126.1| ribonuclease HI [Enterococcus casseliflavus ATCC 12755]
gi|325156743|gb|EGC68917.1| ribonuclease HI [Enterococcus casseliflavus ATCC 12755]
Length = 138
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 22/150 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT----ALK 64
+ Y D + GNPGP G G+++ + I+ ++TN++ E + AL
Sbjct: 2 LKVYLDASTKGNPGPSGGGIVIVGTDLHEQIAFPLPDSTNHQAEFAVMVNALQLLIDKGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++LYTDS V + + T + + ++ +
Sbjct: 62 QEQTIMLYTDSKVVAQTIDKN---------YTKNPAFSDYLTEIQCLLKQFPLAIIQW-- 110
Query: 125 IKGHAGNQENEKVDRIARNA---AVSFKNK 151
+N+ D +AR A+ K++
Sbjct: 111 ----IPESQNKGADHLARQGLAKALKLKDR 136
>gi|224161120|ref|XP_002200222.1| PREDICTED: similar to Pol polyprotein, partial [Taeniopygia
guttata]
Length = 1042
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 10 HAYTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ DG+ G+ ++ + SG +T + + + AI L
Sbjct: 541 KLFVDGSSRVVEGQRRSGYAIVGGPDLEVIE-SGALDKTWSAQACEIYAILRALELLEGK 599
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIK 126
+ +YTDS Y + + K W++ G S + + + L + + A ++ + +K
Sbjct: 600 EGTIYTDSKYGYGVVHTFGKLWEERGLVNSQGRDLIHQKLIVALLRALRGPTRIAVVHLK 659
Query: 127 GHAG-----NQENEKVDRIARNAA 145
GH ++ N D A+ AA
Sbjct: 660 GHQRGMDYRSRGNNAADYEAKKAA 683
>gi|321453153|gb|EFX64418.1| hypothetical protein DAPPUDRAFT_266424 [Daphnia pulex]
Length = 352
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
AYTDG+ + + G V++ E+ TT +R + ++A + V
Sbjct: 69 IAYTDGSLNKSTGKTTSAVIIPSLN-------IEEATTLSRNSSVFTVEAEAINRTLELV 121
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
D FS Q +K + N L SA K++LYWI H
Sbjct: 122 YHLDDEVAKLTIFSDSRSVVQSIESPKKEKYPIINAILTTADNLKSAGTKINLYWIPSHV 181
Query: 130 GNQENEKVDRIARNAAVSF 148
G N DR+A +
Sbjct: 182 GIPGNGAADRLASEESNQL 200
>gi|994732|gb|AAC78249.1| polymerase [Rat leukemia virus]
Length = 672
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 111 YTDGSSYLVNGEQKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 167
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV-KNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K + ++ ++ + GH
Sbjct: 168 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKTEILALLAALFLPKRLSIIHCPGH 227
Query: 129 A-GN----QENEKVDRIARNAAV-----SFKNK 151
G+ + N D AR AA+ S K++
Sbjct: 228 QKGHSPEARGNRLADVSAREAAMGTQVLSLKDQ 260
>gi|301508600|gb|ADK78262.1| pol protein [Simian immunodeficiency virus]
Length = 1023
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGN--PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + +G+EK+ ++TTN + EL A + AL KV
Sbjct: 615 YVDGAANRNSKQGKAGY---ITDRGREKVKE--LEDTTNQKAELEAVLLALKDSGK--KV 667
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV TSD V+ I + E +V L W+ H
Sbjct: 668 NIVTDSQYVFGIL--------AGSPDTSDSPLVQQIIEQLIGKE-----EVYLSWVPAHK 714
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 715 GIGGNEEVDKLVSKGIRQ 732
>gi|242826577|ref|XP_002488670.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712488|gb|EED11914.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 655
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ + DG+ + GG G + + + S + A A
Sbjct: 356 DIVIFLDGSRLVDGCAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 414
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 415 YPTAQFATNLWVCLDNLEVATRLLSPSTGSSQEIFESFRTLTAAWPLRKRLPHTKSGSIQ 474
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA ENE D A+ A S
Sbjct: 475 IRWVPGHAKIPENEAADLAAKEGAAS 500
>gi|37935908|gb|AAP42148.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ V +
Sbjct: 592 YVDGAANKNTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEXVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYALGIISSQPTQSE-------------SPIVQQIIEELTRKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|302815267|ref|XP_002989315.1| hypothetical protein SELMODRAFT_427944 [Selaginella moellendorffii]
gi|300142893|gb|EFJ09589.1| hypothetical protein SELMODRAFT_427944 [Selaginella moellendorffii]
Length = 911
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 25/165 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKI---------------------ISGGEKETTN 48
+ +TDG+ G+G+ R + + E + +
Sbjct: 92 NVFTDGSFISAQNKAGYGIFYRCQEQNHCLARNVIVGSTITFQLSSDPSRPMPLEIDLST 151
Query: 49 NRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
+++ M + +S S + + +
Sbjct: 152 HKVSSMTMELLAILEGIVYVQSFWKQTSIFLYTDSLESLYLVEKFQRKPSNLRYHVYENI 211
Query: 109 MKFV----EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + + S ++ L+ +K HA NE DR+A A S +
Sbjct: 212 LVAIAAAAQQSKVQRIHLFKVKAHANIFGNEAADRLAHMGAASGR 256
>gi|154287184|ref|XP_001544387.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408028|gb|EDN03569.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 281
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 26 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 69
>gi|309360072|emb|CAP31913.2| CBR-RNH-1.1 protein [Caenorhabditis briggsae AF16]
Length = 519
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 11/144 (7%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ ++ YTDG+ G G+ + + +N A+K
Sbjct: 342 LSPTNM-----YTDGSYLKREHRSGIGIFVAPGHELNRSQRIHGNIQDNNFAEFLAVKTA 396
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ Y + V + + + TS ++ + V
Sbjct: 397 LQNALKNE--TYRNQKIVIRTDCLNVIEALSGVRGTSYPGLKSEVE----SLAKYFPKGV 450
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
D + H G+ NE D A A
Sbjct: 451 DFQHVYAHEGDPGNELADMFAGIA 474
>gi|194468022|ref|ZP_03074008.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
gi|194452875|gb|EDX41773.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
Length = 131
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 23/142 (16%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKALTA 62
+ +TD A GNPGP G G+++ K+ + +
Sbjct: 2 IKIFTDAATKGNPGPTGLGIIIIANHKQIQLAIPVDKERMDNHHGEFAAAHFGFKYLIDH 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+L YTDS + + + + + + V
Sbjct: 62 FSNNETILFYTDSRILSDAIGKNYT--KHYQKELAALNPLLQ-----------HFPTVVT 108
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
WI +N +A A
Sbjct: 109 QWIP----ESQNRGAHNLANQA 126
>gi|261036341|gb|ACX54438.1| polymerase [Feline immunodeficiency virus]
Length = 996
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK E E +N + E+ A + AL + ++
Sbjct: 471 YIDGG--RKQGKAAKAAYWTNTGK---WQIMELEGSNQKAEVQALLLALKSGPEEMNII- 524
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY-WIKGHAG 130
TDS Y+ +Q + +W + +E K+ W+ GH G
Sbjct: 525 -TDSQYIINIINQ---------------QPDLMEGIWGEVLEEGRNKKIAFIDWVPGHKG 568
Query: 131 NQENEKVDRI 140
NE+VD++
Sbjct: 569 IPGNEEVDKL 578
>gi|242786247|ref|XP_002480768.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
gi|218720915|gb|EED20334.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
Length = 278
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 55 VTIQWVPGHSGIEGNEQADQAAKRAASK 82
>gi|59003569|gb|AAW83574.1| pol protein [Human immunodeficiency virus 1]
gi|212383190|gb|ACJ25888.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRNTKTGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYALGIL-------------QAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|154331049|ref|XP_001561964.1| ribonuclease H1 [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134059286|emb|CAM36985.1| putative ribonuclease H1 [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 228
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/222 (22%), Positives = 68/222 (30%), Gaps = 78/222 (35%)
Query: 1 MDSKHLREVHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEK---ETTNNRMELM 54
M S V Y DGACS N G+G + S TNNR EL
Sbjct: 1 MTSPSGTFVVVYVDGACSHNGTSQARAGYGGYYGSLSDPRNFSCAVPLTESQTNNRGELR 60
Query: 55 AAIKALTALKYPC----------------------------KVLLYTDSSYVHKGFSQWI 86
A I A+ +++YTDS YV G ++
Sbjct: 61 AVIHAIVQAFIDAGAPADALEATHRVDPSAWPLSDFSRPLLHLIIYTDSRYVIDGLTRHA 120
Query: 87 KKWQQNGWKTSDKKTVKNIDLWMKFVE--------------------------------- 113
K W QNG+ S K V+N DLW + +
Sbjct: 121 KAWVQNGFLLSTKGPVQNQDLWKQLIRLRDRYNTLYARQQYDQQRTQRWHGEHCGEADLV 180
Query: 114 ------ASAQHK-----VDLYWIKGHAGNQENEKVDRIARNA 144
H ++L ++GH+ NE D +A +
Sbjct: 181 EPLRHTCHNTHNNKSEGIELIHVRGHSKVHGNEMADSLAVSG 222
>gi|39972145|ref|XP_367463.1| hypothetical protein MGG_13359 [Magnaporthe oryzae 70-15]
gi|145016546|gb|EDK00976.1| hypothetical protein MGG_13359 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|224167948|ref|XP_002189768.1| PREDICTED: similar to Pol polyprotein, partial [Taeniopygia
guttata]
Length = 941
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 10 HAYTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ DG+ G+ ++ + SG +T + + + AI L
Sbjct: 495 KLFVDGSSRVVEGQRRSGYAIVGGPDLEVIE-SGALDKTWSAQACEIYAILRALELLEGK 553
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIK 126
+ +YTDS Y + + K W++ G S + + + L + + A ++ + +K
Sbjct: 554 EGTIYTDSKYGYGVVHTFGKLWEERGLVNSQGRDLIHRKLIVALLRALRGPTRIAVVHLK 613
Query: 127 GHAG-----NQENEKVDRIARNAA 145
GH ++ N D A+ AA
Sbjct: 614 GHQRGMDYRSRGNNAADYEAKKAA 637
>gi|195627916|gb|ACG35788.1| retrotransposon protein Ty3-gypsy subclass [Zea mays]
gi|238009648|gb|ACR35859.1| unknown [Zea mays]
Length = 336
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 35/135 (25%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPG G G ++R + G TNN E A I LT +
Sbjct: 200 DGASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYI 259
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ + + H
Sbjct: 260 RA-QGDSKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIR-----------HVLR 307
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 308 EYNSAADAQANFAVE 322
>gi|226495263|ref|NP_001141955.1| hypothetical protein LOC100274104 [Zea mays]
gi|194706572|gb|ACF87370.1| unknown [Zea mays]
Length = 192
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 35/135 (25%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPG G G ++R + G TNN E A I LT +
Sbjct: 56 DGASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYI 115
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ + + H
Sbjct: 116 RA-QGDSKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIR-----------HVLR 163
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 164 EYNSAADAQANFAVE 178
>gi|194700066|gb|ACF84117.1| unknown [Zea mays]
gi|219887863|gb|ACL54306.1| unknown [Zea mays]
Length = 269
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 35/135 (25%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPG G G ++R + G TNN E A I LT +
Sbjct: 133 DGASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYI 192
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ + + H
Sbjct: 193 RA-QGDSKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIR-----------HVLR 240
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 241 EYNSAADAQANFAVE 255
>gi|256252557|dbj|BAH97668.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ V +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQKAELMAVLIALQ-----DSKEAVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S T + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIIS---------AQPTQSDSPIVQQIIE----ELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|227833568|ref|YP_002835275.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|262184559|ref|ZP_06043980.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|227454584|gb|ACP33337.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
Length = 389
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 21/151 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALT 61
++ + + DG GNPG G G + + + +I +++TNN E ++ L
Sbjct: 1 MK-LVIFADGGSRGNPGIAGSGTAVYNEDRSQLLREIAYVVGQKSTNNVAEYHGLLRGLE 59
Query: 62 --ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V Y DS V + + K
Sbjct: 60 AAVELGADEVEFYMDSKLVVEQMNGRW----------KIKHPDMQKLAIEARRLLDQIPS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
L W+ +N D ++ A +
Sbjct: 110 FSLEWVP----RAKNSVADALSNVAMDAAAK 136
>gi|9626549|ref|NP_040840.1| pol polyprotein [Visna/Maedi virus]
gi|548571|sp|P35956|POL_VILVK RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|419488|pir||B45390 HIV-1 retropepsin (EC 3.4.23.16) - Maedi/Visna virus (strain
KV1772) (provirus)
gi|265827|gb|AAB25460.1| pol [Visna/Maedi virus]
gi|295459|gb|AAA48359.1| pol polyprotein [Visna/Maedi virus]
Length = 1101
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A + + +
Sbjct: 573 YTDGGKKN--GRGSLGYITSTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN------I 624
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + K+ ++W+ GH G
Sbjct: 625 VTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKE-----------KIGVHWVPGHKGI 673
Query: 132 QENEKVDR------IARNAAVSFKNK 151
+NE++DR +A+ + +
Sbjct: 674 PQNEEIDRYISEIFLAKEGRGILQKR 699
>gi|334393|gb|AAA91906.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1047
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ G G + + + + E T N+ + AIK P KV +
Sbjct: 631 YVDGACNRQSKEGKAGYITQQGKQRV----QQLENTTNQQAELTAIKMALEDSGP-KVNI 685
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + + L W+ H G
Sbjct: 686 VTDSQYAMGILT---------AQPTQSDSPLVEQIIAQMVQKEA----IYLQWVPAHKGI 732
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 733 GGNEEIDKLVSKGVRRI 749
>gi|37935941|gb|AAO47182.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ + M ++ A++ V +
Sbjct: 594 YVDGAANRNTKLGKAGYVTEQGKQKIVKLEETTNQKAELMAILLALQ-----DSKETVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + E + + +V L W+ H G
Sbjct: 649 VTDSQYALGIISSQPTQS-------------DSPLVQQIIEELTKKEQVYLAWVPAHKGI 695
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 696 GGNEKIDKL 704
>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 35/142 (24%), Gaps = 18/142 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALTA 62
R DGA GNPGP G +LR I E + M
Sbjct: 289 RSCVVEFDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYAL 348
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K + + DS V K +N + + +
Sbjct: 349 KKGYTSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEIN--------- 399
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
H N + D A A
Sbjct: 400 -----HVLRGLNSEADAQANLA 416
>gi|225424760|ref|XP_002266599.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 481
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 35/142 (24%), Gaps = 18/142 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALTA 62
R DGA GNPGP G +LR I E + M
Sbjct: 146 RSCVVEFDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYAL 205
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K + + DS V K +N + + +
Sbjct: 206 KKGYTSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEIN--------- 256
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
H N + D A A
Sbjct: 257 -----HVLRGLNSEADAQANLA 273
>gi|9828660|gb|AAB47724.2| Pol protein [Simian immunodeficiency virus]
Length = 1014
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++TTN + EL A + AL V +
Sbjct: 607 YVDGAANRNSQLGKAGYVTDRGRSRV---KHLQKTTNQQAELQAILMALEDST--GPVNI 661
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + ++ L W+ H G
Sbjct: 662 VTDSQYALGVLQGTPDQSE-------------SPLVEEIIQKLIKREQIYLSWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 709 GGNEQVDKLVSQGIRQ 724
>gi|145613056|ref|XP_001412583.1| hypothetical protein MGG_08221 [Magnaporthe oryzae 70-15]
gi|145020116|gb|EDK04344.1| hypothetical protein MGG_08221 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALRGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|325968368|ref|YP_004244560.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
gi|323707571|gb|ADY01058.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
Length = 191
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 8/146 (5%)
Query: 8 EVHAYTDGACSG-NPGPGG-WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ Y DGAC NPG G +G + S G + + T L
Sbjct: 2 HLLVYFDGACEPKNPGGVGTYGFAVYNDNDTI--SEGYGIACEPALNCTNNVAEYTGLIK 59
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ LL D + + + +T L+ K E + +V L WI
Sbjct: 60 ALECLLLHDYGESSIVVHGDSQLVIKQLTGIYNVRTEHLKPLFEKAHELLSHFRVRLEWI 119
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
+ N K D +++ A + + ++
Sbjct: 120 P----RELNSKADELSKRAYIEYLDE 141
>gi|219882726|ref|YP_002477890.1| ribonuclease H [Arthrobacter chlorophenolicus A6]
gi|219861732|gb|ACL42073.1| ribonuclease H [Arthrobacter chlorophenolicus A6]
Length = 317
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 10/139 (7%)
Query: 16 ACSGNPGPG----GWGVLLRYKGKEKIISGGEKE---TTNNRMELMAAIKALTALKYPCK 68
AC + G G G G +L Y I G R +AAI+
Sbjct: 141 ACDSSRGRGRTVNGCGYVLAYANGADPILGAYTAVSAHGGIRAGELAAIRRGLQSTLGHH 200
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID---LWMKFVEASAQHKVDLYWI 125
+L + + T + + D + + ++ + W+
Sbjct: 201 PVLREGIGDLKILTDSKAALEVLDRVSTGSLQPFDDTDSIAECKRILGSARGVNISYEWV 260
Query: 126 KGHAGNQENEKVDRIARNA 144
+GH G+ NE DR+A A
Sbjct: 261 RGHNGHPLNELADRLAVLA 279
>gi|321461849|gb|EFX72877.1| hypothetical protein DAPPUDRAFT_325814 [Daphnia pulex]
Length = 308
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S +P + + KE G T A
Sbjct: 136 SIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 195
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++Y+DSS S + + S+ + L W
Sbjct: 196 CPPEAIIYSDSSSAITAISSNSL----------SENEAITAIREIIASLKSSGTRTRLTW 245
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 246 IPSHTGIEGNERADRLA 262
>gi|242373745|ref|ZP_04819319.1| ribonuclease H [Staphylococcus epidermidis M23864:W1]
gi|242348565|gb|EES40167.1| ribonuclease H [Staphylococcus epidermidis M23864:W1]
Length = 130
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A GNPG ++++ + + + + E N+ E A + AL + +
Sbjct: 3 KIYFDAATKGNPGRSACAIVVKEESERHVFTHDLGEMDNHSAEWAAMLHALEHARELNVI 62
Query: 70 L--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LYTDS + + K + K + + + + + W+
Sbjct: 63 NALLYTDSKLIEDSVNSG-------RVKNAKFKPYFD----NMEILEQSFELMFVKWVP- 110
Query: 128 HAGNQENEKVDRIARNA 144
++N++ ++ A+ A
Sbjct: 111 ---REQNKEANQYAQQA 124
>gi|159906201|ref|YP_001549863.1| ribonuclease H [Methanococcus maripaludis C6]
gi|159887694|gb|ABX02631.1| ribonuclease H [Methanococcus maripaludis C6]
Length = 201
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 7 REV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTAL 63
++V +A+ DG+ + G G L+ + G EK I G +++ + R + + A+
Sbjct: 65 KDVMYAWVDGSFNLKNKEYGAGALVIFNGIEKEIKAKGNDEDLSKMRNVAGEILASELAM 124
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
Y + Y I+KW WKT+ T++ + +++ + ++
Sbjct: 125 DYAVSKNVKNLVIY---HDYLGIEKWCTGEWKTNKAGTIEYKEKCKNYLK---RLNIEFV 178
Query: 124 WIKGHAGNQENEKVDRIARN 143
+K H+G++ NE D++A+
Sbjct: 179 KVKAHSGDKNNEIADKLAKE 198
>gi|145601640|ref|XP_364601.2| hypothetical protein MGG_14323 [Magnaporthe oryzae 70-15]
gi|145010131|gb|EDJ94787.1| hypothetical protein MGG_14323 [Magnaporthe oryzae 70-15]
Length = 957
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 158 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALKGLQ 217
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 218 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLKF---------HNLVDLLRKQST 268
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ + +A+
Sbjct: 269 EVRVRWCPGHQGIPGNDRANELAKAG 294
>gi|82571330|gb|ABB84095.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLAETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|224128544|ref|XP_002199976.1| PREDICTED: similar to Pro-Pol polyprotein [Taeniopygia guttata]
Length = 1210
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 10 HAYTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ DG+ G+ ++ + SG +T + + + AI L
Sbjct: 724 KLFVDGSSRVVEGQRRSGYAIVGGADLEVIE-SGALDKTWSAQACEIYAILRALELLEGK 782
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIK 126
+ +YTDS Y + + K W++ G S + + + L + + A ++ + +K
Sbjct: 783 EGTIYTDSKYGYGVVHTFGKLWEERGLVNSQGRDLIHQKLIVALLRALRGPTRIAVVHLK 842
Query: 127 GHA-----GNQENEKVDRIARNAA 145
GH ++ N D A+ AA
Sbjct: 843 GHQQGMDYRSRGNNAADYEAKKAA 866
>gi|212383175|gb|ACJ25881.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ V +
Sbjct: 598 YVDGAANRDTKKGKAGYVTDRGRQKIIHLNETTNQKTELQAIQLALQ-----DSGSVVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|145601701|ref|XP_361237.2| hypothetical protein MGG_14356 [Magnaporthe oryzae 70-15]
gi|145010215|gb|EDJ94871.1| hypothetical protein MGG_14356 [Magnaporthe oryzae 70-15]
Length = 449
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 32/149 (21%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA---- 56
+D ++ YTDG+ + E R L A
Sbjct: 131 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGLEFAAGSA 174
Query: 57 -IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
I + + + ++ + S +
Sbjct: 175 SITPESHVFDAEAIGALKGLQ----AATKAQPGARIWICVDSTSVIWGLRGDAPRT---- 226
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 227 ---EVRVRWCPGHQGIPGNDRADELAKAG 252
>gi|88174648|gb|ABD39393.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKTVPLTETTNQKAELQAIQIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|223995379|ref|XP_002287373.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976489|gb|EED94816.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 149
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 7 REVHAYTDGACSGNP-GPGGWGVLLRYK--------GKEKIISGGEKETTNNRMELMAAI 57
V Y DGA NP GP G G L S +NN+ E I
Sbjct: 5 NRVVLYFDGASKNNPRGPAGCGFCLYEMDVYGADTQFITNGNSYLGYNVSNNQAEYQGLI 64
Query: 58 KALTALKY---PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
L+ + + +V + DS V + N + D+ +
Sbjct: 65 DGLSYILHNISCNRVYVRGDSEIVVRQMLGEYNVNSPNIRPYYNDAKSVLEDIEREVDFC 124
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ H Q+N + D++A A +
Sbjct: 125 DFR----------HISRQKNWEADQLANEAINDY 148
>gi|145614110|ref|XP_364116.2| hypothetical protein MGG_11290 [Magnaporthe oryzae 70-15]
gi|145021080|gb|EDK05209.1| hypothetical protein MGG_11290 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 6/141 (4%)
Query: 6 LREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++ YTDG+ N G+G ++ + +G T + + AI AL
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWA-AFRAGLEFAAGSASITPESHVFDAEAIGALK-- 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V + S + + S + + + +V +
Sbjct: 61 GLQAAVKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHNLVDLLRKQGT-EVRVR 119
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W GH G N++ D +A+
Sbjct: 120 WCPGHQGIPGNDRADELAKAG 140
>gi|329770219|ref|ZP_08261609.1| ribonuclease HI [Gemella sanguinis M325]
gi|328837025|gb|EGF86669.1| ribonuclease HI [Gemella sanguinis M325]
Length = 178
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 47/159 (29%), Gaps = 28/159 (17%)
Query: 12 YTDGA----CSGNP-----------GPGGWGVLLRYK--GKEKIISGGEKETTNNRMELM 54
Y DG+ NP G V+ + K S E + N EL
Sbjct: 6 YIDGSFQTFSKPNPEDTTKPIIHEICGFGCAVINPDGSITELKGASEFETHSHNITSELQ 65
Query: 55 AAIKALTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A AL + +Y D G ++ K + +
Sbjct: 66 ACYAALNHAITNNIKDIKIYHDLE---------GTSRWALGSWKTNNNETKQYAQDVHDM 116
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ + +KGH+G + NE D +A A + K
Sbjct: 117 QQQYGLNIQFEKVKGHSGVKYNELADSLADQAVQEYVAK 155
>gi|256847302|ref|ZP_05552748.1| RNase HI [Lactobacillus coleohominis 101-4-CHN]
gi|256715966|gb|EEU30941.1| RNase HI [Lactobacillus coleohominis 101-4-CHN]
Length = 129
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA----IKALTALK 64
+ +TD A NPGP G G ++ G++ ++ K +N+ E +AA +
Sbjct: 2 IKLFTDAATKDNPGPTGLGAVILVDGQQIQLTDHVKNASNHTGEFLAAQFGFQYLIEHYS 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
VL YTDS + + L V W
Sbjct: 62 PNEVVLFYTDSRLMSDAIGKHYS-------------KHYADQLNSLESLMQHFSTVITQW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
I +EN +A A
Sbjct: 109 IP----EKENHGAHHLANQA 124
>gi|227544607|ref|ZP_03974656.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
gi|227185414|gb|EEI65485.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
Length = 131
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 23/142 (16%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKALTA 62
+ +TD A GNPGP G G+++ K+ + +
Sbjct: 2 IKIFTDAATKGNPGPTGLGIIIIANHKQIQLAIPVDKESMDNHHGEFAAAHFGFKYLIDH 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+L YTDS + + + + + + V
Sbjct: 62 FSNNETILFYTDSRILSDAIGKNYT--KHYQKELAALNPLLQ-----------HFPTVVT 108
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
WI +N +A A
Sbjct: 109 QWIP----ESQNRGAHNLANQA 126
>gi|294102762|ref|YP_003554620.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617742|gb|ADE57896.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 198
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 19/142 (13%)
Query: 14 DGACSGNPGPGGWGVLLR----YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
DGA GNPG G G +L + +K G + + + L+ K+
Sbjct: 7 DGASRGNPGEAGAGAVLYNEEGHMVWQKFAYLGSQTNNEAEYGGLLLLLREIQLRGIKKI 66
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS V + + +LW + + W+
Sbjct: 67 VIRGDSRLVICQMKKEW-----------KVNSPHLKELWEEAQSLLKGCQATFEWVP--- 112
Query: 130 GNQENEKVDRIARNAAVSFKNK 151
+EN D ++ A K
Sbjct: 113 -RKENSNADLLSNKAIDEHSGK 133
>gi|145603996|ref|XP_366253.2| hypothetical protein MGG_10472 [Magnaporthe oryzae 70-15]
gi|145012104|gb|EDJ96760.1| hypothetical protein MGG_10472 [Magnaporthe oryzae 70-15]
Length = 291
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ +Y DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWIYVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|28827189|gb|AAO46146.1| pol protein [Recombinant M-MuLV/RaLV retrovirus]
Length = 746
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 185 YTDGSSYLVNGEQKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 241
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTV-KNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K + ++ ++ + GH
Sbjct: 242 SVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKTEILALLAALFLPKRLSIIHCPGH 301
Query: 129 A-GN----QENEKVDRIARNAAV-----SFKNK 151
G+ + N D AR AA+ S K++
Sbjct: 302 QKGHSPEARGNRLADVSAREAAMGTQVLSLKDQ 334
>gi|212382808|gb|ACJ25711.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|152967278|ref|YP_001363062.1| phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
gi|151361795|gb|ABS04798.1| Phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
Length = 366
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYK------GKEKIISGGEKETTNNRMELMAAIKAL 60
R + DG GNPGP G+G +++ + G L+A ++A
Sbjct: 3 RRLRVEADGGSRGNPGPAGYGAVVKDAATGEVLAEVAESIGRATNNVAEYRGLVAGLRAA 62
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
A+ V + DS V + S + K L + V
Sbjct: 63 QAVDPEASVEVRMDSKLVVEQMSGRWQ-----------VKHADMRALAQEARSLVRPGLV 111
Query: 121 DLYWIKGHAGNQENEKVDRI 140
D WI +N DR+
Sbjct: 112 DFGWIP----RAQNSHADRL 127
>gi|288924295|ref|ZP_06418314.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
gi|288344357|gb|EFC78867.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
Length = 378
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 20/140 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAA---IKAL 60
R + DG GNPGP G+G L+R + + TNN E ++A
Sbjct: 5 RRLVIEADGGSRGNPGPAGYGALVRDPATGEVLAERAAAIGTATNNVAEYEGLLAGLRAA 64
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + DS V + S K + S V
Sbjct: 65 ADVAPDADLEVRMDSKLVVEQMSGRW----------KVKHPSMRPLVTEASGLVSRFPSV 114
Query: 121 DLYWIKGHAGNQENEKVDRI 140
W+ N DR+
Sbjct: 115 RFVWVP----RARNADADRL 130
>gi|256252547|dbj|BAH97659.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A++ V +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQKAELMAVLIALQ-----DSKEAVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S T + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIIS---------AQPTQSDSPIVQQIIE----ELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|57901089|gb|AAW57855.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G + +G++KI+S E T N+ + AI
Sbjct: 578 LEKEPMVGVETFYVDGAANRET-KMGKAGYVTDRGRQKIVSLNE---TTNQKAELQAIHL 633
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + K
Sbjct: 634 ALQDSG-SEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEK 679
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 680 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 707
>gi|74634|pir||GNLJG4 HIV-1 retropepsin (EC 3.4.23.16) - simian immunodeficiency virus
(African green monkey isolate)
Length = 1061
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GAC+ N G G + +Y + E T N+ + AIK P V + TD
Sbjct: 654 GACNRNSKEGKAGYISQYGKQRVET----LENTTNQQAKLTAIKMALEDSGP-NVNIVTD 708
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQEN 134
S Y + T + + + + ++ L W+ H G N
Sbjct: 709 SQYAMGILT---------AQPTQSDSPLVEQIIALMIQKQ----QIYLQWVPAHKGIGGN 755
Query: 135 EKVDRIARNAAV 146
E++D++
Sbjct: 756 EEIDKLVSKGIR 767
>gi|257884658|ref|ZP_05664311.1| RNase H [Enterococcus faecium 1,231,501]
gi|293553480|ref|ZP_06674108.1| ribonuclease HI [Enterococcus faecium E1039]
gi|257820496|gb|EEV47644.1| RNase H [Enterococcus faecium 1,231,501]
gi|291602357|gb|EFF32581.1| ribonuclease HI [Enterococcus faecium E1039]
Length = 137
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GNPGP G G+L+ Y+GK++ +S TN++ E +K L LK
Sbjct: 2 LKVYIDASTKGNPGPSGGGILIVYQGKQEQLSIPLSIGTNHQAEFEVFLKTLEFLKK--- 58
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D K K + K + L S + L W+
Sbjct: 59 ----NDLQNETIFCFSDSKTLVSTVDKNATKNELFLPYLQRIQELLSEFSLLILQWLP-- 112
Query: 129 AGNQENEKVDRIARNA 144
+N+ D +AR A
Sbjct: 113 --ENKNKGADNLARQA 126
>gi|257878218|ref|ZP_05657871.1| RNase H [Enterococcus faecium 1,230,933]
gi|257881001|ref|ZP_05660654.1| RNase H [Enterococcus faecium 1,231,502]
gi|257889583|ref|ZP_05669236.1| RNase H [Enterococcus faecium 1,231,410]
gi|257892477|ref|ZP_05672130.1| RNase H [Enterococcus faecium 1,231,408]
gi|258616272|ref|ZP_05714042.1| EbsB protein [Enterococcus faecium DO]
gi|260559263|ref|ZP_05831449.1| RNase H [Enterococcus faecium C68]
gi|261207796|ref|ZP_05922481.1| RNase H [Enterococcus faecium TC 6]
gi|289566248|ref|ZP_06446680.1| ribonuclease HI [Enterococcus faecium D344SRF]
gi|293559341|ref|ZP_06675883.1| ribonuclease HI [Enterococcus faecium E1162]
gi|293569839|ref|ZP_06680926.1| ribonuclease HI [Enterococcus faecium E1071]
gi|294616587|ref|ZP_06696363.1| ribonuclease HI [Enterococcus faecium E1636]
gi|294617897|ref|ZP_06697506.1| ribonuclease HI [Enterococcus faecium E1679]
gi|294622253|ref|ZP_06701307.1| ribonuclease HI [Enterococcus faecium U0317]
gi|314939749|ref|ZP_07846971.1| ribonuclease HI [Enterococcus faecium TX0133a04]
gi|314941750|ref|ZP_07848627.1| ribonuclease HI [Enterococcus faecium TX0133C]
gi|314948295|ref|ZP_07851687.1| ribonuclease HI [Enterococcus faecium TX0082]
gi|314952383|ref|ZP_07855390.1| ribonuclease HI [Enterococcus faecium TX0133A]
gi|314991998|ref|ZP_07857451.1| ribonuclease HI [Enterococcus faecium TX0133B]
gi|314995704|ref|ZP_07860794.1| ribonuclease HI [Enterococcus faecium TX0133a01]
gi|257812446|gb|EEV41204.1| RNase H [Enterococcus faecium 1,230,933]
gi|257816659|gb|EEV43987.1| RNase H [Enterococcus faecium 1,231,502]
gi|257825943|gb|EEV52569.1| RNase H [Enterococcus faecium 1,231,410]
gi|257828856|gb|EEV55463.1| RNase H [Enterococcus faecium 1,231,408]
gi|260075020|gb|EEW63336.1| RNase H [Enterococcus faecium C68]
gi|260078179|gb|EEW65885.1| RNase H [Enterococcus faecium TC 6]
gi|289161955|gb|EFD09823.1| ribonuclease HI [Enterococcus faecium D344SRF]
gi|291587587|gb|EFF19464.1| ribonuclease HI [Enterococcus faecium E1071]
gi|291590537|gb|EFF22270.1| ribonuclease HI [Enterococcus faecium E1636]
gi|291595842|gb|EFF27126.1| ribonuclease HI [Enterococcus faecium E1679]
gi|291598224|gb|EFF29319.1| ribonuclease HI [Enterococcus faecium U0317]
gi|291606705|gb|EFF36097.1| ribonuclease HI [Enterococcus faecium E1162]
gi|313590095|gb|EFR68940.1| ribonuclease HI [Enterococcus faecium TX0133a01]
gi|313593433|gb|EFR72278.1| ribonuclease HI [Enterococcus faecium TX0133B]
gi|313595500|gb|EFR74345.1| ribonuclease HI [Enterococcus faecium TX0133A]
gi|313599428|gb|EFR78271.1| ribonuclease HI [Enterococcus faecium TX0133C]
gi|313640978|gb|EFS05558.1| ribonuclease HI [Enterococcus faecium TX0133a04]
gi|313645276|gb|EFS09856.1| ribonuclease HI [Enterococcus faecium TX0082]
Length = 137
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GNPGP G G+L+ Y+GK++ +S TN++ E +K L LK
Sbjct: 2 LKVYIDASTKGNPGPSGGGILIVYQGKQEQLSIPLSIGTNHQAEFEVFLKTLEFLKK--- 58
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D K K + K + L S + L W+
Sbjct: 59 ----NDLQNETIFCFSDSKTLVSTVDKNATKNELFLPYLQRIQELLSEFSLLILQWLP-- 112
Query: 129 AGNQENEKVDRIARNA 144
+N+ D +AR A
Sbjct: 113 --ENKNKGADNLARQA 126
>gi|242824216|ref|XP_002488214.1| hypothetical protein TSTA_005900 [Talaromyces stipitatus ATCC
10500]
gi|218713135|gb|EED12560.1| hypothetical protein TSTA_005900 [Talaromyces stipitatus ATCC
10500]
Length = 252
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 63 VTIQWVPGHSGIEGNEQADQAAKRAASK 90
>gi|145602729|ref|XP_364970.2| hypothetical protein MGG_14161 [Magnaporthe oryzae 70-15]
gi|145011118|gb|EDJ95774.1| hypothetical protein MGG_14161 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1154
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 7/139 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC- 67
+ ++D + G G + K+ G + + ELMA A++ +
Sbjct: 849 ITVFSDAS--GQQNVLGAAAHII--QHRKVCIGSMEYWSVYTAELMAIYYAISLVLKIAL 904
Query: 68 -KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWI 125
S + Q + + E + + L W+
Sbjct: 905 ENWDTTASQQEPATILSDSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPLRLQWV 964
Query: 126 KGHAGNQENEKVDRIARNA 144
GH + NE DR+A+ A
Sbjct: 965 PGHYSDLGNEAADRLAKEA 983
>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae]
Length = 1292
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 14/151 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAI 57
S ++ ++D + N G ++ K+ + S G + EL+
Sbjct: 971 SSNM---VVFSDASGQNNQ--LGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIF 1025
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKW----QQNGWKTSDKKTVKNIDLWMKFVE 113
A++ + T ++ + + + + + +L
Sbjct: 1026 YAISLVLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAAAEL 1085
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + L WI GH + N+ D++AR A
Sbjct: 1086 KARGIPLRLQWIPGHCDDPGNDAADKLARMA 1116
>gi|145601503|ref|XP_365236.2| hypothetical protein MGG_01936 [Magnaporthe oryzae 70-15]
gi|145009567|gb|EDJ94223.1| hypothetical protein MGG_01936 [Magnaporthe oryzae 70-15]
Length = 1113
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 957 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 1016
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 1017 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 1067
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +++
Sbjct: 1068 RKQGTEVRVRWCPGHRGIPGNDRADELSKAG 1098
>gi|124361129|gb|ABN09101.1| Ribonuclease H [Medicago truncatula]
Length = 170
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 15/141 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTALKYP 66
+ DG+ GNPG G+G L+R I S +N +EL A + L
Sbjct: 12 LKINVDGSSFGNPGRAGFGGLIRNDVGGWIHGFSESCGRVSNLLVELYAILNGLQLAWDL 71
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ + Y + + T + + D +
Sbjct: 72 GFRIITLEPDY------KSALDLILDNDTTYHPHAIVLGRIRTLMSR-------DWSLLF 118
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H + NE D +A+ A S
Sbjct: 119 NHTLREGNECADWLAKYDAQS 139
>gi|87162851|gb|ABD28646.1| Ribonuclease H [Medicago truncatula]
Length = 208
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 13 TDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+CSG P G+G ++R SG ++T+ + + AI ++ V
Sbjct: 55 VDGSCSGIPTRAGYGGIIRNSAGLYLSCFSGFIADSTDILLAELTAIHRGFSIASDMGVN 114
Query: 71 ---LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
Y+DS + K+ D K + + +
Sbjct: 115 EMACYSDSLLSINLITGQASKYHAYAVLIQDIKDLLSSHNFSIQ---------------- 158
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + N+ D +A+ A S
Sbjct: 159 HCLREGNQCADFMAKFGASS 178
>gi|130671|sp|P03370|POL_VILV RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|335846|gb|AAA17521.1| pol polyprotein [Visna/Maedi virus]
gi|335850|gb|AAA48354.1| pol protein [Visna/Maedi virus]
Length = 1105
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A + + +
Sbjct: 577 YTDGGKKN--GRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN------I 628
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + K+ ++W+ GH G
Sbjct: 629 VTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKE-----------KIGVHWVPGHKGI 677
Query: 132 QENEKVDR------IARNAAVSFKNK 151
+NE++DR +A+ + +
Sbjct: 678 PQNEEIDRYISEIFLAKEGRGILQKR 703
>gi|301508610|gb|ADK78271.1| pol protein [Simian immunodeficiency virus]
Length = 1017
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + +GKEK+ ++TTN + EL A + AL +V
Sbjct: 609 YVDGAANRNSKLGKAGY---ITDRGKEKVKE--LEDTTNQKAELEAVLLALKDSGK--RV 661
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + + + + + +V L W+ H
Sbjct: 662 NIVTDSQYVFGILAGSPDTSE-------------SPLVQQIIEQLIGKEEVYLSWVPAHK 708
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 709 GIGGNEEVDKLVSRGIRQ 726
>gi|145605206|ref|XP_365461.2| hypothetical protein MGG_13731 [Magnaporthe oryzae 70-15]
gi|145013052|gb|EDJ97693.1| hypothetical protein MGG_13731 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|67553032|gb|AAY68625.1| pol protein [Human immunodeficiency virus 1]
gi|212383212|gb|ACJ25897.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 585 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ- 643
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y + + + + E + +
Sbjct: 644 ----DSGSEVNVVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKER 686
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 687 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 714
>gi|4469306|emb|CAA30658.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1061
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GAC+ N G G + +Y + E T N+ + AIK P V + TD
Sbjct: 654 GACNRNSKEGKAGYISQYGKQRVET----LENTTNQQAKLTAIKMALEDSGP-NVNIVTD 708
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQEN 134
S Y + T + + + + ++ L W+ H G N
Sbjct: 709 SQYAMGILT---------AQPTQSDSPLVEQIIALMIQKQ----QIYLQWVPAHKGIGGN 755
Query: 135 EKVDRIARNAAV 146
E++D++
Sbjct: 756 EEIDKLVSKGIR 767
>gi|56193058|gb|AAV84137.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G + +G++K++S E ++ +
Sbjct: 583 LEKEPMAGVETFYVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAILI--- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 -ALQDSGSEVNIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKER 684
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 685 VYLSWVPAHKGIGGNEQVDKLVSTGIRK 712
>gi|1498648|gb|AAB06450.1| Gag-Pol polyprotein [Mus musculus]
Length = 1734
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 -----AGNQENEKVDRIARNAAVS 147
A ++ N D+ AR AA+
Sbjct: 1297 QKGDSAEDRGNRLADQAAREAAIK 1320
>gi|6358691|gb|AAF07317.1|AF188114_2 Pol protein [Simian immunodeficiency virus]
Length = 1023
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G G+ K +TTN + EL A + AL K +V
Sbjct: 617 YVDGAAEKVGKTGKAGY-----VTQSGKEKVKELTDTTNQQAELEAVLLALRDSK--SRV 669
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV K SQ + + + E + +V L W+ H
Sbjct: 670 NIVTDSQYVIKVLSQRPTETEH-------------PVVKQIIEECKKKDQVYLGWVPAHK 716
Query: 130 GNQENEKVDRIARNAAVSFK 149
G N++VD + +
Sbjct: 717 GIGGNQEVDHLVSKGIRQKQ 736
>gi|212382732|gb|ACJ25676.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G + +G++K+I+ E ++ +
Sbjct: 587 LEKEPMAGVETFYVDGAANRET-KMGKAGYVTDRGRQKVITITETTNQKTELQAIQL--- 642
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 643 -ALQDSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 688
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 689 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 716
>gi|130673|sp|P23427|POL_VILV2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|335862|gb|AAA17529.1| 5' end uncertain [Visna/Maedi virus]
Length = 1105
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A + + +
Sbjct: 577 YTDGGKKN--GRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN------I 628
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + K+ ++W+ GH G
Sbjct: 629 VTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKE-----------KIGVHWVPGHKGI 677
Query: 132 QENEKVDR------IARNAAVSFKNK 151
+NE++DR +A+ + +
Sbjct: 678 PQNEEIDRYISEIFLAKEGRGILQKR 703
>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1393
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 14/151 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAI 57
S ++ ++D + N G ++ K+ + S G + EL+
Sbjct: 1072 SSNM---VVFSDASGQNNQ--LGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIF 1126
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKW----QQNGWKTSDKKTVKNIDLWMKFVE 113
A++ + T ++ + + + + + +L
Sbjct: 1127 YAISLVLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAAAEL 1186
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + L WI GH + N+ D++AR A
Sbjct: 1187 KARGIPLRLQWIPGHCDDPGNDAADKLARMA 1217
>gi|241781706|ref|XP_002400516.1| ribonuclease H1, putative [Ixodes scapularis]
gi|215508575|gb|EEC18029.1| ribonuclease H1, putative [Ixodes scapularis]
Length = 120
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 8 EVHAYTDGACSGNPGP-----GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
E H YTDGACS N G G GV + TNNR E+ AA +AL
Sbjct: 17 EYHVYTDGACSNNGGYNRTPQAGIGVYWGPNHPMNVSEPLPGRQTNNRAEIQAATRALYQ 76
Query: 63 LKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKT 96
++ V ++TDS ++ K +QW++ ++ T
Sbjct: 77 VREQGGRNVTVHTDSDFLVKSTTQWMEIGRKTEGST 112
>gi|28827192|gb|AAO46148.1| pol protein [Recombinant M-MuLV/RaLV retrovirus]
Length = 746
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 185 YTDGSSYLVNGEQKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 241
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K ++ ++ + GH
Sbjct: 242 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKGIKNKTEILALLAALFLPKRLSIIHCPGH 301
Query: 129 A-GN----QENEKVDRIARNAAV-----SFKNK 151
G+ + N D AR AA+ S K++
Sbjct: 302 QKGHSPEARGNRLADVSAREAAMGTQVLSLKDQ 334
>gi|87083842|gb|ABD19502.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ ++TTN + EL A + AL +V +
Sbjct: 595 YVDGAANRETKRGKAGYVTNRGRQKIHS---LEDTTNQKAELQAVLMALQDSGQ--EVNV 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + E + K+ L W+ H G
Sbjct: 650 VTDSQYVLGILQSHPDHSE-------------SDIVNQIIEELIKKEKIYLSWVPAHRGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|242775779|ref|XP_002478708.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218722327|gb|EED21745.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 294
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 89 VTIQWVPGHSGIEGNEQADQAAKRAASK 116
>gi|93210716|gb|ABF00689.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G + +G++K+I+ E ++ +
Sbjct: 587 LEKEPMAGVETFYVDGAANRET-KMGKAGYVTDRGRQKVITITETTNQKTELQAIQL--- 642
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 643 -ALQDSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 688
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 689 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 716
>gi|242789382|ref|XP_002481348.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717936|gb|EED17356.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 9/148 (6%)
Query: 8 EVHAYTDGACSGNPGPGG--WGV-----LLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++ ++DG+ + GG G+ LR + + A A
Sbjct: 22 DIVIFSDGSRLIDGRAGGGYIGIQAHYQFLRSSLSYRHGKEVFNIEVEAALADAQAAIAY 81
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
++ + + D+ V Q ++ T+ L + + + +
Sbjct: 82 PTAQFATNLWICLDNLEVIMHLLSPSTGSSQEVFE--SFHTLAAAWLLRERLPHTKSGSI 139
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GH EN+ D A+ A+S
Sbjct: 140 QIRWVPGHTKISENKVADLAAKEGAISI 167
>gi|86277529|gb|ABC88257.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKVVSLTETTNQKAELQAIQIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|197725636|gb|ACH73021.1| pol protein [Human immunodeficiency virus 2]
Length = 1032
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 18/138 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G + ++TTN + EL A ALT KV
Sbjct: 618 TIYTDGSCNKQSKEGKAGYVTDRGRDRV---KVLEQTTNQQAELEAFAMALTDSGP--KV 672
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV + + + N + E + + + W+ H
Sbjct: 673 NIIVDSQYVMGIVAGQPTESE-------------NRLVNQIIEEMIKKEAIYVAWVPAHK 719
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD +
Sbjct: 720 GIGGNQEVDHLVSQGIRQ 737
>gi|148745903|emb|CAK49340.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 960
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGN--PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S + G G+ +R I T +
Sbjct: 592 YVDGAASKDTKQGKAGY--------------------VTDRGRQKVVILNETTNQKTELH 631
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + ++ L W+ H
Sbjct: 632 AIYLALQDSGSEVNIVTDSQYALGIIQATPDRSESEIVNQIIEELIRKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSQGIRK 709
>gi|32344847|gb|AAM82302.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 592 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ- 650
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 651 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDR 693
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 694 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 721
>gi|158931142|sp|P27973|POL_SIVV1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1470
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGAC+ G G + + + + E T N+ + AIK P KV +
Sbjct: 1054 YVDGACNRQSKEGKAGYITQQGKQRV----QQLENTTNQQAELTAIKMALEDSGP-KVNI 1108
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + T + + + + + L W+ H G
Sbjct: 1109 VTDSQYAMGILT---------AQPTQSDSPLVEQIIAQMVQKEA----IYLQWVPAHKGI 1155
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 1156 GGNEEIDKLVSKGVRRI 1172
>gi|119176827|ref|XP_001240277.1| hypothetical protein CIMG_07440 [Coccidioides immitis RS]
Length = 188
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 39/146 (26%), Gaps = 4/146 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + Y+DG+ G GV S + + AI L
Sbjct: 34 RSLILYSDGSKGEESQYAGAGVY--NLQDNIRFSWNLGKYLEVFDAELFAIDKAFKLASS 91
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
S + + + + Q + L+WI
Sbjct: 92 ISQSQSRSISDIWVFSDSEAAIQRLMKQDLNSGLYYLQSIRKTAKSIKNQQINLHLHWIP 151
Query: 127 GHAGNQENEKVDRIARNAAVSFKNKI 152
H ENE+ D +A A N+I
Sbjct: 152 AHVNIHENEEAD-LAVKKATEL-NQI 175
>gi|145604719|ref|XP_001405561.1| hypothetical protein MGG_09423 [Magnaporthe oryzae 70-15]
gi|145012667|gb|EDJ97321.1| hypothetical protein MGG_09423 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|242824235|ref|XP_002488218.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218713139|gb|EED12564.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 267
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 23 DIVIFSDGSRLVDGRAGG-GYIGFQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIA 81
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++ + + + S ++ + + + W+ G
Sbjct: 82 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEATTHKSGS-----------IQIRWVPG 130
Query: 128 HAGNQENEKVDRIARNAAVSF 148
H ENE D A+ A S
Sbjct: 131 HTIIPENEAADLAAKEGAASI 151
>gi|158931144|sp|P05895|POL_SIVVT RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1467
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
GAC+ N G G + +Y + E T N+ + AIK P V + TD
Sbjct: 1060 GACNRNSKEGKAGYISQYGKQRVET----LENTTNQQAKLTAIKMALEDSGP-NVNIVTD 1114
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQEN 134
S Y + T + + + + ++ L W+ H G N
Sbjct: 1115 SQYAMGILT---------AQPTQSDSPLVEQIIALMIQKQ----QIYLQWVPAHKGIGGN 1161
Query: 135 EKVDRIARNAAV 146
E++D++
Sbjct: 1162 EEIDKLVSKGIR 1173
>gi|145615159|ref|XP_360034.2| hypothetical protein MGG_05409 [Magnaporthe oryzae 70-15]
gi|145022054|gb|EDK06074.1| hypothetical protein MGG_05409 [Magnaporthe oryzae 70-15]
Length = 291
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145604014|ref|XP_001405012.1| hypothetical protein MGG_14078 [Magnaporthe oryzae 70-15]
gi|145610434|ref|XP_364194.2| hypothetical protein MGG_12683 [Magnaporthe oryzae 70-15]
gi|145012116|gb|EDJ96772.1| hypothetical protein MGG_14078 [Magnaporthe oryzae 70-15]
gi|145017720|gb|EDK02083.1| hypothetical protein MGG_12683 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|91790653|ref|YP_551605.1| ribonuclease H [Polaromonas sp. JS666]
gi|91699878|gb|ABE46707.1| ribonuclease H [Polaromonas sp. JS666]
Length = 145
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 14/149 (9%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ Y DG+ NPG G G + + + + NN EL A + L L
Sbjct: 1 MNPWVVYCDGSAVPNPGRIGLGAVFTEPDGTRHTLSQAAHENGCNNEAELRALLATLREL 60
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
K L + S + + + +L
Sbjct: 61 KLRGAGTLLIHCDNSVVVEQVGGAAAKPIARLASLFDEARALLHS--------FDQANLV 112
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152
WI H N + D +AR A + ++
Sbjct: 113 WIPRHR----NSEADALARAALGIAEKRV 137
>gi|81428555|ref|YP_395555.1| putative ribonuclease H [Lactobacillus sakei subsp. sakei 23K]
gi|78610197|emb|CAI55246.1| Putative ribonuclease H [Lactobacillus sakei subsp. sakei 23K]
Length = 127
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 13/136 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTD A GNPGP G+L+ K+ S N+ E MA L +
Sbjct: 2 IKLYTDAATLGNPGPSAAGILIVTAKKQYQFSIPLPPVDNHIAEFMAVQLGLEKIATLA- 60
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + V W+
Sbjct: 61 --------LTESLLQINVDSKIVCQSLEKQYAKHYQQYVDQIIALEQPYSLVLHQWLP-- 110
Query: 129 AGNQENEKVDRIARNA 144
+++N+ +A+ A
Sbjct: 111 --DRQNKGAHHLAQQA 124
>gi|241896498|ref|ZP_04783794.1| possible ribonuclease H [Weissella paramesenteroides ATCC 33313]
gi|241870220|gb|EER73971.1| possible ribonuclease H [Weissella paramesenteroides ATCC 33313]
Length = 161
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 13/137 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+D A GNPG G G+++ Y G++ +N+ E AAI A
Sbjct: 34 IKVYSDAASQGNPGNSGAGLVILYNGQQIQQHHYLGNMSNHEAEFAAAIWAF-------- 85
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ S + L H + W+
Sbjct: 86 -QVLATLSNESDTIMYYADSKIVIDSIHKRYAKHFGPQLAQLLTYYDRYHLIIATWLP-- 142
Query: 129 AGNQENEKVDRIARNAA 145
++N ++A A
Sbjct: 143 --EKQNHGAHQLAWQAI 157
>gi|224151594|ref|XP_002200308.1| PREDICTED: similar to Pol polyprotein, partial [Taeniopygia
guttata]
Length = 1369
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 9/148 (6%)
Query: 10 HAYTDGACSGNPGP--GGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ DG+ G G+ ++ + SG + + + + A+
Sbjct: 797 VLFIDGSSRIVEGKRLSGYAIVKWEKGEFKIRESGPLSASWSAQACKLYALWKALVSLKG 856
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWI 125
+YTDS Y + K W++ G+ S K + + +L + + +K+ + I
Sbjct: 857 KDGTIYTDSRYAFGAVHTFGKIWEERGFINSQGKELVHQELIRRVLGALKMPNKIAVVHI 916
Query: 126 KGHA-----GNQENEKVDRIARNAAVSF 148
KGH + N D A+ A ++
Sbjct: 917 KGHQQGTSYQVRGNNAADTEAKRVAGNY 944
>gi|145604773|ref|XP_001405598.1| hypothetical protein MGG_13900 [Magnaporthe oryzae 70-15]
gi|145012704|gb|EDJ97358.1| hypothetical protein MGG_13900 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPENHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|242825540|ref|XP_002488462.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712280|gb|EED11706.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 892
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 593 DIVIFSDGSRLADGRAGG-GYIGLQAHHQFLRSSLSYGHGKEVFDAEAEAALAGAQAAIV 651
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ K + + +
Sbjct: 652 YPTAQFATNLWICLDNLEVAIRLLSPSTGSSQEIFESFRTLAAAWPLRKRLPHTKSGSIQ 711
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ GHA ENE D + A S
Sbjct: 712 IRWVPGHAKIPENEAADLATKEGAASI 738
>gi|400824|sp|P31795|POL_MLVRK RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
gi|332066|gb|AAA46525.1| pol [Murine leukemia virus]
Length = 581
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 27 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 83
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 84 NVYTDSRYAFATAHIHGEIYKRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 143
Query: 129 A-GN----QENEKVDRIARNAAVSF 148
G+ + N D+ AR AA+
Sbjct: 144 QKGDSAEARGNRLADQAAREAAIKA 168
>gi|38142451|gb|AAN18271.2| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KGK+KIIS E T N+ + A+ +V +
Sbjct: 595 YVDGAANRETKKGKAG-YITDKGKQKIIS---LENTTNQQAELGALYLALQDSEQ-QVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + E + KV L W+ H G
Sbjct: 650 VTDSQYVLGIIQSQPDHSE-------------SELVNQIIEELIKKDKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|292654009|ref|YP_003533907.1| ribonuclease H I [Haloferax volcanii DS2]
gi|291369994|gb|ADE02222.1| ribonuclease H I [Haloferax volcanii DS2]
Length = 216
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 8/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ GNPGP G G ++ E+ +R A L +
Sbjct: 82 VLYVDGSSRGNPGPAGAGAVIMD--SEEAQLARLGRPVGSRTGNNTAEYVALQLGLSELL 139
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y S + S + + G ++ + + H+ H
Sbjct: 140 SRYEPHSVDVRIDSMTVIRDVWGGNDPTEAGVETYSESIAAALSEVPNHRYT------HL 193
Query: 130 GNQENEKVDRIARNAAV 146
+ + D +A A
Sbjct: 194 ADSDPNPADALATVGAD 210
>gi|145606564|ref|XP_365556.2| hypothetical protein MGG_02258 [Magnaporthe oryzae 70-15]
gi|145014183|gb|EDJ98824.1| hypothetical protein MGG_02258 [Magnaporthe oryzae 70-15]
Length = 337
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 18/147 (12%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDS-SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
A + ++ + DS S + + Q + D +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHDFVDLFRKQGT--------- 114
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 -EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|130645|sp|P11227|POL_MLVRD RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
Length = 1196
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 642 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYKRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 758
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 759 QKGDSAEARGNRLADQAAREAAIK 782
>gi|257898618|ref|ZP_05678271.1| RNase H [Enterococcus faecium Com15]
gi|257836530|gb|EEV61604.1| RNase H [Enterococcus faecium Com15]
Length = 134
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 11/143 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GNPGP G G+L+ Y+GK++ +S TN++ E +K L LK
Sbjct: 2 LKVYIDASTKGNPGPSGGGILIVYQGKQEQLSIPLSVGTNHQAEFEVFLKTLEFLKN--- 58
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D K K + K + L + L W+
Sbjct: 59 ----KDLQNETIFCFSDSKTLVSTVDKNTTKNELFLPYLQKIKELLPDFSLLILQWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSFKNK 151
+N+ D +AR A +
Sbjct: 113 --ENKNKGADNLARQALQKQLKE 133
>gi|154285824|ref|XP_001543707.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407348|gb|EDN02889.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 226
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH V L W GH G + NE+ DR+A+ A S
Sbjct: 17 SNWAYNRCHELLRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 60
>gi|145615024|ref|XP_361886.2| hypothetical protein MGG_10963 [Magnaporthe oryzae 70-15]
gi|145021926|gb|EDK05975.1| hypothetical protein MGG_10963 [Magnaporthe oryzae 70-15]
Length = 359
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145605078|ref|XP_362824.2| hypothetical protein MGG_13700 [Magnaporthe oryzae 70-15]
gi|145012943|gb|EDJ97584.1| hypothetical protein MGG_13700 [Magnaporthe oryzae 70-15]
Length = 1141
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 16/150 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 879 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 938
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 939 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 989
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+V + W GH N++ D +A+
Sbjct: 990 RKQGTEVRVRWCPGHQEIPGNDRADELAKA 1019
>gi|321456611|gb|EFX67714.1| hypothetical protein DAPPUDRAFT_330770 [Daphnia pulex]
Length = 316
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S + + + KE + G T A
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++Y+DSS S + T + + + W
Sbjct: 82 CPPEAIIYSDSSSAITAISSNSLSENEAITATREIISSLKSSGTRTRL----------TW 131
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 132 IPSHTGIEGNERADRLA 148
>gi|154270463|ref|XP_001536086.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409890|gb|EDN05278.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 378
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
V+ YWI H G + NE D++A+ A
Sbjct: 131 DVEFYWIPAHHGIEGNELADKLAKEA 156
>gi|121701987|ref|XP_001269258.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
gi|119397401|gb|EAW07832.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
Length = 208
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 16/154 (10%)
Query: 7 REVHAYTDGACSGNPGPGG-------WGV--------LLRYKGKEKIISGGEKETTNNRM 51
+ + DGAC N WG +L ++ +
Sbjct: 53 KSIVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEALG 112
Query: 52 ELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
L A A V++ +DS Y+ +G ++W W+ W+ V N++ +
Sbjct: 113 NLDDVSCAHPAGDRLSTVVIKSDSEYMVRGITEWFPSWRNQRWRNYRGMPVTNLEYFRMI 172
Query: 112 VEASAQHKVDLYWIK-GHAGNQENEKVDRIARNA 144
E + +K N D +A++A
Sbjct: 173 DEYIEDWEAQGLSVKFWLVPRSMNRMADGLAKDA 206
>gi|145604144|ref|XP_360437.2| hypothetical protein MGG_10749 [Magnaporthe oryzae 70-15]
gi|145012205|gb|EDJ96861.1| hypothetical protein MGG_10749 [Magnaporthe oryzae 70-15]
Length = 320
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 5 HLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAI 57
++ YTDG+ N GW L + I+ + + +
Sbjct: 32 TPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGL 91
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+A + ++ + DS+ V G + Q + + +
Sbjct: 92 QAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQG 142
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 143 TEVRVRWCPGHQGIPGNDRADELAKAG 169
>gi|90971313|ref|YP_536867.1| pol protein [Ovine lentivirus]
gi|130649|sp|P16901|POL_OMVVS RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|423982|pir||B46335 HIV-1 retropepsin (EC 3.4.23.16) - Maedi/Visna virus (strain
SA-OMVV)
gi|90970031|gb|ABE02804.1| pol protein [Ovine lentivirus]
Length = 1086
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K + G + R A + + +
Sbjct: 558 YTDGGKKN--GKGSLGFIASTGVKFRKHEEGTNQQLELRAIEEACKQGPEKMN------I 609
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + ++ ++W+ GH G
Sbjct: 610 VTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKE-----------QIGVHWVPGHKGI 658
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +AR
Sbjct: 659 PQNEEIDKYISEIFLAREG 677
>gi|328495158|gb|AEB21185.1| pol polyprotein [Visna/maedi virus]
Length = 1103
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A T + +
Sbjct: 573 YTDGGKKN--GLGSLGYIASTGDKYRIHEKGTNQQLELRAIEEACKHGPTRMN------I 624
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + KV ++W+ GH G
Sbjct: 625 VTDSRYAYEFMIRNWDEEVTKNPIQARIMKLIHNKE-----------KVGIHWVPGHKGI 673
Query: 132 QENEKVDR------IARNAAVSFKNK 151
+NE++DR +A+ + +
Sbjct: 674 PQNEEIDRYISEIFLAKEGEGILRKR 699
>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 427
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAA-----IKA 59
Y+D + G+ G ++ + + ++S G + + EL+ +
Sbjct: 102 VVYSDAS--GHDNHLGAAAVVLDRNQNIVVSRKTAIGPMAHWSIHIAELIGVYYAISLAL 159
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + S+ + +N TS ++ ++ I+ +++
Sbjct: 160 KIFHQNGQSTRPGAGEAITILSDSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGI-P 218
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L WI GH N N+ DR+A+ A K
Sbjct: 219 LHLQWIPGHCDNLGNDAADRLAKAAVGPTK 248
>gi|321451947|gb|EFX63450.1| hypothetical protein DAPPUDRAFT_335441 [Daphnia pulex]
Length = 316
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S + + + KE + G T A
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++Y+DSS S + T + + W
Sbjct: 82 CPPEAIIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRL----------TW 131
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 132 IPSHTGIEGNERADRLA 148
>gi|258450517|gb|ACV72188.1| ribonuclease H [uncultured organism]
Length = 156
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 45/140 (32%), Gaps = 18/140 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTA--L 63
EV Y DG GNPG G +++ + GGE TTNN+ E A AL
Sbjct: 24 EVIIYADGGSRGNPGQSASGFVIKDADDRVLFKGGEYVGITTNNQAEYQAVKLALEKALE 83
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
KV L DS V + K ++ + V
Sbjct: 84 LGAKKVKLRLDSLLVVNQLNGSYKIR--------NRDLWSIHMFIKDLIGRFESFSV--- 132
Query: 124 WIKGHAGNQENEKVDRIARN 143
H + N++ D +
Sbjct: 133 ---SHVRREFNKEADAMVNK 149
>gi|147678936|ref|YP_001213151.1| ribonuclease HI [Pelotomaculum thermopropionicum SI]
gi|146275033|dbj|BAF60782.1| ribonuclease HI [Pelotomaculum thermopropionicum SI]
Length = 147
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 8/147 (5%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKALTAL 63
++ V DG GNPGP +++ + S + N +A++
Sbjct: 1 MK-VFVNIDGGSRGNPGPAAAAMVVTDEEGRVLATKSKFLGPSLTNNFAEWSALEGAVNA 59
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
Y + S+ + + +K + K + + + + K+ L
Sbjct: 60 LVHLA-GQYGSLEAEVRADSELVVRQFNRQYKIKEPSLRKIAERVWENLAITPGLKLTLK 118
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKN 150
+ +EN+ D S++
Sbjct: 119 HVP----REENKLADDAVNRELDSYQE 141
>gi|808757|gb|AAA66812.1| pol polyprotein [Ovine lentivirus]
Length = 991
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K + G + R A + + +
Sbjct: 463 YTDGGKKN--GKGSLGFIASTGVKFRKHEEGTNQQLELRAIEEACKQGPEKMN------I 514
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + ++ ++W+ GH G
Sbjct: 515 VTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKE-----------QIGVHWVPGHKGI 563
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +AR
Sbjct: 564 PQNEEIDKYISEIFLAREG 582
>gi|30908471|gb|AAP37287.1| gag-pol polyprotein [Murine leukemia virus]
Length = 1734
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I +G T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWAGALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|145601861|ref|XP_360463.2| hypothetical protein MGG_14250 [Magnaporthe oryzae 70-15]
gi|145615450|ref|XP_360220.2| hypothetical protein MGG_04814 [Magnaporthe oryzae 70-15]
gi|145010337|gb|EDJ94993.1| hypothetical protein MGG_14250 [Magnaporthe oryzae 70-15]
gi|145022271|gb|EDK06291.1| hypothetical protein MGG_04814 [Magnaporthe oryzae 70-15]
Length = 291
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|117581773|gb|ABK41307.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGACS G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGACSRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIHAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|119195267|ref|XP_001248237.1| hypothetical protein CIMG_02008 [Coccidioides immitis RS]
Length = 474
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
+ L+W+ H G + NE DR+A+ A
Sbjct: 261 ISLHWVPAHQGIKGNELADRLAKEA 285
>gi|2343269|gb|AAC59310.1| pol polyprotein [Walleye epidermal hyperplasia virus 1]
Length = 1200
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYP 66
E+ +TDG+ S G GG V+ K+ ++ T+ + +AAI
Sbjct: 628 ELILFTDGSYSK--GEGGCAVVQYAPEKDTFLTVAACTGFTSAQTAELAAITLACQYAED 685
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWI 125
V +YTDS Y + WQ G+ TS +KN ++ K +EA K+ L
Sbjct: 686 KSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHEMIQKLLEAVQLPSKISLMKC 745
Query: 126 KGHA 129
H
Sbjct: 746 PAHT 749
>gi|4808993|gb|AAD30048.1|AF133051_3 pol polyprotein [Walleye epidermal hyperplasia virus 1]
Length = 1200
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-GGEKETTNNRMELMAAIKALTALKYP 66
E+ +TDG+ S G GG V+ K+ ++ T+ + +AAI
Sbjct: 628 ELILFTDGSYSK--GEGGCAVVQYAPEKDTFLTVAACTGFTSAQTAELAAITLACQYAED 685
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWI 125
V +YTDS Y + WQ G+ TS +KN ++ K +EA K+ L
Sbjct: 686 KSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHEMIQKLLEAVQLPSKISLMKC 745
Query: 126 KGHA 129
H
Sbjct: 746 PAHT 749
>gi|149210979|ref|XP_001522864.1| hypothetical protein (T30528 reverse transcriptase - rice blast
fungus gi|2454622|gb|AAB71689.1| (AF018033) reverse
transcriptase [Magnaporthe oryzae]) [Magnaporthe grisea
70-15]
Length = 366
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 28 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPENHVFDAEAIGA 87
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 88 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 138
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 139 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 169
>gi|82571212|gb|ABB83989.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 591 LEKEPMAGVETFYVDGAANRETRIGQAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ- 649
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 650 ----DSGPEVNIVTDSQYS-------------LGIIQAQPDKSESELVNQIIEELIKKER 692
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 693 VYLSWVPAHKGIGGNEQVDKLVSRGIRK 720
>gi|242789181|ref|XP_002481309.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717897|gb|EED17317.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 7/146 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++D + G G G + + + S + A A
Sbjct: 22 DIVIFSDRS-RLIDGRAGGGYIGFQAHHQFLRSSLLYGHGKEVFDTEAEAALAGAQAAIT 80
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + +
Sbjct: 81 YPTAQFATNLWICLDNLEVATRLLSPSTGSSQEVFESFRTLAAAWPLRERLPHTKSGSIQ 140
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
+ W+ GHA ENE D A+ A S
Sbjct: 141 IRWVPGHAKIPENEAADLAAKEGAAS 166
>gi|145611989|ref|XP_001411703.1| hypothetical protein MGG_12257 [Magnaporthe oryzae 70-15]
gi|145019236|gb|EDK03464.1| hypothetical protein MGG_12257 [Magnaporthe oryzae 70-15]
Length = 291
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145605218|ref|XP_365479.2| hypothetical protein MGG_13733 [Magnaporthe oryzae 70-15]
gi|145013061|gb|EDJ97702.1| hypothetical protein MGG_13733 [Magnaporthe oryzae 70-15]
Length = 371
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 34/144 (23%), Gaps = 38/144 (26%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+D ++ YTDG+ + E R L
Sbjct: 72 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGL------- 108
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ S + + K ++ +V
Sbjct: 109 ---------------EFAAGSASITPESHVFDAEAIGALKGLQAAAKAQPGARIWICTEV 153
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W GH G N++ D +A+
Sbjct: 154 RVRWCPGHQGIPGNDRADELAKAG 177
>gi|42528304|gb|AAS18421.1| pol protein [Small ruminant lentivirus]
Length = 1109
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K + G + R A + P K+ +
Sbjct: 579 YTDGGKKN--GIGSLGYVASTGAKYRQHESGTNQQLELRAIEEA------CKQGPAKMNI 630
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + K+ ++W+ GH G
Sbjct: 631 VTDSRYAYEFMLRNWDEEVIKNPIQARIMKIVHDKD-----------KIGVHWVPGHKGI 679
Query: 132 QENEKVDR------IARNA 144
+NE+VD+ +A+
Sbjct: 680 PQNEEVDKYISEIFLAKEG 698
>gi|302679730|ref|XP_003029547.1| hypothetical protein SCHCODRAFT_236316 [Schizophyllum commune H4-8]
gi|300103237|gb|EFI94644.1| hypothetical protein SCHCODRAFT_236316 [Schizophyllum commune H4-8]
Length = 437
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAA 145
V+ W+KGH+GN+ N+ D +A++ A
Sbjct: 341 CPVEFRWVKGHSGNKGNDAADILAKDGA 368
>gi|93210794|gb|ABF00759.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + K
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEK 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++
Sbjct: 682 VYLSWVPAHKGTGGNEQVDKLVSRGIRK 709
>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 362
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 19/137 (13%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TD A + G G GV + I K T+ AI+ +
Sbjct: 176 IFTD-ASKSSDGRCGIGVF--DEQSGTRIMMQLKLGTSISTAETLAIQVAMQHIDKRGIQ 232
Query: 71 L---YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
TDS V + + + + +E + +++ + WI G
Sbjct: 233 NAVLLTDSQPVCL-------------FLKKSRNSRMRNSVANDILEKAKRNRTTIQWIPG 279
Query: 128 HAGNQENEKVDRIARNA 144
H NE D +AR A
Sbjct: 280 HVQVDGNETADGLARQA 296
>gi|154285828|ref|XP_001543709.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407350|gb|EDN02891.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 288
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
S QH V L W GH G + NE+ DR+A+ A S
Sbjct: 82 CSLQHNVGLKWAPGHMGIEGNEEADRLAKRAVSS 115
>gi|145613082|ref|XP_369207.2| hypothetical protein MGG_12498 [Magnaporthe oryzae 70-15]
gi|145020129|gb|EDK04357.1| hypothetical protein MGG_12498 [Magnaporthe oryzae 70-15]
Length = 350
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 58 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 117
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 118 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLL 168
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 169 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 199
>gi|6686397|gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 37/138 (26%), Gaps = 15/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKYP 66
V TDGA GNPG G +LR S + + EL L
Sbjct: 569 VKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 628
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ S+ I + + G S + + V
Sbjct: 629 KV------PRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIV------ 676
Query: 127 GHAGNQENEKVDRIARNA 144
H + N D +A A
Sbjct: 677 -HVYREANRLADGLANYA 693
>gi|294945288|ref|XP_002784605.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897790|gb|EER16401.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 741
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 7/138 (5%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ + G G+++ KG E + + + V+
Sbjct: 459 IFTDGSVVKD-RKTGAGMVVYRKGVEVHSNYWKLSPYATITDCELLGVLEAVRW----VI 513
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L T+ F+ + ++ + + A KV +W+ GH+G
Sbjct: 514 LTTEGEEEWAVFTDSQAVLKILSS--RSTVARRDKARQITLLLAEIPDKVTFHWLPGHSG 571
Query: 131 NQENEKVDRIARNAAVSF 148
N++ D +A A
Sbjct: 572 MFANDRADELAAKGASMM 589
>gi|150402009|ref|YP_001329303.1| ribonuclease H [Methanococcus maripaludis C7]
gi|150033039|gb|ABR65152.1| ribonuclease H [Methanococcus maripaludis C7]
Length = 201
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 7 REV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTAL 63
++V +A+ DG+ + G GVL + G EK I G KE + R + + A+
Sbjct: 65 KDVMYAWVDGSFNLKNKEYGAGVLTIFNGIEKEIKAKGNNKELSKMRNVAGEILASELAM 124
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+Y + Y + + + K + ++
Sbjct: 125 EYAVSKNVKNLIIYHDYLGIEKWCTGEW------KTNKEGTTEYKEKCKNYLKKLNIEFV 178
Query: 124 WIKGHAGNQENEKVDRIARN 143
+K H+G++ NE D++A+
Sbjct: 179 KVKAHSGDKNNEIADKLAKE 198
>gi|145601368|ref|XP_001402760.1| hypothetical protein MGG_14196 [Magnaporthe oryzae 70-15]
gi|145009458|gb|EDJ94125.1| hypothetical protein MGG_14196 [Magnaporthe oryzae 70-15]
Length = 863
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 36/144 (25%), Gaps = 32/144 (22%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+D ++ YTDG+ + E R L A +
Sbjct: 677 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGLEFAAGSA 720
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + V++++ +V
Sbjct: 721 FITPESHVFDA----------------EAIGALKGLQAAAKAQPGARIWICVDSTSGTEV 764
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W GH G N++ D +A+
Sbjct: 765 RVRWCPGHQGIPGNDRADELAKAG 788
>gi|4586458|dbj|BAA76384.1| reverse transcriptase [Magnaporthe grisea]
Length = 288
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 16/144 (11%)
Query: 8 EVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++ YTDG+ N GW L + I+ + + ++A
Sbjct: 1 DIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAAAASITPESHVFDAEAIGALKGLQAA 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ ++ + DS+ V G + Q + + + +V
Sbjct: 61 AKAQPGARIWICVDSTSVIWGLKGDAPRSSQWAFLEFHD---------LVDLLRKQGTEV 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W GH G N++ D +A+
Sbjct: 112 RVRWCPGHQGIPGNDRADELAKAG 135
>gi|289807167|ref|ZP_06537796.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 33
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAA 145
QH++ W+KGHAG+ ENE+ D +AR AA
Sbjct: 5 QHQIKWVWVKGHAGHPENERCDELARAAA 33
>gi|171879718|gb|ACB55592.1| polymerase [synthetic construct]
Length = 1088
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K ++ G + R A + P K+ +
Sbjct: 558 YTDGGKKN--GEGSLGYIASTGEKCRMHEKGTNQQLELRAIEEA------CKQGPSKMNI 609
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV ++W+ GH G
Sbjct: 610 VTDSRYAFEFMIRNWDEEVIKNPIQARIMKLIHSKE-----------KVGIHWVPGHKGI 658
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +A+
Sbjct: 659 PQNEEIDKYISEVFLAKEG 677
>gi|808677|gb|AAA66556.1| pol protein [Human spumaretrovirus]
Length = 545
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 17/146 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 400 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 459
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 460 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDI 519
Query: 121 DLYWIKGHAGN------QENEKVDRI 140
+ KG + + N D++
Sbjct: 520 TIQHEKGISLQIPVFILKGNALADKL 545
>gi|2801486|gb|AAC82578.1| Pr125 [Human spumaretrovirus]
Length = 556
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 17/146 (11%)
Query: 12 YTDGACSGNPGP-----GGWGVLLRYKGKE----KIISGGEKETTNNRMELMAA-IKALT 61
YTDG+ +P P G G++ E S T E+ A
Sbjct: 400 YTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK 459
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KV 120
ALK P VL+ TDS YV + ++ + W+ NG+ + KK +K+I W E + +
Sbjct: 460 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDI 519
Query: 121 DLYWIKGHAGN------QENEKVDRI 140
+ KG + + N D++
Sbjct: 520 TIQHEKGISLQIPVFILKGNALADKL 545
>gi|168049717|ref|XP_001777308.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671284|gb|EDQ57838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 12/131 (9%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
DGA GNPGP G G L+R E + L + +
Sbjct: 90 DGASKGNPGPAGAGALVRGPDGSVFCELREGLGSVTNNVAEYRAFILGLKGALDRGIYRV 149
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQE 133
K Q + + ++ + ++
Sbjct: 150 RVQGDSKLVCQQVLGKW------KVNDEGLLPLWKEAQMLMLNFREISVKHVR------F 197
Query: 134 NEKVDRIARNA 144
N D++A A
Sbjct: 198 NPSADQLANEA 208
>gi|37221464|gb|AAQ89861.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRTGKAGYVTDRGKQKVVPLTDTTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ R
Sbjct: 642 GGNEQVDKLVRAGIRK 657
>gi|255070537|ref|XP_002507350.1| predicted protein [Micromonas sp. RCC299]
gi|226522625|gb|ACO68608.1| predicted protein [Micromonas sp. RCC299]
Length = 265
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNR--MELMAAIKALTALKYPCK 68
+ DG+ P G GV + T ++ EL A AL
Sbjct: 54 VFVDGS-VTQGKPAGVGVWYGVGHPLNFAAALPSPTFDDNNLAELAAVFVALIRHPRNAP 112
Query: 69 VLLYTDSSYVHKGFSQWI-------------KKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
+ ++TDS+YV + + + +G + + + +
Sbjct: 113 MKIHTDSAYVIQTLNPDRSPTMNRCRRSSSPARRSGDGSAAGSAAARRALTRAARLLLRW 172
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
++GH G+ NE+ DR+A + S
Sbjct: 173 RAAATSFRKVRGHVGDVGNERADRLAALGSRSA 205
>gi|223949765|gb|ACN28966.1| unknown [Zea mays]
Length = 331
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 14/141 (9%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R ++ G TNN E A I L +
Sbjct: 198 DGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 257
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+G S+ + Q W+ D+ + E +++ H
Sbjct: 258 R------CQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQIN------HVLR 305
Query: 132 QENEKVDRIARNAAVSFKNKI 152
+ N D A +++
Sbjct: 306 EFNSDADVQANFGCQLAVDEV 326
>gi|226532456|ref|NP_001145250.1| hypothetical protein LOC100278534 [Zea mays]
gi|195653679|gb|ACG46307.1| hypothetical protein [Zea mays]
Length = 276
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 14/141 (9%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R ++ G TNN E A I L +
Sbjct: 143 DGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 202
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+G S+ + Q W+ D+ + E +++ H
Sbjct: 203 R------CQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQIN------HVLR 250
Query: 132 QENEKVDRIARNAAVSFKNKI 152
+ N D A +++
Sbjct: 251 EFNSDADVQANFGCQLAVDEV 271
>gi|145606739|ref|XP_364496.2| hypothetical protein MGG_09430 [Magnaporthe oryzae 70-15]
gi|145014401|gb|EDJ98969.1| hypothetical protein MGG_09430 [Magnaporthe oryzae 70-15]
Length = 391
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM--KFVEASAQHKVDLYWIKGHA 129
+ S+Y ++ + + + D + + V + W GH
Sbjct: 191 WPTSAYFQWDYTPPASPKKSDSHSSKDPENRHVTRAISGGSTKSKTWYRMVRVRWCPGHQ 250
Query: 130 GNQENEKVDRIARNA 144
G N++ D +A+
Sbjct: 251 GIPGNDRADELAKAG 265
>gi|227535052|ref|ZP_03965101.1| ribonuclease H [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187267|gb|EEI67334.1| ribonuclease H [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 147
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALK 64
+ YTDGA GNPGP G G+L+ + +N+ E AAI A
Sbjct: 17 LKLYTDGATKGNPGPAGIGILVSGLPHQIQKHAALPAMSNHEAEFAAAIAGFELLSQAGL 76
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + L + V W
Sbjct: 77 NTTPVAFYSDSKLVIQAIEKQY----------AKHYPDLAGRLLTLIGQFPL---VLPNW 123
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ ++ N +A+ + KI
Sbjct: 124 LP----DRANRGAHMLAQQGLRQSETKI 147
>gi|191638458|ref|YP_001987624.1| Cell wall enzyme ebsB [Lactobacillus casei BL23]
gi|301066511|ref|YP_003788534.1| ribonuclease HI [Lactobacillus casei str. Zhang]
gi|190712760|emb|CAQ66766.1| Cell wall enzyme ebsB [Lactobacillus casei BL23]
gi|300438918|gb|ADK18684.1| Ribonuclease HI [Lactobacillus casei str. Zhang]
gi|327382490|gb|AEA53966.1| Ribonuclease H [Lactobacillus casei LC2W]
gi|327385688|gb|AEA57162.1| Ribonuclease H [Lactobacillus casei BD-II]
Length = 132
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALK 64
+ YTDGA GNPGP G G+L+ + +N+ E AAI A
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPHQIQKHAALPAMSNHEAEFAAAIAGFELLIQAGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + L + V W
Sbjct: 62 NTTPVAFYSDSKLVIQAIEKQY----------AKHYPDLAGRLLTLIGQFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ ++ N +A+ + KI
Sbjct: 109 LP----DRANRGAHMLAQQGLRQSETKI 132
>gi|117581792|gb|ABK41324.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGACS G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGACSRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIHAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|116494948|ref|YP_806682.1| ribonuclease HI [Lactobacillus casei ATCC 334]
gi|116105098|gb|ABJ70240.1| Ribonuclease HI [Lactobacillus casei ATCC 334]
Length = 132
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALK 64
+ YTDGA GNPGP G G+L+ + +N+ E AAI A
Sbjct: 2 LKLYTDGATKGNPGPAGIGILVSGLPHQIQKHAALPAMSNHEAEFAAAIAGFELLSQAGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + L + V W
Sbjct: 62 NTTPVAFYSDSKLVIQAIEKQY----------AKHYPDLAGRLLTLIGQFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ ++ N +A+ + KI
Sbjct: 109 LP----DRANRGAHMLAQQGLRQSETKI 132
>gi|328834572|gb|AEB52967.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ + T N+ + AI +V +
Sbjct: 596 YVDGAANRNTKIGKAGYVTDKGRQKVVT----LTETTNQKTELEAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|242811714|ref|XP_002485806.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
gi|218714145|gb|EED13568.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
Length = 275
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 73 VTIQWVPGHSGVEGNEQADQAAKRAASKH 101
>gi|145605916|ref|XP_001406548.1| hypothetical protein MGG_01938 [Magnaporthe oryzae 70-15]
gi|145013667|gb|EDJ98308.1| hypothetical protein MGG_01938 [Magnaporthe oryzae 70-15]
Length = 557
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 32/149 (21%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA---- 56
+D ++ YTDG+ + E R L A
Sbjct: 241 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGLEFAAGSA 284
Query: 57 -IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
I + + + K Q + TS + +
Sbjct: 285 SITPESHVFDAEAIGALKGLQAAAKA--QPGARIWICVDSTS---------VIWGLRGDA 333
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ +V + W GH G N++ D +A+
Sbjct: 334 PRTEVRVRWCPGHQGIPGNDRADELAKAG 362
>gi|50545157|ref|XP_500116.1| YALI0A16148p [Yarrowia lipolytica]
gi|49645981|emb|CAG84047.1| YALI0A16148p [Yarrowia lipolytica]
Length = 136
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 45 ETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN 104
R + A++ L+ + TDS YV S+W+ WQ+NGW + V N
Sbjct: 29 NQRAERAAVQRALEILSTQTDNRMYQICTDSEYVINCLSKWVTTWQKNGWINARGLPVCN 88
Query: 105 IDLWMK--FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
DL + AS + + L ++ H+ + N + DR+A
Sbjct: 89 RDLIQDITNLNASCTNVIGLKKVRAHSDDNANNQADRLAGEG 130
>gi|38892783|gb|AAR27773.1| pol protein [Human immunodeficiency virus 1]
gi|212382600|gb|ACJ25618.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + I + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQRVITLTETTNQKTELQAIQIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|158380327|gb|ABW37368.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRDTKIGKAGYVTDRGRQKIVSLNETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSQGIRK 709
>gi|256010972|gb|ACU55342.1| pol protein [Human immunodeficiency virus 1]
Length = 881
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A + AL +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVPLTETTNQKAELQAILLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|212539053|ref|XP_002149682.1| zinc knuckle domain protein [Penicillium marneffei ATCC 18224]
gi|210069424|gb|EEA23515.1| zinc knuckle domain protein [Penicillium marneffei ATCC 18224]
Length = 1849
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 26/143 (18%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ YTDG+ G G G G+++ K G +T EL + AL A++
Sbjct: 1530 NDIQVYTDGS--GYNGQIGAGMVIPEMGITRKAYLGTTGSSTVYAAELKGIVMALEAIQQ 1587
Query: 66 PCK--------------VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
C+ + +YTD+ + ++ Q T+ L +
Sbjct: 1588 YCQQRIPRTRNKWLGRGIRIYTDNQATLRALTRPRMVSGQVHLWTA---------LRILN 1638
Query: 112 VEASAQHKVDLYWIKGHAGNQEN 134
+ + +WI GH G + N
Sbjct: 1639 WCENNNVMISFHWIPGHEGIEGN 1661
>gi|82571251|gb|ABB84024.1| pol protein [Human immunodeficiency virus 1]
gi|212382643|gb|ACJ25639.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.5 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGPEVNIITDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|187371926|gb|ACD02823.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 602 YVDGASNRETKKGKAGYVTDKGRQKTVTLTETTNQKAELQAIQLALQ-----DSGSKVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIEKEKVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRKI 720
>gi|6093153|emb|CAB58985.1| POL protein [Human immunodeficiency virus 1]
Length = 1005
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +R A I T + +
Sbjct: 598 YVDGASNRETKKGKAGYV------------------TDRGRQKAVILTETTNQKAELQAI 639
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ + G + ++ + + + +V L W+ H G
Sbjct: 640 HLALQDSGSEVNIVTDSQYVLGIIQAQPDKSESEIVNKIIEKLIQKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE+VDR+
Sbjct: 700 GGNEQVDRLVSAGIRKI 716
>gi|308542720|gb|ADO34204.1| pol protein [synthetic construct]
Length = 1039
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + I + TTN + EL A + AL + KV +
Sbjct: 628 YVDGAANRNSKEGKAGYITDRGDHKVIT---LENTTNQKAELEAVLLALRSSGP--KVNI 682
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + NI + E + V + W+ H G
Sbjct: 683 VTDSQYAMGIVAGEPTES-------------DNILVQQIIEELIRKEAVYISWVPAHKGV 729
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 730 GGNEEIDKLVSQGIRQ 745
>gi|306478007|gb|ADM89378.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + GG G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGGAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|307150716|ref|YP_003886100.1| ribonuclease H [Cyanothece sp. PCC 7822]
gi|306980944|gb|ADN12825.1| ribonuclease H [Cyanothece sp. PCC 7822]
Length = 320
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 21/145 (14%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY--P 66
Y DG GNPG G VL+ G++ +S TNN E I L K
Sbjct: 15 ILYFDGGSRGNPGEAAGAAVLVMPDGQKYTVSEYISVATNNEAEYTGLIVGLQKAKELGI 74
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS V ++ + KV L W+
Sbjct: 75 EALTVKGDSQLVINQVNRKW----------KVNSARMQKFYQEVQGLIKSFEKVTLDWVP 124
Query: 127 GHAGNQENEKVDRIARNAAVSFKNK 151
H + +A A ++
Sbjct: 125 RHENH--------LADAAVNQCIDQ 141
>gi|156545886|ref|XP_001606639.1| PREDICTED: similar to lachesin, putative [Nasonia vitripennis]
Length = 742
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 17/148 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNN---RMELMAAIKALTAL 63
V YT G+ + N G G + +E + S T R AA L
Sbjct: 77 NSVVWYTAGSKNENG--VGAGAWKKGDTQEIVCSLDRYATVCQAEIRAITEAAKWLLERG 134
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V +DS ++ +++ + V L
Sbjct: 135 TGQRTVSFCSDSRAALMALDIINISSKEVLRFRQALESLAEHNA------------VRLV 182
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+ GH+G +EK DR+A A + +
Sbjct: 183 WVPGHSGVVGDEKTDRLAGRGADGIRAR 210
>gi|73913932|gb|AAZ91899.1| pol protein [Human immunodeficiency virus 1]
Length = 937
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKVGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + DS Y + ++ + E + +
Sbjct: 639 ----DSGSEVNIVADSQYALGIL-------------QAQPDKSESELVSQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|149209429|ref|XP_001522089.1| hypothetical protein MG09039.4 [Magnaporthe oryzae 70-15]
Length = 305
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|118396396|ref|XP_001030538.1| RNase H family protein [Tetrahymena thermophila]
gi|89284845|gb|EAR82875.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 693
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKE----KIISGGEKETTNNRMELMAAIKALTA--LK 64
DG GNPG G G L++ + + TNN+ E +A I L
Sbjct: 561 IEFDGCSKGNPGLAGVGFLIKQHENNSQVLESFAVNVGTKTNNQSEYLALIYGLYVSLKI 620
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K+ + DS + + + + + +
Sbjct: 621 GIQKLFIQGDSQLIIYQMTGKYN---CSNDNIKKYYELCKMLQSKFQQTSFN-------- 669
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKN 150
H ++N++ D ++ A
Sbjct: 670 ---HVYREQNKEADHLSNVAISKQNK 692
>gi|145606442|ref|XP_001406980.1| hypothetical protein MGG_11954 [Magnaporthe oryzae 70-15]
gi|145014099|gb|EDJ98740.1| hypothetical protein MGG_11954 [Magnaporthe oryzae 70-15]
Length = 337
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|14579604|gb|AAK69322.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + + K + ETTN + EL A L +V +
Sbjct: 602 YVDGAASRETKKGKAGYV---TDRGKQKAVPLTETTNQKAELHAI--QLALQDSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRKI 720
>gi|296166119|ref|ZP_06848564.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898528|gb|EFG78089.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 364
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 16/138 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTA 62
++ V DG GNPGP G+G ++ + + TNN E + L
Sbjct: 1 MK-VVIEADGGSRGNPGPAGYGAVVWAEDRSTALAETKQAIGHATNNVAEYRGLLAGLDD 59
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L ++ + Q +G + + + + A ++
Sbjct: 60 -------ALRVGATEAAVFLDSKLLVEQMSGRWKVKHPDLVELHGQARKLAARFD-RISY 111
Query: 123 YWIKGHAGNQENEKVDRI 140
WI N DR+
Sbjct: 112 TWIP----RDRNSYADRL 125
>gi|17046773|gb|AAL34788.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMMGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIRLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + K
Sbjct: 639 ----DSGPEVNIVTDSQYA-------------LGITQAQPDKSESELVNQIIEQLIKKEK 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIRK 709
>gi|27311168|ref|NP_758887.1| pol protein [Simian immunodeficiency virus SIV-mnd 2]
gi|26557008|gb|AAM08706.2|AF367411_2 pol protein [Simian immunodeficiency virus SIV-mnd 2]
Length = 1010
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + I E T N+ + AIK P KV +
Sbjct: 608 YVDGAANRNSKEGKAGYVTARNKSRVI----ALENTTNQKAELEAIKMALQDSGP-KVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKGHAG 130
TDS Y S + + + +E + V L W+ H G
Sbjct: 663 VTDSQYAMGIL--------------SAAPDQSDNPIVREIIELMIHKEAVYLAWVPAHKG 708
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 709 IGGNEQVDKLVSRGVRQ 725
>gi|86277539|gb|ABC88266.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGASNRETKKGKAGYVTDKGRQKAVSLIETTNQKAELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKDKVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 705 GGNEQVDKLVSAGIRKI 721
>gi|11385961|gb|AAG35044.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + + + + ETTN + EL A L +V +
Sbjct: 395 YVDGASSRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRKI 513
>gi|331268933|ref|YP_004395425.1| hypothetical protein CbC4_0748 [Clostridium botulinum BKT015925]
gi|329125483|gb|AEB75428.1| hypothetical protein CbC4_0748 [Clostridium botulinum BKT015925]
Length = 309
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 13/141 (9%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNR------MELMAAIKALTALKY 65
Y DG+ + G +G+++ G K I G E + EL AI++L
Sbjct: 78 YVDGSYNSGSGKYSYGLVMVEDGVVKYIENGSAENKTGKDVRQIAGELKGAIRSLQYAAE 137
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ YV + ++ +I KV +
Sbjct: 138 NNIKNIVLIHDYVGVCYHATGVWQRREQSSEKYYNDFNSIIKENDI-------KVIFVKV 190
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H G+ NE VD A+ AA
Sbjct: 191 DSHTGDLYNEMVDEFAKAAAD 211
>gi|301110835|ref|XP_002904497.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095814|gb|EEY53866.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 241
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 34/140 (24%), Gaps = 34/140 (24%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
G GNPGPGG V +R A + A + Y +
Sbjct: 66 GGSRGNPGPGGSAVAIR-----------------------TADATVHAQVCWIGTMSYAN 102
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-------VDLYWIKG 127
+ + + + I K V +
Sbjct: 103 PRFTNNIREHLGLFCGLKACDKHTFEPLHVIGAKHFQNYYWQSRKLADRLDVVAWH---- 158
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + N+ D +A A +
Sbjct: 159 HHLREFNKMADTLANMAMDN 178
>gi|145612793|ref|XP_360496.2| hypothetical protein MGG_12432 [Magnaporthe oryzae 70-15]
gi|149211309|ref|XP_001523029.1| hypothetical protein MG10332.4 [Magnaporthe oryzae 70-15]
gi|145019911|gb|EDK04139.1| hypothetical protein MGG_12432 [Magnaporthe oryzae 70-15]
Length = 337
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|326483666|gb|EGE07676.1| hypothetical protein TEQG_08765 [Trichophyton equinum CBS 127.97]
Length = 405
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 8/151 (5%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTN------NRMELMAA 56
K+ + Y+DG+ + G G G+ R G + E + + +
Sbjct: 89 KNKDSIIYYSDGSKL-DSGYLGAGIYNFRTSSYRSWGLGTDLEVFDAELFAIEQAFIKGL 147
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ + +Y+ + + + +
Sbjct: 148 KAIKKSSSLINPLFIYSSKKEFWVFIDSQAAIQRLQKSYLEGGEMYVSRIRRIAKELKDR 207
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+++ + W+ H NEK D A+ A S
Sbjct: 208 DYQIKIVWVPAHQNILGNEKADFAAKLGARS 238
>gi|225200237|gb|ACN82422.1| pol polyprotein [Caprine arthritis encephalitis virus Ov496]
Length = 1100
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G + K + G + R A T + +
Sbjct: 573 YTDGGKKN--KVGSLGFITSAGEKVRQHEEGTNQQLELRAIEEALKHGPTTMN------I 624
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + D++T++N A ++++ ++W+ GH G
Sbjct: 625 VTDSRYAFEFLLRDW-----------DEETIRNPIQARIMEIAHKKNRIGIHWVPGHKGI 673
Query: 132 QENEKVDR------IARNA 144
+NE+VDR +AR
Sbjct: 674 PQNEEVDRYISEVFLAREG 692
>gi|145609185|ref|XP_367504.2| hypothetical protein MGG_13379 [Magnaporthe oryzae 70-15]
gi|145016591|gb|EDK01021.1| hypothetical protein MGG_13379 [Magnaporthe oryzae 70-15]
Length = 333
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 1 MDSKHLREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMEL 53
+D ++ YTDG+ N GW L + I+ +
Sbjct: 41 LDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGA 100
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
+ ++A + ++ + DS+ V G + Q + + +
Sbjct: 101 LKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLL 151
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 152 RKQGTEVRVRWCPGHQGIPGNDRADELAKAG 182
>gi|156547120|ref|XP_001602894.1| PREDICTED: similar to cuticle protein LCP65Ac [Nasonia vitripennis]
Length = 256
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+F+ + ++ + YWI H G NE D++A+ AA
Sbjct: 47 KKHNEFISKNPENDIKYYWIPVHVGILGNEMADQLAKEAAE 87
>gi|283444777|gb|ADB20258.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 584 LEKEPMAGVETFYVDGAANRETKAGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ- 642
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 643 ----DSGPEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKER 685
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ N
Sbjct: 686 VYLSWVPAHKGIGGNEQVDKLVSNGIRK 713
>gi|145605242|ref|XP_365495.2| hypothetical protein MGG_13741 [Magnaporthe oryzae 70-15]
gi|145013078|gb|EDJ97719.1| hypothetical protein MGG_13741 [Magnaporthe oryzae 70-15]
Length = 337
Score = 49.5 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|261330744|emb|CBH13729.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 711
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 41/137 (29%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ S G +L R G E + + A++
Sbjct: 367 ELWTDGSVSLGEKSGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLP 426
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
T S + + + + + ++ L ++ GH
Sbjct: 427 AYRTTPSRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRIRLQFVFGHC 486
Query: 130 GNQENEKVDRIARNAAV 146
G + NE D +A+ AA
Sbjct: 487 GVKRNEVCDEMAKKAAD 503
>gi|256011218|gb|ACU55465.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRNTKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|242081781|ref|XP_002445659.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
gi|241942009|gb|EES15154.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
Length = 268
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGA GNPG G G ++R + G TNN E A I LT +
Sbjct: 132 DGASKGNPGKAGAGAIIRRIDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYI 191
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+G S+ + Q+ W+ ++ ++ H
Sbjct: 192 RA------QGDSKLVCNQVQDLWRVKNENMAGLCKKVKVLKGTFHLFQIR------HVLR 239
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 240 EYNSAADAQANFAVE 254
>gi|212382558|gb|ACJ25601.1| pol protein [Human immunodeficiency virus 1]
Length = 940
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKIIHLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|149600747|ref|XP_001520944.1| PREDICTED: similar to pol protein [Ornithorhynchus anatinus]
Length = 624
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 8 EVHAYTDGA------CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
++ +TDG+ C G V+ E + + + + EL A I+A T
Sbjct: 410 DLILFTDGSSYIFEGCRHT----GAAVV---TLNETLWAASLNQGSAQVAELRALIQACT 462
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKV 120
+ + +YTDS Y W+Q G+ T+ + N DL + ++A ++
Sbjct: 463 QAQGKS-INIYTDSRYAFGVCHATGALWKQRGFLTASGGRIANADLIQQLLDAIHLPSQI 521
Query: 121 DLYWIKGHAG-----NQENEKVDRIARNAAVSFKNK 151
+ H ++ N + D AR A + +
Sbjct: 522 AVIHCPAHIRGKDPISRGNARADHEARQAVLRLPRE 557
>gi|242276516|gb|ACS91494.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGASNRETKKGKAGYVTDRGRQKVVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRKI 713
>gi|119602749|gb|EAW82343.1| hCG2041486 [Homo sapiens]
Length = 627
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 11/147 (7%)
Query: 8 EVHAYTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+++ YTDG+ G+ V+ E S T+ ++ + A+ L
Sbjct: 476 DLNLYTDGSSFVEKRLRKAGYAVVSDNGILE---SNPLTPGTSAQLAELIALTQALKLGE 532
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK-FVEASAQHKVDLYW 124
+V +YTDS + W++ + TS+ +K+ + + + +V +
Sbjct: 533 GKRVNIYTDSKNAYLVLHAHAAIWREREFLTSEGTPIKSQEAIRRLQLAVQKPKEVAVLH 592
Query: 125 IKGHAG-----NQENEKVDRIARNAAV 146
+G + N + D A+ AA
Sbjct: 593 CRGDQKGKEREIEGNREADTEAKRAAR 619
>gi|18413532|emb|CAD21860.1| H25N7.03 [Trypanosoma brucei]
Length = 1657
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ S G +L R G E + + A++
Sbjct: 1021 ELWTDGSVSLGEKSGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLP 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
T + + + + + ++ L ++ GH
Sbjct: 1081 AYRTTPRRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRIRLQFVFGHC 1140
Query: 130 GNQENEKVDRIARNAAV 146
G + NE D +A+ AA
Sbjct: 1141 GVKRNEVCDEMAKKAAD 1157
>gi|18413533|emb|CAD21861.1| H25N7.04 [Trypanosoma brucei]
Length = 1657
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ S G +L R G E + + A++
Sbjct: 1021 ELWTDGSVSLGEKSGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLP 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
T + + + + + ++ L ++ GH
Sbjct: 1081 AYRTTPRRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRIRLQFVFGHC 1140
Query: 130 GNQENEKVDRIARNAAV 146
G + NE D +A+ AA
Sbjct: 1141 GVKRNEVCDEMAKKAAD 1157
>gi|82280741|sp|O91080|POL_HV1YF RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|3288390|emb|CAA06810.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1449
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL V +
Sbjct: 1038 YVDGAANRETKLGKAGFVTDRGRQKVVS---IADTTNQKAELQAILMALQESGR--DVNI 1092
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 1093 VTDSQYAMGII-------------HSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 1139
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 1140 GGNEQVDKLVSSGIRKI 1156
>gi|86277519|gb|ABC88248.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGASSRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|145609421|ref|XP_367670.2| hypothetical protein MGG_07581 [Magnaporthe oryzae 70-15]
gi|145016786|gb|EDK01216.1| hypothetical protein MGG_07581 [Magnaporthe oryzae 70-15]
Length = 295
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 40/139 (28%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ YTDG+ ++ NN +++ AA KA +
Sbjct: 181 PDDIVVYTDGS---------------------------EKHENNCVQIWAAAKAQPGARI 213
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V S + + Q + D + +V + W
Sbjct: 214 WICVDST---SVIWGLRGDAPRSSQWAFLEFHDLVDLLRKQGT----------EVRVRWC 260
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G N++ D +A+
Sbjct: 261 PGHQGIPGNDRADELAKAG 279
>gi|169621055|ref|XP_001803938.1| hypothetical protein SNOG_13731 [Phaeosphaeria nodorum SN15]
gi|111057635|gb|EAT78755.1| hypothetical protein SNOG_13731 [Phaeosphaeria nodorum SN15]
Length = 225
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 24/156 (15%)
Query: 10 HAYTDGACSGNPGP---GGWGVLLRYKG------KEKIISGGEKETTNNRMELMAAIKAL 60
+TDGAC+ N P G GV +N R EL AA L
Sbjct: 64 IVFTDGACTHNGNPRARAGAGVAYGNNDLSQLSIPITDDEDHFPLRSNQRAELYAARLGL 123
Query: 61 TALKYPCKVLLY------TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
L + + + + N+DL++
Sbjct: 124 AFLAEAAHINTQEASGKPKNKLADWIIATDSEYVVKGMTEWLPKGTKPLNLDLFLALDSE 183
Query: 115 SAQH-----KVDLYWIKGHAGNQENEKVDRIARNAA 145
+H ++ L+W+ + N+ D +A+ AA
Sbjct: 184 MKKHEANNTRIGLWWVP----REFNKVADGLAKKAA 215
>gi|59003658|gb|AAW83654.1| pol protein [Human immunodeficiency virus 1]
gi|212383299|gb|ACJ25934.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGASNRETKIGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|323464464|gb|ADX76617.1| RNase HI, putative [Staphylococcus pseudintermedius ED99]
Length = 132
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 17/137 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A GNPG GV++ + + + N+ E A + AL +
Sbjct: 3 KIYFDAATKGNPGLSACGVVIVTENERYTFTKVLDAIDNHSAEWEALLFALEQAQTLAVA 62
Query: 70 L--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++TDS + ++ K ++ H +L ++K
Sbjct: 63 NALVFTDSQLIEDAVNREFVKNERFKPY--------------LERYLQMTHDFELAFVKW 108
Query: 128 HAGNQENEKVDRIARNA 144
+N+ +++A++A
Sbjct: 109 -VPRAQNKAANQLAQDA 124
>gi|295314109|gb|ADF97366.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VDR+
Sbjct: 702 GGNEQVDRLVSAGIRKI 718
>gi|170044850|ref|XP_001850044.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867969|gb|EDS31352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 290
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 27/136 (19%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+ YTDG+ GN L Y G+ + +
Sbjct: 149 VYVYTDGSWEGNGTAAACAGLGVYFGEGH----------------------ALNAQGIKR 186
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-----HKVDLY 123
+ + TDS ++ ++W+ W++N WK S K VKN + + + K+
Sbjct: 187 LTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQELAEKSIKIKWN 246
Query: 124 WIKGHAGNQENEKVDR 139
H NE+ D
Sbjct: 247 HADAHCVILGNERADA 262
>gi|145604194|ref|XP_363017.2| hypothetical protein MGG_09635 [Magnaporthe oryzae 70-15]
gi|145012241|gb|EDJ96897.1| hypothetical protein MGG_09635 [Magnaporthe oryzae 70-15]
Length = 337
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKRGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|295413493|gb|ADG07969.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 597 YVDGASSRETKKGKAGYVTDRGRQKAITLTETTNQKAELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKIYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRKI 715
>gi|41056787|gb|AAR98769.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKV---RMLEQTTNQQAELEAFAMALTDSGPKANIIV 679
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 680 --DSQYVMGIVAGQPTESE-------------SRIVNQIIEEMIKKEAIYVAWVPAHKGI 724
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 725 GGNQEVDQLVSQGIRQ 740
>gi|222833164|gb|EEE71641.1| predicted protein [Populus trichocarpa]
Length = 154
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 16/139 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK----IISGGEKETTNNRMELMAAIKALTALKY 65
AY D + NPG G ++ + + + A
Sbjct: 24 TAYIDASAVPNPGRMAMGAVITAPDGRRHLLSEPCPERGCNNEAELRALMAALQTLQALQ 83
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ ++TDSS + + + + + + + V L WI
Sbjct: 84 ARRLTIFTDSSILVEQLTPSPRPIKPIARLADLFDEARTMLTG--------FEHVQLRWI 135
Query: 126 KGHAGNQENEKVDRIARNA 144
H N + D +AR A
Sbjct: 136 PRHR----NTEADALAREA 150
>gi|145613048|ref|XP_364197.2| hypothetical protein MGG_12487 [Magnaporthe oryzae 70-15]
gi|145020112|gb|EDK04340.1| hypothetical protein MGG_12487 [Magnaporthe oryzae 70-15]
Length = 291
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|156153250|gb|ABU54793.1| gag-pro-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 1296 QKGNSAEARGNRMADQAAREVAT 1318
>gi|156153244|gb|ABU54795.1| gag-pro-pol polyprotein [Murine leukemia virus]
gi|156153246|gb|ABU54796.1| gag-pro-pol polyprotein [Murine leukemia virus]
gi|156153248|gb|ABU54797.1| gag-pro-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 1296 QKGNSAEARGNRMADQAAREVAT 1318
>gi|156153242|gb|ABU54794.1| gag-pro-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 1296 QKGNSAEARGNRMADQAAREVAT 1318
>gi|2150144|gb|AAB58752.1| reverse transcriptase [Murine leukemia virus]
Length = 300
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 151 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 207
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 208 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 267
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 268 QKGNSAEARGNRMADQAAREVAT 290
>gi|2281588|gb|AAB64160.1| Pol [synthetic construct]
Length = 1199
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 642 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 758
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 759 QKGNSAEARGNRMADQAAREVAT 781
>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
Length = 701
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
L W+ GH G+ NE DR+A+ A
Sbjct: 245 RLQWVPGHCGDPGNEAADRLAKEA 268
>gi|212530056|ref|XP_002145185.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210074583|gb|EEA28670.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 425
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH G + NE+ D+ A+ AA
Sbjct: 81 RPVTIQWVPGHNGIEGNEQADQAAKRAASK 110
>gi|212528742|ref|XP_002144528.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210073926|gb|EEA28013.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 431
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 17 CSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
GN G G GV+L+ ++ E + G + + + +A++ P +
Sbjct: 107 ALGNNGRTGAGVVLQIVPEAPWEHLELPMGTGFEVFDAELVGVASALEWALERHLPGPIH 166
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ D+ K +++ + V + W+ GH G
Sbjct: 167 VLLDAQNAIKRLQSTEPG---------AGQSLALRAHMAASRLRLSGRPVTIQWVPGHNG 217
Query: 131 NQENEKVDR 139
+ NE+ D+
Sbjct: 218 VEGNEQADQ 226
>gi|212383137|gb|ACJ25865.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVHLTETTNQKTELQAIQIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|170029000|ref|XP_001842382.1| ribonuclease H1 [Culex quinquefasciatus]
gi|167879432|gb|EDS42815.1| ribonuclease H1 [Culex quinquefasciatus]
Length = 135
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 36/146 (24%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V+ YTDG+ GN G GV +SG AI+
Sbjct: 19 VYVYTDGSWEGNGTAAACAGLGVYFGEGHTLNAVSGRATNNCRKFQAAALAIRLAKQQGI 78
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V D + + + K+ +
Sbjct: 79 --TVKNQVDVEELDRELADKSI-------------------------------KIKWSHV 105
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
G NE+ D +AR ++ F+ +
Sbjct: 106 DVDCGILGNERADALARESSAIFRRQ 131
>gi|289608192|emb|CBI60637.1| unnamed protein product [Sordaria macrospora]
Length = 343
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
VD+ W+ GH G NE D +A+ A
Sbjct: 238 VDVRWVPGHKGITGNEIADELAKAGAE 264
>gi|145609057|ref|XP_001409173.1| hypothetical protein MGG_13340 [Magnaporthe oryzae 70-15]
gi|145016504|gb|EDK00934.1| hypothetical protein MGG_13340 [Magnaporthe oryzae 70-15]
Length = 291
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|41056777|gb|AAR98760.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKV---RMLEQTTNQQAELEAFAMALTDSGPKANIIV 679
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 680 --DSQYVMGIVAGQPTESE-------------SRIVNQIIEEMIKKEAIYVAWVPAHKGI 724
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 725 GGNQEVDQLVSQGIRQ 740
>gi|125987635|sp|P0C2F6|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 37/138 (26%), Gaps = 15/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKYP 66
V TDGA GNPG G +LR S + + EL L
Sbjct: 460 VKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 519
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ S+ I + + G S + + V
Sbjct: 520 KV------PRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIV------ 567
Query: 127 GHAGNQENEKVDRIARNA 144
H + N D +A A
Sbjct: 568 -HVYREANRLADGLANYA 584
>gi|212382623|gb|ACJ25629.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKKGRAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y + + + + E + +
Sbjct: 639 ----DSGPEVNIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKKR 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|156144636|gb|ABU52967.1| hypothetical protein [Dunaliella viridis]
Length = 4640
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 11 AYTDGACS-----GNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
AYTDG+C GN G GV + K + + I
Sbjct: 3918 AYTDGSCRKEWHDGNEVQFIGAGVY--HPRTRKACYVQPGG-----VGMTNTINRAELAG 3970
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+L S + Q + ++ + + ++ + + Y
Sbjct: 3971 IYAALLDGHTHIATDSACSLSQIRKQLLFPELQRNHLHSHLLQPIVRIIENSPNTIHFYK 4030
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+K HAG NE D IA+++A
Sbjct: 4031 VKAHAGIAGNEFADAIAKHSAQ 4052
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 13/142 (9%)
Query: 11 AYTDGACS--GNPGP----GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
AYTDG+C + G G GV + + + + I
Sbjct: 1105 AYTDGSCITEWHDGKEVQFIGAGVY--HPRTRRACYVQPGG-----VGMTNTINRAELAG 1157
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+L S + Q + ++ + + + + Y
Sbjct: 1158 IYAALLDRHTHIATDSACSLSQIRRQLLFPELQRNHLHSHLLQPIVRMIEDSPDTIHFYK 1217
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
+K HAG NE D IA+++A
Sbjct: 1218 VKAHAGIAGNEFADAIAKHSAQ 1239
>gi|294805668|gb|ADB82817.2| pol protein [Simian immunodeficiency virus]
Length = 1010
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + TTN + EL A + AL KV +
Sbjct: 604 YVDGAANRESKEGKAGYISERGKQSV---KALENTTNQKAELTAVLMALEDSGE--KVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV ++ + + ++ K +V L W+ H G
Sbjct: 659 VTDSQYVLNILTEHPTTTEHELVEKIIQQLQKKQ-------------EVYLQWVPAHKGL 705
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 706 GGNEQIDKLVSKGIRKI 722
>gi|300860395|ref|ZP_07106482.1| ribonuclease HI [Enterococcus faecalis TUSoD Ef11]
gi|300849434|gb|EFK77184.1| ribonuclease HI [Enterococcus faecalis TUSoD Ef11]
Length = 135
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D A GNPG G G++ + + +N+ E I+AL
Sbjct: 2 LRIYLDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQA----- 56
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D+ S Q + + + + +E + + + W+
Sbjct: 57 -IANEDNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPL-LLIKWLP-- 112
Query: 129 AGNQENEKVDRIARNAAVSF 148
+N+ D +AR A F
Sbjct: 113 --ESQNKAADMLARQALQKF 130
>gi|193794907|gb|ACF21599.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRETKKGKAGYVTDKGRQKVVPLTETTNQKAELQAIYLALQ-----DSESEVNV 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 692 GGNEQVDKLVSAGIRKI 708
>gi|82571370|gb|ABB84131.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVHLTETTNQKTELQAIQIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|169599120|ref|XP_001792983.1| hypothetical protein SNOG_02376 [Phaeosphaeria nodorum SN15]
gi|160704541|gb|EAT90588.2| hypothetical protein SNOG_02376 [Phaeosphaeria nodorum SN15]
Length = 505
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 8/150 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+ + DG+ + G G GV KE T + + A +
Sbjct: 110 TIVYWCDGSAA--QGFLGAGVAWTDSDKEMSEEYELGYNTGSSQDAELFAIAAALGQAKL 167
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH------KVD 121
+V D V + N + + + ++ + +V+
Sbjct: 168 EVQRGRDVQLVRIYTDAQMVLKALNDGTRCPLGPLVSAETALEGLYERTDFLTNAGIEVE 227
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
L W+KGH+ ++ N D +A A S +
Sbjct: 228 LLWVKGHSNSRGNCLADEVADRAVKSQIRR 257
>gi|145601905|ref|XP_001403263.1| hypothetical protein MGG_14409 [Magnaporthe oryzae 70-15]
gi|145010367|gb|EDJ95023.1| hypothetical protein MGG_14409 [Magnaporthe oryzae 70-15]
Length = 291
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPENHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|46486637|gb|AAS98743.1| pol protein [Human immunodeficiency virus 1]
gi|57338564|gb|AAW49358.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETKKGRAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y + + + + E + +
Sbjct: 639 ----DSGPEVNIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKKR 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|145601462|ref|XP_366112.2| hypothetical protein MGG_08961 [Magnaporthe oryzae 70-15]
gi|145009527|gb|EDJ94194.1| hypothetical protein MGG_08961 [Magnaporthe oryzae 70-15]
Length = 287
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|118370087|ref|XP_001018246.1| RNase H family protein [Tetrahymena thermophila]
gi|89300013|gb|EAR98001.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 726
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 15/134 (11%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG GNPG G G +++ E S T N+ E +A I +
Sbjct: 603 DGTSKGNPGRSGAGFIIKDLYTENKLLEYSVEVGTKTINQSEYLALIYGMYTCYKLGI-- 660
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+G S+ + K ++ ++ + +L E +K
Sbjct: 661 ----KQLTIQGDSEVVIKHMLGVYQCRSQQLREYYNLAKILDELFHFKD--YVQVK---- 710
Query: 131 NQENEKVDRIARNA 144
+ N + D +A A
Sbjct: 711 KELNTEADALANLA 724
>gi|18076258|emb|CAC82502.1| Pol protein [Porcine endogenous retrovirus]
Length = 1144
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + + S + T+ + ELM A+ L + +
Sbjct: 591 FTDGSSYVVKGKRMAGPPVVDGTRTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +KN + + +EA ++ + GH
Sbjct: 650 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQK 709
Query: 131 -----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 710 AKDPISRGNQMADRVAKQAAQ 730
>gi|68522075|gb|AAY98668.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 603 YVDGAANRDSKIGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 705 GGNEQVDKLVSRGIRK 720
>gi|327190631|gb|EGE57719.1| ribonuclease HI [Rhizobium etli CNPAF512]
Length = 117
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTS-------DKKTVKNIDLWMKFVEASAQHKVDLY 123
+++DS Y KG + W W+ NGWK S + ++ S V +
Sbjct: 24 IWSDSVYAVKGCNSWRPIWKNNGWKKSSPNGNARKRTIANADLWKAIDLQLSRNALVTIA 83
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
W KGH+G NE+ D +A +S
Sbjct: 84 WCKGHSGIAGNERADALADRGRLSL 108
>gi|160900143|ref|YP_001565725.1| ribonuclease H [Delftia acidovorans SPH-1]
gi|160365727|gb|ABX37340.1| ribonuclease H [Delftia acidovorans SPH-1]
Length = 154
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 16/139 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK----IISGGEKETTNNRMELMAAIKALTALKY 65
AY D + NPG G ++ + + + A
Sbjct: 24 TAYIDASAVPNPGRMAMGAVITAPDGRRHLLSEPCHERGCNNEAELRALMAALQALQGLQ 83
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ ++TDSS + + + ++ + + + V L WI
Sbjct: 84 ARRLTIFTDSSILVEQLTPSLRPIKPIARLADLFDEARTMLTG--------FEHVQLRWI 135
Query: 126 KGHAGNQENEKVDRIARNA 144
H N + D +AR A
Sbjct: 136 PRHR----NTEADALAREA 150
>gi|93210853|gb|ABF00812.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + V Y DGA + G + +G++K+IS E TTN + EL A + A
Sbjct: 586 LEKDPMVGVETFYVDGAANRET-KAGKAGYVTDRGRQKVISLTE--TTNQKTELQAILLA 642
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L +V + TDS Y G + ++ + + + +
Sbjct: 643 LQDSG--SEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKER 687
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 688 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 715
>gi|20152979|gb|AAM13444.1|AF474246_2 pol polyprotein [Feline immunodeficiency virus]
Length = 1130
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK E E +N + E+ A + AL A ++
Sbjct: 605 YIDGGRKR--GKAAKAAYWTDTGK---WQVMEIEGSNQKAEVQALLLALKAGPEEMNII- 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ SQ + E + + + W+ GH G
Sbjct: 659 -TDSQYIVNLISQQ--------------PDMMEGVWQEVLEELEKKVAIFIDWVPGHKGI 703
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 704 PGNEEVDKL 712
>gi|145614849|ref|XP_001414094.1| hypothetical protein MGG_14025 [Magnaporthe oryzae 70-15]
gi|145021778|gb|EDK05855.1| hypothetical protein MGG_14025 [Magnaporthe oryzae 70-15]
Length = 337
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA-----IK 58
++ YTDG+ N G+G G E ++ + A ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGAAFITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIGICVDSTSVIWGLRGDAPRSSQWAF---------LEFYNLVDLLRKQST 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|145606725|ref|XP_001407199.1| hypothetical protein MGG_12030 [Magnaporthe oryzae 70-15]
gi|145014391|gb|EDJ98959.1| hypothetical protein MGG_12030 [Magnaporthe oryzae 70-15]
Length = 304
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 17 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 76
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 77 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 127
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 128 EVRVRWCPGHQGIPGNDRADELAKAG 153
>gi|237874772|gb|ACR27141.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + K + ETTN + EL A AL +V +
Sbjct: 600 YVDGAANKETKKGKAGYV---TDRGKEKAVPLTETTNQKAELQAIHLALQDSG--SEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRKI 718
>gi|302594734|gb|ADL59555.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKRGKAGYVTDRGRQKIVSLTETTNQKAELQAIQIALQESGP-----EVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKERVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|209156841|gb|ACI39897.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A + AL +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQK---AVSLTETTNQKAELQAILIALQDSGP--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|145607830|ref|XP_001408103.1| hypothetical protein MGG_13602 [Magnaporthe oryzae 70-15]
gi|145015327|gb|EDJ99863.1| hypothetical protein MGG_13602 [Magnaporthe oryzae 70-15]
Length = 214
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
++ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSASITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHD---------LVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|11385965|gb|AAG35046.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 395 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSQVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRKI 513
>gi|12407074|emb|CAC24835.1| polymerase [Human immunodeficiency virus 1]
Length = 1001
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKKGKAGYVTDKGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQSDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRKI 712
>gi|29119316|gb|AAO63232.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGKQKTVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|86753543|gb|ABD14972.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGRAGYVTDKGRQKIVSLTETTNQKAELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|331242414|ref|XP_003333853.1| hypothetical protein PGTG_15276 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312843|gb|EFP89434.1| hypothetical protein PGTG_15276 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 313
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 52/139 (37%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G G V + + A +++ +
Sbjct: 55 NSLVIFTDGSWIPDKGAGAAAVAIFSDNQG------------------ALMRSSDPISLS 96
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++TD+ + K + L+W
Sbjct: 97 SGQSIFTDNFFQMKLL----------------------------------GRPIRLFWCP 122
Query: 127 GHAGNQENEKVDRIARNAA 145
GH G + NEK D +A+ AA
Sbjct: 123 GHEGIEANEKADSLAKKAA 141
>gi|308493295|ref|XP_003108837.1| CRE-RNH-1.0 protein [Caenorhabditis remanei]
gi|308247394|gb|EFO91346.1| CRE-RNH-1.0 protein [Caenorhabditis remanei]
Length = 194
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 10 HAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
YTDGACS N GWGV + TNNR EL+A
Sbjct: 135 VVYTDGACSSNGTNRARAGWGVYWGDDSPDNEYGAVYGAPTNNRGELIAV 184
>gi|257388914|ref|YP_003178687.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
gi|257171221|gb|ACV48980.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
Length = 220
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ GNPGP G G +++ + E ++ +R + A A AL +
Sbjct: 84 ILYVDGSSRGNPGPAGAGAVVQDEAGESLL--RLARPVGSRTDNNTAEYAALALGLARLL 141
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + + S+ + + +D D +
Sbjct: 142 AQFEPARIEVRIDSRTVIRSVWEE--RADPGAQFREYRAAVVALLERAPDDDWRHLADSD 199
Query: 130 GNQENEKVDRIARNAAV 146
N D +A A
Sbjct: 200 PNP----ADALATVGAD 212
>gi|28892671|gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [amphotropic murine leukemia virus]
Length = 1736
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 1295
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 1296 QKGNSAEARGNRMADQAAREVAT 1318
>gi|9965930|gb|AAG10201.1| polyprotein [Murine leukemia virus]
Length = 669
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 152 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 208
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 209 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 268
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 269 QKGNSAEARGNRMADQAAREVAT 291
>gi|9629516|ref|NP_044738.1| Pol [Rauscher murine leukemia virus]
gi|2228759|gb|AAB86912.1| Pol [Rauscher murine leukemia virus]
Length = 1204
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 647 YTDGSSFLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 703
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 704 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 763
Query: 129 A-GNQ----ENEKVDRIARNAAV 146
GN+ N D+ AR A
Sbjct: 764 QKGNRAEARGNRMADQAAREVAT 786
>gi|13891872|gb|AAG50315.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSESEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|17046593|gb|AAL34626.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAASRDTKIGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDNSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|49574402|gb|AAT66869.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVS---LTDTTNQRTELQAIHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELLKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ R
Sbjct: 543 GGNEQVDKLVRTGIRK 558
>gi|130643|sp|P26808|POL_MLVFP RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
gi|331900|gb|AAA46477.1| pol protein [Friend murine leukemia virus]
Length = 1204
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 647 YTDGSSFLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 703
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + ++A ++ + GH
Sbjct: 704 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKEEILALLKALFLPKRLSIIHCPGH 763
Query: 129 A-GNQ----ENEKVDRIARNAAV 146
GN+ N D+ AR A
Sbjct: 764 QKGNRAEARGNRMADQAAREVAT 786
>gi|212383225|gb|ACJ25903.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + + + A++ +V +
Sbjct: 605 YVDGAANRNTKIGKAGYVTDRGRQRIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + L W+ H G
Sbjct: 660 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRAYLSWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 707 GGNEQVDKLVSNGIRK 722
>gi|121645185|gb|ABM63546.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + +G++K++S E ++ + +V +
Sbjct: 595 YVDGAAYRETKKGKAGYV-TDRGRQKVVSLTETTNQKTELQAINL----ALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+ N
Sbjct: 697 GGNEQVDRLVSNGIRK 712
>gi|92870995|gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
Length = 438
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTAL---KYPC 67
DG+C G P G+G +LR I SG +T+ + AI +
Sbjct: 285 VDGSCLGTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAELTAIHQSLHMVIDSNMN 344
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V+ Y+DS ++ + K + ++
Sbjct: 345 DVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNIKDLLSVRNITLH---------------- 388
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + N+ D A+ A S
Sbjct: 389 HTLREGNQCADFFAKLGANS 408
>gi|6093158|emb|CAB58989.1| POL protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G + +G++K++S E ++ + +V +
Sbjct: 596 YVDGAAHRETKK-GRAGYVTDRGRQKVVSITETTNQKAELQAICL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKERIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|270301384|gb|ACZ69568.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 602 YVDGAASRETKKGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESEIVTQIIEQLIKKERVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|299745166|ref|XP_001831512.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
gi|298406463|gb|EAU90359.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
Length = 289
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ KF+++ ++ + L W H G NE+VDR+A+ A
Sbjct: 49 YETATKFLDSDPRNHIHLTWCPSHHGIPGNERVDRLAKQA 88
>gi|37935970|gb|AAO47208.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I M ++ A+K V +
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQKAELMAILLALK-----DSKETVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS + S + + + E + + +V L W+ H G
Sbjct: 647 VTDSQFALGIISSQPTQS-------------DSPIVQQIIEELTKKEQVYLAWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|67553015|gb|AAY68610.1| pol protein [Human immunodeficiency virus 1]
Length = 1017
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + + + A++ +V +
Sbjct: 606 YVDGAANRNTKIGKAGYVTDRGRQRIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRAYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 708 GGNEQVDKLVSNGIRK 723
>gi|5668940|gb|AAD46088.1|AF077336_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1004
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KGK+K++S E TTN + EL A AL +V +
Sbjct: 597 YVDGASNRETKKGKAGYV-TDKGKQKVVSLTE--TTNQKAELQAIYLALQDSG--SEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGVRKI 715
>gi|156036352|ref|XP_001586287.1| hypothetical protein SS1G_12865 [Sclerotinia sclerotiorum 1980]
gi|154698270|gb|EDN98008.1| hypothetical protein SS1G_12865 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 562
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + A
Sbjct: 272 DIVIFSDGSKLANGNTGG-GFVGYQDNHKFCEGSLPLGRMKEVYDSEAIAAFEGLKAAIS 330
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + S + + + V + W+ G
Sbjct: 331 SIESRIATDIYICLDNIEVAAR---LLSKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 387
Query: 128 HAGNQENE 135
H NE
Sbjct: 388 HKDVAGNE 395
>gi|156037410|ref|XP_001586432.1| hypothetical protein SS1G_12417 [Sclerotinia sclerotiorum 1980]
gi|154697827|gb|EDN97565.1| hypothetical protein SS1G_12417 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1549
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + A
Sbjct: 1249 DIVIFSDGSKLANGNTGG-GFVGYQDNHKFCEGSLPLGRMKEVYDSEAIAAFEGLKAAIS 1307
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + S + + + V + W+ G
Sbjct: 1308 SIESRIATDIYICLDNIEVAAR---LLSKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 1364
Query: 128 HAGNQENE 135
H NE
Sbjct: 1365 HKDVAGNE 1372
>gi|156030909|ref|XP_001584780.1| hypothetical protein SS1G_14235 [Sclerotinia sclerotiorum 1980]
gi|154700626|gb|EDO00365.1| hypothetical protein SS1G_14235 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 635
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + A
Sbjct: 335 DIVIFSDGSKLANGNTGG-GFVGYQDNHKFCEGSLPLGRMKEVYDSEAIAAFEGLKAAIS 393
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + S + + + V + W+ G
Sbjct: 394 SIESRIATDIYICLDNIEVAAR---LLSKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 450
Query: 128 HAGNQENE 135
H NE
Sbjct: 451 HKDVAGNE 458
>gi|156042568|ref|XP_001587841.1| hypothetical protein SS1G_11082 [Sclerotinia sclerotiorum 1980]
gi|154695468|gb|EDN95206.1| hypothetical protein SS1G_11082 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1432
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + A
Sbjct: 1132 DIVIFSDGSKLANGNTGG-GFVGYQDNHKFCEGSLPLGRMKEVYDSEAIAAFEGLKAAIS 1190
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + S + + + V + W+ G
Sbjct: 1191 SIESRIATDIYICLDNIEVAAR---LLSKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 1247
Query: 128 HAGNQENE 135
H NE
Sbjct: 1248 HKDVAGNE 1255
>gi|242826126|ref|XP_002488578.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712396|gb|EED11822.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 599
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 9/143 (6%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAA---IKALTA 62
Y+D + N G V+L K G + + EL+ I
Sbjct: 307 VVYSDASGHDNH-LGAAAVVLDRNQNIVASRKTAIGSMAHWSIHIAELIGVYYAISLALK 365
Query: 63 LKYPCKVLLYTDS-SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + + + + + + ++ V + S +
Sbjct: 366 IFHQNGQSTRPGAGEAITILSNSKSAIQAIKNPRNTSRQRVIEAINQSAYELDSRGIPLR 425
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
L WI GH + N+ DR+A+ A
Sbjct: 426 LQWIPGHCDDLGNDAADRLAKAA 448
>gi|15055097|gb|AAK82844.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ Y + K + TTN + EL A + AL +
Sbjct: 609 YVDGAANRNSKEGKAGY-----YTARGKSKVIALENTTNQKAELEAILLALKDSGPRANI 663
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS Y S + N + + A+ V L W+ H
Sbjct: 664 --VTDSQYALGILS-------------ATPDRSDNPIVREIINQMIAKEAVYLAWVPAHK 708
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 709 GIGGNEQIDKLVSKGIRQ 726
>gi|37935911|gb|AAO47155.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANRDTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLVALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|49574407|gb|AAT66871.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ R
Sbjct: 543 GGNEQVDKLVRTGIRK 558
>gi|295413483|gb|ADG07960.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETRKGKAGYVTDRGRQKVASLTETTNQKSELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|295413473|gb|ADG07951.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|302906464|ref|XP_003049488.1| hypothetical protein NECHADRAFT_82905 [Nectria haematococca mpVI
77-13-4]
gi|256730423|gb|EEU43775.1| hypothetical protein NECHADRAFT_82905 [Nectria haematococca mpVI
77-13-4]
Length = 667
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 7 REVHAYTDGACSGNPG---PGGWGVLLRYKGKEKIIS--------------GGEKETTNN 49
V AYTDGAC N GW V+ G ++ S G + T+N
Sbjct: 278 NRVLAYTDGACINNGQLEPRAGWAVVFGKPGSDQEGSQNVVSSRLENEGPFGDDSVATSN 337
Query: 50 RMELMAAIKALTALKYPC----KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
R EL AAI AL + +++ TDSSYV +G + W K W + GW T VKN
Sbjct: 338 RAELRAAIAALRVCDWHDEGFKNIVIATDSSYVVQGATSWAKNWVRKGWTTRVGGNVKNK 397
Query: 106 DLW 108
DLW
Sbjct: 398 DLW 400
>gi|41223200|emb|CAD92649.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 501 YVDGAANRETKLGKAGFVTDRGRQKVVSIEXTTNQKAELQAILMALQESGQ-----EVNI 555
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 556 VTDSQYAMGII-------------HSQPDKSESNLVSQIIEELIKKERVYLSWVPAHKGI 602
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 603 GGNEQVDKLVSSGIRK 618
>gi|38892774|gb|AAR27765.1| pol protein [Human immunodeficiency virus 1]
Length = 812
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKIVPLTETTNQKTELQAIQIALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIHGLPDKSE-------------SELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSRGIRK 709
>gi|53749064|dbj|BAD52416.1| POL polyprotein precursor [Murine leukemia virus]
Length = 1199
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 642 YTDGSSFLQKGQRKAGAAV---TTETEVIWAKALPSGTSAQRAELIALTQALKMAEGKKL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 758
Query: 129 A-GN----QENEKVDRIARNAAVS 147
GN + N D+ AR A
Sbjct: 759 QKGNSAEARGNRMADQAAREIASK 782
>gi|53749060|dbj|BAD52413.1| POL polyprotein precursor [Murine leukemia virus]
Length = 1199
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 642 YTDGSSFLQKGQRKAGAAV---TTETEVIWAKALPSGTSAQRAELIALTQALKMAEGKKL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 758
Query: 129 A-GN----QENEKVDRIARNAAVS 147
GN + N D+ AR A
Sbjct: 759 QKGNSAEARGNRMADQAAREIASK 782
>gi|47176919|gb|AAT12494.1| pol polyprotein [Feline immunodeficiency virus]
Length = 1124
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G Y E E +N + E+ A + AL A ++
Sbjct: 599 YIDG-----GRKRGKAAKAAYWTNTGKWQVMEIEGSNQKAEVQALLLALKAGPEEMNII- 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ SQ + E + + + W+ GH G
Sbjct: 653 -TDSQYIVNIISQQ--------------PDMMEGVWQEVLEELEKKVAIFIDWVPGHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 PGNEEVDKL 706
>gi|50548363|ref|XP_501651.1| YALI0C09658p [Yarrowia lipolytica]
gi|49647518|emb|CAG81956.1| YALI0C09658p [Yarrowia lipolytica]
Length = 256
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 11 AYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TAL 63
Y +G C N G+ ++ + + + T R +L A +
Sbjct: 3 IYCEGLCRNNGTKFAKAGYAIVFGLQDPRNVSMRLDGAQTTQRADLAAISHLVTLLLQDN 62
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-----SAQH 118
+ T S ++ ++ + W++ GW ++ V+N+DL + +
Sbjct: 63 TPTTTYSVSTHSKWLVSTVNENLDNWKRAGWTNQAREKVENLDLLQQLDKLLTQLGQQGK 122
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V + +++ + + D++A + +
Sbjct: 123 SVHMEFVRMQEASPAHVLADKLANAGCDLQQGPV 156
>gi|263200931|gb|ACY70037.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 594 YVDGAASRETKIGKAGYVTDRGKQKIITLTDTTNQKTELQAIQLALQ-----DSGXEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|212382960|gb|ACJ25779.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDSKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSRGIRK 716
>gi|86651866|gb|ABD14433.1| gag-pro-pol polyprotein [Mus musculus]
Length = 1734
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|86651882|gb|ABD14436.1| gag-pro-pol polyprotein [Mus musculus]
Length = 1734
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|86651894|gb|ABD14439.1| gag-pro-pol polyprotein [Murine leukemia virus]
Length = 1734
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + I M ++ A++ +V +
Sbjct: 593 YVDGAANRDTKSGKAGYVTEQGKQRIIKLEETTNQKAELMAILLALQ-----DSKEQVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + E + + +V L W+ H G
Sbjct: 648 VTDSQYALGIISSQPTQS-------------DSPIVQQIIEELTKKEQVYLTWVPAHKGI 694
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 695 GGNEKIDKL 703
>gi|5881091|gb|AAD55051.1| putative gag-pol polyprotein [Murine leukemia virus]
Length = 1734
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|199851|gb|AAA39757.1| pol protein [Mus musculus]
Length = 707
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 153 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 209
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 210 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 269
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 270 QKGDSAEARGNRLADQAAREAAIK 293
>gi|331995|gb|AAB03091.1| gag-pol polyprotein (tag amber codon at 2250-2252 inserts Gln in
Mo-MuLV) [AKR (endogenous) murine leukemia virus]
Length = 1734
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1180 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 1236
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 1237 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 1296
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1297 QKGDSAEARGNRLADQAAREAAIK 1320
>gi|927201|gb|AAA79247.1| putative reverse transcriptase [Murine leukemia virus]
Length = 1038
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 484 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 540
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 541 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 600
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 601 QKGDSAEARGNRLADQAAREAAIK 624
>gi|13959690|sp|P03356|POL_MLVAV RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
Length = 1196
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 642 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 758
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 759 QKGDSAEARGNRLADQAAREAAIK 782
>gi|126340090|ref|XP_001370557.1| PREDICTED: similar to Complement C1r subcomponent precursor
(Complement component 1, r subcomponent) [Monodelphis
domestica]
Length = 1060
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 9/130 (6%)
Query: 24 GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83
G+ + E I +G T+ + + A+ L +V +YTDS Y
Sbjct: 82 AGYAI---TTTAEVIEAGHLPSATSAQQAELEAVTRACELAKGKRVNIYTDSRYAFGVAH 138
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKGHA----GN-QENEKV 137
+ WQ G+ TS +KN + +EA K + + I GH+ + + N
Sbjct: 139 DFGMLWQHRGYLTSSGTPIKNGAQVRRLLEALLLPKAIAIIKIPGHSRENSPHAKGNALA 198
Query: 138 DRIARNAAVS 147
D+ A+ AA
Sbjct: 199 DQYAKEAARQ 208
>gi|124359510|gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
DG+C G P G+G + R G + E + A + ++
Sbjct: 1143 VDGSCLGTPIRAGFGGIFRNNVG-----GYLSGYSGFISESTDILLAELTALHQGLIMAA 1197
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
+S + TS T + +K + ++ V H +
Sbjct: 1198 EMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDIKDLLSAHNFSVY------HCFRE 1251
Query: 133 ENEKVDRIARNAAVS 147
N+ D +A+ A S
Sbjct: 1252 GNQCADYLAKLGASS 1266
>gi|145605860|ref|XP_001406513.1| hypothetical protein MGG_06813 [Magnaporthe oryzae 70-15]
gi|145013632|gb|EDJ98273.1| hypothetical protein MGG_06813 [Magnaporthe oryzae 70-15]
Length = 725
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 31/139 (22%), Gaps = 38/139 (27%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ YTDG+ + E R L A +
Sbjct: 427 PNDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGLEFAAGSAFITPE 470
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
D + + T +V + W
Sbjct: 471 SHVFDRRGDWRPKRATGGSQGPTRRPDLDFT----------------------EVRVRWC 508
Query: 126 KGHAGNQENEKVDRIARNA 144
GH G N++ + +A+
Sbjct: 509 PGHQGIPGNDRANELAKAG 527
>gi|17046713|gb|AAL34734.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ETTN R EL A L +V +
Sbjct: 592 YVDGAANRDTKKGKAGYVTDRGRQKIVS---LTETTNQRTELQAI--QLALQDSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|67866569|gb|AAY82301.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + K+TTN + EL A + AL +V +
Sbjct: 603 YVDGAANRETKLGKAGFVTDRGRQKVVS---IKDTTNQKTELHAILMALQESGQ--EVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 658 VTDSQYAMGII-------------HSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|322371041|ref|ZP_08045594.1| ribonuclease HI [Haladaptatus paucihalophilus DX253]
gi|320549476|gb|EFW91137.1| ribonuclease HI [Haladaptatus paucihalophilus DX253]
Length = 217
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ Y DG+ GNPGP G G ++ ++++ ++ A L
Sbjct: 79 DTLVLYVDGSSRGNPGPAGAGAVIMDAAEDQLA--RLGRPVGSQTGNNTAEYVALQLGLS 136
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ Y + S + + G ++ + + +H+
Sbjct: 137 ELLVRYEPRRLEVRIDSMTVIRDVWGGDDPTEPGVETYSEAITVALSNIPEHQYT----- 191
Query: 127 GHAGNQENEKVDRIARNAAV 146
H + + D +A A
Sbjct: 192 -HLADSDPNPADALATVGAD 210
>gi|238632968|gb|ACR51076.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIYKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|82571300|gb|ABB84068.1| pol protein [Human immunodeficiency virus 1]
gi|212382672|gb|ACJ25651.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I ETT+ + EL A L +V +
Sbjct: 599 YVDGASSRETKKGKAGYVADRGRQKIIN---LNETTSQKAELQAI--QLALQDSGAEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|212382753|gb|ACJ25686.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 592 YVDGAASRETKIGKAGYVTDKGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|26245450|gb|AAN77380.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E ++ + +V +
Sbjct: 591 YVDGAANRET-KMGKAGYVTDKGRQKIVSLTETTNQKAELQAIQL----ALQDSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 693 GGNEQVDKLVSKGIRK 708
>gi|11385963|gb|AAG35045.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 395 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRKI 513
>gi|85700585|gb|ABC74695.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKKGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGPEVNV 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|306478231|gb|ADM89490.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 350 YVDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 404
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 405 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 451
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++A +
Sbjct: 452 GGNEQVDKLASSGIRK 467
>gi|242760633|ref|XP_002340030.1| hypothetical protein TSTA_061330 [Talaromyces stipitatus ATCC
10500]
gi|218723226|gb|EED22643.1| hypothetical protein TSTA_061330 [Talaromyces stipitatus ATCC
10500]
Length = 139
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
W+ GH G NEK D++A+ AAV +
Sbjct: 91 WVPGHKGVPGNEKADQLAKLAAVEATRR 118
>gi|167651325|gb|ABZ91120.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + + K+K++S E ++ + +V +
Sbjct: 592 YVDGAANRETN-MGKAWYVTDRRKQKVVSLSETTNHKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|73913884|gb|AAZ91856.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKDPMVGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|192824267|ref|YP_001994914.1| hypothetical mature RT protein [Friend murine leukemia virus]
Length = 671
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E + + T+ + + A+ + K+
Sbjct: 521 YTDGSSFLQEGQRKAGAAV---TTETEVVWAKALPAGTSAQRAELIALTQALKMAEGKKL 577
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 578 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 637
Query: 129 A-GNQ----ENEKVDRIARNAAV 146
GN+ N D+ AR A
Sbjct: 638 QKGNRAEARGNRMADQAAREVAT 660
>gi|110815949|sp|Q9QSR3|POL_HV1VI RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1430
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KGK+K++S E TTN + EL A AL +V +
Sbjct: 1023 YVDGASNRETKKGKAGYV-TDKGKQKVVSLTE--TTNQKAELQAIYLALQDSG--SEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1078 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1125 GGNEQVDKLVSAGVRKI 1141
>gi|59003549|gb|AAW83556.1| pol protein [Human immunodeficiency virus 1]
gi|212383179|gb|ACJ25883.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|15788278|gb|AAL07727.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVSLPETTNQKAELHAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|4071076|gb|AAC98548.1| pol polypeptide [Murine leukemia virus]
Length = 1204
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 647 YTDGSSFLQEGQRKAGAAV---TTETEVIWAKALPSGTSAQRAELIALTQALKMAEGKKL 703
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + ++A ++ + GH
Sbjct: 704 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGH 763
Query: 129 A-GN----QENEKVDRIARNAAVS 147
GN + N D+ AR A
Sbjct: 764 QKGNSAEARGNRMADQAAREIASK 787
>gi|85700625|gb|ABC74731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSRGIRK 713
>gi|16118341|gb|AAL12710.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 605 YVDGASNRETKKGKAGYVTDRGRQKTVS---LTETTNQKAELHAI--QLALQDSGSEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 707 GGNEQVDKLVSAGIRKI 723
>gi|9626097|ref|NP_040333.1| Pol polyprotein [Friend murine leukemia virus]
gi|130642|sp|P26809|POL_MLVFF RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
gi|1335560|emb|CAA77477.1| RNA-dependent DNA polymerase [Friend murine leukemia virus]
Length = 1204
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E + + T+ + + A+ + K+
Sbjct: 647 YTDGSSFLQEGQRKAGAAV---TTETEVVWAKALPAGTSAQRAELIALTQALKMAEGKKL 703
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 704 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 763
Query: 129 A-GNQ----ENEKVDRIARNAAV 146
GN+ N D+ AR A
Sbjct: 764 QKGNRAEARGNRMADQAAREVAT 786
>gi|237874782|gb|ACR27150.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E ++ + +V
Sbjct: 600 YVDGASSRETKQGKAGY---VTDRGRQKVVSLTETTNQKAELQAIQL----ALQDSGSEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRKI 718
>gi|87115982|gb|ABD19526.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKIVSLMETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|86147029|ref|ZP_01065347.1| ribonuclease HI [Vibrio sp. MED222]
gi|85835279|gb|EAQ53419.1| ribonuclease HI [Vibrio sp. MED222]
Length = 100
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF-VEASAQHKVDLYWIKGHAG 130
Y DS Y ++W W++ GW S + + + + K+ +Y + GH G
Sbjct: 1 YCDSKYSIDCITKWATGWEKKGWTKSGGEIKNLDIIKPAYALYQELASKITIYHVNGHVG 60
Query: 131 NQENEKVDRIARNAAVSFKNKI 152
+ NE DR++ A S + ++
Sbjct: 61 IEGNELADRMSIVAISSKEQEL 82
>gi|229560381|gb|ACQ77153.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ KV +
Sbjct: 603 YVDGAANRDTKRGKAGYVTDRGRQKAVPLTETTNQKAELQAIQIALQ-----DSGSKVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIELLINKEQVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 705 GGNEQVDKLVSAGIRKI 721
>gi|535518|gb|AAA92679.1| gag-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + ++
Sbjct: 1179 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQPAELIALTQALKMAEGKRL 1235
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + + ++A ++ + GH
Sbjct: 1236 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPRRLSIIHCLGH 1295
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 1296 QKGDSAEARGNRLADQAAREAAIK 1319
>gi|227551397|ref|ZP_03981446.1| ribonuclease H [Enterococcus faecium TX1330]
gi|257887494|ref|ZP_05667147.1| RNase H [Enterococcus faecium 1,141,733]
gi|257895989|ref|ZP_05675642.1| RNase H [Enterococcus faecium Com12]
gi|293377447|ref|ZP_06623649.1| ribonuclease HI [Enterococcus faecium PC4.1]
gi|293570499|ref|ZP_06681554.1| ribonuclease HI [Enterococcus faecium E980]
gi|227179516|gb|EEI60488.1| ribonuclease H [Enterococcus faecium TX1330]
gi|257823548|gb|EEV50480.1| RNase H [Enterococcus faecium 1,141,733]
gi|257832554|gb|EEV58975.1| RNase H [Enterococcus faecium Com12]
gi|291609445|gb|EFF38712.1| ribonuclease HI [Enterococcus faecium E980]
gi|292643965|gb|EFF62073.1| ribonuclease HI [Enterococcus faecium PC4.1]
Length = 134
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 19/147 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK---- 64
+ Y D + GNPGP G G+L+ Y+GK++ +S TN++ E +K L LK
Sbjct: 2 LKVYIDASTKGNPGPSGGGILIVYQGKQEQLSIPLSVGTNHQAEFEVFLKTLEFLKNKGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ ++DS + + K + K D + ++ ++K
Sbjct: 62 QNETIFCFSDSKTLVSTVDKNTTKNELFLPYLQKIKE-LLPDFSLLILQWLPENK----- 115
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
N+ D +AR A +
Sbjct: 116 ---------NKGADNLARQALQKQLKE 133
>gi|217076974|ref|YP_002334690.1| ribonuclease H-related protein [Thermosipho africanus TCF52B]
gi|217036827|gb|ACJ75349.1| ribonuclease H-related protein [Thermosipho africanus TCF52B]
Length = 147
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 6/139 (4%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ + G+ + + K E + + + AL+Y +
Sbjct: 2 QIYVDGSYYDDLNIAGFSFCVVENEEIKFTYKDAMEINRGNSIIAELLGVIKALEYCNNL 61
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + + K K + Q +V +K H
Sbjct: 62 GVKE------VTIIHDYNEIPMLASSYRNTKNPYINSYARKLRQFCQQLQVSFVKVKAHK 115
Query: 130 GNQENEKVDRIARNAAVSF 148
++ N VD ++R + +
Sbjct: 116 NDRFNNYVDEMSRKSVEEY 134
>gi|93210766|gb|ABF00734.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 822
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKKGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|93210736|gb|ABF00707.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 591 YVDGAASRETKIGKAGYVTDKGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 693 GGNEQVDKLVSNGIRK 708
>gi|37682851|gb|AAQ98429.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E TTN R EL A AL +V
Sbjct: 596 YVDGAASRETKLGKAGY---ITDRGRQKVVSLTE--TTNQRTELHAIHLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|51950721|gb|AAU14913.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVSITETTNQKTELQAIHLALQ-----DSGAEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAKPDKSESEIVNQIIEELIKKDKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|290466009|gb|ADD25352.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL V +
Sbjct: 604 YVDGAANRETRLGKAGFVTDKGRQKVVS---IADTTNQKTELQAILMALQDSGQ--DVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 659 VTDSQYAMGII-------------HSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|130598|sp|P19028|POL_FIVSD RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|323959|gb|AAA43076.1| pol polyprotein (NH2-terminus uncertain) [Feline immunodeficiency
virus]
Length = 1124
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK E E +N + E+ A + AL A ++
Sbjct: 599 YIDGG--RKLGKAAKAAYWTDTGK---WQVMELEGSNQKAEIQALLLALKAGPEEMNII- 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ SQ E + + + W+ GH G
Sbjct: 653 -TDSQYMINILSQQ--------------PDKMEGIWQEVLEELEKKTAIFIDWVPGHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 PGNEEVDKL 706
>gi|212383140|gb|ACJ25866.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKIGKAGYVTDRGRQKIVTITETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|86277548|gb|ABC88274.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRESKKGKAGYV---TDKGRQKAVSLTETTNQKAELQAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|288558549|dbj|BAI68331.1| polyprotein [Human immunodeficiency virus 1]
Length = 323
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + ETTN + EL A AL +V +
Sbjct: 187 YVDGAASRETKIGKAGYVTDRGRQKVVS---LPETTNQKTELHAIHLALQDSG--SEVNI 241
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 242 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLSWVPAHKGI 288
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 289 GGNEQVDKLVSSGIRK 304
>gi|212382713|gb|ACJ25668.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYITDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|71726043|gb|AAZ39171.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|314907100|gb|ADT61975.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRKKVVSLPETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|3252948|gb|AAD12097.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRETKKGKAGYV-TDRGRQKIVSLTETTNQKTELQAICL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|302594728|gb|ADL59552.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 1 YVDGASNRDTKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|110815938|sp|Q9QBY3|POL_HV196 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1430
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G + +G++K++S E ++ + +V +
Sbjct: 1023 YVDGAAHRETKK-GRAGYVTDRGRQKVVSITETTNQKAELQAICL----ALQDSGSEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1078 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKERIYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1125 GGNEQVDKLVSAGIRK 1140
>gi|261331928|emb|CBH14921.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 743
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 10 HAYTDGA-CSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G LL G E + + A++
Sbjct: 103 ELWTDGSVSLGE--KSGAAALLYKNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKW 160
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ S + + + + + ++ L ++ G
Sbjct: 161 LPAYRSTPSRLSILSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKMRIRLQFVFG 220
Query: 128 HAGNQENEKVDRIARNAAV 146
H G + NE D +A+ AA
Sbjct: 221 HCGVKRNEVCDDMAKKAAD 239
>gi|58220951|gb|AAW68134.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKIGKAGYVTDRGRQKIVTITETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|17046869|gb|AAL34874.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 592 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|255519543|dbj|BAH90760.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAITLTETTNQKAELAAVQLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|224076743|ref|XP_002304990.1| predicted protein [Populus trichocarpa]
gi|222847954|gb|EEE85501.1| predicted protein [Populus trichocarpa]
Length = 202
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 18/143 (12%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALKYPCKV 69
DG+C G G G + R E ++ E A V
Sbjct: 48 DGSCKGTAGKASIGGVFRNHEAEFLLGYAEPIGGTTSTIAELAALRRGLELVLENGWSNV 107
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L DS + + + + + + +L + H
Sbjct: 108 WLEGDSKSLVDIIVKRKQVRCKEAQRQVSHINLIMPELQNC--------------VVTHV 153
Query: 130 GNQENEKVDRIARNAAVSFKNKI 152
+ N D++AR K KI
Sbjct: 154 FREGNRAADKLARIGHQLQKPKI 176
>gi|38491851|gb|AAR22223.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYV-------------LGIIQAKPDKSESEIVNHIIEELIKKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|238060393|ref|ZP_04605102.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
gi|237882204|gb|EEP71032.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
Length = 410
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTAL 63
R V DG GNPGP G+G ++R + + S TNN E I L A
Sbjct: 4 RTVVVEADGGSRGNPGPAGYGAVVRDQASGEVLAERSEAIGTATNNVAEYRGLIAGLEAA 63
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V + S+ + + W+ V+ A V
Sbjct: 64 AELGAV------EVDARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAALVDRFAA--VRFQ 115
Query: 124 WIKGHAGNQENEK 136
WI + N
Sbjct: 116 WIP----RERNRH 124
>gi|88602713|ref|YP_502891.1| ribonuclease H [Methanospirillum hungatei JF-1]
gi|88188175|gb|ABD41172.1| ribonuclease H [Methanospirillum hungatei JF-1]
Length = 134
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTA--LKYP 66
YTDGA GNPGP ++ + +I +TTNN E A IKALT +
Sbjct: 4 IYTDGASRGNPGPAACSYQIKDENGNRIADYVCFLGQTTNNVAEYTAIIKALTRAAEETK 63
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ +Y+DS V + + + + + D+ V E + D+
Sbjct: 64 EAIHVYSDSQLVIRQITGVYRINKPHLKALYDEVMVLASRFSHCIWEYVPRTHPDI---- 119
Query: 127 GHAGNQENEKVDR 139
G+ NE++DR
Sbjct: 120 GYCDRLCNEELDR 132
>gi|283444802|gb|ADB20280.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|326370842|gb|ADZ56598.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|290466036|gb|ADD25375.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL + +V +
Sbjct: 603 YVDGAANRETKLGKAGFVTDRGRQKVVS---IXDTTNQKAELQAILMALQESEK--EVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + +V L W+ H G
Sbjct: 658 VTDSQYAMGII-------------HAQPDKSESEVVSQIIEELIKKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|17046733|gb|AAL34752.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +GK+K+IS E ++ + +V +
Sbjct: 598 YVDGAANRET-KMGRAGYVTDRGKQKVISLTETTNQKTELQAIQL----ALQDSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|74273347|gb|ABA01343.1| pol protein [Human immunodeficiency virus 1]
gi|74273356|gb|ABA01351.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGASNRETKVGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRKI 717
>gi|328834013|gb|AEB52470.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E TTN + EL A + L +V +
Sbjct: 593 YVDGAANRET-KMGKAGYVTDRGRQKIVSLSE--TTNQKAELHAILIGLP--ASRSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSKGIRK 710
>gi|224132898|ref|XP_002197958.1| PREDICTED: similar to gag-pro-pol polyprotein [Taeniopygia guttata]
Length = 1414
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 9/148 (6%)
Query: 10 HAYTDGACSGNPGP--GGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ DG+ G G+ ++ + SG + + + + A+
Sbjct: 813 VLFLDGSSRIVEGKRLSGYAIVKWEKGEFKIRESGPLSASWSAQACELYALWKALVSLKG 872
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWI 125
+YTDS Y + K W++ G+ S K + + +L + + +K+ + I
Sbjct: 873 KDGTIYTDSCYAFGAVHTFGKIWEERGFINSQGKELVHQELIRRVLGALKMPNKIAVVHI 932
Query: 126 KGHA-----GNQENEKVDRIARNAAVSF 148
KGH + N D A+ A ++
Sbjct: 933 KGHQQGTSYQVRGNNAADTEAKRVAGNY 960
>gi|242825810|ref|XP_002488515.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712333|gb|EED11759.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 488
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 13/150 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAA-----IKA 59
Y+D G+ G ++ + + ++S G + + EL+ +
Sbjct: 163 VVYSD--ALGHDNHLGAAAVVLDRNQNIVVSRKMAIGPMAHWSIHIAELIGVYYAISLAL 220
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ + S+ + +N TS ++ ++ I+ +++
Sbjct: 221 KIFHQNGQSTRPGAGEAITILSDSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGI-P 279
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ L WI GH + N+ D +A+ A K
Sbjct: 280 LRLQWIPGHCDDPGNDAADCLAKAAVGPTK 309
>gi|67866559|gb|AAY82292.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + TTN + EL A + AL +V +
Sbjct: 603 YVDGAANKETKLGKAGFVTDRGRQKVVS---LENTTNQKTELQAILMALQDXGQ--EVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 658 VTDSQYAMGII-------------HSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|313892014|ref|ZP_07825615.1| ribonuclease HI [Dialister microaerophilus UPII 345-E]
gi|329121033|ref|ZP_08249664.1| ribonuclease HI [Dialister micraerophilus DSM 19965]
gi|313119657|gb|EFR42848.1| ribonuclease HI [Dialister microaerophilus UPII 345-E]
gi|327471195|gb|EGF16649.1| ribonuclease HI [Dialister micraerophilus DSM 19965]
Length = 201
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 2 DSKHLREVHAYTDGACSG-NPGPGGWGVLLRYKGKEKIISGG-----EKETTNNRMELMA 55
+ + + AY DG+ P +GV+L GK + S E N E+
Sbjct: 59 EESNENNIIAYVDGSYIPSKPECFSFGVVLIENGKIEKYSKKIINKEEAMMRNVAGEVYG 118
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
A+ A+ +L Y + W+ N T K
Sbjct: 119 AMYAINLCLERKGKVLNLYYDYTGIEKWCTGE-WKANKILTKKLKLFYETIK-------- 169
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + ++ H G + N+ D +A++A
Sbjct: 170 DKIDIRFHKVESHTGVKYNDLADSLAKDA 198
>gi|59003519|gb|AAW83529.1| pol protein [Human immunodeficiency virus 1]
gi|212383155|gb|ACJ25873.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVITLTETTNQKTELQAIQIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + E + +V L W+ H G
Sbjct: 647 VTDSQYAIGIIQAQPDSSE-------------SELVNQIIEELIKKERVHLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|11385955|gb|AAG35041.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 540 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|130641|sp|P26810|POL_MLVF5 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
Length = 1204
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 647 YTDGSSFLQEGQRRAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAAGKKL 703
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 704 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 763
Query: 129 A-GN----QENEKVDRIARNAAV 146
GN + N D+ AR A
Sbjct: 764 QKGNHAEARGNRMADQAAREVAT 786
>gi|319801100|emb|CBW48594.2| Pol protein [SIVcpz Ptt-09Cam155]
Length = 1002
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + TTN + EL A AL + V +
Sbjct: 595 YVDGAANRDSKKGRAGYVTDRGRQKXIN---LENTTNQQAELKALHLALQDSGHQ--VNV 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + E + KV L W+ H G
Sbjct: 650 VTDSQYVLGIIQSQPDYSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|74273381|gb|ABA01372.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGASNRETKVGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRKI 717
>gi|2351212|dbj|BAA22064.1| gag-pol polyprotein (precursor protein) [Friend murine leukemia
virus]
Length = 1738
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 1181 YTDGSSFLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKL 1237
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ K +KN + + ++A + ++ + GH
Sbjct: 1238 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKEEILALLKALSLPKRLSIIHCPGH 1297
Query: 129 A-GNQ----ENEKVDRIARNAAV 146
GN+ N D+ AR A
Sbjct: 1298 QKGNRAEARGNRMADQAAREVAT 1320
>gi|295413503|gb|ADG07978.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQIALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|93210843|gb|ABF00803.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + I + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQRVISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|3746069|gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 35/136 (25%), Gaps = 11/136 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGA GN G G +R E N A + L Y
Sbjct: 1071 VKITTDGASRGNHGLAAAGGAIRNGQGE-----WLGGFALNIGSCAAPLAELWGAYYGLL 1125
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ V + + ++ + L F +V H
Sbjct: 1126 IAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRV------SH 1179
Query: 129 AGNQENEKVDRIARNA 144
+ N D +A A
Sbjct: 1180 VYREANRLADGLANYA 1195
>gi|73913795|gb|AAZ91776.1| pol protein [Human immunodeficiency virus 1]
gi|212383350|gb|ACJ25953.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + L V Y DGA + G G + ++ + + + A++
Sbjct: 580 LEKEPLEGVETFYVDGAANRETKIGKAGYVTDRGRQKVVTITETTNQKSELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + K
Sbjct: 639 ----DSGSEVNIITDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEK 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|326416856|gb|ADZ73281.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E TTN + EL A + AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE--TTNQKTELHAILLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416826|gb|ADZ73266.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E TTN + EL A + AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE--TTNQKTELHAILLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|134140582|gb|ABO61054.1| pol protein [Simian immunodeficiency virus]
Length = 1013
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + + + + TTN + EL A + ALT +
Sbjct: 601 YVDGAANRNSKLGRAGY-----VTDRGQEKAIDLENTTNQKAELQAILMALTDGPPKMNI 655
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS Y G T+ +T ++ + + + + L W+ H
Sbjct: 656 --VTDSQYA-------------LGIITAAPETSESPLVEKIIQQLLTKEAIYLSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD +
Sbjct: 701 GIGGNQEVDHLVSKGIRQ 718
>gi|85700515|gb|ABC74632.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E ++ + +V +
Sbjct: 599 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|256010865|gb|ACU55289.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTDRGRQKVVTINDTTNQKTELQAIQLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|255984916|gb|ACU46530.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNXGXQKVVSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEZLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRKI 159
>gi|238632989|gb|ACR51090.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634313|gb|ACR52171.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|209489240|gb|ACI49022.1| hypothetical protein Cbre_JD04.007 [Caenorhabditis brenneri]
Length = 180
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 10 HAYTDGACSGNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
+TDGACS N G GWGV ++ TNNR E +A
Sbjct: 114 VVFTDGACSSNGGKKAKAGWGVFWGDDNEDNEYGPVYGAATNNRGEYIAV 163
>gi|308503274|ref|XP_003113821.1| CRE-RNH-1.1 protein [Caenorhabditis remanei]
gi|308263780|gb|EFP07733.1| CRE-RNH-1.1 protein [Caenorhabditis remanei]
Length = 551
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 8/141 (5%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGK-EKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + G G+ + + + E NN E +A AL
Sbjct: 376 TLIMYTDASYLKREHRSGIGIFVAPGHELNRSQRIREPIQDNNFAEFIAVKTALENALKN 435
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + + S ++ + V+ +
Sbjct: 436 DTYRNQK-----VVIRTDCLGVIEAMKGTQSTAYPSVKSEVIK--LANQFPRGVEFQHVY 488
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H G+ NE D A A+
Sbjct: 489 AHEGDPGNELADMFAGIASEK 509
>gi|238632974|gb|ACR51080.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIKKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238632971|gb|ACR51078.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|16118395|gb|AAL12758.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A AL +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAIHLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|270064180|gb|ACZ60060.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + ETTN + EL A AL +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDKGRQKAVTLTETTNQKAELQAIYLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|238634299|gb|ACR52162.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634243|gb|ACR52117.1| pol protein [Human immunodeficiency virus 1]
gi|238634290|gb|ACR52156.1| pol protein [Human immunodeficiency virus 1]
gi|238634304|gb|ACR52165.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238632986|gb|ACR51088.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|222428379|gb|ACM50033.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLGDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QATPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|93210973|gb|ABF00920.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +E + + A++ +V +
Sbjct: 600 YVDGAANRKTKMGKAGYVTDRGRQEIVPLTETTNQKTELQAIHLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSKGIRK 717
>gi|238634310|gb|ACR52169.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634296|gb|ACR52160.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634240|gb|ACR52115.1| pol protein [Human immunodeficiency virus 1]
gi|238634293|gb|ACR52158.1| pol protein [Human immunodeficiency virus 1]
gi|238634307|gb|ACR52167.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238632983|gb|ACR51086.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238632977|gb|ACR51082.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|212382730|gb|ACJ25675.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKIVTLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|238634513|gb|ACR52343.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634246|gb|ACR52119.1| pol protein [Human immunodeficiency virus 1]
gi|238634444|gb|ACR52284.1| pol protein [Human immunodeficiency virus 1]
gi|238634510|gb|ACR52341.1| pol protein [Human immunodeficiency virus 1]
gi|238634516|gb|ACR52345.1| pol protein [Human immunodeficiency virus 1]
gi|238635486|gb|ACR52735.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|212382766|gb|ACJ25692.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKRGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGPEVNV 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|15787960|gb|AAL07550.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|74273373|gb|ABA01365.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGASNRETKVGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRKI 717
>gi|168208527|gb|ACA21828.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIMKDKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|164521195|gb|ABY60459.1| Gag-Pol-Nef protein [Expression vector MVA--89.6P-SIVGPN]
Length = 1405
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G+ + +GK+K+ ++TTN + EL A + ALT +
Sbjct: 1180 YTDGSCNKQSKEGKAGY---ITDRGKDKV--KVLEQTTNQQAELEAFLMALTDSGPKANI 1234
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS YV + + + + + E + ++ + W+ H
Sbjct: 1235 IV--DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHK 1279
Query: 130 GNQENEKVDRIARNAAVS-FKNKI 152
G N+++D + + +I
Sbjct: 1280 GIGGNQEIDHLVSQGIRQVLRKRI 1303
>gi|7335662|gb|AAA76841.2| pol [Human immunodeficiency virus 2]
Length = 1073
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + ++T+N + EL A AL KV +
Sbjct: 661 YTDGSCNRQSKEGKAGYVTDRGRDRV---RVLEQTSNQQAELEAFAMALADSGP--KVNI 715
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + + + V + W+ H G
Sbjct: 716 IVDSQYVMGIVAGQPTESE-------------NRIVNQIIEDMIKKEAVYVAWVPAHKGI 762
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 763 GGNQEVDHLVSQGIRQ 778
>gi|86753503|gb|ABD14936.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 598 YVDGAANRET-KMGKAGYITDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + ++ ++ +V L W+ H G
Sbjct: 653 VTDSQYALGIIQGHPDKSESELVNKIIEQLIEKE-------------RVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|255519533|dbj|BAH90751.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAITLTETTNQKAELAAVQLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|238734322|gb|ACR55540.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETRIGKAGYVTDRGKQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQGQPDKSE-------------SDLVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|238632980|gb|ACR51084.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|474936|emb|CAA55543.1| reverse transcriptase [Murine leukemia virus]
Length = 397
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 152 YTDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 208
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
LYTDS Y + +++ G TS+ K +KN D + ++A ++ + GH
Sbjct: 209 NLYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGH 268
Query: 129 A-----GNQENEKVDRIARNAAV 146
+ N D+ AR A
Sbjct: 269 QKGKQRTARGNRMADQAAREVAT 291
>gi|212544590|ref|XP_002152449.1| ribonuclease H1, putative [Penicillium marneffei ATCC 18224]
gi|210065418|gb|EEA19512.1| ribonuclease H1, putative [Penicillium marneffei ATCC 18224]
Length = 209
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 55/170 (32%), Gaps = 24/170 (14%)
Query: 2 DSKHLR-EVHAYTDGACSGNPG-----------PGGWGVL-LRYKGKEKIISGGEKETTN 48
S ++ + Y DG C N WG +R + + E T
Sbjct: 30 TSSNMVYTMKIYVDGGCRRNGRSDAVAAAAACIKNKWGKYRIRARYITDDPTNQRAEITA 89
Query: 49 NRMELMAAIKALTAL---KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
M L A+ V +++DS Y WI KW +NGW S V N
Sbjct: 90 IIMALELALAKYKNDLDEMPLMDVEIFSDSRYAVNCMKTWIYKWCRNGWMNSAGNPVANR 149
Query: 106 DLWMK----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
DL + + V+ WI ENE D A + + +
Sbjct: 150 DLIEEASDLDDQVKEIGTVEYTWIP----RSENEVADGACNRAMDALEKE 195
>gi|157274033|gb|ABV28302.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKIVPLTETTNQKAELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGVIQAQPDRSE-------------SEIVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|149209009|ref|XP_001521879.1| hypothetical protein MG11049.4 [Magnaporthe oryzae 70-15]
Length = 294
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 16/146 (10%)
Query: 6 LREVHAYTDGA-CSGNPGP---GGWGVL---LRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ YTDG+ N GW L + I+ + + ++
Sbjct: 4 PDNIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAAGSAFITPESHVFDAEAIGALKGLQ 63
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + ++ + DS+ V G + Q + + +
Sbjct: 64 AAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAF---------LEFHNLVDLLRKQGT 114
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 115 EVRVRWCPGHQGIPGNDRADELAKAG 140
>gi|109689071|emb|CAI64012.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 659
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|109689075|emb|CAI64014.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 659
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|109689073|emb|CAI64013.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 659
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|242276486|gb|ACS91467.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRDTKEGKAGYVTDRGRQKAVFLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIDQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|17046703|gb|AAL34725.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 592 YVDGAANRET-KAGKAGYVTDRGRQKVISITETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|4539034|emb|CAB39916.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKKGKAGYVTDRGRQKVVFLTETTNQKTELQAIHLALQ-----DSGSEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIQKDKVYLTWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1128 GGNEQVDKLVSSGIRK 1143
>gi|71725973|gb|AAZ39108.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|16118302|gb|AAL12677.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDKGRQKVVS---LTETTNQKAELHAI--QLALQDSGSQVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|154277070|ref|XP_001539380.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414453|gb|EDN09818.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 321
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 104 NIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + E QH + L W H + NE+ DR+A+ A S
Sbjct: 173 SNWAYNRCHELLRQHNIGLKWAPEHMKIEGNEEADRLAKQAVSS 216
>gi|5668912|gb|AAD46066.1|AF076474_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 595 YVDGAANRETKQGKAGY---VTDRGRQKIVSLTE--TTNQRTELQAIHLALQDSGP--EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + ++KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIQKNKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++
Sbjct: 695 GIGGNEKVDKLVSAGIRK 712
>gi|302594690|gb|ADL59533.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E T N+ + AI +V +
Sbjct: 1 YVDGAANRET-KAGKAGYVTDRGRQKVVSLAE---TPNQKTELHAIHLALQDSG-SEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + +K + +KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSESDLVNLIIEKLIGK-------------NKVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRKI 119
>gi|37682411|gb|AAQ98110.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E ++ + +V +
Sbjct: 599 YVDGAANRET-KMGRAGYVTDKGRQKIVSLTETTNQKAELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKERIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|2343271|gb|AAC59311.1| pol polyprotein [Walleye epidermal hyperplasia virus 2]
Length = 1246
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMAAIKALTALKY 65
++ +TDG+ S G GG G ++ Y T+ + + A+ +
Sbjct: 629 DLILFTDGSYSK--GEGG-GAVVEYVPSTDTFKTVSACSGFTSAQTAELCALTSACLHAK 685
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYW 124
V +YTDS Y + WQ G+ TS +KN + +E ++ +
Sbjct: 686 SKSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHNEIQSLLEAVMMPEQISVMK 745
Query: 125 IKGHA 129
H
Sbjct: 746 CPAHT 750
>gi|4809000|gb|AAD30054.1| pol polyprotein [Walleye epidermal hyperplasia virus 2]
Length = 1246
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG--EKETTNNRMELMAAIKALTALKY 65
++ +TDG+ S G GG G ++ Y T+ + + A+ +
Sbjct: 629 DLILFTDGSYSK--GEGG-GAVVEYVPSTDTFKTVSACSGFTSAQTAELCALTSACLHAK 685
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYW 124
V +YTDS Y + WQ G+ TS +KN + +E ++ +
Sbjct: 686 SKSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHNEIQSLLEAVMMPEQISVMK 745
Query: 125 IKGHA 129
H
Sbjct: 746 CPAHT 750
>gi|87116022|gb|ABD19562.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKIVSLTETTNQRTELQAIKL----ALEDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|301310361|ref|ZP_07216300.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300831935|gb|EFK62566.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 165
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 8/148 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TD + + + GG+ + + SG KET++ + + A+ + +
Sbjct: 3 VTINTDASFNHHHKVGGYAFWITSELGRIRQSGTLKETSDAQDAELKALANAVYVLLNSE 62
Query: 69 VLL--YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ K ++ D+ + + ++ +K
Sbjct: 63 FNNGSIEHIYVNSDCKMMFPKISIKSTSVPGKYIAETLNDILRQNTDGCIYGRISFRHVK 122
Query: 127 GHAGN------QENEKVDRIARNAAVSF 148
H N N+ D A+ A S
Sbjct: 123 AHTNNLTKSRSWVNDWCDNEAKKAMRSA 150
>gi|242825393|ref|XP_002488431.1| hypothetical protein TSTA_108610 [Talaromyces stipitatus ATCC
10500]
gi|218712249|gb|EED11675.1| hypothetical protein TSTA_108610 [Talaromyces stipitatus ATCC
10500]
Length = 122
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH+G + NE+ D+ A+ AA
Sbjct: 15 VTIQWVPGHSGIEGNEQADQAAKRAASK 42
>gi|152982034|ref|YP_001354552.1| RNase HI-like protein [Janthinobacterium sp. Marseille]
gi|151282111|gb|ABR90521.1| RNase HI-like protein [Janthinobacterium sp. Marseille]
Length = 210
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKA 59
+ + A+ DG+C NPG G G LL+ IS ++ E +A I
Sbjct: 66 LPQRDPTAWLAWFDGSCHPNPGKMGIGGLLQSPQGIHTEISFAAGLGDSSEAEYIALISV 125
Query: 60 LTA--LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
L A ++ +Y DS V + + S + +
Sbjct: 126 LEAALTAGVGQLHIYGDSRVVINDVQLEVGGAAILTTQRSRAQALLARLP---------- 175
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V L WI ++N + D +++ A
Sbjct: 176 -QVTLGWIP----RKKNARADALSQQAIR 199
>gi|11385967|gb|AAG35047.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 395 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRKI 513
>gi|306416460|gb|ADM87077.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G ++ +K++S E T N+ + AI +V +
Sbjct: 441 YVDGAASRETKLGKAGYVIDRG-SQKVVSLTE---TTNQKTELHAIHLAFQDSG-SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|238634135|gb|ACR52033.1| pol protein [Human immunodeficiency virus 1]
gi|238634170|gb|ACR52064.1| pol protein [Human immunodeficiency virus 1]
gi|238635541|gb|ACR52781.1| pol protein [Human immunodeficiency virus 1]
gi|238635547|gb|ACR52786.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|148745887|emb|CAK49332.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVSLNETTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|15281500|gb|AAK94282.1|AF361879_2 pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKIGKAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYT-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|281191167|gb|ADA57091.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 602 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQSQPDKSESDIVNQIIEQLIKKERVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIRK 719
>gi|256011016|gb|ACU55364.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKIGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|4377544|emb|CAA40318.1| POL [Feline immunodeficiency virus]
Length = 1124
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK K++ E E +N + E+ A + AL A ++
Sbjct: 599 YIDGG--RKLGKAAKAAYWTDTGKWKVM---ELEGSNQKAEIQALLLALKAGSEEMNII- 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV Q + E + + + W+ GH G
Sbjct: 653 -TDSQYVINIILQQ--------------PDMMEGIWQEVLEELEKKTAIFIDWVPGHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 PGNEEVDKL 706
>gi|82571360|gb|ABB84122.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKKGKAGYVTDRGRQKIVPLTETTNQKTELQAVQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 654 VTDSQYALGIIQGQPDKSE-------------SELVNQIIEQLIQKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|45360177|gb|AAS59212.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 540 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSAVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALXII-------------QAQPDKSGSEVVHQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|242821777|ref|XP_002487749.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712670|gb|EED12095.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 192
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 22/141 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S A AL
Sbjct: 23 DIVIFSDGSRLADGCVGG-GYIGLQAHHQFLRSSLSYRHGKEVFNAE----AEAALAGAQ 77
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V++Y + + N + + + W+ G
Sbjct: 78 AVIVYPTAQFATNL-----WICLDNLEPLRKRLPHIKSG------------SIQIRWVPG 120
Query: 128 HAGNQENEKVDRIARNAAVSF 148
HA EN+ D A+ A S
Sbjct: 121 HAKIPENKAADLAAKEGAASI 141
>gi|3252958|gb|AAD12106.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRDTKIGKAGYV-TDRGRQKIVSLTETTNQKTELQAICL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|13891916|gb|AAG50337.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|11385969|gb|AAG35048.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + ETTN + EL A L +V +
Sbjct: 395 YVDGASNRETKKGKAGYVTDRGRQR---AVSLTETTNQKAELHAI--QLALQDSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRK 512
>gi|302698281|ref|XP_003038819.1| RnaseH domain, transposon factor [Schizophyllum commune H4-8]
gi|300112516|gb|EFJ03917.1| RnaseH domain, transposon factor [Schizophyllum commune H4-8]
Length = 272
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 50 RMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
R L AA+ + + L+ D++ + K Q +
Sbjct: 5 RWGLQAALHFVETHPNTKHIHLFADNTSAISAIFDPLPKSGQMHCI-------EFHKQAC 57
Query: 110 KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+F++ +++ W+ GH + N++ D +A+ A
Sbjct: 58 EFLDGGPTRTLNIAWVPGHQDVRGNDEADELAKAAVE 94
>gi|17046583|gb|AAL34617.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKKGKAGYVTDRGRQKCVTLTETTNQKTELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|16118375|gb|AAL12740.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--KLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|27227852|dbj|BAC45025.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELRAICIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212382579|gb|ACJ25610.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|319429306|gb|ADV56926.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDKGRQRXVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|57869645|gb|AAW57687.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|89116507|gb|ABD61769.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQRVITLSETTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|16118329|gb|AAL12700.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 601 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRKI 719
>gi|313667035|gb|ADR72972.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKVVTLTETTNQKTELQAICIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|282598042|gb|ADA83286.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 593 YVDGASNRETKIGKAGYVTDRGRQKVVHLTETTNQKAELQAIHLALQ-----DSGAKVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + E + KV L W+ H G
Sbjct: 648 VTDSQYTLGIIQAQPDRSESEIVNN-------------IIEELIKKDKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|294892079|ref|XP_002773884.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
gi|239879088|gb|EER05700.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
Length = 1178
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 9 VHAYTDGACSGNPGPGG------WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
V YTDG+ +P G ++ ++ KE T + E A I AL A
Sbjct: 891 VRVYTDGS-RKDPDEAGTCSVGAAAIIYKHSNKEAHRFRLPPFATIYQAEQYAIIGALEA 949
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
LK +V + + S + G S++ + ++ +
Sbjct: 950 LKKDKEVADGSRVLFFSDCRSVLQRILGGGGDHWSNRILEIASSMRVEGITCC------F 1003
Query: 123 YWIKGHAGN---QENEKVDRIARNA 144
WI H + NE+ D A A
Sbjct: 1004 IWIPSHQQDGTIPGNEEADLEANRA 1028
>gi|17046643|gb|AAL34671.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKKGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ-----DSESEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIGELIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|238635521|gb|ACR52765.1| pol protein [Human immunodeficiency virus 1]
gi|238635532|gb|ACR52774.1| pol protein [Human immunodeficiency virus 1]
gi|238635565|gb|ACR52801.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDKSESELVDQIIEKLINKE-------------KVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634441|gb|ACR52282.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDKSESELVDQIIEKLINKE-------------KVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|213495596|gb|ACJ49062.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37682560|gb|AAQ98244.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKRGKAGYVTDRGRQKIISLAETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|17046839|gb|AAL34847.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSKGIRK 715
>gi|256011368|gb|ACU55540.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + KGK+K+++ E T N+ + AI+ +V +
Sbjct: 597 YVDGAASRETKIGKAG-YITDKGKQKVVTLNE---TTNQKAELEAIRLALQDSEL-EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSXIIEELIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|239826755|ref|YP_002949379.1| hypothetical protein GWCH70_1261 [Geobacillus sp. WCH70]
gi|239807048|gb|ACS24113.1| conserved hypothetical protein [Geobacillus sp. WCH70]
Length = 218
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V AY DG GG GV++ YK + + A A
Sbjct: 70 DVIAYFDGGFDNETLQGGVGVVIYYKQNNEQYRLRANRQLDELKSNNEAEYAAFWFLMQM 129
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
L V + Q +G + + E + + +
Sbjct: 130 LEELGVHHLPVIFRGDSHVVLKQLSGDWP--CFEDDHNAWLDRIEEKINELGIQPIYEP- 186
Query: 128 HAGNQENEKVDRIARNAAV 146
++N++ D++AR A
Sbjct: 187 -ISRKQNKEADQLARQAME 204
>gi|145602822|ref|XP_362807.2| hypothetical protein MGG_11049 [Magnaporthe oryzae 70-15]
gi|145011202|gb|EDJ95858.1| hypothetical protein MGG_11049 [Magnaporthe oryzae 70-15]
Length = 1312
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 32/144 (22%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+D ++ YTDG+ + E R L A +
Sbjct: 1004 LDMVSPDDIVVYTDGS----------------EKHENNCVQIGYGWAAFRAGLEFAAGSA 1047
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + I + + + +DL + + +V
Sbjct: 1048 SITPESHVFDA------------EAIGALKGLQAAAKAQPGARILDLCGQHLGT----EV 1091
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ W GH G N++ D +A+
Sbjct: 1092 RVRWCPGHQGIPGNDRADELAKAG 1115
>gi|14582845|gb|AAK69683.1|AF349681_2 pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + K ++TTN + EL A + AL KV L
Sbjct: 614 YVDGAANRNSKLGKAGYV---TDRGKEKVKELEDTTNQKAELEAVLLALKDSGK--KVNL 668
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + +V L W+ H G
Sbjct: 669 VTDSQYVFGILAGSPDTSE-------------SPLVQQIIEQLIGKEEVYLSWVPAHKGI 715
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 716 GGNEQVDKLVSNGIRQ 731
>gi|315272217|gb|ADU02672.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG G + GK K ++ AI+
Sbjct: 609 ITIYTDG---GKQNEEEVTAYVTSDGKTKQKR---LRPITHQTAEKIAIQMALEDTEETL 662
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
V + TDS Y K ++ + + W + V W+ GH
Sbjct: 663 VNIVTDSYYCWKNITEGLGLE------------GPDSPWWPIIQNIRTKEMVYFTWVPGH 710
Query: 129 AGNQENEKVDR 139
G N+ D
Sbjct: 711 KGIYGNQLTDE 721
>gi|319892433|ref|YP_004149308.1| Ribonuclease HI [Staphylococcus pseudintermedius HKU10-03]
gi|317162129|gb|ADV05672.1| Ribonuclease HI [Staphylococcus pseudintermedius HKU10-03]
Length = 132
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 17/137 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A GNPG GV++ + + + N+ E A + AL +
Sbjct: 3 KIYFDAATKGNPGLSACGVVIVTENERYTFTKLLDALDNHSAEWEALLFALEQAQTLAVA 62
Query: 70 L--LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++TDS + ++ K K L H +L ++K
Sbjct: 63 NALVFTDSQLIEDAVNRE-------FVKNGRFKPYLERYLQ-------MTHDFELAFVKW 108
Query: 128 HAGNQENEKVDRIARNA 144
+N+ +++A++A
Sbjct: 109 -VPRAQNKAANQLAQDA 124
>gi|331249470|ref|XP_003337352.1| hypothetical protein PGTG_19051 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316342|gb|EFP92933.1| hypothetical protein PGTG_19051 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 890
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
S++ T I + + + L W H G ENEKVD++A+ A
Sbjct: 712 KSNQSTFIQIFDKLNILITDFHFSISLLWCPAHVGIPENEKVDQLAKEA 760
>gi|331216904|ref|XP_003321131.1| hypothetical protein PGTG_02173 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300121|gb|EFP76712.1| hypothetical protein PGTG_02173 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 672
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
S++ T I + + + L W H G ENEKVD++A+ A
Sbjct: 494 KSNQSTFIQIFDKLNILITDFHFSISLLWCPAHVGIPENEKVDQLAKEA 542
>gi|55735986|gb|AAV59715.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++K++S + ++ + +V +
Sbjct: 596 YVDGASSRET-KMGKAGYVTDRGRQKVVSLMDTTNQKTELQAIQL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|38892620|gb|AAR27628.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|242797645|ref|XP_002483003.1| hypothetical protein TSTA_008940 [Talaromyces stipitatus ATCC
10500]
gi|218716348|gb|EED15769.1| hypothetical protein TSTA_008940 [Talaromyces stipitatus ATCC
10500]
Length = 378
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ + GG G + + + S + A A
Sbjct: 130 DIIIFSDGSRLVDGRAGG-GYIGFQAHNQFLRSSLLYGHGKEVFDAEAEAALAGAQAAIA 188
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI------DLWMKFVEASAQHKVD 121
++ + + + S ++ ++ + + + V
Sbjct: 189 YPTAQFATNLWICLDNLEVATRLLSPSIRSSQEAFESFYTLAAGWPLYERLPHTKSGSVQ 248
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+ W+ H +NE D A+ A S
Sbjct: 249 IRWVPRHTKISKNEAADSAAKEGAASM 275
>gi|187371935|gb|ACD02831.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VDR+ N
Sbjct: 698 GGNEQVDRLVSNGIRKI 714
>gi|67553023|gb|AAY68617.1| pol protein [Human immunodeficiency virus 1]
gi|212383316|gb|ACJ25941.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKRGKAGYVTDRGRQKIVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|58220881|gb|AAW68071.1| pol protein [Human immunodeficiency virus 1]
Length = 775
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKKGKAGYVTDKGRQKIVSLSETTNQKTELQAIQLALQ-----DSGPEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 706 GGNEQVDKLVSNGIRK 721
>gi|13891900|gb|AAG50329.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSGLQVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|281191157|gb|ADA57082.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 708 GGNEQVDKLVSNGIRK 723
>gi|257869397|ref|ZP_05649050.1| RNase H [Enterococcus gallinarum EG2]
gi|257803561|gb|EEV32383.1| RNase H [Enterococcus gallinarum EG2]
Length = 137
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA----LK 64
+ Y D + GNPGP G G+L+ + + + TN++ E A AL
Sbjct: 2 LKVYLDASTKGNPGPSGGGLLIVGEDLHEQHAFVLPTLTNHQAEFAAMHHALEFLLTKEW 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++LYTDS V + + L + + W
Sbjct: 62 QDQTIMLYTDSKVVAQTIDK-----------NDTNNPDFRKYLEEIQELLPYFTLLIVQW 110
Query: 125 IKGHAGNQENEKVDRIARNA---AVSFKNK 151
I +N+ D +AR A+ +++
Sbjct: 111 IP----ESQNKGADHLARQGLAKALKLQDR 136
>gi|256252487|dbj|BAH97605.1| Pol [Human immunodeficiency virus 1]
gi|256252497|dbj|BAH97614.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K++S E ++ + +V +
Sbjct: 595 YVDGAANRETKIGKAGYV-TDRGRQKVVSITETTNQKTELQAINL----ALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238734285|gb|ACR55508.1| pol protein [Human immunodeficiency virus 1]
Length = 1018
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + +G++K++S + ++ + +V
Sbjct: 611 YVDGAANRETNLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAIQL----ALQDSGSEV 663
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 664 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 710
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 711 GIGGNEQVDKLVSAGIRK 728
>gi|192335045|gb|ACF04033.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 601 YVDGAAHRETKAGKAGYVTDRGRQKVVSFMDTTNQKTELQAIYLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEELIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|93210706|gb|ABF00680.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 605 YVDGAANRETKIGKAGYVTDRGRQKIVHLSETTNQKTELKAIHLALQ-----DSGSEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 707 GGNEQVDKLVSSGIRK 722
>gi|38892610|gb|AAR27619.1| pol protein [Human immunodeficiency virus 1]
gi|212382570|gb|ACJ25606.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVPLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRKI 710
>gi|71726023|gb|AAZ39153.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|1086126|pir||S46347 pol polyprotein - simian immunodeficiency virus SIVagm (isolate
SAB-1)
gi|466231|gb|AAA21505.1| pol protein [Simian immunodeficiency virus - agm.sab-1]
Length = 1039
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ L +G +K+++ + TTN + EL A + AL KV
Sbjct: 628 YVDGAANRNSKEGKAGY---LTDRGDQKVVA--LENTTNQKAELEAILLALRDSG--SKV 680
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + N + E + V + W+ H
Sbjct: 681 NIITDSQYAMGIIAGEPTES-------------DNNIVQQIIEELIKKEAVYIAWVPAHK 727
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 728 GVGGNEEIDKLVSQGIRQ 745
>gi|67527094|ref|XP_661584.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|40740261|gb|EAA59451.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|259481439|tpe|CBF74958.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 342
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 39/145 (26%), Gaps = 5/145 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ Y D G+G + + G +
Sbjct: 48 QISVYLD--SLQTGQGAGFGYTVYFGPILVTKGHGPAGPRTEVYDAEIIGAVEGLRAALG 105
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + V + + T + + + + + WI G
Sbjct: 106 QPCMGYSTQLVILLDNLAAASLLASYRPTLHR---HRLSESFGQLATQPWKPLQVCWIPG 162
Query: 128 HAGNQENEKVDRIARNAAVSFKNKI 152
H+G N+ D++A+ + + I
Sbjct: 163 HSGIAGNKLADKLAKLGSSIYSPNI 187
>gi|295314204|gb|ADF97450.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNKETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRKI 718
>gi|284164824|ref|YP_003403103.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
gi|284014479|gb|ADB60430.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
Length = 217
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+ GNPGP G G ++ ++++ +R A L +
Sbjct: 82 VLYVDGSSRGNPGPAGAGAVIMDATEDQLA--RLARPVGSRTGNNTAEYVALQLGLSELL 139
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y + S + + G ++ + + + H+ H
Sbjct: 140 ARYEPRRLDVRIDSMTVIRDVWGGDDPTEPGVETYSEGVAAALSSVPDHRYT------HL 193
Query: 130 GNQENEKVDRIARNAAV 146
+ + D +A A
Sbjct: 194 ADSDPNPADALATVGAD 210
>gi|4324847|gb|AAD17111.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1429
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 1022 YVDGAANRET-KMGKAGYVTDRGRQKIVSLNETTNQKTELQAIQL----ALQDSGSEVNI 1076
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1077 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLICKERVYLSWVPAHKGI 1123
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1124 GGNEQVDKLVSSGIRK 1139
>gi|27468045|ref|NP_764682.1| cell wall enzyme EbsB [Staphylococcus epidermidis ATCC 12228]
gi|57866933|ref|YP_188587.1| cell wall enzyme EbsB [Staphylococcus epidermidis RP62A]
gi|293366591|ref|ZP_06613268.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315590|gb|AAO04724.1|AE016747_221 cell wall enzyme EbsB [Staphylococcus epidermidis ATCC 12228]
gi|57637591|gb|AAW54379.1| cell wall enzyme EbsB, putative [Staphylococcus epidermidis RP62A]
gi|291319360|gb|EFE59729.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735292|gb|EGG71584.1| EbsB family protein [Staphylococcus epidermidis VCU045]
Length = 131
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
Y D A GNPG ++++ + + + N+ E A + AL +
Sbjct: 3 KIYFDAATKGNPGRSACAIIIKENSQRYTFTHDLGKMDNHSAEWAAMLHALEHARELKVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LLYTDS + Q + K + ++ V
Sbjct: 63 NALLYTDSKLIEDSMMQGKV---------KNAKFKVYFENIEILEQSFDLMFVRW----- 108
Query: 128 HAGNQENEKVDRIARN 143
++N++ +++A+
Sbjct: 109 -IPRKQNKEANQLAQQ 123
>gi|328834332|gb|AEB52753.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGKQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQGQPDKSE-------------SDLVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|224925774|gb|ACN69498.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K++S E ++ + +V +
Sbjct: 595 YVDGAANRETKIGKAGYV-TDRGRQKVVSITETTNQKTELQAINL----ALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|212383157|gb|ACJ25874.1| pol protein [Human immunodeficiency virus 1]
Length = 927
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 588 YVDGAANRETKMGKAGYVTDRGRQRIVHLSETTNQKTELQAIQLALQ-----DSGSEVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 643 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 689
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 690 GGNEQVDKLVSSGIRK 705
>gi|47118261|gb|AAT11247.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E TTN + EL A L +V +
Sbjct: 540 YVDGASNRET-KAGKAGYVTDRGRQKVVSLTE--TTNQKAELHAI--QLALQDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|2065473|gb|AAB54043.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1060
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIKEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 750 GGNQEVDHLVSQGIRQ 765
>gi|290466019|gb|ADD25361.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 598 YVDGAANRDTKLGKAGFVTDKGRQKVVS---IADTTNQKAELQAILLALQDSGQ--EVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 653 VTDSQYAMGII-------------HSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 700 GGNEQIDKLVSSGIRK 715
>gi|224089466|ref|XP_002189467.1| PREDICTED: pol-like protein ENS-3, partial [Taeniopygia guttata]
Length = 566
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 12 YTDGACSGNPGPGGW----GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+TD + W L G++ I G + + + +
Sbjct: 136 FTDASAKREGKI--WKYRAAALHISSGEQIITEGEGSTEVGELIAVWSVFQREAQNS--S 191
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +YTDS V+KG ++W+ WQQN W+ ++ V + W + + ++Q + W+
Sbjct: 192 SVYIYTDSYAVYKGCTEWLPFWQQNDWEV-NRIPVWQKEKWQEILNIASQGNFAVGWVAS 250
Query: 128 HAGN-----QENEKVDRIAR 142
H + + N K D +AR
Sbjct: 251 HQTDGNPAGEWNNKADELAR 270
>gi|218441128|ref|YP_002379457.1| ribonuclease H [Cyanothece sp. PCC 7424]
gi|218173856|gb|ACK72589.1| ribonuclease H [Cyanothece sp. PCC 7424]
Length = 313
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 17/144 (11%)
Query: 10 HAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI--KALTALKYP 66
Y DG GNPG G V++ G+ +S K TNN E I
Sbjct: 10 ILYFDGGSRGNPGEAAGAAVIVMANGQHYAVSKYLKIATNNEAEYTGLIIGLKQAQELGI 69
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++++ DS + + ++ L WI+
Sbjct: 70 KELIVKGDSQLIINQITGKW----------KVNSPHLKEFYHEAKQLIKNFEQITLNWIR 119
Query: 127 GHAGNQENEKVDRIARNAAVSFKN 150
EN+ D +
Sbjct: 120 ----RNENQLADTEVNRCIDRGEK 139
>gi|170100330|ref|XP_001881383.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644062|gb|EDR08313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 185
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 7 REVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNN-------RMELMAA 56
R + + DGA N P G GV E + + + A
Sbjct: 37 RRILIFADGAAPNNGRPDVRAGCGVAAGPSPISCCSFRLEPDAFHQLTNNRAELRAVEGA 96
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK---TSDKKTVKNIDLWMKFVE 113
IK + +++ TDS YV +G + +I+ W+ + + + + + +
Sbjct: 97 IKLDWKKEGIETIVIATDSEYVAEGATVYIRVWRSRSSRWVVQRANMDLWDRLMKVIEDK 156
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V+ Y I + N + DR A+ AA
Sbjct: 157 EREGIRVEFYLI----DRKWN-QADRYAKAAAD 184
>gi|58221018|gb|AAW68194.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 591 YVDGAANRETKIGKAGYVTDRGRQRIISLSETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 693 GGNEQVDKLVSNGIRK 708
>gi|68521955|gb|AAY98560.1| pol protein [Human immunodeficiency virus 1]
gi|212383304|gb|ACJ25936.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+IS E ++ + +V +
Sbjct: 599 YVDGAANRET-KMGKAGYITDKGRQKVISLTETTNQKTELQAIQL----ALQDSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|283444879|gb|ADB20347.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKIITLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVHLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|283444811|gb|ADB20288.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 596 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|238634161|gb|ACR52056.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDKSESELVDQIIEKLINKE-------------KVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|238634144|gb|ACR52041.1| pol protein [Human immunodeficiency virus 1]
gi|238634179|gb|ACR52072.1| pol protein [Human immunodeficiency virus 1]
gi|238635553|gb|ACR52791.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDKSESELVDQIIEKLINKE-------------KVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|38491899|gb|AAR22266.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +GK+K++S + T N+ + AI P +V +
Sbjct: 594 YVDGASNRET-KMGKAGYVTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGP-QVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPNESESEIVNLIIEELIKKDKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSKGIRK 711
>gi|37682421|gb|AAQ98119.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSKGIRK 710
>gi|319429297|gb|ADV56920.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTDKGRQKVVPLTETTNQKTELQAIYLALQ-----DSXSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIHAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|295314129|gb|ADF97384.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|256011230|gb|ACU55471.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 606 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 708 GGNEQVDKLVSAGIRKI 724
>gi|238635535|gb|ACR52776.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDKSESELVDQIIEKLINKE-------------KVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|30269367|gb|AAP29645.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +GK+KI+S E ++ + +V +
Sbjct: 596 YVDGAANRETKIGKAGYV-TDRGKKKIVSLTETTNQKTELQAICI----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESKLVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|82571192|gb|ABB83971.1| pol protein [Human immunodeficiency virus 1]
gi|212383181|gb|ACJ25884.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKKGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|62956403|gb|AAY23535.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSAGIRK 709
>gi|114801485|gb|ABI80059.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++A +
Sbjct: 698 GGNEQVDKLASSGIRK 713
>gi|59003589|gb|AAW83592.1| pol protein [Human immunodeficiency virus 1]
gi|212383253|gb|ACJ25916.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRETKIGKAGYVTDRGRQKIVSFTETTNQKTELQAIQLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 692 GGNEQVDKLVSTGIRK 707
>gi|17046553|gb|AAL34590.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 592 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETANQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|1332358|gb|AAB00746.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 1026
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G+ + +GK+K+ ++TTN + EL A A+T KV
Sbjct: 614 YTDGSCNRQSKEGKAGY---ITDRGKDKV--RILEQTTNQQAELEAFAMAVTDSGP--KV 666
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV + + + E + + + W+ H
Sbjct: 667 NIVVDSQYVMGIVTGQPAESESRIVNK-------------IIEEMIKKEAIYVAWVPAHK 713
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 714 GIGGNQEIDHLVSQGIRQ 731
>gi|283444901|gb|ADB20366.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 23/146 (15%)
Query: 7 REVHA-----YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+E+ Y DGA + G G + ++ + +M A++
Sbjct: 582 KELIIGAETFYVDGAANRETKIGKAGYVTDRGRQKVVSQSETTNQKAELQAIMLALQ--- 638
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+V + TDS Y G + ++ + + + +V
Sbjct: 639 --DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVY 683
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
L W+ H G NE+VD++ +
Sbjct: 684 LSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|58220981|gb|AAW68161.1| pol protein [Human immunodeficiency virus 1]
Length = 930
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 589 YVDGAANRETKMGKAGYVTDRGRQRIVHLSETTNQKTELQAIQLALQ-----DSGSEVNI 643
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 644 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 690
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 691 GGNEQVDKLVSSGIRK 706
>gi|49574427|gb|AAT66879.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSTGIRK 558
>gi|327458277|gb|AEA76578.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQKXXCLTETTNQKTELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIXKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|157274061|gb|ABV28327.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQK---AVPLDETTNQKAELEAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIRKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|149939410|gb|ABR45908.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSQGIRK 712
>gi|134255009|gb|ABO65235.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + +G++K++S E T N+ + AI +V +
Sbjct: 596 YVDGAASRETKRGKAG-YITNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|11761597|gb|AAG38926.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTDTTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|222428593|gb|ACM50204.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRDTKLGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQSKPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRKI 715
>gi|134254999|gb|ABO65226.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|17046849|gb|AAL34856.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ V R + K I+G + T R +A +V
Sbjct: 595 YVDGAANRDTKVGKAGY-VTDRGRQKIVSINGTTNQKTELRAIYLAL------QDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKDRVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|11761577|gb|AAG38908.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTDTTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|328834341|gb|AEB52761.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGKQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQGQPDKSE-------------SDLVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|295413453|gb|ADG07933.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKEGKAGYVTDRGRQKAVFLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESEVVNQIIEQLIRKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 331
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V+ YWI H G + NE D++A A
Sbjct: 119 QVEFYWIPAHQGIEGNELADKLAMEA 144
>gi|29243009|emb|CAD70671.1| Pol protein [Simian immunodeficiency virus - mon]
Length = 936
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++TTN + EL A + AL +
Sbjct: 522 YVDGAANRASKEGKAGYVTSTGQRKVIP---LEQTTNQKAELEAVLLALQNGPASMNI-- 576
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + ++ + + + +V L W+ H G
Sbjct: 577 VTDSQYVMGIL-------------ASKPEVSESPIVEKIIQQLLGKKQVYLSWVPAHKGI 623
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 624 GGNEEVDKLVSQGIRQ 639
>gi|19422003|gb|AAL87853.1|AF435966_2 pol protein [porcine endogenous retrovirus]
Length = 1139
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ G G + + S + T+ + ELM A+ L + +
Sbjct: 585 FTDGSSYVVEGKSMAGPPVVTGTRTIWASSLPEGTSAQKAELM-ALTQALRLAEGKSINI 643
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAG 130
YTDS Y ++Q G TS + +K + + +EA ++ + GH
Sbjct: 644 YTDSRYAFATAHVHGAIYKQRGLLTSAGREIKTKEEILSLLEALHLPKRLAIIHCPGHQK 703
Query: 131 -----NQENEKVDRIARNAAV 146
++ N+ DR+A+ AA
Sbjct: 704 AKDPISRGNQMADRVAKQAAQ 724
>gi|51950711|gb|AAU14904.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K+IS E T N+ + AI +V +
Sbjct: 594 YVDGAANRETKIGKAGYV-TDKGRQKVISITE---TTNQKTELEAIHLALQDSGQ-EVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIR 710
>gi|11761587|gb|AAG38917.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTDTTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|117643952|gb|ABK51645.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSAVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIQKDKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|38491811|gb|AAR22187.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ KV +
Sbjct: 597 YVDGASNRDTKLGKAGYVTDKGRQKVVSFTNTTNQKTELQAINLALQ-----DSGAKVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|13891874|gb|AAG50316.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTNTTNQRTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|212382948|gb|ACJ25773.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+++ E T N+ + AI +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKVVTLTE---TTNQKTELQAIHLALQDSG-SEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|17046613|gb|AAL34644.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQRIVNLTETTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|13569239|gb|AAK30982.1|AF286226_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAICIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|68522005|gb|AAY98605.1| pol protein [Human immunodeficiency virus 1]
gi|212382772|gb|ACJ25695.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A AL +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKVVT---LTETTNQRTELQAIYLALQDSG--SEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|283444842|gb|ADB20315.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 599 YVDGAANRETRIGKAGYVTDRGRQKIVPLSGTTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + E +V L W+ H G
Sbjct: 654 VTDSQYA--------LGIIQAQPDKSDSELVNQIIEQLIKKE-----RVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|56193076|gb|AAV84146.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 603 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 705 GGNEQVDKLVSNGIRK 720
>gi|77416896|sp|P17757|POL_HV2D1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + ++T+N + EL A AL KV +
Sbjct: 1050 YTDGSCNRQSKEGKAGYVTDRGRDRV---RVLEQTSNQQAELEAFAMALADSGP--KVNI 1104
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + + + V + W+ H G
Sbjct: 1105 IVDSQYVMGIVAGQPTESE-------------NRIVNQIIEDMIKKEAVYVAWVPAHKGI 1151
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1152 GGNQEVDHLVSQGIRQ 1167
>gi|308445386|gb|ADO32866.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRKI 719
>gi|302594740|gb|ADL59558.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 1 YVDGAANRDTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEKVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + KV L W+ H G
Sbjct: 56 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKEKVYLTWVPAHKGI 102
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 103 GGNEKIDKL 111
>gi|192335060|gb|ACF04047.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLEDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEELIKKEKIYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|134252329|gb|ABO64932.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYT-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSKGIRK 717
>gi|55735951|gb|AAV59684.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + ETTN + EL A L +V +
Sbjct: 595 YVDGASNRETKIGKAGYV---TDKGRQKAVSLTETTNQKAELQAI--QLALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLINKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|85700505|gb|ABC74623.1| pol protein [Human immunodeficiency virus 1]
Length = 955
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVPLSETTNQKTELQAIHLALQ-----DSESEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|62956387|gb|AAY23520.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|14579594|gb|AAK69313.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKIGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|331236740|ref|XP_003331028.1| hypothetical protein PGTG_12991 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310018|gb|EFP86609.1| hypothetical protein PGTG_12991 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1101
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 2/140 (1%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ + +TDG+ PG G + + ++ + + E L
Sbjct: 77 QALIIFTDGSWI--PGKGAGAAAVAHPSGASTVARLNPADSISNFETELIGIGLAISMAR 134
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ Y + + + I F + LYW
Sbjct: 135 EILKADLSCDYTDVAIFSDNQGALMRSADPISLSSGQQIYAENFFRMRLLGRTIRLYWCP 194
Query: 127 GHAGNQENEKVDRIARNAAV 146
H G + NEK D +A+ AA+
Sbjct: 195 AHEGIEANEKADTLAKAAAL 214
>gi|256010887|gb|ACU55300.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKVGKAGYVTNRGRQKVVTMTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|212535974|ref|XP_002148143.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210070542|gb|EEA24632.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 233
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH G + NE+ D+ A+ AA
Sbjct: 11 RPVTIQWVPGHNGVEGNEQADQAAKRAASK 40
>gi|169838897|ref|ZP_02872085.1| ribonuclease H [candidate division TM7 single-cell isolate TM7a]
Length = 93
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ NPGPGG+ V+ K + I G + +TTN RME +A I AL
Sbjct: 2 IIYYTDGSAVPNPGPGGFAVI---KDMKPHILGKDDDTTNIRMEGLAIIAAL-KDSAGAP 57
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTS 97
+YTDS + ++W WQ GW
Sbjct: 58 CEIYTDSEFWVNVITKWAAGWQSKGWNKK 86
>gi|146424156|gb|ABQ40059.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 589 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAICIALQ-----DSGSEVNI 643
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 644 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 690
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 691 GGNEQVDKLVSSGIRK 706
>gi|86753613|gb|ABD15035.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKIVTLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|45360147|gb|AAS59185.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + ETTN R EL A L +V +
Sbjct: 540 YVDGASNRETKKGKAGYV---TDKGRQKAISLTETTNQRAELQAI--QLALQDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEXVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
N++VD++
Sbjct: 642 GGNKQVDKLVSAGIRKI 658
>gi|86277648|gb|ABC88364.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 606 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSKVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + + + KV L W+ H G
Sbjct: 661 VTDSQYV-------------LGIIQAQPDKSDSELVNQIIEQLIEKEKVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSAGIRK 723
>gi|13891912|gb|AAG50335.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|85700635|gb|ABC74740.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKAGKAGYVTDRGRQKVITLNETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|93210686|gb|ABF00662.1| pol protein [Human immunodeficiency virus 1]
Length = 991
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + L A++ +V +
Sbjct: 584 YVDGAANRETKIGKAGYVTDRGRQKIVSLNETTNQKTELQALKLALQ-----DSGSEVNI 638
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 639 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 685
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 686 GGNEQVDKLVSKGIRK 701
>gi|37221458|gb|AAQ89858.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGXAGYVTNRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221454|gb|AAQ89856.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGXAGYVTNRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|17046723|gb|AAL34743.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|187371945|gb|ACD02840.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGAANRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIEKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VDR+
Sbjct: 698 GGNEQVDRLVSAGIRKI 714
>gi|156051540|ref|XP_001591731.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980]
gi|154704955|gb|EDO04694.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 975
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH + NE D++A+ A
Sbjct: 749 EISLNWVPGHTSVEGNELADKLAKEA 774
>gi|156034883|ref|XP_001585860.1| hypothetical protein SS1G_13377 [Sclerotinia sclerotiorum 1980]
gi|154698780|gb|EDN98518.1| hypothetical protein SS1G_13377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 362
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH + NE D++A+ A
Sbjct: 136 EISLNWVPGHTSVEGNELADKLAKEA 161
>gi|156043837|ref|XP_001588475.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980]
gi|154695309|gb|EDN95047.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 824
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH + NE D++A+ A
Sbjct: 598 EISLNWVPGHTSVEGNELADKLAKEA 623
>gi|56193041|gb|AAV84128.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E ++ + +V +
Sbjct: 599 YVDGAANRET-KMGKAGYVTDRGRQKIISLTETTNQKTELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|17046833|gb|AAL34842.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKKGKAGYVTDKGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 705 GGNEQVDKLVSNGIRK 720
>gi|288187590|gb|ADC42288.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKIGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011216|gb|ACU55464.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSXXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + + + KV L W+ H G
Sbjct: 651 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010853|gb|ACU55283.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + KG+EK++S +TTN + EL A AL +V +
Sbjct: 596 YVDGAANRDT-KMGKAGYVTDKGREKVVS--LTDTTNQKTELQAIYLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63098431|gb|AAY32469.1| pol protein [Human immunodeficiency virus 1]
gi|212383324|gb|ACJ25942.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A AL +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVA---LSETTNQRTELQAIHLALQDSG--SEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQSQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|38194929|gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 20/144 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALT--ALKY 65
Y DG+ N G GV+L G+ + E +T+NN+ E A I L
Sbjct: 1329 TLYVDGSS--NSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQAEYEAIIAGLHLAIELE 1386
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ +DS V + + + + ++ +
Sbjct: 1387 VTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNR----------FKEISFQHV 1436
Query: 126 KGHAGNQENEKVDRIARNAAVSFK 149
+ + N + D ++R A + K
Sbjct: 1437 R----RENNTRADALSRLATLKKK 1456
>gi|13569269|gb|AAK31009.1|AF286229_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212382812|gb|ACJ25713.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKAGKAGYVTDRGRQKVIHLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|315258526|dbj|BAJ46198.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDTKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|306416434|gb|ADM87064.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K +K KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIKKE-------------KVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|255983942|gb|ACU46043.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|256252457|dbj|BAH97578.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + K + ETTN + EL A L +V +
Sbjct: 596 YVDGAANRETKKGKAGYV---TDRGKQKAVSLTETTNQKAELQAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIQKEKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|256252447|dbj|BAH97569.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + K + ETTN + EL A L +V +
Sbjct: 596 YVDGAANRETKKGKAGYV---TDRGKQKAVSLTETTNQKAELQAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIQKEKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|37935861|gb|AAO47112.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAASRDTKLGKAGYVTEQGKQKIIELKETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|14290003|gb|AAK59189.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|62467690|gb|AAX83946.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDKGRQKVVSITETTNQKTELQAIHLALQ-----DSGTEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKDKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|26000265|gb|AAN75299.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSFTETTNQKTELQAIQLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637122|gb|ADZ34731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382778|gb|ACJ25697.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|90812193|gb|ABD98372.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+++ E T N+ + AI +V +
Sbjct: 593 YVDGAANRET-KMGKAGYVTDKGRQKVVTLTE---TTNQKTELQAIHLALQDSG-SEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSKGIRK 710
>gi|32261456|gb|AAP76521.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1023 YVDGAANRETKIGKAGYVTDKGRQKVVSLNETTNQKTELQAIQLALQ-----DSGSEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + +V L W+ H G
Sbjct: 1078 VTDSQYA-------------LGIIQAQPDKSDSEIVNQIIEQLIKKERVYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1125 GGNEQVDKLVSKGIRK 1140
>gi|39930159|emb|CAE46399.1| pol protein [Simian immunodeficiency virus]
Length = 1004
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDGA + G G+ K +ETTN + EL+ + AL KV
Sbjct: 596 YTDGAANRQTKQGRAGYVA-----TNGKQKVVTLEETTNQKAELIGVLMALQDSPN--KV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + ++ + W+ H
Sbjct: 649 NIVTDSQYALGIIAGTPTTSEHQ-------------IVEQIIQAMQGKEEIYITWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G N ++D++
Sbjct: 696 GIGGNTEIDKLVSKGIRQI 714
>gi|13095384|gb|AAK12250.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA +G G G+ KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANGETKLGKAGYA---TDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|38892637|gb|AAR27643.1| pol protein [Human immunodeficiency virus 1]
gi|212382588|gb|ACJ25614.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 592 YVDGASNRETKIGKAGYVTDRGRQKVITLSETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|87115992|gb|ABD19535.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGASNRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAHPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|263200902|gb|ACY70011.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 595 YVDGAANRETKLGXAGYVTDRGKHKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|158931135|sp|P17283|POL_SIVCZ RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1384
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+KIIS + L +V
Sbjct: 977 YVDGAANRETKTGKAGY---VTDKGKQKIIS----LENTTNQQAELKALLLALQDSDQQV 1029
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + + E + K+ L W+ H
Sbjct: 1030 NIVTDSQYVLGIIQSQPDHSE-------------SELVNQIIEELIKKEKIYLSWVPAHK 1076
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 1077 GIGGNEQVDKLVSAGIRK 1094
>gi|88174658|gb|ABD39402.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETNLGKAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSEL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|212382952|gb|ACJ25775.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQIALQ-----DSGSEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 708 GGNEQVDKLVSNGIRK 723
>gi|82571310|gb|ABB84077.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|71725983|gb|AAZ39117.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|288187541|gb|ADC42265.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGVEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVNGGIRK 657
>gi|255984720|gb|ACU46432.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI+ +V +
Sbjct: 41 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELXAIQLALQDSG-SEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESXLVNQIIEQLXXKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|212383172|gb|ACJ25880.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKGESELVNQIIEQLINKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|146424147|gb|ABQ40051.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRKKVVSLTETTNQKTELQAICIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|156033315|ref|XP_001585494.1| hypothetical protein SS1G_13733 [Sclerotinia sclerotiorum 1980]
gi|154699136|gb|EDN98874.1| hypothetical protein SS1G_13733 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 177
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 94 WKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
W + + K +A Q + + W GH + NE+ DR+A A
Sbjct: 10 WGMRGDAPPTSQWAFHKCHKAIRQLNIRVKWSPGHMEIEGNEEADRLANAGA 61
>gi|37935891|gb|AAO47138.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ K+ +
Sbjct: 592 YVDGAANRDTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAVLLALQ-----DSKEKINI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYALGIISSQPTQSE-------------SPIVQQIIEELTKKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|315258516|dbj|BAJ46189.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDTKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|238734291|gb|ACR55513.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + L + Y DGA + G + +G++K+I+ E ++ +
Sbjct: 580 LEKEPLAGIETFYVDGAANRET-KMGRAGYVTDRGRQKVITLTETTNQKTELQAINL--- 635
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + T ++ + + + K
Sbjct: 636 -ALQDSGSQVNIVTDSQYA-------------LGIIQAQPDTSESEIVNQIIEQLIKKEK 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|148536447|gb|ABQ85776.1| pol protein [Human immunodeficiency virus 1]
gi|148536457|gb|ABQ85785.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRKKVVSLTETTNQKTELQAICIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|56193024|gb|AAV84119.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|82280442|sp|O89290|POL_HV193 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|3114549|gb|AAD03169.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1023 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1078 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1125 GGNEQVDKLVSAGIRK 1140
>gi|73913864|gb|AAZ91838.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI++ E ++ + +V +
Sbjct: 604 YVDGAANRET-KMGKAGYVTDKGRQKIVTLTETTNQKTELQAIQL----ALQDSGSEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLINKERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSRGIRK 721
>gi|27227842|dbj|BAC45016.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELQAICIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|24181499|gb|AAN47119.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKKGKAGYVTDRGRQKIVSLDETTNQKTELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|13891914|gb|AAG50336.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|73913785|gb|AAZ91767.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 ITDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|306416472|gb|ADM87083.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSETEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|59003529|gb|AAW83538.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKGESELVNQIIEQLINKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|77416884|sp|P04588|POL_HV1MA RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1440
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1033 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 1087
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1088 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKDKVYLSWVPAHKGI 1134
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1135 GGNEQVDKLVSSGIRK 1150
>gi|256011536|gb|ACU55624.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + ++ I + A+K +V +
Sbjct: 596 YVDGAANRNTKLGKAGYVTNRGRQKVISLTDTTNQKTELEAINLALK-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|59003559|gb|AAW83565.1| pol protein [Human immunodeficiency virus 1]
gi|212383186|gb|ACJ25886.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|55139272|gb|AAV41294.1| pol protein [Human immunodeficiency virus 1]
gi|212383152|gb|ACJ25872.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLINKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|26245460|gb|AAN77389.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKIVTLTETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSQGIRK 709
>gi|348560|pir||S30484 pol polyprotein - human immunodeficiency virus type 2
Length = 656
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C G G + +++ + ++TTN + EL A + AL +
Sbjct: 453 YVDGSCHRQSKVGKAGYV---TDRDREKTKALQQTTNQQAELEAFLLALQDSGPKANI-- 507
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 508 VVDSQYVMGIVAGQPTESE-------------SKLVNQIIEEMIKKEAIYIAWVPAHKGI 554
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 555 GGNQEVDHLVSQGIRQ 570
>gi|328834264|gb|AEB52693.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDRGRQKIVTLNETTNQKAELQAIQLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|326416894|gb|ADZ73300.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++KI+S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKIVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|117643942|gb|ABK51636.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSAVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDNSESDLVNQIIEQLIQKDQVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|37682451|gb|AAQ98146.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYITDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|255984798|gb|ACU46471.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + B G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRBTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|212382663|gb|ACJ25648.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIISLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|11385957|gb|AAG35042.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 395 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGVRKI 513
>gi|306416320|gb|ADM87007.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +GK+K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRESKLGKAGY---VTDRGKQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|294934891|ref|XP_002781258.1| hypothetical protein Pmar_PMAR013589 [Perkinsus marinus ATCC 50983]
gi|239891662|gb|EER13053.1| hypothetical protein Pmar_PMAR013589 [Perkinsus marinus ATCC 50983]
Length = 181
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 11/142 (7%)
Query: 11 AYTDGACSGNPGPGGWG--------VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
YTDG+ G + G+ + + + + + E+ AI+
Sbjct: 25 IYTDGSKVPRDMRRGIAESTGCAFVAVNPRGGEVRRLFCLDPANSVYQAEV-VAIREALR 83
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + FS + K T + L+ K E A V
Sbjct: 84 YALEELIPGEGSHHRRIEIFSDSEAALKSINSTRRTKLTEEIELLYRKCDELGA--SVRF 141
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
WI H+ NE DR+A
Sbjct: 142 NWICSHSNVYYNEVADRLAXXG 163
>gi|212382958|gb|ACJ25778.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIITLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682831|gb|AAQ98411.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E TTN R EL A AL +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE--TTNQRTELHAIHLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221456|gb|AAQ89857.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGXAGYVTNRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|11385870|gb|AAG34999.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 395 YVDGAANRETKKGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 450 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLIKKE-----KVYLAWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 497 GGNEQVDKLVSTGIRK 512
>gi|88174718|gb|ABD39456.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDTSESETVNQIIEQLIKKEKVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRKI 719
>gi|86753603|gb|ABD15026.1| pol protein [Human immunodeficiency virus 1]
gi|212383367|gb|ACJ25960.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAATKDTKIGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSRGIRK 709
>gi|302685111|ref|XP_003032236.1| hypothetical protein SCHCODRAFT_109076 [Schizophyllum commune H4-8]
gi|300105929|gb|EFI97333.1| hypothetical protein SCHCODRAFT_109076 [Schizophyllum commune H4-8]
Length = 265
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 40/166 (24%)
Query: 11 AYTDGACSGNP--GPGG----------WGVLLRYKGK--------EKIISGGEKETTNNR 50
+TDGACSGN G GV+L +G + T+ R
Sbjct: 87 IFTDGACSGNGWEGSAAGDFILQMMSSIGVVLGQRGPGIDSFSLAITEAMDPGQRRTSQR 146
Query: 51 MELMAAIKALTALKYPCKVLLY----------TDSSYVHKGFSQWIKKWQQNGWKTS--- 97
EL+AAI+ + Y +DS YV +G ++W+ +W++NG++T+
Sbjct: 147 AELLAAIEGVRRSAVGDVHPFYGNAPQARIIVSDSEYVVRGMTEWLPQWKRNGFRTAIGG 206
Query: 98 ---DKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
+ +D ++ EA K + + H ++ DR+
Sbjct: 207 TPANLDLFLLLDRKIEQSEAGNNFKFGFWHVPRHLNHE----ADRL 248
>gi|259489393|tpe|CBF89628.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1054
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + + WI GH+G NE D++A+
Sbjct: 852 QWMESPSILTMQWKPLQVRWIPGHSGIAGNELADKLAKLG 891
>gi|212382635|gb|ACJ25635.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNPIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|156539831|ref|XP_001599317.1| PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia
vitripennis]
Length = 338
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 41/147 (27%)
Query: 7 REVHAYTDGACSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V +TDG+ + N G G W ++I+ + T + E+ A +A L
Sbjct: 194 NSVVWFTDGSKNENGVGAGAW----EKGDTQEIVCSLDHHATVFQTEIRAITEAAKWLLE 249
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV-DLYW 124
+ +E+ A+H V L W
Sbjct: 250 RGT-----------------------------------GQGTCRQALESLAEHNVVRLVW 274
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNK 151
+ GH+ N+K DR+A A + +
Sbjct: 275 VPGHSCVVGNKKADRLAGRGADGIRAR 301
>gi|73913854|gb|AAZ91829.1| pol protein [Human immunodeficiency virus 1]
gi|212383263|gb|ACJ25920.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIVHLTETTNQKTELQAIQLALQ-----DSGSAVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|73913893|gb|AAZ91864.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVTLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|67516173|ref|XP_657972.1| hypothetical protein AN0368.2 [Aspergillus nidulans FGSC A4]
gi|40746618|gb|EAA65774.1| hypothetical protein AN0368.2 [Aspergillus nidulans FGSC A4]
Length = 1411
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + + WI GH+G NE D++A+
Sbjct: 1209 QWMESPSILTMQWKPLQVRWIPGHSGIAGNELADKLAKLG 1248
>gi|270209676|gb|ACZ64263.1| pol protine [Human immunodeficiency virus 1]
Length = 1005
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ETTN + EL A AL +V +
Sbjct: 598 YVDGAANRDTKKGKAGYVTDRGRQK---AVSLTETTNQKAELQAIHLALQDSGP--EVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKTRIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRKI 716
>gi|229661974|gb|ACQ84422.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|68522145|gb|AAY98731.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 591 YVDGAANRETKIGKAGYVTDRGRQKIITLSETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|256011042|gb|ACU55377.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++K++S E ++ + +V +
Sbjct: 594 YVDGAASRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIYL----ALKDSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAKPDKSESEIVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 696 GGNEQVDKL 704
>gi|170046226|ref|XP_001850675.1| ribonucleoprotein [Culex quinquefasciatus]
gi|167869061|gb|EDS32444.1| ribonucleoprotein [Culex quinquefasciatus]
Length = 1200
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + W++ H NEK D +A+ A S
Sbjct: 917 ITVVWVRAHCSIPGNEKADLLAKKGAES 944
>gi|4336340|gb|AAD17766.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTELQAIYLALQ-----DSGIEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|257146476|emb|CAT00618.1| gag/pol precursor [HIV-1 M_97CD.KMST91]
Length = 1429
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +GK+KI+S TTN + EL A + AL +V +
Sbjct: 1022 YVDGASSRET-KMGKAGYVTDRGKQKIVS--LTGTTNQKAELHAILLALQDSGL--EVNI 1076
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1077 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIGKEKVYLSWVPAHKGI 1123
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1124 GGNEQVDKLVSSGIRK 1139
>gi|256011520|gb|ACU55616.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIQLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|194399869|gb|ACF60847.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGXAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + KV + W+ H G
Sbjct: 647 VTDSQYAIGII-------------QAKPDKSESELVSQIIEELIKKDKVYMAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSAGIRK 709
>gi|86277638|gb|ABC88355.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETRKGKAGYVTDRGRQKAVPLTETTNQKAELQAIWLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|63014641|gb|AAY25793.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E T N+ + AIK +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKIVSLNE---TTNQKTELHAIKLALQDSG-SEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|16118312|gb|AAL12686.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQK---AVSLAETTNQKAELHAIQLALQDSGP--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|331243639|ref|XP_003334462.1| hypothetical protein PGTG_15891 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313452|gb|EFP90043.1| hypothetical protein PGTG_15891 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 207
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 2/141 (1%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ ++DG G G + S + A+ L AL
Sbjct: 22 SDPNSLMIFSDGTYHPEKGGGAEAAVCPTLN--VFSSYSLGSDSLVSKNESEAVGILAAL 79
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++++ + ++ + N ++ E K+
Sbjct: 80 GLAKELVVELEIRHIMIFVDNQGVIRRTNDPLNPKPGQRIFKEIDKTLSELPCGLKMSFV 139
Query: 124 WIKGHAGNQENEKVDRIARNA 144
W GH NE D +A+ A
Sbjct: 140 WCPGHRDVLGNELADELAKEA 160
>gi|306416374|gb|ADM87034.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416306|gb|ADM87000.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416246|gb|ADM86970.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416202|gb|ADM86948.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|212383257|gb|ACJ25918.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAYNRDTKTGKAGYVTDRGRQKIVPLTETTNQKAELQAIQLALQESGP-----EVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 693 GGNEQVDKLVSKGIRK 708
>gi|326416824|gb|ADZ73265.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416818|gb|ADZ73262.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416790|gb|ADZ73248.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416786|gb|ADZ73246.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|93210913|gb|ABF00866.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKIVTLSETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|15788298|gb|AAL07745.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|2160333|dbj|BAA00710.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKV---KILEQTTNQQAELEAFAMALTDSGPKANIIV 679
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 680 --DSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAIYVAWVPAHKGI 724
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 725 GGNQEVDHLVSQGIRQ 740
>gi|319429294|gb|ADV56918.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGRQKVVSLXETTNQKTELQAICL----ALQDSGSEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + +V L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKDRVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGVRK 657
>gi|93210923|gb|ABF00875.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + G + A++ +V +
Sbjct: 599 YVDGAANRDTKMGKAGYVTDRGRQKIVSLGETTNQKTELQAIQLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|93210646|gb|ABF00626.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDQGRQKIVS---LTETTNQKAELHAI--QLALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|58220921|gb|AAW68107.1| pol protein [Human immunodeficiency virus 1]
gi|212383205|gb|ACJ25894.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETRIGKAGYVTDRGRQKVISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|77416902|sp|P12451|POL_HV2SB RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G+ + +GK+K+ ++TTN + EL A A+T KV
Sbjct: 1050 YTDGSCNRQSKEGKAGY---ITDRGKDKV--RILEQTTNQQAELEAFAMAVTDSGP--KV 1102
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV + + + E + + + W+ H
Sbjct: 1103 NIVVDSQYVMGIVTGQPAESESRIVNK-------------IIEEMIKKEAIYVAWVPAHK 1149
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 1150 GIGGNQEIDHLVSQGIRQ 1167
>gi|45360187|gb|AAS59221.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256252230|dbj|BAH97488.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K+IS E ++ + +V +
Sbjct: 599 YVDGAANRETKIGKAG-YITDKGRQKVISLTETTNQKTELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYAIGII-------------QAQPDKSESKLVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|167832887|gb|ACA02029.1| pol protein [Human immunodeficiency virus 1]
Length = 715
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + KG++KI+S E T N+ + AI+ +V
Sbjct: 592 YVDGAANRDTKLGKAGY---VTDKGRQKIVSLAE---TTNQKAELQAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|57869609|gb|AAW57655.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGASNRETKIGKAGYVTDKGRQKVVSLTKTTNQKAELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|288187722|gb|ADC42352.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIQLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256252210|dbj|BAH97470.1| Pol [Human immunodeficiency virus 1]
gi|256252220|dbj|BAH97479.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K+IS E ++ + +V +
Sbjct: 599 YVDGAANRETKIGKAG-YITDKGRQKVISLTETTNQKTELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYAIGII-------------QAQPDKSESKLVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|226348560|gb|ACO50599.1| pol protein [Human immunodeficiency virus 1]
Length = 370
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI +V
Sbjct: 21 YVDGASNKETKQGKAGY---VTDRGRQKTVSLTE---TTNQKAELQAIHLALQDSG-SEV 73
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 74 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERIYLTWVPAHK 120
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 121 GIGGNEQVDKLVSAGIRKI 139
>gi|212382945|gb|ACJ25772.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVTLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682461|gb|AAQ98155.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGASNRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|17046573|gb|AAL34608.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI++ E ++ + +V +
Sbjct: 600 YVDGAANRET-KMGKAGYVTDKGRQKIVALTETTNQKAELQAIQL----ALQDSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSRGIRK 717
>gi|167651335|gb|ABZ91129.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +SG + + +A +V
Sbjct: 599 YVDGAANRETKLGKAGY-VTDRGRQKIVSLSGTTNQKAELQAIQLAL------QDSGSEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSRGIRK 716
>gi|212383247|gb|ACJ25913.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S + G G+ + +G++KI+S E ++ + +V
Sbjct: 602 YVDGAASRDTKLGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 702 GIGGNEQVDKLVSNGIRK 719
>gi|115334503|dbj|BAF33234.1| Pol [Human immunodeficiency virus 1]
Length = 1000
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|15788288|gb|AAL07736.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVTQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|327474999|gb|AEA77102.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|319801091|emb|CBW48586.2| Pol protein [SIVcpz Ptt-04Cam155]
Length = 1002
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + TTN + EL A AL + V +
Sbjct: 595 YVDGAANRDSKKGRAGYVTDRGRQKVIN---LENTTNQQAELKALHLALQDSGHQ--VNV 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + E + KV L W+ H G
Sbjct: 650 VTDSQYVLGIIQSQPDYSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIR 711
>gi|295314194|gb|ADF97441.1| pol protein [Human immunodeficiency virus 1]
Length = 983
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K IS E T N+ + AI+ P +V +
Sbjct: 576 YVDGASNRET-KMGKAGYVTDRGRQKAISLTE---TTNQKAELQAIQLALQDSEP-EVNI 630
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 631 VTDSQYA-------------LGXXQAQPDKSESEVVNQIIEQLIKKEKVYLSWVPAHKGI 677
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 678 GGNEQVDKLVSAGIXK 693
>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1428
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1021 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGPEVNI 1075
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++KV L W+ H G
Sbjct: 1076 ITDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIQKNKVYLSWVPAHKGI 1122
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1123 GGNEQVDKLVSNGIRK 1138
>gi|90812173|gb|ABD98354.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPMAGVETFYVDGAANRETRMGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 639 ----DSGLEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIR 708
>gi|297499567|gb|ADI43372.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|290975680|ref|XP_002670570.1| predicted protein [Naegleria gruberi]
gi|284084130|gb|EFC37826.1| predicted protein [Naegleria gruberi]
Length = 453
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL-TALKYP 66
E +TDG+ S N G+ V+++ K +N M ++AI +
Sbjct: 143 EFTIWTDGSKSEN--KVGFSVIIQNNEFTKGYKYKLHSYHSNNMAELSAITTALHIIPPN 200
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ TDS K + T+ K K I + + ++ + + + W K
Sbjct: 201 SNAKVLTDSEIAVKIIN-----------NTNYKGQFKQIKDEITNLISTKKLQASIEWTK 249
Query: 127 GHAGN-QENEKVDRIARNA 144
H G N D+ A+ A
Sbjct: 250 AHTGITDGNNYADKKAKQA 268
>gi|117643972|gb|ABK51663.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + KV +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIQKDQVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|49574433|gb|AAT66882.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSTGIRK 558
>gi|325636902|gb|ADZ34546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIKELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|87116002|gb|ABD19544.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 773
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKVVSITETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|306416240|gb|ADM86967.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-AEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|289621052|emb|CBI51835.1| unnamed protein product [Sordaria macrospora]
Length = 223
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V++ W+ GH G NE VD +A+ A
Sbjct: 114 VNVRWVPGHKGITGNEIVDELAKAGAQ 140
>gi|256252467|dbj|BAH97587.1| Pol [Human immunodeficiency virus 1]
gi|256252477|dbj|BAH97596.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKQGKAGY---VTDRGRQKAVSLTE---TTNQKAELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRKI 714
>gi|13095334|gb|AAK12231.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +E + + A++ +V +
Sbjct: 443 YVDGAANRETKLGEAGYVTDKGRQEVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|19335964|emb|CAC38430.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I +ETTN R ELMA + AL K V +
Sbjct: 1028 YVDGAANRDTKLGKAGYVTEKGRQKIIK---LEETTNQRAELMAVLLALQDSKE--TVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV S + + + + E + + +V L W+ H G
Sbjct: 1083 VQDSQYVLGIISSQPTQSE-------------SSLVQQIIEELTKKEQVYLTWVPAHKGI 1129
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 1130 GGNEKIDKL 1138
>gi|327461|gb|AAA44653.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1015
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 608 YVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 663 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|326370705|gb|ADZ56479.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636940|gb|ADZ34578.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382605|gb|ACJ25620.1| pol protein [Human immunodeficiency virus 1]
Length = 944
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E + + +V +
Sbjct: 600 YVDGAANRET-KMGKAGYVTDRGRQKIISLTETTNQKTELRAIQL----ALQDSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|187371917|gb|ACD02815.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E TTN + EL A L +V
Sbjct: 594 YVDGASNRETKQGKAGY---VTDRGRQKAVSLTE--TTNQKAELHAI--QLALQDSGSEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VDR+
Sbjct: 694 GIGGNEQVDRLVSAGIRKI 712
>gi|45360210|gb|AAS59241.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 540 YVDGASNRETKKGKAGYVTDRGRQKAISLTETTNQKAELQAIQLALQ-----DSGSDVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|225564|prf||1306388B gene pol
Length = 1036
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 624 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 678
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 679 IVDSQYVMGISASQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 725
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 726 GGNQEVDHLVSQGIRQ 741
>gi|325636921|gb|ADZ34562.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416188|gb|ADM86941.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLSE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|255984124|gb|ACU46134.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPMTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|67552997|gb|AAY68594.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|38491791|gb|AAR22169.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDKGRQKVVPFTDTTNQKTELQAINLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein [Human immunodeficiency virus 2]
gi|158931163|sp|P18096|POL_HV2BE RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1550
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A+ KV +
Sbjct: 1051 YTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALA-----DSGPKVNI 1105
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + V + W+ H G
Sbjct: 1106 IVDSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAVYVAWVPAHKGI 1152
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1153 GGNQEVDHLVSQGIRQ 1168
>gi|3776301|gb|AAC64709.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 441 YVDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 496 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 542
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 543 GGNEKIDKL 551
>gi|60230|emb|CAA28012.1| pol polyprotein (NH2-terminus uncertain; AA at 1963) [Human
immunodeficiency virus 1]
Length = 902
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 495 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 549
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 550 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKDKVYLSWVPAHKGI 596
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 597 GGNEQVDKLVSSGIRK 612
>gi|157849794|gb|ABV89676.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|146424164|gb|ABQ40066.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELQAICIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|47027389|gb|AAT08769.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 601 YVDGAANKETKLGKAGFVTDRGKQKVVSIEDTTNQKTELQAILLALQ-----DSGQEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + E + +V L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIHSHPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|24181489|gb|AAN47110.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI++ E ++ + +V +
Sbjct: 595 YVDGAANRET-KMGKAGYVTDRGRQKIVTLNETTNQKTELQAIQL----ALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSKGIRK 712
>gi|16751230|gb|AAL05308.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSESEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 647 ITDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLSWVPAHNGL 693
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 694 AGNEHVDKLVSRGIRK 709
>gi|16118365|gb|AAL12731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S E T N+ + AI+ P +V
Sbjct: 596 YVDGASNRETKQGKAGY---VTDKGRQKAVSLTE---TTNQKAELHAIQLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIRKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRKI 714
>gi|325636984|gb|ADZ34615.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636953|gb|ADZ34589.1| pol protein [Human immunodeficiency virus 1]
gi|325637039|gb|ADZ34662.1| pol protein [Human immunodeficiency virus 1]
gi|325637044|gb|ADZ34666.1| pol protein [Human immunodeficiency virus 1]
gi|325637086|gb|ADZ34701.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|289469892|gb|ADC96601.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQSKPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|255984310|gb|ACU46227.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + A++ KV +
Sbjct: 41 YVDGASNRETKLGKAGYVTDRGRHRVVTLTDTTNQKTELQAIHLALQ-----DSGLKVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|46243165|gb|AAS83691.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVTLSETTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37682791|gb|AAQ98375.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++KI+S E T N+ + AI +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDKGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|5738567|emb|CAB53043.1| POL protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 597 YVDGAANKETKKGKAGYVTDKGRQRVISLTETTNQKTELQAINLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|326505852|dbj|BAJ91165.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R + G TNN E A + L +
Sbjct: 130 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYV 189
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ +D H
Sbjct: 190 RA-QGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQIN-----------HVLR 237
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 238 EFNADADAQANFAVE 252
>gi|326499834|dbj|BAJ90752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R + G TNN E A + L +
Sbjct: 211 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYV 270
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ +D H
Sbjct: 271 RA-QGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQIN-----------HVLR 318
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 319 EFNADADAQANFAVE 333
>gi|326488477|dbj|BAJ93907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 14/135 (10%)
Query: 14 DGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DGAC GNPG G GV++R + G TNN E A + L +
Sbjct: 130 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYV 189
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+Q W+ +D H
Sbjct: 190 RA-QGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQIN-----------HVLR 237
Query: 132 QENEKVDRIARNAAV 146
+ N D A A
Sbjct: 238 EFNADADAQANFAVE 252
>gi|256252194|dbj|BAH97461.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|238634519|gb|ACR52347.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|38491860|gb|AAR22231.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 590 YVDGAANRETKQGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 629
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 630 AIYLALQDSGLEVNIVTDSQYVLGIIQAKPDKSESEIVNQIIEELIKKDKVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 690 GIGGNEQVDKLVSAGIRK 707
>gi|37935841|gb|AAO47094.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 694 GGNEQIDKL 702
>gi|9368380|emb|CAB98169.1| POL protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKKGKAGYVTDRGRQKVVSLAETTNQKTELQAINLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|325636965|gb|ADZ34599.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|321462343|gb|EFX73367.1| hypothetical protein DAPPUDRAFT_253251 [Daphnia pulex]
Length = 159
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 14/142 (9%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+S+ ++ +T G + + K + ++ +AAI+
Sbjct: 18 ESQPANTINVFT-----GRDNRAACAFTIPSRDVNKAWK--LPDNSSIFSAELAAIRQAL 70
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
Y ++ + S + + D + + L + +
Sbjct: 71 DYIYNFEIAVVNIFSDSLASVMAIHNQRVDSHHLIKDIRQTVSNLLSSGT-------RTN 123
Query: 122 LYWIKGHAGNQENEKVDRIARN 143
WI H NE+ D +A
Sbjct: 124 FIWIPSHVTIPGNERADELATQ 145
>gi|288187517|gb|ADC42253.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEAVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|255984870|gb|ACU46507.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNKGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|212382832|gb|ACJ25722.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|212382825|gb|ACJ25719.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRDTKVGKAGYVTDRGRQKVISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|38892600|gb|AAR27610.1| pol protein [Human immunodeficiency virus 1]
gi|212382556|gb|ACJ25600.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGKQKVVSLSETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|38892727|gb|AAR27723.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKKGKAGYITDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|2232039|gb|AAB82087.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 441 YVDGAANRDTKLGKAGYVTEQGKQKIIKLNETTNQKAELMAVLLALQ-----DSKEKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 496 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 542
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 543 GGNEKIDKL 551
>gi|84043943|gb|AAQ76654.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKKGKAGYVTDRGRQKSIPLTETTNQKTELQAIQLALQ-----DSGPEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|45360200|gb|AAS59232.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ R
Sbjct: 642 GGNEQVDKLVRAGVR 656
>gi|256010793|gb|ACU55253.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGASNRETKIGKAGYVTDRGRQKVIPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|194399929|gb|ACF60901.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGASNRETKIGKAGYVTDKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSEGVRK 712
>gi|157005034|gb|ABV00739.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 605 YVDGAANRETKSGKAGYVTDKGRQKVVTLDNTTNQKTELQAIQLALQ-----DSGTEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 660 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 707 GGNEQVDKLVSAGIRK 722
>gi|93210656|gb|ABF00635.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKIGKAGYVTDRGRQKIVSLSETTNQKAELQAIQLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|55139309|gb|AAV41327.1| pol protein [Human immunodeficiency virus 1]
gi|212383223|gb|ACJ25902.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|49574429|gb|AAT66880.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSTGIRK 558
>gi|308388210|pdb|3P1G|A Chain A, Crystal Structure Of The Xenotropic Murine Leukemia
Virus-Related Virus (Xmrv) Rnase H Domain
Length = 165
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 20/144 (13%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ + K+
Sbjct: 27 YTDGSSFLQEGQRRAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKL 83
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+YTDS Y + + ++ ++ + GH
Sbjct: 84 NVYTDSRYAFATAHVHSEGREIKN----------KNEILALLKALFLPKRLSIIHCPGHQ 133
Query: 130 -GN----QENEKVDRIARNAAVSF 148
GN + N D+ AR AA+
Sbjct: 134 KGNSAEARGNRMADQAAREAAMKA 157
>gi|255984128|gb|ACU46136.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDRGRQKIVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|222428311|gb|ACM49979.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|212382747|gb|ACJ25683.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDRGRQKVITITDTTNQKTELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ ++ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKERIYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 699 GGNEQVDKLVSNGIRK 714
>gi|86371867|gb|ABC94980.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|328158|gb|AAA44869.1| pol polyprotein (NH2-terminus uncertain) [Human immunodeficiency
virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSQGIRK 712
>gi|87116012|gb|ABD19553.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|86753483|gb|ABD14918.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 734
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+I+ E ++ + +V +
Sbjct: 597 YVDGAANRET-KMGKAGYVTDRGRQKVITITETTNQKTELQAIQL----ALQDSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|326416850|gb|ADZ73278.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416846|gb|ADZ73276.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416842|gb|ADZ73274.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416840|gb|ADZ73273.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416836|gb|ADZ73271.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416832|gb|ADZ73269.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416816|gb|ADZ73261.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416800|gb|ADZ73253.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416798|gb|ADZ73252.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416784|gb|ADZ73245.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416782|gb|ADZ73244.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|256806949|gb|ACV29866.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|167833025|gb|ACA02121.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 540 YVDGAANRETKKGKAGYVTDRGRQRAISVTETTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIELLINKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|93210666|gb|ABF00644.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|93210696|gb|ABF00671.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVALSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|58221038|gb|AAW68212.1| pol protein [Human immunodeficiency virus 1]
gi|212383251|gb|ACJ25915.1| pol protein [Human immunodeficiency virus 1]
Length = 995
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 588 YVDGAANRETKIGKAGYVTDRGRQKIVTLNETTNQKTELQAIQLALQ-----DSGSAVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 643 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 689
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 690 GGNEQVDKLVSSGIRK 705
>gi|3776303|gb|AAC64710.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ KV +
Sbjct: 441 YVDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 496 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 542
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 543 GGNEKIDKL 551
>gi|68522015|gb|AAY98614.1| pol protein [Human immunodeficiency virus 1]
gi|212383184|gb|ACJ25885.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K+++ E ++ + +V +
Sbjct: 592 YVDGAANRDT-KMGKAGYVTDRGRQKVVTINETTNQKTELQAIQL----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKQRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|306416436|gb|ADM87065.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKIVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSDSDVVNQIIEELIKKDRVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187107|gb|ADC92133.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAMHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|241766488|ref|ZP_04764356.1| ribonuclease H [Acidovorax delafieldii 2AN]
gi|241363298|gb|EER58839.1| ribonuclease H [Acidovorax delafieldii 2AN]
Length = 161
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 39/137 (28%), Gaps = 11/137 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ NPG G GV+L E L AL +
Sbjct: 16 VVHCDGSAMPNPGRMGLGVVLCAPDGALHTFSQATHAIGCNNEA-----ELRALLLALEE 70
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA--SAQHKVDLYWIKG 127
L + + I G + + + V + V+ WI
Sbjct: 71 LQARGARALRVHSDSSILVEHLGGVVRPGLRPIARLQALFGQVRSLLQTFGPVEWVWIPR 130
Query: 128 HAGNQENEKVDRIARNA 144
H N + D +AR A
Sbjct: 131 HR----NGEADALARAA 143
>gi|156055178|ref|XP_001593513.1| hypothetical protein SS1G_04940 [Sclerotinia sclerotiorum 1980]
gi|154702725|gb|EDO02464.1| hypothetical protein SS1G_04940 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1636
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + + A
Sbjct: 1262 DIVIFSDGSKLANGNTGG-GFVGYQDNHKFCEGSLPLGRMKEVYDSEATAAFEGLKAAIS 1320
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + S + + + V + W+ G
Sbjct: 1321 SIESRIATDIYICLDNIEVAAR---LLSKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 1377
Query: 128 HAGNQENE 135
H NE
Sbjct: 1378 HKDVAGNE 1385
>gi|115334373|dbj|BAF33117.1| Pol [Human immunodeficiency virus 1]
Length = 1010
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKIGKAGYVTDRGRQKIVSLNETTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|32261465|gb|AAP76529.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1425
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1018 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKAELQAIQIALQ-----DSGSEVNI 1072
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1073 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLTWVPAHKGI 1119
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1120 GGNEQVDKLVSNGIRK 1135
>gi|15788268|gb|AAL07718.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEPLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|13569329|gb|AAK31063.1|AF286235_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ ++ +
Sbjct: 598 YVDGAANRETRIGKAGYVTDRGRQKIVTLTETTNQKSELQAIQLALQ-----DSGSEINI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|31559632|dbj|BAC77459.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1027 YVDGAASRETKLGKAGY---VTDRGRQKVVSPTE---TTNQKTELHAIHLALQDSG-SEV 1079
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1080 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 1126
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 1127 GIGGNEQVDKLVSKGIRK 1144
>gi|306416280|gb|ADM86987.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R A T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLAETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVNQIIEELIKKKKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|93210726|gb|ABF00698.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S E ++ + +V +
Sbjct: 597 YVDGAANRET-KMGKAGYVTDRGRQKTVSLTETTNQKTELQAIQI----ALQDSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|63098353|gb|AAY32399.1| pol protein [Human immunodeficiency virus 1]
gi|212383231|gb|ACJ25906.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKQGKAGYVTDRGRQKIVPLSETTNQKTELHAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|46243155|gb|AAS83682.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQRVVSLSETTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|21539310|gb|AAM51650.1| pol polyprotein [Visna/Maedi virus]
Length = 1122
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K +I G + R A + P K+ +
Sbjct: 594 YTDGGKKN--GIGNLGYIASTGEKYRIHEEGTNQQLELRAIEEA------CKQGPSKMNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + + + KV ++W+ GH G
Sbjct: 646 VTDSRYAYEFMLRNWDEEVIKNPIQARIMKIIHEKE-----------KVGVHWVPGHRGI 694
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +A+
Sbjct: 695 PQNEEIDQYISEIFLAKEG 713
>gi|26000255|gb|AAN75290.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGATNREAKIGKAGYVTDRGRQKIVTLTNTTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + ++ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSDSEIFNQIIEQLINKERIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSKGIRK 715
>gi|3252968|gb|AAD12115.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRDTKIGKAGYV-TDRGRQKIVSLTETTNQKTELQAICL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|87245348|gb|ABD34842.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKIVPMTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQSQPDKSESELVGQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 698 GGNEQIDKLVSNGIRK 713
>gi|58220911|gb|AAW68098.1| pol protein [Human immunodeficiency virus 1]
gi|212383306|gb|ACJ25937.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETRIGKAGYVTDRGRQKTVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|37221317|gb|AAQ89789.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+EK++S E T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGREKVVSLTE---TTNQKTELHAIHLALQDSGX-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + + + E + KV L W+ H
Sbjct: 593 NIVTDSQYV-------------LGIIQAQPDKSDSELVNQIIEELIKKDKVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGIRK 657
>gi|85700495|gb|ABC74614.1| pol protein [Human immunodeficiency virus 1]
Length = 910
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKRGKAGYVTGRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGTEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEGVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|256011686|gb|ACU55699.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYAMGII-------------QAQPDKSESELVSKIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011646|gb|ACU55679.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 599 YVDGAANRESKIGKAGYVTNRGRHKVVTLTXTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|255964745|gb|ACU44666.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTEXGKQKIIKLEETTNQKAELMAVLLALQ-----DSKETVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKEQVYLAWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|212382954|gb|ACJ25776.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S E ++ + +V
Sbjct: 592 YVDGAANRDTKLGKAGY---VTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSRGIRK 709
>gi|212382770|gb|ACJ25694.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 599 YVDGAASRETKQGKAGYVTDRGRQKIIPLTETTNQKAELQAIRLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIEKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|194399949|gb|ACF60919.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQRVISLTDTTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|38491821|gb|AAR22196.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|6651456|gb|AAF22308.1|AF193253_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKAVSLTE---TTNQKAELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIEKKKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|255984440|gb|ACU46292.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNXGRQKVVXLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238634126|gb|ACR52025.1| pol protein [Human immunodeficiency virus 1]
gi|238634188|gb|ACR52080.1| pol protein [Human immunodeficiency virus 1]
gi|238635559|gb|ACR52796.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|212383277|gb|ACJ25926.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|148745895|emb|CAK49336.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 962
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGASNRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 696 GGNEQVDKLVSNGIRK 711
>gi|37935888|gb|AAP42147.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I ETTN + EL+A + AL K +V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTEQGKQKIIK---LDETTNQKAELIAILLALQDSKK--EVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYALGIISSQPTQS-------------DSPIVQQIIEEMTKKERVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|4324808|gb|AAD17072.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1437
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1030 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEWVYLSWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1132 GGNEQVDKLVSQGIRKM 1148
>gi|315258594|dbj|BAJ46162.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNERVDKLVSAGIRK 718
>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 536
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTA--LKYP 66
DGA GNPG G +L+ + I G TNN E A I L K
Sbjct: 220 IEFDGASKGNPGLSGAAAVLKTEDGSLICRLRQGLGIATNNAAEYHALILGLKYAIEKGY 279
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K+ + DS V Q +W+ N + V
Sbjct: 280 KKIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKQLCNKC---------VSFE--I 328
Query: 127 GHAGNQENEKVDRIARNAAV 146
H N D A A
Sbjct: 329 SHVLRNLNADADEQANLAVR 348
>gi|256011060|gb|ACU55386.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256252424|dbj|BAH97452.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|209156866|gb|ACI39920.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKTGKAGYVTDRGRQK---AVPLTETTNQKAELHAI--WLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|87245358|gb|ABD34851.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKIVPMTDTTNQKTELQAIXLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQSQPDKSESELVGQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 698 GGNEQIDKLVSNGIRK 713
>gi|63098421|gb|AAY32460.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682910|gb|AAQ98479.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|68521995|gb|AAY98596.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 599 YVDGAASRETKQGKAGYVTDRGRQKIIPLTETTNQKAELQAIRLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIEKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|322702768|gb|EFY94394.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 561
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 29/144 (20%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
++ E+ Y+DG+ G G+G + R +
Sbjct: 298 LEGSSSDELVVYSDGSQLP-GGATGYGYAVHQNI---------GALEGLRAAVKI----- 342
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
D+S T+ + + + A +
Sbjct: 343 ------------PDASDNPIVVCLDNLAAATCLRGTASDSSQSAFVKFQEITAAHG--SI 388
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ WI GH NE+ D +A
Sbjct: 389 HVRWIPGHPDIPGNEQADSLANAG 412
>gi|288558575|dbj|BAI68344.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGKAGYVTDRGRQKIVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 247 VTDSQYALGIIQAQPDRSE-------------SEXVNQIIEELIKKEKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 294 GGNEQVDKLVSKGIRK 309
>gi|256011620|gb|ACU55666.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382631|gb|ACJ25633.1| pol protein [Human immunodeficiency virus 1]
Length = 919
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKIISLSETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|93210824|gb|ABF00786.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRETKIGKAG-YITDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|315258584|dbj|BAJ46153.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNERVDKLVSAGIRK 718
>gi|255983956|gb|ACU46050.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNKGRQKVVFLTDTTNQKSELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + K + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQEQPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|212382681|gb|ACJ25653.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|195409394|gb|ACF95958.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + ETTN + EL A AL + +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDKGRQRVVN---LTETTNQKAELHAIYLALQ--ESGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|122913077|gb|ABM68072.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNKETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|14290029|gb|AAK59212.1| gag protein [Human immunodeficiency virus 1]
Length = 1429
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1022 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 1076
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 1077 VTDSQYA-------------LGIIQAQPDKSESEIVNHIIEELIKKDKVYLSWVPAHKGI 1123
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 1124 GGNEQVDKLVSKGIR 1138
>gi|6358709|gb|AAF07333.1|AF188116_2 Pol protein [Simian immunodeficiency virus]
Length = 1035
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G G+ + GKEKI ++TTN + EL A + AL K V
Sbjct: 629 YVDGAAERVGKTGKAGY---ITQSGKEKIKE--LQDTTNQQAELEAVLLALQDSK--STV 681
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV K SQ + + + E + V L W+ H
Sbjct: 682 NIVTDSQYVMKVLSQRPTETEH-------------PIVKNIIKELQKKDAVYLGWVPAHK 728
Query: 130 GNQENEKVDRIARNAAVSFK 149
G N+++D++ + +
Sbjct: 729 GIGGNQEIDQLVIKGIRTKQ 748
>gi|14579614|gb|AAK69331.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 596 YVDGASNKETKKGKAGYVTDKGRQKVVS---LTETTNQKAELHAIYLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRKI 714
>gi|328834535|gb|AEB52934.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKAGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSQGIRK 713
>gi|327458347|gb|AEA76613.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIEKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|327458279|gb|AEA76579.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQKXXCLTETTNQKTELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIXKEXVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306416296|gb|ADM86995.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELINKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594678|gb|ADL59527.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E T N+ + AI +V +
Sbjct: 1 YVDGASNRET-KAGKAGYVTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SQVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSESEIVSLIIEKLIEKD-------------KVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRRI 119
>gi|260103582|gb|ACX31812.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212382724|gb|ACJ25672.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|156254409|gb|ABU62694.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLINKEKVYLTWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|119507939|dbj|BAF42344.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVSLNETTNQKTELQAIQLALQ-----DSESEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|119507949|dbj|BAF42353.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVSLNETTNQKTELQAIQLALQ-----DSESEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|327458229|gb|AEA76554.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKVISIADTTNQKTELQAILLALQ-----DAGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|319429300|gb|ADV56922.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++KI+S E ++ + +V +
Sbjct: 540 YVDGAANRETKIGKAGYV-TDRGRQKIVSLTETTNQKTELQAICL----ALQDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|307104154|gb|EFN52409.1| hypothetical protein CHLNCDRAFT_13162 [Chlorella variabilis]
Length = 125
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 31/132 (23%), Gaps = 10/132 (7%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYT 73
DGA NPGP GWG +L + + + A
Sbjct: 2 DGASKRNPGPAGWGAVLYDEATGVSRMCQYMGDQHTNNQAEYAGLIAGLQAALELGCRRI 61
Query: 74 DSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQE 133
+ K + + AS Q + +
Sbjct: 62 PGQGDRTLIIPAVLG--DWQVKNEGLRPYHAAATALMHRFASFQAR--------QVRREL 111
Query: 134 NEKVDRIARNAA 145
N+ D ++ A
Sbjct: 112 NQAADALSNQAI 123
>gi|256011328|gb|ACU55520.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TSD + V I + E KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDTSDSELVNQIIEQLIKKE-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011164|gb|ACU55438.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G + +G++K++S + T N+ + AI +V +
Sbjct: 599 YVDGAAHRET-KAGKAGYVTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ N
Sbjct: 701 GGNEKVDKLVSNGIRK 716
>gi|38491754|gb|AAR22136.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+++ E T N+ +AAI +V +
Sbjct: 595 YVDGAANRET-KMGRAGYVTDKGRQKVVTLTE---TTNQKTELAAIHLALQDSGL-EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|37682481|gb|AAQ98173.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|19335965|emb|CAC38421.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + M ++ A++ V +
Sbjct: 1028 YVDGAANRDTKLGKAGYVTEKGKQKIVKLEETTNQKAELMAVLLALQ-----DSKETVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 1083 VTDSQYVLGIISSQPTQSE-------------SPLVQQIIEELTQKEQVFLTWVPAHKGI 1129
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 1130 GGNEKIDKL 1138
>gi|14091516|gb|AAK53777.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14041623|emb|CAC38389.1| pol [Human immunodeficiency virus 1]
Length = 1009
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I M ++ A++ V +
Sbjct: 592 YVDGAANRDTKLGKAGYITEKGKQKIIKLEETTNQKAELMAVLLALQ-----DSKETVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQSE-------------SPLVQQIIEELTKKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|325637049|gb|ADZ34670.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|314907110|gb|ADT61984.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRKKIVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKARVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|157849802|gb|ABV89683.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELQAIYIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|63014432|gb|AAY25609.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAKPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|38491744|gb|AAR22127.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I T N+ + AI +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDKGRQKVIT----LTETTNQKTELEAIHLALQDSGL-EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYAMGII-------------HAQPDKSESELVSRIIEQLITKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 699 GGNEQVDKLVSNGIRK 714
>gi|12082829|gb|AAG48629.1|AF322109_2 pol protein [Caprine arthritis encephalitis virus]
Length = 1107
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G EK + N++ + AI+ + +
Sbjct: 581 YTDGGKKNAQGSFG----FISPTGEKFRRHEDG---TNQVLELRAIEDPCKQGPES-MNI 632
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + + + E + +V ++W+ GH G
Sbjct: 633 VTDSRYAYEFMLRNWDEQVIRNPIQA-----------RIMAEVHKKKQVGIHWVPGHKGI 681
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +AR
Sbjct: 682 PQNEEIDQYISEVFLAREG 700
>gi|86753523|gb|ABD14954.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + EV Y DGA + G G + ++ + + A++
Sbjct: 586 LEKEPIAEVETFYVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ- 644
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + +
Sbjct: 645 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELANKIIEQLIEKER 687
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++ N
Sbjct: 688 IYLSWVPAHKGIGGNEQVDKLVSNGIRK 715
>gi|82571221|gb|ABB83997.1| pol protein [Human immunodeficiency virus 1]
gi|212382788|gb|ACJ25702.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + KG++KI++ E ++ + +V +
Sbjct: 592 YVDGAASRET-KMGKAGYVTDKGRQKIVTLTETTNQKAELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|306416380|gb|ADM87037.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|306416352|gb|ADM87023.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKXELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------TEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289186920|gb|ADC92041.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|212383290|gb|ACJ25931.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|93210963|gb|ABF00911.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKRGKAGYVTNKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + I + E KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDTSESELANQIIEQLIKKE-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|67553112|gb|AAY68697.1| pol protein [Human immunodeficiency virus 1]
gi|212383313|gb|ACJ25940.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + L V Y DGA + G G + ++ + + A++
Sbjct: 581 LEKEPLTGVETFYVDGAANRETKVGKAGYVTDRGRQKVVTLNETTNQKTELQAIQLALQ- 639
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + + ++ + E + +
Sbjct: 640 ----DSGSEVNIVTDSQYA-------------LGIIQAQPDSSESELVNQIIEELIKKER 682
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 683 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 710
>gi|38892646|gb|AAR27651.1| pol protein [Human immunodeficiency virus 1]
gi|212382594|gb|ACJ25616.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIISLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682711|gb|AAQ98303.1| pol protein [Human immunodeficiency virus 1]
gi|37682928|gb|AAQ98495.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37682761|gb|AAQ98348.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13095435|gb|AAK12272.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSMTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIRAQPDQSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|295314099|gb|ADF97357.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|261327044|emb|CBH10019.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
Length = 1585
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 41/137 (29%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ S G +L R G E + + A++
Sbjct: 949 ELWTDGSVSLGEMCGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLP 1008
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
T S + + + + + ++ L ++ GH
Sbjct: 1009 AYRTTPSRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRIRLQFVFGHC 1068
Query: 130 GNQENEKVDRIARNAAV 146
G + NE D +A+ AA
Sbjct: 1069 GVKRNEVCDEMAKKAAD 1085
>gi|16751240|gb|AAL05317.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 592 YVDGAANRETKLGKAGY---ITDRGRQKVVSLRETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|13569249|gb|AAK30991.1|AF286227_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRDTKKGKAGYVTDRGRQKIVSLNETTNQKAELQAIQLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIGQLIKKERIYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|290992276|ref|XP_002678760.1| predicted protein [Naegleria gruberi]
gi|284092374|gb|EFC46016.1| predicted protein [Naegleria gruberi]
Length = 536
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL-TALKYP 66
E +TDG+ S N G+ ++++ K +N M ++AI +
Sbjct: 226 EFTIWTDGSKSEN--KVGFSIIIQNNEFTKGYKYKLHSYHSNNMAELSAITTALHIIPPN 283
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ TDS K + T+ K K I + + ++ + + + W K
Sbjct: 284 SNAKVLTDSEIAVKIIN-----------NTNYKGQFKQIKDEITNLISTKKLQASIEWTK 332
Query: 127 GHAGN-QENEKVDRIARNA 144
H G N D+ A+ A
Sbjct: 333 AHTGITDGNNYADKKAKQA 351
>gi|172044689|sp|Q9QBZ9|POL_HV197 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1429
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS E T N+ + AI +V
Sbjct: 1023 YVDGAANRETKQGKAGY---VTDKGRQKVISITE---TTNQKTELQAIHLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 1076 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1123 GIGGNEQVDKLVSSGIRK 1140
>gi|63014579|gb|AAY25738.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 589 YVDGAASRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 641
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 642 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIRKEKVYLSWVPAHK 688
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 689 GIGGNEQVDKLVSSGIRK 706
>gi|327458345|gb|AEA76612.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIEKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|255984052|gb|ACU46098.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSKGIRK 657
>gi|168208537|gb|ACA21837.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 693 GGNEQVDKLVSKGIR 707
>gi|157005140|gb|ABV00834.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 599 YVDGAANRET-KMGKAGYVTDRGRQKIVSLAETTNQKTELQAIQL----ALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDRVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|17046663|gb|AAL34689.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKKGKAGYVTDRGRQKIVPLTETTNQKTELHAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 695 GGNEQVDKLVSKGIR 709
>gi|14290021|gb|AAK59205.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|13891864|gb|AAG50311.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKVVPVTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|85700645|gb|ABC74749.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 592 YVDGAANRET-KAGRAGYVTDRGRQKVISLTETTNQKAELQAIQI----ALQDSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQGQPDKSE-------------SELVNQIIEQLINKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|76496256|gb|ABA43647.1| pol protein [Human immunodeficiency virus 1]
Length = 902
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 495 YVDGASNRETKKGKAGYVTDRGRQKAVPLTETTNQKAELKAVQLALQ-----DSGAEVNI 549
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 550 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 596
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 597 GGNEQVDKLVSAGIRKI 613
>gi|37682471|gb|AAQ98164.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKVVSLNETTNQKAELQAIQLALQ-----DSKSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|325634838|gb|ADZ32787.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|289186966|gb|ADC92063.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKKKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|115334433|dbj|BAF33171.1| Pol [Human immunodeficiency virus 1]
Length = 1008
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 597 YVDGAASKETKKGKAGYVTDRGRQKVVTLAETTNQKTELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRK 714
>gi|22532283|gb|AAM97877.1|AF492623_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDKGRQKVVT---LTETTNQKAELEAIHLALQDSGL--EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQY-------------CLGIIQAQPDKSESELVSQIIEQLIKKEKVYLXWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|1353862|gb|AAB36501.1| protease/RT/RNAseH/integrase [Human immunodeficiency virus 1]
Length = 1010
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIILAQPDKSESEIVNQIIEQLISKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|325634862|gb|ADZ32808.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|255984758|gb|ACU46451.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984468|gb|ACU46306.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNKGRQKVVSINDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|158380348|gb|ABW37386.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 592 YVDGAASRETKTGKAGYVTDRGRQKIISLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|145607808|ref|XP_365845.2| hypothetical protein MGG_10065 [Magnaporthe oryzae 70-15]
gi|145015303|gb|EDJ99839.1| hypothetical protein MGG_10065 [Magnaporthe oryzae 70-15]
Length = 1336
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1084 EVRVRWCPGHQGIPGNDRADELAKAG 1109
>gi|9626703|ref|NP_040973.1| pol polyprotein [Feline immunodeficiency virus]
gi|323935|gb|AAB59937.1| pol polyprotein [Feline immunodeficiency virus]
Length = 996
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK E E +N + E+ A + AL A ++
Sbjct: 471 YIDGG--RKLGKAAKAAYWTDTGK---WQVMELEGSNQKAEIQALLLALKAGSEEMNII- 524
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV Q + E + + + W+ GH G
Sbjct: 525 -TDSQYVINIILQQ--------------PDMMEGIWQEVLEELEKKTAIFIDWVPGHKGI 569
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 570 PGNEEVDKL 578
>gi|5668924|gb|AAD46076.1|AF076475_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S E ++ + +V +
Sbjct: 596 YVDGAANRETKK-GRAGYVTDKGRQKVVSLTETTNQKTELQTIYL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + ++ L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIQKDQIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|3252920|gb|AAD12072.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDRGRQKIVPLTETTNQKTELQAIYLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|77416901|sp|P04584|POL_HV2RO RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1464
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 1052 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 1106
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1107 IVDSQYVMGISASQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 1153
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1154 GGNQEVDHLVSQGIRQ 1169
>gi|77416895|sp|P24107|POL_HV2CA RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 1050 YTDGSCNRQSKEGKAGYVTDRGRDKV---KILEQTTNQQAELEAFAMALTDSGPKANIIV 1106
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 1107 --DSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAIYVAWVPAHKGI 1151
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1152 GGNQEVDHLVSQGIRQ 1167
>gi|328834442|gb|AEB52851.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|315504418|ref|YP_004083305.1| phosphoglycerate mutase [Micromonospora sp. L5]
gi|315411037|gb|ADU09154.1| Phosphoglycerate mutase [Micromonospora sp. L5]
Length = 382
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 15/133 (11%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTAL 63
R V DG GNPGP G+G ++R + S TNN E I L A
Sbjct: 4 RAVVIEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAA 63
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ + S+ + + W+ V A V
Sbjct: 64 AELGAAEV------EARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAA--VRFT 115
Query: 124 WIKGHAGNQENEK 136
W+ + N
Sbjct: 116 WVP----RERNRH 124
>gi|212383330|gb|ACJ25945.1| pol protein [Human immunodeficiency virus 1]
Length = 872
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 465 YVDGAANRETKIGKAGYVTDKGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 519
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 520 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 566
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 567 GGNEQVDKLVSSGIRK 582
>gi|212382810|gb|ACJ25712.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVPLSETINQKTELKAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|145606837|ref|XP_361315.2| hypothetical protein MGG_12062 [Magnaporthe oryzae 70-15]
gi|145014473|gb|EDJ99041.1| hypothetical protein MGG_12062 [Magnaporthe oryzae 70-15]
Length = 919
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 675 EVRVRWCPGHQGIPGNDRADELAKAG 700
>gi|67552987|gb|AAY68585.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 23/150 (15%)
Query: 1 MDSKHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
++ + V Y DGA + G G+ + +G++K+IS E TTN + EL A +
Sbjct: 580 LEKDPMIGVETFYVDGAANRETKLGKAGY---VTDRGRQKVISLTE--TTNQKTELQAIL 634
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL +V + TDS Y G + ++ + + +
Sbjct: 635 LALQDSG--SEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINK 679
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 680 EKVYLSWVPAHKGIGGNEQVDKLVSTGIRK 709
>gi|68522035|gb|AAY98632.1| pol protein [Human immunodeficiency virus 1]
gi|212383293|gb|ACJ25932.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKMGKAGYVTDRGRQKIVTLTETTNQKAELQAIQIALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLINKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|306416226|gb|ADM86960.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------TEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|292658922|gb|ADE34317.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|148745877|emb|CAK49327.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELXAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIRKI 715
>gi|37682771|gb|AAQ98357.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEDLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|17046743|gb|AAL34761.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E T N+ + AI+ P +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIISLTE---TTNQKAELHAIQLALQDSGP-EVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|302594718|gb|ADL59547.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+I+ + T N+ + AI +V +
Sbjct: 1 YVDGASNRET-KMGKAGYVTDKGRQKVITLTD---TTNQKTELEAIHLALQDSG-SEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + A+ +V L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIAKERVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|255983982|gb|ACU46063.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNRGRQKVVPLTDTTNQKTELQAICLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNXIIEZLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|156056264|ref|XP_001594056.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980]
gi|154703268|gb|EDO03007.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1584
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 30/152 (19%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + Y+ I
Sbjct: 1268 NTITIYTDASSTLEGIGVGIGIVVILPNGR-------ISYQETINIGVNQLVYNGELLGV 1320
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + K +Y+D+ ++ S ++ + +
Sbjct: 1321 TKAIEYANLIAQPGNKFKIYSDNQ---------AGLFRLKTPSDSPGQSCQIKAIKAAEA 1371
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++ L W+ GH Q NE D +A+ A
Sbjct: 1372 IQNKGAEISLNWVPGHTSVQGNELADSLAKEA 1403
>gi|126360752|gb|ABO09897.1| pol protein [Simian immunodeficiency virus]
Length = 655
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + + + + TTN + EL A + ALT +
Sbjct: 356 YVDGAANRNSKLGRAGY-----VTDRGQEKAIDLENTTNQKAELQAILMALTDGPPKMNI 410
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS Y G T+ +T ++ + + + + L W+ H
Sbjct: 411 --VTDSQYA-------------LGIITAAPETSESPLVEKIIQQLLTKEAIYLSWVPAHK 455
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD +
Sbjct: 456 GIGGNQEVDHLVSKGIRQ 473
>gi|63014547|gb|AAY25710.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|90812143|gb|ABD98327.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKAGKAGYVTDRGRQKAIHLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|37221324|gb|AAQ89792.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221322|gb|AAQ89791.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221326|gb|AAQ89793.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|327458269|gb|AEA76574.1| pol protein [Human immunodeficiency virus 1]
gi|327458271|gb|AEA76575.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477623|gb|ADM89186.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSAGIRK 558
>gi|306416314|gb|ADM87004.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VDR+ +
Sbjct: 541 GIGGNEQVDRLVSSGIRK 558
>gi|238734230|gb|ACR55460.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRDTKLGKAGYVTNRGRQKVVSIADTTNQKTELQAIYLALQ-----DSGTEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|212383286|gb|ACJ25930.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 23/150 (15%)
Query: 1 MDSKHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
++ + V Y DGA + G G+ + +G++K+IS E TTN + EL A +
Sbjct: 580 LEKDPMIGVETFYVDGAANRETKLGKAGY---VTDRGRQKVISLTE--TTNQKTELQAIL 634
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL +V + TDS Y G + ++ + + +
Sbjct: 635 LALQDSG--SEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINK 679
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 680 EKVYLSWVPAHKGIGGNEQVDKLVSTGIRK 709
>gi|212382574|gb|ACJ25608.1| pol protein [Human immunodeficiency virus 1]
Length = 906
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 593 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|82571202|gb|ABB83980.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLSETTNQKTELQATQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|306416318|gb|ADM87006.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416244|gb|ADM86969.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSDSDVVNQIIEELIKKDRVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|289186936|gb|ADC92048.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|134284820|gb|ABO69507.1| pol [Feline immunodeficiency virus]
Length = 1145
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW K E E +N E A AL A ++
Sbjct: 607 YIDGGRKKGQKARAGW------WKNSKEWQIMEIEGSNQVAEAQALNMALKAGPEKMNII 660
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 661 --TDSQYVYNMI--------------RARPEPSSPLWKEIIEELQKKEKIFLDWVPGHKG 704
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 705 IPGNKEIDEL 714
>gi|110815946|sp|Q9WC63|POL_HV1S9 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1025 YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTELQAIYLALQ-----DSGIEVNI 1079
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 1080 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 1126
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1127 GGNEQVDKLVSSGIRK 1142
>gi|56193092|gb|AAV84155.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S E ++ + +V +
Sbjct: 602 YVDGAANRET-KMGKAGYVTDRGRQKCVSLTETTNQKTELQAIQL----ALQDSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIELLINKERVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIRK 719
>gi|86753593|gb|ABD15017.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVPLSETINQKTELKAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|312601799|gb|ADQ92459.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNERVDKLVSAGIRK 719
>gi|306416368|gb|ADM87031.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|260533744|gb|ACX45142.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKKGKAGYITDRGRQKVISLTETTNQKTELYAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDKSESELVDLIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|283444834|gb|ADB20308.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A L +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVS---LTETTNQRAELQAI--QLALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + V L W+ H G
Sbjct: 647 VTDSQYALGIIQTQPDKSE-------------SELVNQIIEQLIKKEMVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|256010803|gb|ACU55258.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + ++ A++ KV +
Sbjct: 601 YVDGAASRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAILLALQ-----DSGAKVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRKI 719
>gi|255984002|gb|ACU46073.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTDRGRQKVVSXPETTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|226347281|gb|ACO50051.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASSRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKAELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13891898|gb|AAG50328.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13891918|gb|AAG50338.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPFTDTTNQRTELQAIHLALQ-----DSDLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891860|gb|AAG50309.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13891862|gb|AAG50310.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|13891858|gb|AAG50308.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|78172828|gb|ABB29362.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKIITITETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|77416877|sp|P04587|POL_HV1B5 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1447
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLALQ-----DSGLEVNI 1094
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1095 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1141
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1142 GGNEQVDKLVSAGIRKI 1158
>gi|325634995|gb|ADZ32924.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|212383255|gb|ACJ25917.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212382625|gb|ACJ25630.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|327458361|gb|AEA76620.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVTLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 XIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416458|gb|ADM87076.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416396|gb|ADM87045.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416364|gb|ADM87029.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416360|gb|ADM87027.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416332|gb|ADM87013.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416330|gb|ADM87012.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416308|gb|ADM87001.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416268|gb|ADM86981.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416254|gb|ADM86974.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416232|gb|ADM86963.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306416198|gb|ADM86946.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416182|gb|ADM86938.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289187282|gb|ADC92220.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXXVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRKI 658
>gi|257875747|ref|ZP_05655400.1| RNase H [Enterococcus casseliflavus EC20]
gi|257809913|gb|EEV38733.1| RNase H [Enterococcus casseliflavus EC20]
Length = 138
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GN GP G G+++ + I+ ++TN++ E + AL +
Sbjct: 2 LKVYLDASTKGNLGPSGGGIVIVGTDLHEQIAFPLPDSTNHQAEFAVMVNAL-------Q 54
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+L+ K Q K K + L + W+
Sbjct: 55 LLIDKGLQEQTIMLYTDSKVVAQTIDKNYTKNPAFSDYLTEIQYLLKQFALAIIQWVP-- 112
Query: 129 AGNQENEKVDRIARNA---AVSFKNK 151
+N+ D +AR A+ K++
Sbjct: 113 --ESQNKGADHLARQGLAKAMKLKDR 136
>gi|256010839|gb|ACU55276.1| pol protein [Human immunodeficiency virus 1]
Length = 821
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 557 YVDGASNRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGXEVNI 611
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 612 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 658
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 659 GGNEQVDKLVSAGIRK 674
>gi|212382823|gb|ACJ25718.1| pol protein [Human immunodeficiency virus 1]
Length = 900
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVTLSETTNQKTELQAIRLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSRGIRK 716
>gi|93210776|gb|ABF00743.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 901
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVTLSETTNQKTELQAIRLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSRGIRK 716
>gi|63098306|gb|AAY32357.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVISLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|38491801|gb|AAR22178.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 597 YVDGAANRETKLGKAGYVTDKGRQKVVPFTDTTNQKTELQAINLALQ-----DSGSKVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|22596309|gb|AAN03092.1|AF457061_2 pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E T N+ + AIK +V +
Sbjct: 593 YVDGAANRET-RMGKAGYVTDKGRQKIVSLTE---TTNQKAELQAIKLALQDSGL-EVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|17046673|gb|AAL34698.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 604 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELQAIHLALQDSG-SEV 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + +V L W+ H
Sbjct: 657 NIVTDSQYAFGII-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 703
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 704 GIGGNEQVDKLVSSGIRKA 722
>gi|1332356|gb|AAB00737.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 963
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A+ KV +
Sbjct: 464 YTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALA-----DSGPKVNI 518
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + V + W+ H G
Sbjct: 519 IVDSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAVYVAWVPAHKGI 565
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 566 GGNQEVDHLVSQGIRQ 581
>gi|14091522|gb|AAK53780.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14091530|gb|AAK53784.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|83722760|gb|ABC41654.1| pol protein [Feline immunodeficiency virus]
Length = 1135
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW K E E +N E A AL A ++
Sbjct: 605 YIDGGRKKGQKARAGW------WKNSKEWQIMEIEGSNQVAEAQALNMALKAGPEKMNII 658
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 659 --TDSQYVYNMI--------------RARPEPSSPLWKEIIEELQKKEKIFLDWVPGHKG 702
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 703 IPGNKEIDEL 712
>gi|306416288|gb|ADM86991.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288187531|gb|ADC42260.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011712|gb|ACU55712.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKXGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|255984614|gb|ACU46379.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSXLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984022|gb|ACU46083.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIXAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|224986253|gb|ACN74824.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|227504616|ref|ZP_03934665.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
gi|227198826|gb|EEI78874.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
Length = 391
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGE---KETTNNRMELMAAIKALT 61
++ + + DG GNPG G G + K+ + ++TNN E ++ L
Sbjct: 1 MK-LVIFADGGSRGNPGIAGSGTAVYSADRKQLLREIAYVVGTKSTNNVAEYHGLLRGLE 59
Query: 62 ALKYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
A V Y DS V + + K
Sbjct: 60 AAVEMGADDVDFYMDSKLVVEQMNGRW----------KIKHPDMQALALEARKLIDQIGS 109
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
L W+ +N+ D ++
Sbjct: 110 FTLTWVP----RAKNKAADALSN 128
>gi|212383168|gb|ACJ25879.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKIGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVDI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|158380336|gb|ABW37376.1| pol protein [Human immunodeficiency virus 1]
Length = 982
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 575 YVDGAASRETKTGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 629
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 630 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 676
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 677 GGNEQVDKLVSSGIRK 692
>gi|5738576|emb|CAB53051.1| POL protein [Human immunodeficiency virus 1]
Length = 951
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 602 YVDGAANRETKQGKAGY---VTDRGRQKVVSLTETTNQKTELQAINL----ALQDSGSEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRK 719
>gi|24181509|gb|AAN47128.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKKGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQ-----DSGPEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|84043945|gb|AAS46509.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKMGKAGYVTDRGRQKIVTLTETTNQKTELQAIQIALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|288558547|dbj|BAI68330.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGXAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 247 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIRK 309
>gi|256011706|gb|ACU55709.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + E + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQSQPDKSESEIVMQIIEELIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|38491771|gb|AAR22151.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDKGRQKVIT---LTETTNQKTELEAIYLALQDSGL--EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYAMGII-------------HAQPDKSESELVSRIIEQLITKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 699 GGNEQVDKLVSNGIRK 714
>gi|38491648|gb|AAR22042.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS E TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVISLTE--TTNQRTELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVSQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|17046793|gb|AAL34806.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSRGIRK 713
>gi|22596465|gb|AAN03230.1|AF457079_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 23/151 (15%)
Query: 1 MDSKHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
++ L V Y DGA + G G+ + +G++K++S E T N+ + AI
Sbjct: 584 LEKDPLERVETFYVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKAELHAI 637
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+V + TDS Y + + +K ++
Sbjct: 638 HLALQDSG-SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD------------ 684
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
KV L W+ H G NE+VD++ +
Sbjct: 685 -KVYLSWVPAHKGIGGNEQVDKLVSSGIRKI 714
>gi|13095351|gb|AAK12239.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---ITDKGRQKVVSITD---TTNQKTELQAIHLALQDSG-SEV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDRSE-------------SELVRQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|329381|gb|AAA45366.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSQGIRK 712
>gi|302672936|ref|XP_003026155.1| hypothetical protein SCHCODRAFT_238715 [Schizophyllum commune H4-8]
gi|300099836|gb|EFI91252.1| hypothetical protein SCHCODRAFT_238715 [Schizophyllum commune H4-8]
Length = 278
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 11 AYTDGACSGNPGPGGWGVLL--------RYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+T GAC G G V+L ++ ++ T+ R EL+AA+ +
Sbjct: 89 VFTSGACV--DGRAGISVVLGQIGPGIDQFAQPVTDEMDPGQKRTSQRAELLAALIGVRR 146
Query: 63 LKYPCKVLLY-------------TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
TDS YV KG ++W+ +W++NGWKTS T N+DL+
Sbjct: 147 AMDGDLHEYEGYDPSAMKERIIATDSEYVVKGMTEWMGQWKRNGWKTSMGMTPANLDLFQ 206
Query: 110 KFVEASAQHKVDLYWIKG--HAGNQENEKVDRIARNAAV 146
+ +V+ + G N + D++AR AA
Sbjct: 207 LLERTIEEMEVEHNAVFGFWQVPKSVNREADKMARAAAR 245
>gi|289186960|gb|ADC92060.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186958|gb|ADC92059.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186954|gb|ADC92057.1| pol protein [Human immunodeficiency virus 1]
gi|289186956|gb|ADC92058.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186948|gb|ADC92054.1| pol protein [Human immunodeficiency virus 1]
gi|289186962|gb|ADC92061.1| pol protein [Human immunodeficiency virus 1]
gi|289186984|gb|ADC92072.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186940|gb|ADC92050.1| pol protein [Human immunodeficiency virus 1]
gi|289186978|gb|ADC92069.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|224986183|gb|ACN74761.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|63098401|gb|AAY32442.1| pol protein [Human immunodeficiency virus 1]
gi|212383245|gb|ACJ25912.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDKGRQKIVSLAETTNQKAELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 695 GGNEQVDKLVSKGIR 709
>gi|14530228|gb|AAK65962.1|AF286236_2 pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL +
Sbjct: 597 YVDGAANRETKKGKAGYVTDRGRQKVIS---LTETTNQKAELQALYLALQDSGLEANI-- 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDSSESELVNQIIEQLIKKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 699 GGNEQADKLVSAGIRK 714
>gi|77416887|sp|P18802|POL_HV1ND RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1025 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGLEVNI 1079
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1080 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1126
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1127 GGNEQVDKLVSQGIRK 1142
>gi|306416426|gb|ADM87060.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 559
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 440 YVDGAASRETKQGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 479
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 480 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 539
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 540 GIGGNEQVDKLVSSGIRK 557
>gi|306416410|gb|ADM87052.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|283444786|gb|ADB20266.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E ++ + KV +
Sbjct: 592 YVDGAANRET-KMGKAGYITDRGRQKVVTISETTNQKTELQAIQL----ALQDSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIR 708
>gi|256011014|gb|ACU55363.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGXQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984678|gb|ACU46411.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGASNRETKIGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVXQIIEQLIKKDKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|212383218|gb|ACJ25900.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 591 YVDGAANRETKAGKAGYVTDRGRQKVINLTETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|187371897|gb|ACD02797.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 608 YVDGASNRETKIGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 663 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRK 725
>gi|15221666|ref|NP_173819.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 535
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 38/140 (27%), Gaps = 15/140 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYP 66
DGA GNPG G +L + G TNN E A I L K
Sbjct: 219 IEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGY 278
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS V Q +W+ N + + V
Sbjct: 279 KNIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKC---------VSFE--I 327
Query: 127 GHAGNQENEKVDRIARNAAV 146
H N D A A
Sbjct: 328 SHVLRNLNADADEQANLAVR 347
>gi|71024129|ref|XP_762294.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
gi|46101799|gb|EAK87032.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
Length = 345
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ S+ +V + WI GH NE+ D +A+ AA
Sbjct: 144 QMSSGRRVTVVWIPGHRDIPGNERADTLAQGAAD 177
>gi|325635901|gb|ADZ33696.1| pol protein [Human immunodeficiency virus 1]
gi|325636111|gb|ADZ33879.1| pol protein [Human immunodeficiency virus 1]
gi|325636118|gb|ADZ33885.1| pol protein [Human immunodeficiency virus 1]
gi|325636126|gb|ADZ33892.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSMTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRKI 716
>gi|322711772|gb|EFZ03345.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1090
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 29/124 (23%), Gaps = 9/124 (7%)
Query: 22 GPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80
G G+G ++ + SG A++ L A
Sbjct: 586 GVAGYGYIIHQNNRPVLDGSGRLGPAEVFDAAANGALEGLWA--------AVGHPQATAN 637
Query: 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
+ A A + WI GH NE+ D +
Sbjct: 638 EIVVCLDNLAAATGLRGTSSDSSQAAFLEFQDMALAHGNTTVRWIPGHTNIAGNEQADAL 697
Query: 141 ARNA 144
A+
Sbjct: 698 AKAG 701
>gi|331242530|ref|XP_003333911.1| hypothetical protein PGTG_15334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312901|gb|EFP89492.1| hypothetical protein PGTG_15334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 475
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 29/140 (20%), Gaps = 3/140 (2%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
H + +TDG+ G G V + + L+
Sbjct: 275 HTDTLLVFTDGSAHPKEGLGAAAV---TADGLSVQMAFLGPPEIASNFECELVGIRLGLE 331
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + + + + + W
Sbjct: 332 MGRVLTTEAGFRQIVLLTDSQAAIERMRRPGLPKSGQYLLSQIQEAAEMIPPFVYITVRW 391
Query: 125 IKGHAGNQENEKVDRIARNA 144
GH G N+ D A A
Sbjct: 392 CPGHVGIAGNKLADAKAGEA 411
>gi|255984906|gb|ACU46525.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNXGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRKI 159
>gi|160337084|gb|ABX25830.1| pol protein [Feline immunodeficiency virus]
Length = 1148
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G P + + E +N R E+MA + AL A ++
Sbjct: 623 YIDGGRKRGQPARAAY------WTNKGKWEIMTIEGSNQRAEVMALLMALKAGGEEMNII 676
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS Y+ K + E + + + W+ GH G
Sbjct: 677 --TDSQYIINVL--------------KQKPDLMEGIWQEVIEEMEKKIGIFIDWVPGHKG 720
Query: 131 NQENEKVDRI 140
N +VD++
Sbjct: 721 IPGNTEVDQL 730
>gi|159031771|dbj|BAF91857.1| polyprotein [Human immunodeficiency virus 1]
Length = 539
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 412 YVDGAANRETRLGKAGYVTDKGRQKVVSMXDTTNQKTELQAINLALQ-----DSGSEVNI 466
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 467 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLSWVPAHKGI 513
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 514 GGNEQVDKLVSNGIRK 529
>gi|115334363|dbj|BAF33108.1| Pol [Human immunodeficiency virus 1]
Length = 998
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 587 YVDGAANRETKIGKAGYVTDRGRQKVVSITETTNQKTELQAIQLALQ-----DSGSEVNI 641
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 642 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 688
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 689 GGNEQVDKLVSNGIRK 704
>gi|93210834|gb|ABF00795.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|38892655|gb|AAR27659.1| pol protein [Human immunodeficiency virus 1]
gi|212382637|gb|ACJ25636.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + ++KI+S E T N+ + AI+ +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRNRQKIVSLTE---TTNQKAELQAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSKGIRK 709
>gi|37683008|gb|AAQ98567.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|18312884|ref|NP_559551.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
gi|18160375|gb|AAL63733.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
Length = 191
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 7/140 (5%)
Query: 6 LREVHAYTDGACSG-NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+R + + DGAC NPG G G E + GE A A
Sbjct: 1 MRCIQLFFDGACEPVNPG--GIGAYGFAAFDEGREAYGEGGVVCFGERWCTNNYAEYAGL 58
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
F +Q + + + + + W
Sbjct: 59 VKALEWALAGGFDCVSAFGDSQLVVRQMLGLYAVRAPNLKPLHERALELSRGFRRFSISW 118
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ +EN + D ++ A
Sbjct: 119 VP----REENSRADYYSKRA 134
>gi|306478349|gb|ADM89549.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVXDXGRQKVVHLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306416300|gb|ADM86997.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 555
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 436 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 488
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 489 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 535
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 536 GIGGNEQVDKLVSSGIRK 553
>gi|306416264|gb|ADM86979.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416192|gb|ADM86943.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011556|gb|ACU55634.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++KI+S E ++ + J +V +
Sbjct: 599 YVDGAANRETKIGKAGYV-TDRGRQKIVSLTETTNQKTELQAI----QJALQDSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|255984604|gb|ACU46374.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKIXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|212382627|gb|ACJ25631.1| pol protein [Human immunodeficiency virus 1]
Length = 915
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|186940913|dbj|BAG31052.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|37221312|gb|AAQ89787.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEZLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|885605|gb|AAC55682.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSVTDTTNQKTKLQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416398|gb|ADM87046.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|212383243|gb|ACJ25911.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANKETKKGKAGYVTDRGRQKIVSLAETTNQKTELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|212382598|gb|ACJ25617.1| pol protein [Human immunodeficiency virus 1]
Length = 907
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQGQPDKSE-------------SEVVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|86753453|gb|ABD14891.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKIVS----INETTNQKAELQAIHLALQDSE-SEVNV 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|321472863|gb|EFX83832.1| hypothetical protein DAPPUDRAFT_100218 [Daphnia pulex]
Length = 554
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + YTDG+ + K ++++ K TN+ + AI+
Sbjct: 268 RNPNTNHLEVYTDGSVCETTKTASCAFHIPKKKEDEVW--LLKNFTNSFNAELYAIRQAL 325
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ + S I+ + TS+ +T ++
Sbjct: 326 YHLNKYEMDS------TIQPPSSLIQNLPFKQYPTSNGRT-----------------RIT 362
Query: 122 LYWIKGHAGNQENEKVDRIAR 142
L WI HAG NE D++A
Sbjct: 363 LTWIPSHAGIVGNEIADQLAT 383
>gi|308176444|ref|YP_003915850.1| reverse transcriptase [Arthrobacter arilaitensis Re117]
gi|307743907|emb|CBT74879.1| possible reverse transcriptase [Arthrobacter arilaitensis Re117]
Length = 341
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V AYTDG+ N G + IS E A+ ALT
Sbjct: 183 VIAYTDGSVPRNRKFRSAGAMVTSQGHWACAISPKHYVQDTLLAETTGALLALTHAPLES 242
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +++DS + K + ++ Q+ + + + W++G
Sbjct: 243 DLTIFSDSRALMKAVNDLVQGRQRTVKVHHELRESLELRTGRTRAR----------WVRG 292
Query: 128 HAGNQENEKVDRIA 141
H GN+ NE +R+A
Sbjct: 293 HDGNRHNEAANRMA 306
>gi|256010791|gb|ACU55252.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRZTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 705 GGNEQVDKLVSQGIRK 720
>gi|212383241|gb|ACJ25910.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E + ++ + +V +
Sbjct: 596 YVDGAANRET-KAGKAGYVTDRGRQKVMTLTETTNQKSELQAIQL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|156254407|gb|ABU62693.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 103 GGNEHVDKLVSAGIRK 118
>gi|145606328|ref|XP_365687.2| hypothetical protein MGG_09683 [Magnaporthe oryzae 70-15]
gi|145014022|gb|EDJ98663.1| hypothetical protein MGG_09683 [Magnaporthe oryzae 70-15]
Length = 1570
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 1386 EVRVRWCPGHQGIPGNDRADELAKAG 1411
>gi|114431116|dbj|BAF31370.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKKKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|67552977|gb|AAY68576.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 591 YVDGAANRETKAGKAGYVTDRGRQKVINLTETTNQKTELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|56131601|gb|AAV80381.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI+S E TTN + EL A L +V +
Sbjct: 592 YVDGAANRET-KAGKAGYVTDKGRQKIVSLTE--TTNQKAELQAV--QLALQDSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVAQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682781|gb|AAQ98366.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|37682579|gb|AAQ98261.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAANRETKIGKAGYVTDRGRQKIVTLTETTNQKAELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|13095104|gb|AAK12137.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 541 GIGGNEQADKLVSAGIRK 558
>gi|325636310|gb|ADZ34049.1| pol protein [Human immunodeficiency virus 1]
Length = 1032
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|289469902|gb|ADC96606.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|256011332|gb|ACU55522.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + +G++K++S + T N+ + AI +V
Sbjct: 600 YVDGASXRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKAELXAIHLALQDSG-SEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 700 GIGGNEQVDKLVSSGIRK 717
>gi|256011172|gb|ACU55442.1| pol protein [Human immunodeficiency virus 1]
Length = 867
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTXRGXQKVVSLTXXTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010958|gb|ACU55335.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S +TTN + EL A AL +V +
Sbjct: 600 YVDGAANRET-KAGRAGYVTSKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLTWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|255984418|gb|ACU46281.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDKGRQKVVSLXDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238585937|ref|XP_002391017.1| hypothetical protein MPER_09617 [Moniliophthora perniciosa FA553]
gi|215455151|gb|EEB91947.1| hypothetical protein MPER_09617 [Moniliophthora perniciosa FA553]
Length = 336
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
W+KGH G + NEK D++A ++ I
Sbjct: 31 FQWVKGHDGIEGNEKADQMASEGREKEQSDI 61
>gi|156254393|gb|ABU62686.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 1 YVDGAANRETRIGKAGYVTNKGRQKVVT----INDTTNQKTELEAIHLALQDSGL-EVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGVRK 118
>gi|51572105|gb|AAU06754.1| pol protein [Human immunodeficiency virus 1]
Length = 1020
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E + ++ + +V +
Sbjct: 596 YVDGAANRET-KAGKAGYVTDRGRQKVMTLTETTNQKSELQAIQL----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306416386|gb|ADM87040.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRESKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416304|gb|ADM86999.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSDSDVVNQIIEELIKKDRVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288558509|dbj|BAI68312.1| polyprotein [Human immunodeficiency virus 1]
Length = 323
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G+ K++S E ++ + +V
Sbjct: 191 YVDGAASRETKLGKAGY---VTDRGRRKVVSLAETTNQKTELQAIXL----ALQDSGSEV 243
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 244 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 290
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 291 GIGGNEQVDKLVSSGIRK 308
>gi|212532171|ref|XP_002146242.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210071606|gb|EEA25695.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 358
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
++DG+ N G G GV L+ ++ E + G + M + +A++
Sbjct: 32 TLWSDGSRQDN-GRTGAGVALQIVPEAPWEHLELPMGTGFEVFDAELMGVASALEWALER 90
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
P + + D+ K +++ + V +
Sbjct: 91 HLPGPIHVLLDAQNAIKRLQSTEPG---------AGQSLALRAHMAASRLRLSGRPVTIQ 141
Query: 124 WIKGHAGNQENEKVDR 139
W+ GH G + NE+ D+
Sbjct: 142 WVPGHNGVEGNEQADQ 157
>gi|190411412|gb|ACE78477.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|190411392|gb|ACE78459.1| pol protein [Human immunodeficiency virus 1]
gi|190411402|gb|ACE78468.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|49574375|gb|AAT66857.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S + T N+ + AI +V +
Sbjct: 441 YVDGAANR-GTKLGKAGYVTDKGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|29367081|gb|AAO22475.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ Y + K +ETTN + EL A AL +V
Sbjct: 609 YVDGAANRNSKEGKAGY-----YTSRGKSKVVALEETTNQKAELTAIKMALQDSGP--RV 661
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y S + N + + ++ L W+ H
Sbjct: 662 NIVTDSQYALGILS-------------AAPDQSDNPIVREIIELMIGKEEIYLSWVPAHK 708
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 709 GIGGNEQIDKLVSKGIRQ 726
>gi|156254417|gb|ABU62698.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETRLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + E + KV L W+ H G
Sbjct: 56 VTDSQYGLGIIQAQPDRSESELVSK-------------IIEELIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|86371876|gb|ABC94988.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASSRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|22596273|gb|AAN03061.1|AF457056_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDITNQKTELQAIKLALQ-----DSGQKVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEQVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|49574278|gb|AAT66810.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTGLQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNERVDKLVSSGIRK 558
>gi|327458335|gb|AEA76607.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|222428384|gb|ACM50037.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAVYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382764|gb|ACJ25691.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRETKIGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 692 GGNEQVDKLVSRGIR 706
>gi|93210893|gb|ABF00848.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSGVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|38491880|gb|AAR22249.1| pol protein [Human immunodeficiency virus 1]
gi|282598063|gb|ADA83303.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAHPDKSESEIVHQIIEQLIQKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37682958|gb|AAQ98522.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEDLITKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|15281481|gb|AAK94265.1|AF361877_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|15281451|gb|AAK94238.1|AF361874_2 pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKVGKAGYVTDRGRQKIVTLAETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|11993207|gb|AAG42639.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTESNNRKTELHRIHL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|7715903|gb|AAF68193.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTESNNRKTELHRIHL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|3511261|gb|AAC33783.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|68521985|gb|AAY98587.1| pol protein [Human immunodeficiency virus 1]
gi|212383265|gb|ACJ25921.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KIIS E + + +V +
Sbjct: 590 YVDGAANRETKI-GRAGYITDKGRQKIISLTETTNQKTELRAIQL----ALQDSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 692 GGNEQVDKLVSNGIRK 707
>gi|312601858|gb|ADQ92486.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIVPLMDTTNQKTELQAIHLALQ-----DSEREVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIQKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|306416450|gb|ADM87072.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416184|gb|ADM86939.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256010773|gb|ACU55243.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKXGKAGYVTDRGRQKVVTITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|170778901|gb|ACB36850.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|63098296|gb|AAY32348.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANKETKKGKAGYVTDRGRQKIVSLAETTNQKTELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|49887108|gb|AAT68795.1| pol protein [Simian immunodeficiency virus]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + TTN + EL A + AL +
Sbjct: 601 YVDGAANRESKLGKAGYVTEWGKQSV---KCLENTTNQKAELEAILLALEEGPSKMNI-- 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + ++ L W+ H G
Sbjct: 656 VTDSQYALGIILEHPSETEHKIVEK-------------VIQALQGKEQIYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
N++VD++
Sbjct: 703 GGNDQVDKLVSKGIRRI 719
>gi|14091538|gb|AAK53788.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + + + ETTN + EL A + AL +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQRVVS---LTETTNQKTELHAILLALQDSG--SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|14091502|gb|AAK53770.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + + + ETTN + EL A + AL +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQRVVS---LTETTNQKTELHAILLALQDSG--SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|49574396|gb|AAT66867.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKAVPLTDATNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|82571380|gb|ABB84140.1| pol protein [Human immunodeficiency virus 1]
gi|212383339|gb|ACJ25948.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGASNRETKMGKAGYVTDRGRQKIITLSETTNQKAELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|68522125|gb|AAY98713.1| pol protein [Human immunodeficiency virus 1]
gi|212383297|gb|ACJ25933.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDKGRQKIVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|16118282|gb|AAL12659.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLKDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458273|gb|AEA76576.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E TTN + EL A AL +
Sbjct: 441 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTE--TTNQKAELQAIHLALQDSGLEANI-- 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477621|gb|ADM89185.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSAGIRK 558
>gi|288558529|dbj|BAI68321.1| polyprotein [Human immunodeficiency virus 1]
Length = 329
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 193 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 245
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 246 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKDKVYLSWVPAHK 292
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 293 GIGGNEQVDKLVSSGIRKI 311
>gi|224116256|ref|XP_002197263.1| PREDICTED: similar to pol-like protein ENS-3, partial [Taeniopygia
guttata]
Length = 772
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 11 AYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETT-NNRMELMAAIKALTALKYPCK 68
+TDG+C W + + + GE ++ ++ + + + K
Sbjct: 435 LFTDGSCRIVGMKRKWKAAVWSPTRQVAEATEGEGGSSQLAELKAVQLALDIAEREKWPK 494
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ LYTDS V W+++W++ W+ K + D W + V + + H
Sbjct: 495 LYLYTDSWMVANALWGWLERWKKANWQRR-GKPIWAADEWKDIATRVEKLSVKVRHVDAH 553
Query: 129 AG-------NQENEKVDRIAR 142
+Q N++VD+ A+
Sbjct: 554 VPKSRANKEHQHNQQVDQAAK 574
>gi|37683037|gb|AAQ98593.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + ++ + E + KV L W+ H
Sbjct: 649 NIVTDSQYVLGIL-------------QAQPDKSESELVSQIIEELIRKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221434|gb|AAQ89846.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|37221432|gb|AAQ89845.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|14582835|gb|AAK69674.1|AF349680_2 pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + K + TTN + EL A + AL ++
Sbjct: 614 YVDGAANRNSKLGKAGYV---TDRGKEKVKELENTTNQKAELGAVLLALKDSGKRVNIVT 670
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ + T ++ + + + +V L W+ H G
Sbjct: 671 DSRHVFGILAG---------------SPDTSESPLVQQIIEQMIGKEEVYLSWVPAHKGI 715
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 716 GGNEQVDKLVSQGIRQ 731
>gi|306416344|gb|ADM87019.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416412|gb|ADM87053.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416468|gb|ADM87081.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288187793|gb|ADC42385.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|159031787|dbj|BAF91865.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMXDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|115490893|gb|ABI97966.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRDTKIGKAGYVTDKGRQKIITLTETTNQKAELQAIQLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 654 ITDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|115334443|dbj|BAF33180.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIKLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|112361437|gb|ABI15749.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491687|gb|AAR22077.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E T N+ + AI +V +
Sbjct: 600 YVDGASNRET-KMGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 655 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 702 GGNEQVDKLVSNGIRK 717
>gi|16306477|gb|AAG22546.2| type 1 reverse transcriptase [Human immunodeficiency virus 1]
Length = 562
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDRGRQKAVSITDTTNQKTELQAIYLALQ-----DSGSEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRKI 561
>gi|11321007|gb|AAG34000.1| pol protein [Human immunodeficiency virus 1]
gi|13172880|gb|AAK14228.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 593 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|11321027|gb|AAG34018.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 593 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|77416885|sp|P05961|POL_HV1MN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1441
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1034 YVDGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1088
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1089 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1135
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1136 GGNEQVDKLVSAGIRK 1151
>gi|325634982|gb|ADZ32913.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|325171022|ref|YP_004250997.1| hypothetical protein ViPhICP1_gp056 [Vibrio phage ICP1]
gi|323512417|gb|ADX87872.1| hypothetical protein [Vibrio phage ICP1]
gi|323512645|gb|ADX88099.1| hypothetical protein TUST1-191_00265 [Vibrio phage ICP1_2006_D]
gi|323512873|gb|ADX88326.1| hypothetical protein TUST1-182_00265 [Vibrio phage ICP1_2006_C]
gi|323513101|gb|ADX88553.1| hypothetical protein TUST1-159_00265 [Vibrio phage ICP1_2006_B]
gi|323513328|gb|ADX88779.1| hypothetical protein TUST1-17_00265 [Vibrio phage ICP1_2006_A]
gi|323513555|gb|ADX89005.1| hypothetical protein TUST1-15_00265 [Vibrio phage ICP1_2005_A]
gi|323513788|gb|ADX89237.1| hypothetical protein TUST1-2_00275 [Vibrio phage ICP1_2001_A]
gi|323514016|gb|ADX89464.1| hypothetical protein TUST1-10_00260 [Vibrio phage ICP1_2004_A]
Length = 66
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
T +K VKN +L + + + +H V + H+G NE DR+A A+ K +
Sbjct: 4 FTQNKGEVKNKELIIDLYKTTQKHHVTWVKVAAHSGVYFNELADRLACEASAKSKEE 60
>gi|306416234|gb|ADM86964.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594714|gb|ADL59545.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI V
Sbjct: 1 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SAV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAHPDKSESEIVNQIIELLIQKEKVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIRK 118
>gi|256010721|gb|ACU55217.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGASNRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEELIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|256252300|dbj|BAH97551.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELINKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|156254349|gb|ABU62664.1| RNase H [Human immunodeficiency virus 1]
gi|156254361|gb|ABU62670.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKAGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|145605058|ref|XP_365355.2| hypothetical protein MGG_13698 [Magnaporthe oryzae 70-15]
gi|145012931|gb|EDJ97572.1| hypothetical protein MGG_13698 [Magnaporthe oryzae 70-15]
Length = 278
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
V + W H G + NEK DR+A A
Sbjct: 203 NVRIRWCPWHKGIEGNEKADRLADEGAK 230
>gi|86371839|gb|ABC94955.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 696 GIGGNEKVDKLVSSGIRK 713
>gi|55139253|gb|AAV41277.1| pol protein [Human immunodeficiency virus 1]
gi|212383144|gb|ACJ25868.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI+ +V
Sbjct: 593 YVDGAANRETTLGKAGY---VTDRGRQKIVSLSE---TTNQKAELQAIQLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 693 GIGGNEQVDKLVSKGIRK 710
>gi|7715898|gb|AAF68189.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTESNNRKTELHRIHL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|325636279|gb|ADZ34022.1| pol protein [Human immunodeficiency virus 1]
gi|325636302|gb|ADZ34042.1| pol protein [Human immunodeficiency virus 1]
gi|325636323|gb|ADZ34060.1| pol protein [Human immunodeficiency virus 1]
gi|325636331|gb|ADZ34067.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|289187185|gb|ADC92172.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187183|gb|ADC92171.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187179|gb|ADC92169.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187177|gb|ADC92168.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187171|gb|ADC92165.1| pol protein [Human immunodeficiency virus 1]
gi|289187187|gb|ADC92173.1| pol protein [Human immunodeficiency virus 1]
gi|289187189|gb|ADC92174.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187169|gb|ADC92164.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187163|gb|ADC92161.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187151|gb|ADC92155.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187145|gb|ADC92152.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187141|gb|ADC92150.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187137|gb|ADC92148.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187135|gb|ADC92147.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187123|gb|ADC92141.1| pol protein [Human immunodeficiency virus 1]
gi|289187129|gb|ADC92144.1| pol protein [Human immunodeficiency virus 1]
gi|289187147|gb|ADC92153.1| pol protein [Human immunodeficiency virus 1]
gi|289187161|gb|ADC92160.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187121|gb|ADC92140.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187111|gb|ADC92135.1| pol protein [Human immunodeficiency virus 1]
gi|289187153|gb|ADC92156.1| pol protein [Human immunodeficiency virus 1]
gi|289187165|gb|ADC92162.1| pol protein [Human immunodeficiency virus 1]
gi|289187167|gb|ADC92163.1| pol protein [Human immunodeficiency virus 1]
gi|289187181|gb|ADC92170.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187105|gb|ADC92132.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187101|gb|ADC92130.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187099|gb|ADC92129.1| pol protein [Human immunodeficiency virus 1]
gi|289187103|gb|ADC92131.1| pol protein [Human immunodeficiency virus 1]
gi|289187109|gb|ADC92134.1| pol protein [Human immunodeficiency virus 1]
gi|289187125|gb|ADC92142.1| pol protein [Human immunodeficiency virus 1]
gi|289187139|gb|ADC92149.1| pol protein [Human immunodeficiency virus 1]
gi|289187157|gb|ADC92158.1| pol protein [Human immunodeficiency virus 1]
gi|289187159|gb|ADC92159.1| pol protein [Human immunodeficiency virus 1]
gi|289187173|gb|ADC92166.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187095|gb|ADC92127.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187091|gb|ADC92125.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187087|gb|ADC92123.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187072|gb|ADC92116.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187054|gb|ADC92107.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187052|gb|ADC92106.1| pol protein [Human immunodeficiency virus 1]
gi|289187056|gb|ADC92108.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187050|gb|ADC92105.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187048|gb|ADC92104.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187046|gb|ADC92103.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187040|gb|ADC92100.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187036|gb|ADC92098.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187014|gb|ADC92087.1| pol protein [Human immunodeficiency virus 1]
gi|289187016|gb|ADC92088.1| pol protein [Human immunodeficiency virus 1]
gi|289187018|gb|ADC92089.1| pol protein [Human immunodeficiency virus 1]
gi|289187022|gb|ADC92091.1| pol protein [Human immunodeficiency virus 1]
gi|289187026|gb|ADC92093.1| pol protein [Human immunodeficiency virus 1]
gi|289187028|gb|ADC92094.1| pol protein [Human immunodeficiency virus 1]
gi|289187030|gb|ADC92095.1| pol protein [Human immunodeficiency virus 1]
gi|289187032|gb|ADC92096.1| pol protein [Human immunodeficiency virus 1]
gi|289187034|gb|ADC92097.1| pol protein [Human immunodeficiency virus 1]
gi|289187042|gb|ADC92101.1| pol protein [Human immunodeficiency virus 1]
gi|289187044|gb|ADC92102.1| pol protein [Human immunodeficiency virus 1]
gi|289187058|gb|ADC92109.1| pol protein [Human immunodeficiency virus 1]
gi|289187062|gb|ADC92111.1| pol protein [Human immunodeficiency virus 1]
gi|289187064|gb|ADC92112.1| pol protein [Human immunodeficiency virus 1]
gi|289187066|gb|ADC92113.1| pol protein [Human immunodeficiency virus 1]
gi|289187068|gb|ADC92114.1| pol protein [Human immunodeficiency virus 1]
gi|289187070|gb|ADC92115.1| pol protein [Human immunodeficiency virus 1]
gi|289187075|gb|ADC92117.1| pol protein [Human immunodeficiency virus 1]
gi|289187077|gb|ADC92118.1| pol protein [Human immunodeficiency virus 1]
gi|289187079|gb|ADC92119.1| pol protein [Human immunodeficiency virus 1]
gi|289187081|gb|ADC92120.1| pol protein [Human immunodeficiency virus 1]
gi|289187089|gb|ADC92124.1| pol protein [Human immunodeficiency virus 1]
gi|289187097|gb|ADC92128.1| pol protein [Human immunodeficiency virus 1]
gi|289187117|gb|ADC92138.1| pol protein [Human immunodeficiency virus 1]
gi|289187127|gb|ADC92143.1| pol protein [Human immunodeficiency virus 1]
gi|289187133|gb|ADC92146.1| pol protein [Human immunodeficiency virus 1]
gi|289187149|gb|ADC92154.1| pol protein [Human immunodeficiency virus 1]
gi|289187155|gb|ADC92157.1| pol protein [Human immunodeficiency virus 1]
gi|289187175|gb|ADC92167.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187012|gb|ADC92086.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186992|gb|ADC92076.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186990|gb|ADC92075.1| pol protein [Human immunodeficiency virus 1]
gi|289186996|gb|ADC92078.1| pol protein [Human immunodeficiency virus 1]
gi|289186998|gb|ADC92079.1| pol protein [Human immunodeficiency virus 1]
gi|289187000|gb|ADC92080.1| pol protein [Human immunodeficiency virus 1]
gi|289187002|gb|ADC92081.1| pol protein [Human immunodeficiency virus 1]
gi|289187004|gb|ADC92082.1| pol protein [Human immunodeficiency virus 1]
gi|289187006|gb|ADC92083.1| pol protein [Human immunodeficiency virus 1]
gi|289187008|gb|ADC92084.1| pol protein [Human immunodeficiency virus 1]
gi|289187020|gb|ADC92090.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186986|gb|ADC92073.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186982|gb|ADC92071.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186980|gb|ADC92070.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186968|gb|ADC92064.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186964|gb|ADC92062.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186942|gb|ADC92051.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ KV +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAKVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186934|gb|ADC92047.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186932|gb|ADC92046.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186930|gb|ADC92045.1| pol protein [Human immunodeficiency virus 1]
gi|289186946|gb|ADC92053.1| pol protein [Human immunodeficiency virus 1]
gi|289186950|gb|ADC92055.1| pol protein [Human immunodeficiency virus 1]
gi|289186974|gb|ADC92067.1| pol protein [Human immunodeficiency virus 1]
gi|289187083|gb|ADC92121.1| pol protein [Human immunodeficiency virus 1]
gi|289187085|gb|ADC92122.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186928|gb|ADC92044.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288558517|dbj|BAI68316.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 245 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 292 GIGGNEQVDKLVSKGIRK 309
>gi|288187770|gb|ADC42375.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|257152882|emb|CAT00582.1| gag/pol precursor [HIV-1 M_97CD.KFE267]
Length = 1429
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1022 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIHLALQ-----DSGSEVNI 1076
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1077 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 1123
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1124 GGNEQVDKLVSNGIRK 1139
>gi|256011522|gb|ACU55617.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984226|gb|ACU46185.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKXGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|212382666|gb|ACJ25649.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVSLSETTNQKTELQAVQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|334802|gb|AAA91940.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1041
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+C+ G G+ + +GK K+ + ++TTN + EL A AL +
Sbjct: 629 YVDGSCNRQSKEGKAGY---ITDRGKNKVKA--LEQTTNQQAELEAFAMALADSGPKANI 683
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
DS YV + + + + + E + + + W+ H
Sbjct: 684 --VVDSQYVMGIITGQPTESE-------------SKLVNQIIEEMIKKEAIYVAWVPAHK 728
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD +
Sbjct: 729 GIGGNQEVDHLVSQGIRQ 746
>gi|86753643|gb|ABD15062.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKVVSLSETTNQKTELQAVQLALQ-----DSGSEVSI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPGKSESELVNQIIEQLIRKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|326370657|gb|ADZ56436.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVISLNDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325638773|gb|ADZ36132.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|302594736|gb|ADL59556.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELQAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKDKVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSTGIRK 118
>gi|256011616|gb|ACU55664.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256252607|dbj|BAH97560.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELINKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|57869636|gb|AAW57679.1| pol protein [Human immunodeficiency virus 1]
Length = 995
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 588 YVDGAANRETKIGKAGYVTDRGRQKVVSITETTNQKTELQAIQLALQ-----DSGSEVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 643 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 689
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 690 GGNEQVDKLVSSGIRK 705
>gi|325638816|gb|ADZ36168.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636252|gb|ADZ33999.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 600 YVDGAANRETKSGKAGYVTNKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|325634777|gb|ADZ32734.1| pol protein [Human immunodeficiency virus 1]
gi|325634785|gb|ADZ32741.1| pol protein [Human immunodeficiency virus 1]
gi|325636257|gb|ADZ34003.1| pol protein [Human immunodeficiency virus 1]
gi|325636287|gb|ADZ34029.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|312601994|gb|ADQ92552.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 606 YVDGAASRETKSGKAGYVTDRGRQKVVHITDTTNQKTELQAIYLALQ-----DSGPEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKIYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 708 GGNEQIDKLVSAGIRKI 724
>gi|306416444|gb|ADM87069.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416392|gb|ADM87043.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416322|gb|ADM87008.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416194|gb|ADM86944.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416260|gb|ADM86977.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416388|gb|ADM87041.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594738|gb|ADL59557.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN R EL A AL +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGKQKVIT---LTETTNQRTELQAIHLALQDSG--SEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAHPDQSE-------------SDLVNQIIEQLIKKEKVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|256011484|gb|ACU55598.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVVH----LTDTTNQKTELEAIHLALQDSGV-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382576|gb|ACJ25609.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNV 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|157885887|emb|CAO99182.1| pol protein [Human immunodeficiency virus type 1 04CD.FR.KZS]
Length = 1001
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|63014478|gb|AAY25649.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E ++ + +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|55139288|gb|AAV41309.1| pol protein [Human immunodeficiency virus 1]
gi|212383164|gb|ACJ25877.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKIVHLSETTNQKTELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 652 VTDSQYALGIIQTQPDKSE-------------SELVNQIIEQLINKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|11321017|gb|AAG34009.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 593 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|1537052|gb|AAC55460.1| pol [Human immunodeficiency virus 1]
Length = 1008
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 601 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 653
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 654 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|306416206|gb|ADM86950.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLXE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEDLIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|284192193|gb|ADB82816.1| pol protein [Simian immunodeficiency virus]
Length = 578
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + TTN + EL A + AL KV +
Sbjct: 282 YVDGAANRESREGKAGYISERG---KTSVKALENTTNQKAELTAVLMALEDSGE--KVNI 336
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV ++ + + ++ K +V L W+ H G
Sbjct: 337 VTDSQYVLNILTEQPTTTEHEIVEKIIQQLQKKQ-------------EVYLQWVPAHKGM 383
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 384 GGNEQIDKLVSRGIRKI 400
>gi|256011656|gb|ACU55684.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIRKI 719
>gi|256011136|gb|ACU55424.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTDRGRQKVVSIADTTNQKTELQAIXLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSNIIEELIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|224154489|ref|XP_002337484.1| predicted protein [Populus trichocarpa]
gi|222839453|gb|EEE77790.1| predicted protein [Populus trichocarpa]
Length = 228
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 1 MDSKHL-REVHAYTDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAI 57
M S + + DG+ G PGP G G +LR + I S +N EL A +
Sbjct: 81 MWSPPMINSLKWNVDGSSLGKPGPSGIGGVLRNHHGHLLGIFSVPVGILDSNIAELRAIV 140
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
KA+ C + H K ++ + +
Sbjct: 141 KAIELSASNCLFH------HQHLIIESDSVNAISWMNKPHNRPWKHHNLFSSVNRLKAYF 194
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ H + N D +A+
Sbjct: 195 GSITF----SHIFRESNCMADCMAKQGVQ 219
>gi|74315723|gb|ABA02451.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGKQKIITIQDTTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSRGIRK 709
>gi|321456607|gb|EFX67710.1| hypothetical protein DAPPUDRAFT_261174 [Daphnia pulex]
Length = 268
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S +P + + KE G T A
Sbjct: 93 SIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 152
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++Y+DSS S + + S+ + L W
Sbjct: 153 CPPEAIIYSDSSSAITAISSNSL----------SENEAITAIREIIASLKSSGTRTRLTW 202
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 203 IPSHTGIEGNERTDRLA 219
>gi|281191147|gb|ADA57073.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANKETKMGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 650 VTDSQYALGIIQTQPDKSE-------------SELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSQGIRK 712
>gi|255984878|gb|ACU46511.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDXGRQKXVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|237874792|gb|ACR27159.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGASSKETKRGNAGYVTDRGRQKVVSLTETTNQKAELQAIQLALQ-----DSGPEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIQKEKIYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRKI 713
>gi|212382572|gb|ACJ25607.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E ++ + +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKTVSITETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSKGIRK 709
>gi|212382552|gb|ACJ25599.1| pol protein [Human immunodeficiency virus 1]
Length = 910
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRDTKMGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGPEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIRKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 692 GGNEQVDKLVSNGIRK 707
>gi|86277558|gb|ABC88283.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S E ++ + +V +
Sbjct: 596 YVDGASNRET-KMGKAGYVTDRGRQKAVSLTETTNQKAELQAIQI----ALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|32344837|gb|AAM82293.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRE-NKMGKAGYVTDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|46486655|gb|AAS98759.1| pol protein [Human immunodeficiency virus 1]
gi|57338550|gb|AAW49346.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ-----DSGSEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|77416900|sp|P05962|POL_HV2NZ RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1461
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + ++TTN + EL A ALT +++
Sbjct: 1049 YTDGSCNRQSKEGKAGYITDRGRDRV---KVLEQTTNQQAELEAFAMALTDSGPKANIIV 1105
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 1106 --DSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAIYVAWVPAHKGI 1150
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1151 GGNQEVDHLVSQGIRQ 1166
>gi|306416432|gb|ADM87063.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416248|gb|ADM86971.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416242|gb|ADM86968.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416178|gb|ADM86936.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416370|gb|ADM87032.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011572|gb|ACU55642.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLADTTNQKTELQAIHXALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37682811|gb|AAQ98393.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYVLGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|17902105|gb|AAL47776.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|14091532|gb|AAK53785.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|23194120|gb|AAN15028.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALR-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|25166761|gb|AAN73556.1|AF484491_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E ++ + +V +
Sbjct: 1020 YVDGAANRET-KMGKAGYVTDRGRQKIISLTETTNQKAELQAIQL----ALQDSGSEVNV 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIKKERVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|1857261|gb|AAB54104.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+I+ E T N+ + AI +V
Sbjct: 596 YVDGAANRETKQGKAGY---ITDKGRQKVITLTE---TTNQKTELEAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|83656823|gb|ABC39618.1| pol protein [Human immunodeficiency virus 2]
Length = 1032
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 620 YTDGSCNRQSKEGKAGYVTDRGRDKV---KVLEQTTNQQSELEAFAMALTDSGPKANIIV 676
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 677 --DSQYVMGIVAGQPTESE-------------NKIVNQIIEEMIKKEAIYVAWVPAHKGI 721
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 722 GGNQEVDHLVSQGIRQ 737
>gi|74099686|gb|AAZ28900.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETPNQKTELQAIYLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VPDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|327458293|gb|AEA76586.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDXGXQKVVSXTDTTNQKTELQAIXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRKI 559
>gi|325638811|gb|ADZ36164.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477601|gb|ADM89175.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIIPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|288188476|gb|ADC42712.1| pol protein [Human immunodeficiency virus 1]
Length = 664
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVKAGIRK 657
>gi|212382710|gb|ACJ25667.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYITDRGRQKIVSLTETTNQKTELQAIQI----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKEIRK 709
>gi|57901099|gb|AAW57864.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|14091510|gb|AAK53774.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NVVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|28827201|gb|AAO46154.1| pol protein [Recombinant M-MuLV/RaLV retrovirus]
Length = 1204
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 643 YTDGSSYLVNGERKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 699
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTD Y + +Q+ G TS+ K +KN + A ++ + GH
Sbjct: 700 NVYTDRHYAFATAHIHGEIYQRRGLLTSEGKDIKNKTEIQALLAALFLPKRLRIIHCPGH 759
Query: 129 A-GN----QENEKVDRIARNAAVSFK 149
G+ + N D A AA+ +
Sbjct: 760 QKGHSPEARGNRLADVSAPEAAMGTQ 785
>gi|28827195|gb|AAO46150.1| pol protein [Recombinant M-MuLV/RaLV retrovirus]
Length = 1204
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ N G V + I + T+ + + A+ + ++
Sbjct: 643 YTDGSSYLVNGERKAGAAV---TTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRL 699
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTD Y + +Q+ G TS+ K +KN + A ++ + GH
Sbjct: 700 NVYTDRHYAFATAHIHGEIYQRRGLLTSEGKDIKNKTEIQALLAALFLPKRLRIIHCPGH 759
Query: 129 A-GN----QENEKVDRIARNAAVSFK 149
G+ + N D A AA+ +
Sbjct: 760 QKGHSPEARGNRLADVSAPEAAMGTQ 785
>gi|60651878|gb|AAX32968.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIISLPHTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|71018711|ref|XP_759586.1| hypothetical protein UM03439.1 [Ustilago maydis 521]
gi|46099344|gb|EAK84577.1| predicted protein [Ustilago maydis 521]
Length = 183
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 78 VHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKV 137
S G+ S + + + V + W+ GH G NE+
Sbjct: 27 PCATKSSQPFSRLYRGYCISIGTRPSSDPDISTVQQFAVAKHVAVVWVTGHCGILGNERA 86
Query: 138 DRIARNAAVSFKNK 151
D +A+NAA +
Sbjct: 87 DSLAQNAADDVIRE 100
>gi|255984954|gb|ACU46549.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTNKGRQKVVXLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984808|gb|ACU46476.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984592|gb|ACU46368.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255983946|gb|ACU46045.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKDKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|224986423|gb|ACN74977.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|224986113|gb|ACN74698.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|93210903|gb|ABF00857.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+++I+S E T N+ + AI+ +V
Sbjct: 592 YVDGAANRETKLGKAGY---ITDKGRQRIVSLTE---TTNQKAELQAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + + + +V L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDKSESELVD-------------QIIEQLIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSRGIRK 709
>gi|51599131|gb|AAU08216.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y +GA + N G G + ++ I M ++ A++ V +
Sbjct: 590 YVNGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQKAELMAILLALQ-----DSKKTVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 645 VTDSQYALGIISSQPTQSE-------------SPIVQQIIEELTKKDQVYLAWVPAHKGI 691
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 692 GGNEKIDKL 700
>gi|38491781|gb|AAR22160.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I L A++ +V +
Sbjct: 602 YVDGAANRETKIGKAGYVTDRGKQKIITLTETTNQKTELQALQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIRK 719
>gi|77416893|sp|P12499|POL_HV1Z2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1029 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGLEVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1084 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1131 GGNEQVDKLVSQGIRK 1146
>gi|13569279|gb|AAK31018.1|AF286230_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELHAICIALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|86753463|gb|ABD14900.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYITDRGRQKIVSLTETTNQKTELQAIQI----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKEIRK 709
>gi|86753583|gb|ABD15008.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.8 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|307091483|gb|ADN28075.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|306416446|gb|ADM87070.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416372|gb|ADM87033.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSDSDVVNQIIEELIKKDRVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289187131|gb|ADC92145.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288558521|dbj|BAI68318.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|288188536|gb|ADC42741.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKKKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256010849|gb|ACU55281.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGASNRETKEGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGVEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKERVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|255984304|gb|ACU46224.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 41 YVDGAANRESKLGKAGYVTNXGRQRXVXLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|159031769|dbj|BAF91856.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|159031761|dbj|BAF91852.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|159031759|dbj|BAF91851.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|119507959|dbj|BAF42362.1| Pol [Human immunodeficiency virus 1]
gi|119507969|dbj|BAF42371.1| Pol [Human immunodeficiency virus 1]
Length = 1017
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 610 YVDGAANRETKKGKAGYVTDRGRQKVISLTDTTNQKTELQAINLALQ-----DSGPEVNV 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 665 VTDSQYA-------------LGIIQAQPDTSESEVVNQIIEQLIKKEKVYLSWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 712 GGNEQVDKLVSNGIRK 727
>gi|37935851|gb|AAO47103.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ KV +
Sbjct: 594 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 649 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 695
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 696 GGNEKIDKL 704
>gi|32261475|gb|AAP76538.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1429
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1022 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1076
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1077 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 1123
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1124 GGNEQVDKLVSSGIRK 1139
>gi|82571261|gb|ABB84033.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRETKIGKAGYVTDKGRQKIVSLTETTNQKAGLQAIQLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKGESELVNQIIEQLINKERIYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 692 GGNEQVDKLVSRGIR 706
>gi|325638806|gb|ADZ36160.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|319429324|gb|ADV56938.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E ++ + +
Sbjct: 540 YVDGAASRETKLGKAGY---VTDRGRQKIVSLXETTNQKAELQAICL----ALQDSGSEX 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + + + + + +V L W+ H
Sbjct: 593 NIVTDSQYALGIIQXQPDKSE-------------SELVNQIIEQLIXKERVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSXGIRK 657
>gi|315927616|gb|EFV06947.1| Ribonuclease H [Campylobacter jejuni subsp. jejuni DFVF1099]
Length = 43
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
HK+ +W+K H G+ ENE+ D +AR AA+ +
Sbjct: 5 HKIKAFWVKAHNGHLENERCDTLAREAALKIARE 38
>gi|306416316|gb|ADM87005.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288187634|gb|ADC42309.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKSGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQSQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255983944|gb|ACU46044.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + Z + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEZLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSXGIRK 657
>gi|170581800|ref|XP_001895843.1| RNase H family protein [Brugia malayi]
gi|158597074|gb|EDP35304.1| RNase H family protein [Brugia malayi]
Length = 255
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALKYPC 67
Y DG+ GG G+ + +G + ++ ++
Sbjct: 75 VYCDGSFDWTLRKGGIGIFWSPNDERNAHLSLTGSKLTNIRAEIQAVSLAALQACSLNFD 134
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
++++ TDS +V K + W+ +W+ N WK +D K ++N+D K + K+ + G
Sbjct: 135 RIIIKTDSQFVVKVINSWLSRWRSNEWKKADGKQIENMDDIQKLSRYTEMIKMRVEHTYG 194
Query: 128 HA--------------------GNQENEKVDRIARNAAVS 147
H N DR++R A
Sbjct: 195 HQKYDERKELEESWDAMSCDERDRCGNFHSDRLSRLAVDQ 234
>gi|156254423|gb|ABU62701.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAASRETKSGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSGL-EV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|67553042|gb|AAY68634.1| pol protein [Human immunodeficiency virus 1]
gi|212383216|gb|ACJ25899.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682978|gb|AAQ98540.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37677855|gb|AAQ97525.1| Pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|37677865|gb|AAQ97534.1| Pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|14091496|gb|AAK53767.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G+ K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRRKVVSLTE---TTNQKTELHAIHLALQDSG-TEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14091526|gb|AAK53782.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHR 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|885617|gb|AAC55688.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|325635064|gb|ADZ32984.1| pol protein [Human immunodeficiency virus 1]
gi|325635074|gb|ADZ32992.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288558577|dbj|BAI68345.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 191 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 243
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + + + E + KV L W+ H
Sbjct: 244 NIVTDSQYV-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 290
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 291 GIGGNEQVDKLVSSGIRK 308
>gi|88809994|gb|ABD52331.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 559
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 440 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTDTTNQKTELQAIQL----ALQDSGSEV 492
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G S ++ + + + K+ L W+ H
Sbjct: 493 NIVTDSQYA-------------LGIIQSKPDKSESELVNQIIEQLINKEKIYLAWVPAHK 539
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 540 GIGGNEQVDKLVSAGIRK 557
>gi|86560255|gb|ABD04308.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAICL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|119507351|dbj|BAF42571.1| Pol [Human immunodeficiency virus 1]
gi|119507361|dbj|BAF42580.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGKQKVVSLTD---TTNQKAELEAIHLALQDSGL-QV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + K+ L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|86371858|gb|ABC94972.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 601 YVDGAASRETKLGKAGY--------------------VTNRGGQKVVSLTETTNQKTELH 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 641 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKDKVYLSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|114431126|dbj|BAF31379.1| Pol [Human immunodeficiency virus 1]
gi|114431136|dbj|BAF31388.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|108860349|dbj|BAE95876.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37682879|gb|AAQ98452.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|37682731|gb|AAQ98321.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|4324766|gb|AAD17030.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A L +V +
Sbjct: 1020 YVDGAANRETKLGKAGYVTDKGRQKIVP---LTETTNQRAELQAI--QLALQDSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKERVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|14091494|gb|AAK53766.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGA-CSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRENKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSR-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14091518|gb|AAK53778.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|67524677|ref|XP_660400.1| hypothetical protein AN2796.2 [Aspergillus nidulans FGSC A4]
gi|40744048|gb|EAA63230.1| hypothetical protein AN2796.2 [Aspergillus nidulans FGSC A4]
gi|259486281|tpe|CBF83995.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 686
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ + + + WI GH+G NE D++A+ + + I
Sbjct: 492 QPCHRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPNI 531
>gi|255984724|gb|ACU46434.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGKQKVVSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|212383328|gb|ACJ25944.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI++ E TTN + EL A L +V +
Sbjct: 592 YVDGAASRET-KMGKAGYVTDRGRQKIVTLNE--TTNQKAELQAV--QLALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682889|gb|AAQ98461.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIQKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|14091544|gb|AAK53791.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|327458359|gb|AEA76619.1| pol protein [Human immunodeficiency virus 1]
Length = 544
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 425 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 477
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 478 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 524
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 525 GIGGNEQVDKLVSSGIRK 542
>gi|327458305|gb|AEA76592.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + G++KIIS + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDXGRQKIISITDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|292658942|gb|ADE34335.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|256010747|gb|ACU55230.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRVGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYT-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984292|gb|ACU46218.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|238733889|gb|ACR55158.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGASNRETKTGKAGYVTDRGRQKVVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|212383308|gb|ACJ25938.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKVGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|117643962|gb|ABK51654.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E ++ + +V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGTEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKDKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|45361135|gb|AAS59350.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 590 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 643 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKKKVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|37682821|gb|AAQ98402.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37682801|gb|AAQ98384.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|15281421|gb|AAK94211.1|AF361871_2 pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|55735968|gb|AAV59699.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQK---AVPLTETTNQKAELHAI--QLALQDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEHLIKKTKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRKI 714
>gi|325634950|gb|ADZ32885.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|325634926|gb|ADZ32864.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|325634894|gb|ADZ32836.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|325634878|gb|ADZ32822.1| pol protein [Human immunodeficiency virus 1]
gi|325634910|gb|ADZ32850.1| pol protein [Human immunodeficiency virus 1]
gi|325634966|gb|ADZ32899.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|312602006|gb|ADQ92558.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEEMIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|306416400|gb|ADM87047.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416256|gb|ADM86975.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|284192169|gb|ADB82804.1| pol protein [Simian immunodeficiency virus]
Length = 749
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + I + A+K KV +
Sbjct: 450 YVDGAANRNSKEGKAGYITARGKSKVIPLENTTNQKAELEAIKIALKDAGP-----KVNI 504
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK-VDLYWIKGHAG 130
TDS Y S + + + +E Q + V L W+ H G
Sbjct: 505 VTDSQYALGIL--------------SACPDQSDNPIVREIIELMIQKEGVYLAWVPAHKG 550
Query: 131 NQENEKVDRIARNAAVS 147
NE +D++
Sbjct: 551 IGGNEHIDKLVSKGIRQ 567
>gi|256011178|gb|ACU55445.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRDTKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|238635660|gb|ACR52880.1| pol protein [Human immunodeficiency virus 1]
gi|238635698|gb|ACR52913.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKAVHLTDTTNQKTELQAIHLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|228476064|ref|ZP_04060772.1| cell wall enzyme EbsB [Staphylococcus hominis SK119]
gi|314936424|ref|ZP_07843771.1| EbsB protein [Staphylococcus hominis subsp. hominis C80]
gi|228269887|gb|EEK11367.1| cell wall enzyme EbsB [Staphylococcus hominis SK119]
gi|313655043|gb|EFS18788.1| EbsB protein [Staphylococcus hominis subsp. hominis C80]
Length = 133
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
+ D A SGNPG G++++ + + E N+ E A I AL +
Sbjct: 3 KIFFDAATSGNPGRSTCGIVIKENDIKYTYTHDLGELDNHSAEWSAFIHALEHARELNVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LL+TDS + +Q K + K + ++ + + W+
Sbjct: 63 NALLHTDSKLIEDSVNQG-------YVKNARFKPFFE----NMEILEASFDLLFVKWVP- 110
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
+N++ +++A+ A
Sbjct: 111 ---RDKNKEANQLAQQALYKLIK 130
>gi|242811493|ref|XP_002485760.1| hypothetical protein TSTA_097780 [Talaromyces stipitatus ATCC
10500]
gi|218714099|gb|EED13522.1| hypothetical protein TSTA_097780 [Talaromyces stipitatus ATCC
10500]
Length = 174
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 25/140 (17%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ G G AAI TA
Sbjct: 23 DIVIFSDGS-RLIDGRAG---------------------EATLAGAQAAITYPTAQFATN 60
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + V + S I Q+ +T+ + + + + + W+ G
Sbjct: 61 LWICLDNLEVVTRLLSPSIGSSQEVFE---SFRTLTATWPLRERLPHTKSGSIQIRWVPG 117
Query: 128 HAGNQENEKVDRIARNAAVS 147
HA ENE D A+ A S
Sbjct: 118 HAKIPENEAADLAAKEGAAS 137
>gi|86560195|gb|ABD04254.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|55740227|gb|AAV63801.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVPLTDTTNQKTELQAVNLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYV-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSQGIRK 713
>gi|37682968|gb|AAQ98531.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37682599|gb|AAQ98279.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIR 714
>gi|32399658|emb|CAD59561.1| gag-pol fusion protein [Human immunodeficiency virus 1]
Length = 1437
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1030 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGSEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1132 GGNEQVDKLVSSGIRK 1147
>gi|22596253|gb|AAN03043.1|AF457054_2 pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKVGKAGYVTDRGRQKVVSISETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|17864052|gb|AAL47045.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|15788248|gb|AAL07700.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S E T N+ + AI+ +V
Sbjct: 596 YVDGAANRETKQGKAGY---VTDKGRQKAVSLTE---TTNQKTELHAIQLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIKKI 714
>gi|25166801|gb|AAN73592.1|AF484495_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAASRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGSEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESGLVSQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRK 1143
>gi|325634566|gb|ADZ32550.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + ++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLVLQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288188503|gb|ADC42725.1| pol protein [Human immunodeficiency virus 1]
gi|288188511|gb|ADC42729.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256010787|gb|ACU55250.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSLAETTNQKTELYAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAHPDQSEAETVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|238635681|gb|ACR52898.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKAVHLTDTTNQKTELQAIHLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212383195|gb|ACJ25890.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 579 LEKEPMAGVETFYVDGAANRETKLGRAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ- 637
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 638 ----DSGPEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 680
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++
Sbjct: 681 IYLSWVPAHKGIGGNEQVDKLVSTGIRK 708
>gi|212382982|gb|ACJ25790.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIQKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|157885647|gb|ABV91569.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114431106|dbj|BAF31361.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491519|gb|AAR21927.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSKGIRRI 714
>gi|17902116|gb|AAL47785.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|587131|emb|CAA85506.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 573
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|326416822|gb|ADZ73264.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|256011412|gb|ACU55562.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKDKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984948|gb|ACU46546.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|156254375|gb|ABU62677.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKIGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|119507341|dbj|BAF42562.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVHLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|14091504|gb|AAK53771.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|328833994|gb|AEB52453.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKSGKAGY---ITDRGRQKVVS--LTDTTNQRTELQAIYLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|306416414|gb|ADM87054.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416346|gb|ADM87020.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416196|gb|ADM86945.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416262|gb|ADM86978.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIR 557
>gi|255984098|gb|ACU46121.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQRVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|148745861|emb|CAK49319.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS E T N+ + AI P +V
Sbjct: 597 YVDGAANRETKLGKAGY---ITDKGRQKVISLTE---TTNQKTELHAIHLALQDSGP-EV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSEAELVNQIIEKLIEKE-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|145611632|ref|XP_369008.2| hypothetical protein MGG_00238 [Magnaporthe oryzae 70-15]
gi|145018896|gb|EDK03175.1| hypothetical protein MGG_00238 [Magnaporthe oryzae 70-15]
Length = 1175
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 953 EVRVRWCPGHQGIPGNDRADELAKAG 978
>gi|63014468|gb|AAY25640.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|57869712|gb|AAW57747.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|22596575|gb|AAN03329.1|AF457090_2 pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGASNRETKLGKAGYVTDRGRQKVVTITDTTNQKTELQAINLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLITKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|13095189|gb|AAK12173.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNERVDKLVSAGIRK 560
>gi|79330550|ref|NP_001032054.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|222424272|dbj|BAH20093.1| AT5G51080 [Arabidopsis thaliana]
gi|332008649|gb|AED96032.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 259
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
DGA GNPG G +L + G TNN E I L K
Sbjct: 124 IIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKG 183
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
K+ + TDS V K + K + + +
Sbjct: 184 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEI------------- 230
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
H N D A AA + ++
Sbjct: 231 -SHVLRSLNSDADEQANMAARLSEGEV 256
>gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana]
gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana]
gi|332008647|gb|AED96030.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332008648|gb|AED96031.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 322
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
DGA GNPG G +L + G TNN E I L K
Sbjct: 187 IIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKG 246
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
K+ + TDS V K + K + + +
Sbjct: 247 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEI------------- 293
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNKI 152
H N D A AA + ++
Sbjct: 294 -SHVLRSLNSDADEQANMAARLSEGEV 319
>gi|326416904|gb|ADZ73305.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K+IS +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVIS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|325636738|gb|ADZ34409.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306416382|gb|ADM87038.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011696|gb|ACU55704.1| pol protein [Human immunodeficiency virus 1]
Length = 865
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVPLKDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010725|gb|ACU55219.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K+IS + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGKQKVISITDTTNQKTELQAIYL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|255984928|gb|ACU46536.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984572|gb|ACU46358.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|238733991|gb|ACR55248.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVICLTETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|222428484|gb|ACM50117.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|112361445|gb|ABI15756.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VADRGRKKVVSPTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|67553052|gb|AAY68643.1| pol protein [Human immunodeficiency virus 1]
gi|212383236|gb|ACJ25908.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKKGRAGYVTDRGRQKVITLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|59003668|gb|AAW83663.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 579 LEKEPMAGVETFYVDGAANRETKLGRAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ- 637
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + E + +
Sbjct: 638 ----DSGPEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKER 680
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++
Sbjct: 681 IYLSWVPAHKGIGGNEQVDKLVSTGIRK 708
>gi|45361089|gb|AAS59314.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 592 YVDGAANRETKQGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|38892717|gb|AAR27714.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELHAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|37221222|gb|AAQ89742.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|3002860|gb|AAD03217.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ ++ + A++ +V +
Sbjct: 1028 YVDGAANRETKIGKAGYVTNKGRQKVVLLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIHAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRK 1145
>gi|63097375|gb|AAY32087.1| protease [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGN--PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E ++ + +V
Sbjct: 441 YVDGASNRETRQGKAGY---VTDRGRQKAVSLTETTNQKAELQAIXL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VDR+
Sbjct: 541 GIGGNEQVDRLVSTGIRKI 559
>gi|306416462|gb|ADM87078.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRKKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416274|gb|ADM86984.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRKKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011140|gb|ACU55426.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTSRGRQKVVSIPDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984840|gb|ACU46492.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255519513|dbj|BAH90733.1| pol protein [Human immunodeficiency virus 1]
gi|255519523|dbj|BAH90742.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGASNRETKIGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 646 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 693 GGNEQVDKLVSAGIRK 708
>gi|294880808|ref|XP_002769157.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239872317|gb|EER01875.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 713
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ KV +W+ GH+G N++ D +A A
Sbjct: 526 DPEIPDKVTFHWVPGHSGMFANDRADELAAKGASMM 561
>gi|313116846|ref|YP_004037970.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
gi|312294798|gb|ADQ68834.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
Length = 240
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGK 35
Y DG+ GNPGP G G ++ +
Sbjct: 79 NSFILYVDGSSRGNPGPAGAGAVIMDATE 107
>gi|212674720|gb|ACJ37135.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRXTKIGKAGYVTDRGRQKIVTLNETTNQKTELQAIHLALQ-----DSGHEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|159031773|dbj|BAF91858.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|86560225|gb|ABD04281.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|37909403|gb|AAO65564.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDKGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|37682988|gb|AAQ98549.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|13095061|gb|AAK12123.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T NR + AI +V
Sbjct: 441 YVDGAANRETRLGKAGY---VTDKGRQKVVSITD---TTNRKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQVIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|85700654|gb|ABC74757.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E +E + +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVISITETTNQKTELEAINL----ALQDSGAEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|71725993|gb|AAZ39126.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K +S E ++ + +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDRGKQKAVSLTETTNQKAELQAIQL----ALQDSGSEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRKI 718
>gi|325637104|gb|ADZ34716.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIRLALQ-----DSGSEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288558555|dbj|BAI68334.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELXAIXL----ALQDSGSEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|256010697|gb|ACU55205.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDITNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984056|gb|ACU46100.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGXAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 1139
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 11/144 (7%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIKALTALK 64
Y+D + G+ G + + ++ + S G + + + EL+ A++
Sbjct: 814 VVYSDAS--GHDSHLGAAAVALDRHQKVVASRTTTIGPMAQWSIHTAELIGIFYAISLAF 871
Query: 65 YPCKVLLYTDS----SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + V + S +
Sbjct: 872 RLSHQNKQPSRPGTGEMITILSDSKSALQAIRNPSNKSGQRVIQAINQSAYELDSRGISL 931
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
L WI GH + N+ D +A+ A
Sbjct: 932 RLQWIPGHCDDPGNDAADHLAKTA 955
>gi|213495571|gb|ACJ49040.1| pol protein [Human immunodeficiency virus 1]
Length = 993
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPIADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|110809916|gb|ABG91347.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELYAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIRKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRK 713
>gi|67553082|gb|AAY68670.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI++ E TTN + EL A L +V +
Sbjct: 592 YVDGAASRET-KMGKAGYVTDRGRQKIVTLNE--TTNQKAELQAV--QLALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|59003609|gb|AAW83610.1| pol protein [Human immunodeficiency virus 1]
gi|212383188|gb|ACJ25887.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KII+ E ++ + +V +
Sbjct: 597 YVDGAANRET-KMGKAGYVTDKGRQKIITLSETTNQKTELQAIQL----ALQDSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|37682741|gb|AAQ98330.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|17902127|gb|AAL47794.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|6093148|emb|CAB58981.1| POL protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAHPDKSESEIVNQIIEQLIQKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|334661|gb|AAB59906.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1056
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G+ + +GK+K+ ++TTN + EL A + ALT +
Sbjct: 644 YTDGSCNKQSKEGKAGY---ITDRGKDKV--KVLEQTTNQQAELEAFLMALTDSGPKTNI 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS YV + + + + + E + ++ + W+ H
Sbjct: 699 IV--DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHK 743
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 744 GIGGNQEIDHLVSQGIRQ 761
>gi|1332360|gb|AAB00755.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 961
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + ++TTN + EL A ALT +++
Sbjct: 549 YTDGSCNRQSKEGKAGYITDRGRDRV---KVLEQTTNQQAELEAFAMALTDSGPKANIIV 605
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 606 --DSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAIYVAWVPAHKGI 650
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 651 GGNQEVDHLVSQGIRQ 666
>gi|87116042|gb|ABD19580.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KIIS E ++ + +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDKGRQKIISLTETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|325636103|gb|ADZ33872.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636080|gb|ADZ33852.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|302594698|gb|ADL59537.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E ++ + +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTETTNQKTELQAIYL----ALQDSGSEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIQKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|255984456|gb|ACU46300.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGXAGYVTBXGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|238635652|gb|ACR52873.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKAVHLTDTTNQKTELQAIHLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|242826269|ref|XP_002488606.1| endonuclease/reverse transcriptase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712424|gb|EED11850.1| endonuclease/reverse transcriptase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 780
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ K + + + + W+ GHA ENE D A+ A S
Sbjct: 619 WPFRKRLPHTKSGSIQIRWVPGHAKIPENEAADLAAKEGAASI 661
>gi|194399939|gb|ACF60910.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAASRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLINKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|86277568|gb|ABC88292.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSGTEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|57869721|gb|AAW57755.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|53829051|gb|AAU94530.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|53829001|gb|AAU94485.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|28190654|gb|AAO33139.1|AF479638_3 pol polyprotein [Ovine lentivirus]
Length = 976
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G G + K + G + R A + + +
Sbjct: 448 YTDGGKKN--GIGSLGYIASTGEKYRKREQGTNQQLELRAIEEACKQGPKVMN------V 499
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ ++W+ GH G
Sbjct: 500 VTDSRYAFEFMLRDGDEEVIKNPIQARIMKLIHNKD-----------KIGIHWVPGHKGI 548
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +A+
Sbjct: 549 PQNEEIDKYISEIFLAKEG 567
>gi|13095058|gb|AAK12122.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNERVDKLVSAGIRK 558
>gi|1398966|dbj|BAA12997.1| Pol [Human immunodeficiency virus 1]
Length = 1015
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 608 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 663 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|324121190|gb|ADY18660.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K+I+ E T N+ + AI +V +
Sbjct: 594 YVDGAANRETKIGKAG-YITDKGRQKVITLTE---TTNQKTELEAIHLALQDSGL-EVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKDKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|319429321|gb|ADV56936.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + NR T + +
Sbjct: 540 YVDGAANRETKIGKAGYV------------------TNRGRQKIVSLTETTNQKTELHAI 581
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
Y + G + ++ + + + +V L W+ H G
Sbjct: 582 YLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306416292|gb|ADM86993.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|306416190|gb|ADM86942.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289186952|gb|ADC92056.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGITK 657
>gi|288558533|dbj|BAI68323.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELYAVHLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 247 VTDSQYA-------------LGIIQAQPDRSDSELVNQIIEELIKKDKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIRK 309
>gi|38892755|gb|AAR27748.1| pol protein [Human immunodeficiency virus 1]
gi|212382582|gb|ACJ25611.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANKETKIGKAGYVTDKGRQKVVTLNETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|17046533|gb|AAL34572.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 22/140 (15%)
Query: 10 HAYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
Y DGA + G G+ + KG++K++S E T N+ + AI+
Sbjct: 590 TLYVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIQLALQDSG-S 642
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V + TDS Y G + ++ + + + +V L W+
Sbjct: 643 EVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPA 689
Query: 128 HAGNQENEKVDRIARNAAVS 147
H G NE+VD++ +
Sbjct: 690 HKGIGGNEQVDKLVSSGIRK 709
>gi|49574351|gb|AAT66845.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|885625|gb|AAC55692.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|326370832|gb|ADZ56589.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQSQPDKSESEIVNQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|325637698|gb|ADZ35219.1| pol protein [Human immunodeficiency virus 1]
gi|325637723|gb|ADZ35240.1| pol protein [Human immunodeficiency virus 1]
gi|325637735|gb|ADZ35250.1| pol protein [Human immunodeficiency virus 1]
gi|325637750|gb|ADZ35263.1| pol protein [Human immunodeficiency virus 1]
gi|325637755|gb|ADZ35267.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|325636088|gb|ADZ33859.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325634558|gb|ADZ32543.1| pol protein [Human immunodeficiency virus 1]
gi|325634574|gb|ADZ32557.1| pol protein [Human immunodeficiency virus 1]
gi|325636025|gb|ADZ33804.1| pol protein [Human immunodeficiency virus 1]
gi|325636064|gb|ADZ33838.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416324|gb|ADM87009.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416390|gb|ADM87042.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIR 557
>gi|306416258|gb|ADM86976.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRESKLGKAGY---VTDRGKQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIVQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|304323012|gb|ADM23857.1| pol polyprotein [Small ruminant lentivirus]
Length = 1102
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G EK E TN ++EL A +AL +
Sbjct: 575 YTDGGKKNKTGNLG----FIASTGEKFRRHEEG--TNQQLELRAIEEALKQGPQRMNI-- 626
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + + ++W+ GH G
Sbjct: 627 VTDSRYAFEFMLRNWDEEVIKNPIQARIMEIAHKKDM-----------IGVHWVPGHKGI 675
Query: 132 QENEKVDR------IARNA 144
+NE+VD+ +A+
Sbjct: 676 PQNEEVDQYISEIFLAKEG 694
>gi|212382563|gb|ACJ25603.1| pol protein [Human immunodeficiency virus 1]
Length = 994
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 587 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELHAIQLALQ-----DSGSEVNI 641
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 642 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 688
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 689 GGNEQVDKLVSSGIRK 704
>gi|187371907|gb|ACD02806.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + ETTN + EL A L +V +
Sbjct: 601 YVDGASNRETKEGKAGYV---TDKGRQKAVSLTETTNQKAELHAI--QLALQDSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 656 VTDSQYV-------------LGIIQAQPDKSESGLVNQIIEQLINKERVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|184155642|ref|YP_001843982.1| hypothetical protein LAF_1166 [Lactobacillus fermentum IFO 3956]
gi|227514874|ref|ZP_03944923.1| possible ribonuclease H [Lactobacillus fermentum ATCC 14931]
gi|260663038|ref|ZP_05863931.1| ribonuclease HI [Lactobacillus fermentum 28-3-CHN]
gi|183226986|dbj|BAG27502.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227086721|gb|EEI22033.1| possible ribonuclease H [Lactobacillus fermentum ATCC 14931]
gi|260552659|gb|EEX25659.1| ribonuclease HI [Lactobacillus fermentum 28-3-CHN]
Length = 133
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 21/140 (15%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAIKALTALK 64
+ Y+D A GNPGP G G L+ GK++ S + A L
Sbjct: 2 IKLYSDAATKGNPGPTGLGWLIVAGGKQRQQSATLNRADNHHGEFAAATAAFDDLLANYG 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ V+ YTDS + + +L A V W
Sbjct: 62 HDQVVMFYTDSRLLADAIGKGYA-------------KHYQPELDQLLERIDALPTVVTQW 108
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ +N +A A
Sbjct: 109 V----SESQNHGAHSLANQA 124
>gi|17902094|gb|AAL47767.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|49574288|gb|AAT66815.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLMKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574286|gb|AAT66814.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLMKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|326416874|gb|ADZ73290.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416858|gb|ADZ73282.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416828|gb|ADZ73267.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416820|gb|ADZ73263.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416788|gb|ADZ73247.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|306416210|gb|ADM86952.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRKKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288188505|gb|ADC42726.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|283444864|gb|ADB20334.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGASNRETKMGKAGYVTDRGRQKVVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|256010765|gb|ACU55239.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984146|gb|ACU46145.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVITLTDTTNQQTELQAIXIALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQY-------------XLGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|224986303|gb|ACN74869.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E ++ + +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKERVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|170778895|gb|ACB36847.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKAGKAGYVTNRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEXVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|156541498|ref|XP_001601228.1| PREDICTED: similar to pol-like protein [Nasonia vitripennis]
Length = 751
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
++ + + + + Q+++ YWI H G + NE+ D +A+ A
Sbjct: 542 KNNILDIYTDGSKIPGNKNNPQNELYFYWIPAHVGIEGNERADTVAKRATEK 593
>gi|110815941|sp|Q75002|POL_HV1ET RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1439
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1032 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1086
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ +V L W+ H G
Sbjct: 1087 VTDSQYA-------------LGIILAQPDKSESEIVNQIIEQLISKERVYLSWVPAHKGI 1133
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1134 GGNEQVDKLVSSGIRK 1149
>gi|46486647|gb|AAS98752.1| pol protein [Human immunodeficiency virus 1]
gi|212382560|gb|ACJ25602.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + KG++KI++ E T N+ + AI+ +V +
Sbjct: 592 YVDGAASRET-KMGKAGYVTDKGRQKIVTLSE---TTNQKAELQAIQLALQDSGL-EVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|11385953|gb|AAG35040.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L KV +
Sbjct: 540 YVDGASNRETKIGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--QLALQDSGSKVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKENVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRKI 658
>gi|11385959|gb|AAG35043.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K +S E T N+ + AI+ P +V
Sbjct: 395 YVDGASNRDTKLGKAGY---VTDRGRQKAVSLTE---TTNQKAELHAIQLALQDSGP-EV 447
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 448 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 494
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 495 GIGGNEQVDKLVSAGIRKI 513
>gi|327458291|gb|AEA76585.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGXQKVVSXTDTTNQKTELQAIXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRKI 559
>gi|288187751|gb|ADC42366.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|224986203|gb|ACN74779.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|224155416|ref|XP_002200197.1| PREDICTED: similar to pol-like protein ENS-3 [Taeniopygia guttata]
Length = 776
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 11 AYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETTNN-RMELMAAIKALTALKYPCK 68
+TDG+C W + + GE ++ ++ + + + K
Sbjct: 375 LFTDGSCRIVGMNRKWKAAVWSPTRWVAEATEGEGGSSQFAELKAIQLALDIAEREKWPK 434
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ LYTDS V W+++W++ W+ K + + W + V + + H
Sbjct: 435 LYLYTDSWMVANALWGWLERWKKANWQRR-GKPIWAAEEWKDIATRVEKLPVKVRHVDAH 493
Query: 129 AGN-------QENEKVDRIARNAAVSF 148
Q N++VD+ A
Sbjct: 494 VPRSRANEEQQNNQQVDQAANIGVSKI 520
>gi|159031757|dbj|BAF91850.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 410 YVDGAANRETXLGKAGY---VTDKGRQKVVSMTDTTNQKTELQAINL----ALQDSGSEV 462
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 463 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 509
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 510 GIGGNEQVDKLVSNGIRK 527
>gi|37682998|gb|AAQ98558.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|263958|gb|AAB25033.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 441 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 496 IVDSQYVMGIVASQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 543 GGNQEVDHLVSQGIRQ 558
>gi|60652104|gb|AAX33171.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|60544788|gb|AAX22733.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|325637913|gb|ADZ35402.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVSITNTTNQKTELQAIYLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSKGIRK 719
>gi|325635940|gb|ADZ33730.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416404|gb|ADM87049.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRKKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288188554|gb|ADC42750.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011598|gb|ACU55655.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010723|gb|ACU55218.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984086|gb|ACU46115.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|212383268|gb|ACJ25922.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---ITDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|113201808|gb|ABI33125.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN R EL A L +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGKQKVIT---LTETTNQRTELQAI--QLALQDSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 658 VTDSQYALGIIQAQPDRSE-------------SDLVNQIIEQLIKKEKVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 705 GGNEQVDKLVSKGIRK 720
>gi|108860358|dbj|BAE95884.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|57869730|gb|AAW57763.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|57869675|gb|AAW57714.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|17046783|gb|AAL34797.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|29119267|gb|AAO63188.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|49574353|gb|AAT66846.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|85700684|gb|ABC74784.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E T N+ + AIK P +V +
Sbjct: 595 YVDGAANRET-KMGKAGYVTDRGRQKIISLSE---TTNQKTELHAIKLALQDSGP-EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|296273633|ref|YP_003656264.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
gi|296097807|gb|ADG93757.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
Length = 154
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 6 LREVHAYTDGACSGNPG-PGGWGVLLRYKGK---EKIISGGEKETTNNRMELMAAIKALT 61
+ + + DG+ NP G+G Y + I + T++ ++EL + AL
Sbjct: 1 MSSLKLFCDGS--VNPQSKIGFGAYFIYDENLSTQNIRLKKFENTSSTKLELEVFLWALE 58
Query: 62 ALKYPCK-VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
K +++YTD + + +K + N +K+S K +KN +L+ KF E +
Sbjct: 59 DEKTISNDIIVYTDCQNILGLEN-RREKLEGNFYKSSTGKEIKNKELYKKFFEICDKTHC 117
Query: 121 DLYWIKGHAGNQENEKVDRI 140
+KGH + + + +DR+
Sbjct: 118 KFVKVKGHKSSSQKDNIDRL 137
>gi|256011446|gb|ACU55579.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGASNRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|224986173|gb|ACN74752.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|212382978|gb|ACJ25788.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKMGKAGYVTDRGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|85035360|gb|ABC68945.1| pol protein [Human immunodeficiency virus 1]
Length = 992
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 585 YVDGAANRETKIGKAGYVTDRGRKKVVSLTETTNQKTELQAICIALQ-----DSGSEVNI 639
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 640 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 686
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 687 GGNEQVDKLVSNGIR 701
>gi|63014599|gb|AAY25756.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKQGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|33328199|gb|AAQ09547.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 601 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDXSESEVVNQIIEELIKKEKVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|24753973|gb|AAN64096.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 601 YVDGAAKRETRLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|88174678|gb|ABD39420.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|325637693|gb|ADZ35215.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|288188550|gb|ADC42748.1| pol protein [Human immunodeficiency virus 1]
gi|288188552|gb|ADC42749.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188532|gb|ADC42739.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188521|gb|ADC42734.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187753|gb|ADC42367.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|224986323|gb|ACN74887.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|239631452|ref|ZP_04674483.1| ribonuclease HI [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525917|gb|EEQ64918.1| ribonuclease HI [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 132
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 21/148 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALK 64
+ YTDGA GNPGP G+L+ + +N+ E AAI A
Sbjct: 2 LKLYTDGATKGNPGPAALGILVSGLPHQIQKHAALPAMSNHEAEFAAAIAGFELLIQAGL 61
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V Y+DS V + + + L + V W
Sbjct: 62 NTTPVAFYSDSKLVIQAIEKQY----------AKHYPDLAGRLLTLIGQFPL---VLPNW 108
Query: 125 IKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ ++ N +A+ + KI
Sbjct: 109 LP----DRANRGAHMLAQQGLRQSETKI 132
>gi|115334453|dbj|BAF33189.1| Pol [Human immunodeficiency virus 1]
gi|115334463|dbj|BAF33198.1| Pol [Human immunodeficiency virus 1]
gi|115334473|dbj|BAF33207.1| Pol [Human immunodeficiency virus 1]
gi|115334483|dbj|BAF33216.1| Pol [Human immunodeficiency virus 1]
gi|115334493|dbj|BAF33225.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|63014557|gb|AAY25719.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKIYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|63081178|gb|AAY30340.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E T N+ + AI +V +
Sbjct: 505 YVDGAANRET-KMGKAGYVTDRGRQKVISLXE---TTNQKTELRAIHLALQDSG-SEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 607 GGNEQVDKLVSNGIRK 622
>gi|56417606|gb|AAV90744.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSFNDTTNQKTELQAIHLALQ-----DSGVEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|17981620|gb|AAL51090.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I ETTN + EL A AL +
Sbjct: 595 YVDGAASRETKKGKAGYVTDQGRQKTIS---LTETTNQKAELQALYLALQDSGLEANI-- 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDSSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|18643011|gb|AAL74046.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 904
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KIIS E T N+ + AI+ P +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKIISLTE---TTNQKSELQAIQLALQDSGP-EV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|17864032|gb|AAL47027.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|11761567|gb|AAG38899.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|130597|sp|P16088|POL_FIVPE RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
Length = 1124
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G GK +++ + E +N + E+ A + AL A ++
Sbjct: 599 YIDGG--RKLGKAAKAAYWTDTGKWRVM---DLEGSNQKAEIQALLLALKAGSEEMNII- 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV Q + E + + + W+ GH G
Sbjct: 653 -TDSQYVINIILQQ--------------PDMMEGIWQEVLEELEKKTAIFIDWVPGHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 PGNEEVDKL 706
>gi|148544155|ref|YP_001271525.1| RNase HI [Lactobacillus reuteri DSM 20016]
gi|184153528|ref|YP_001841869.1| putative ribonuclease HI [Lactobacillus reuteri JCM 1112]
gi|227364584|ref|ZP_03848645.1| ribonuclease H [Lactobacillus reuteri MM2-3]
gi|325682301|ref|ZP_08161818.1| ribonuclease HI/cell wall enzyme EBSB [Lactobacillus reuteri
MM4-1A]
gi|148531189|gb|ABQ83188.1| RNase HI [Lactobacillus reuteri DSM 20016]
gi|183224872|dbj|BAG25389.1| putative ribonuclease HI [Lactobacillus reuteri JCM 1112]
gi|227070421|gb|EEI08783.1| ribonuclease H [Lactobacillus reuteri MM2-3]
gi|324978140|gb|EGC15090.1| ribonuclease HI/cell wall enzyme EBSB [Lactobacillus reuteri
MM4-1A]
Length = 131
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 23/142 (16%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI------ISGGEKETTNNRMELMAAIKALTA 62
+ +TD A GN GP G G+++ K+ + +
Sbjct: 2 IKIFTDAATKGNLGPTGLGIIIIANHKQIQLAIPVDKEKMDNHHGEFAAAHFGFKYLIDH 61
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+L YTDS + + + + + + V
Sbjct: 62 FSNNETILFYTDSRILSDAIGKNYT--KHYQKELAALNPLLQ-----------HFPTVVT 108
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
WI +N +A A
Sbjct: 109 QWIP----ESQNRGAHNLANQA 126
>gi|327458265|gb|AEA76572.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQXTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325637768|gb|ADZ35278.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|325634683|gb|ADZ32652.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 612 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 667 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 713
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 714 GGNEQVDKLVSNGIRK 729
>gi|306416422|gb|ADM87058.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|306416272|gb|ADM86983.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288188499|gb|ADC42723.1| pol protein [Human immunodeficiency virus 1]
gi|288188513|gb|ADC42730.1| pol protein [Human immunodeficiency virus 1]
gi|288188534|gb|ADC42740.1| pol protein [Human immunodeficiency virus 1]
gi|288188538|gb|ADC42742.1| pol protein [Human immunodeficiency virus 1]
gi|288188544|gb|ADC42745.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|255984280|gb|ACU46212.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKXGXAGYITNRGRQKVIPLTDTTNQXTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|169655816|gb|ABX80597.2| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|161936075|gb|ABX80615.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|126517816|gb|ABO16334.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI KV
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SKV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRKI 714
>gi|53829021|gb|AAU94503.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|53829061|gb|AAU94539.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|53829041|gb|AAU94521.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|15788258|gb|AAL07709.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VADSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|14289994|gb|AAK59181.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELYAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIQKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSRGIRK 713
>gi|23986222|gb|AAL12183.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGVRK 709
>gi|7583329|gb|AAA47633.2| pol polyprotein [Simian immunodeficiency virus]
gi|14600341|gb|AAK64194.1| pol polyprotein [Simian immunodeficiency virus 17E-Fr]
gi|14600351|gb|AAK64203.1| pol polyprotein [Simian immunodeficiency virus 17E-Cl]
gi|51105120|gb|AAT97120.1| pol protein [Simian immunodeficiency virus]
gi|53828991|gb|AAU94476.1| pol protein [Simian immunodeficiency virus]
gi|54312019|dbj|BAD66664.1| replication enzyme [Simian immunodeficiency virus]
gi|161936065|gb|ABX80606.1| pol protein [Simian immunodeficiency virus]
gi|227616|prf||1708139B pol gene
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|325636721|gb|ADZ34395.1| pol protein [Human immunodeficiency virus 1]
gi|325636733|gb|ADZ34405.1| pol protein [Human immunodeficiency virus 1]
gi|325636764|gb|ADZ34431.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306416402|gb|ADM87048.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416270|gb|ADM86982.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEDLIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|295413463|gb|ADG07942.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKSELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SDLVNQIIELLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984914|gb|ACU46529.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKIIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 143 GGNEKVDKLVSAGIRK 158
>gi|255984288|gb|ACU46216.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRKI 159
>gi|222428439|gb|ACM50081.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 598 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKIYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSAGIRK 715
>gi|167651345|gb|ABZ91138.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKIVSLTETTNQKSELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|156254421|gb|ABU62700.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVVTIPDTTNQKTELQAIYLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|115334413|dbj|BAF33153.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|115334383|dbj|BAF33126.1| Pol [Human immunodeficiency virus 1]
gi|115334403|dbj|BAF33144.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|110665965|gb|ABG81499.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSXSKVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|51921816|gb|AAU14042.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|51921796|gb|AAU14024.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|51593798|gb|AAU08021.1| pol protein [Simian immunodeficiency virus]
gi|51921806|gb|AAU14033.1| pol protein [Simian immunodeficiency virus]
gi|51921826|gb|AAU14051.1| pol protein [Simian immunodeficiency virus]
gi|53828971|gb|AAU94458.1| pol protein [Simian immunodeficiency virus]
gi|53829011|gb|AAU94494.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|51593808|gb|AAU08030.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|51243494|gb|AAT99447.1| pol protein [Simian immunodeficiency virus]
gi|51317208|gb|AAT99860.1| pol protein [Simian immunodeficiency virus]
gi|57012261|gb|AAW32413.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|50262236|gb|AAT72777.1| pol protein [Simian immunodeficiency virus]
gi|51593818|gb|AAU08039.1| pol protein [Simian immunodeficiency virus]
gi|53828981|gb|AAU94467.1| pol protein [Simian immunodeficiency virus]
gi|53829031|gb|AAU94512.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|18026828|gb|AAL55639.1|AF217181_2 pol protein [Simian-Human immunodeficiency virus]
gi|151413331|gb|ABS11162.1| pol protein [Simian-Human immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|2160378|dbj|BAA00863.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|11761607|gb|AAG38935.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|327458357|gb|AEA76618.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|327458267|gb|AEA76573.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325636702|gb|ADZ34379.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306477613|gb|ADM89181.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|306477611|gb|ADM89180.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|306477609|gb|ADM89179.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|255984312|gb|ACU46228.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|224986333|gb|ACN74896.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|238734222|gb|ACR55453.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFPDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|87083832|gb|ABD19493.1| pol protein [Simian immunodeficiency virus]
Length = 1013
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K+ S E TTN + EL A + AL +V +
Sbjct: 602 YVDGAANRETKLGKAGFV-TDRGRQKVTSISE--TTNQQAELQAVLMALQDAGQ--EVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G S ++ + E + ++ L W+ H G
Sbjct: 657 VTDSQYV-------------LGIIHSQPDKSESELVNQIIEELIKKERIYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 704 GGNEQIDKLVSTGIRK 719
>gi|42592274|emb|CAF28998.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 565
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 422 YVDGAANRETKLGKAGYVTDRGRQKVVPFADTTNQKTELQAINLALQ-----DSGLEVNI 476
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 477 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 523
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 524 GGNEQVDKLVSQGISK 539
>gi|38491510|gb|AAR21919.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI KV
Sbjct: 596 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SKV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAHPDRSEAELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSRGIRK 713
>gi|17864042|gb|AAL47036.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|49574379|gb|AAT66859.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1332362|gb|AAB00764.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 876
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 464 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 518
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 519 IVDSQYVMGISASQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 565
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 566 GGNQEVDHLVSQGIRQ 581
>gi|45360190|gb|AAS59223.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKTVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|327458339|gb|AEA76609.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSDXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNJIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|326416884|gb|ADZ73295.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416852|gb|ADZ73279.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416848|gb|ADZ73277.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416844|gb|ADZ73275.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416834|gb|ADZ73270.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416814|gb|ADZ73260.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416810|gb|ADZ73258.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416808|gb|ADZ73257.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416804|gb|ADZ73255.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416802|gb|ADZ73254.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|325125841|gb|ADY85171.1| Putative ribonuclease H [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 141
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 23 PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA----LTALKYPCKVLLYTDSSYV 78
W ++ + G +GG+ TNN+ME+ A +++ K+LL DS YV
Sbjct: 5 KAAWAYVILHDGHAMTATGGKVGATNNQMEMTAVLESLKALEDMGLSQKKLLLSLDSDYV 64
Query: 79 HK------GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGHAGN 131
K + WIK W++ GW+ S+ + V N DLW + + ++ + L + GHA +
Sbjct: 65 RKALSDSSNGTAWIKGWKERGWRKSNGEAVANPDLWKEIDKEFSKFSDLTLQHVTGHANS 124
Query: 132 QENEKVDRIARNAAVSF 148
N D +
Sbjct: 125 DGNNLADALVNEQMDKM 141
>gi|306477605|gb|ADM89177.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|306477603|gb|ADM89176.1| pol protein [Human immunodeficiency virus 1]
gi|306477607|gb|ADM89178.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|255984668|gb|ACU46406.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDXGRQKVVXJTXTTNQKTELQAICLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEXVYLSWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984178|gb|ACU46161.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKXVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984078|gb|ACU46111.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 642 GGNEKVDKLVSAGIRK 657
>gi|226348582|gb|ACO50610.1| pol protein [Human immunodeficiency virus 1]
Length = 736
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANKESKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIR 490
>gi|115334423|dbj|BAF33162.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|115334393|dbj|BAF33135.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|59003628|gb|AAW83627.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---ITDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|57901059|gb|AAW57828.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGAASRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIHAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGVRKI 713
>gi|54124760|gb|AAV30100.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFNDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|33328321|gb|AAQ09610.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + +V L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKERVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|14091524|gb|AAK53781.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGTEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|71726013|gb|AAZ39144.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|8843844|dbj|BAA97370.1| unnamed protein product [Arabidopsis thaliana]
Length = 316
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 38/141 (26%), Gaps = 18/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
DGA GNPG G +L + G TNN E I L K
Sbjct: 187 IIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKG 246
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
K+ + TDS V K + K + + +
Sbjct: 247 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEI------------- 293
Query: 126 KGHAGNQENEKVDRIARNAAV 146
H N D A AA
Sbjct: 294 -SHVLRSLNSDADEQANMAAR 313
>gi|306477971|gb|ADM89360.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVHLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477969|gb|ADM89359.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVHLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|304347437|gb|ADM25281.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSINDTTNQKTELQAIYLALQ-----DSXLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIXKEKVYLXWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|302594702|gb|ADL59539.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAASRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|256011392|gb|ACU55552.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984122|gb|ACU46133.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|224986223|gb|ACN74797.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|224986213|gb|ACN74788.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 598 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 651 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 698 GIGGNEQVDKLVSSGIRK 715
>gi|224986133|gb|ACN74716.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|222428667|gb|ACM50263.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|212382550|gb|ACJ25598.1| pol protein [Human immunodeficiency virus 1]
Length = 906
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRDTKMGKAGYVTDRGRQKVVPLTETTNQKTELQAIQLALQ-----DSGPEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIRKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 692 GGNEQVDKLVSNGIRK 707
>gi|167833487|gb|ACA02429.1| pol protein [Human immunodeficiency virus 1]
Length = 770
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSIADTTNQKTELQAIYLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSEXELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|58221028|gb|AAW68203.1| pol protein [Human immunodeficiency virus 1]
gi|212383271|gb|ACJ25923.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSISETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDESESEIVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 694 GGNEQIDKLVSNGIRK 709
>gi|51599140|gb|AAU08224.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ KV +
Sbjct: 592 YVDGAANKETKLGKAGYVTEQGRQKIIKLDETTNQKAELMAVLLALQ-----DSKEKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + + E + + +V L W+ H G
Sbjct: 647 VTDSQYVLGIISSQPTQSE-------------SPIVQQIIEELTNKEQVYLTWVPAHKGI 693
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 694 GGNEKIDKL 702
>gi|37221398|gb|AAQ89828.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221354|gb|AAQ89806.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGREKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221356|gb|AAQ89807.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGREKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|587129|emb|CAA85505.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 573
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|49574453|gb|AAT66892.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSRYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSTGIRK 558
>gi|9629916|ref|NP_046123.1| pol [Simian-Human immunodeficiency virus]
gi|2108165|gb|AAC57420.1| pol polyprotein [Simian-Human immunodeficiency virus]
gi|2828038|gb|AAB99959.1| pol [Simian-Human immunodeficiency virus]
gi|2828049|gb|AAB99969.1| pol [Simian-Human immunodeficiency virus]
gi|2895566|gb|AAD12135.1| pol protein [Simian-Human immunodeficiency virus]
gi|110816292|gb|ABG91807.1| pol protein [synthetic construct]
Length = 1059
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 647 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 703
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 704 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 748
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 749 GGNQEIDHLVSQGIRQ 764
>gi|84043939|gb|AAQ76649.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E ++ + +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGRQKSVSLTETTNQKTELQAIQL----ALQDSGSEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSKGIRK 657
>gi|306416208|gb|ADM86951.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289469820|gb|ADC96565.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKIGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288558559|dbj|BAI68336.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S + G G+ + +G++K++S E + + +V
Sbjct: 192 YVDGAASRDTKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAIXL----ALQDSGSEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|256010789|gb|ACU55251.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984454|gb|ACU46299.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S E T N+ + AI+ +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKIVSLXE---TTNQKAELQAIQLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|224986383|gb|ACN74941.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|224986373|gb|ACN74932.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|224986313|gb|ACN74878.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|224986123|gb|ACN74707.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|224986103|gb|ACN74689.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|110815942|sp|Q9QBZ1|POL_HV1M2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1434
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 1027 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 1079
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 1080 NIVTDSQYA-------------LGIIQAHPDKSESEIVNQIIEQLIQKERVYLSWVPAHK 1126
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 1127 GIGGNEQVDKLVSTGIRK 1144
>gi|156254343|gb|ABU62661.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|115334513|dbj|BAF33243.1| Pol [Human immunodeficiency virus 1]
Length = 1000
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIR 709
>gi|23986252|gb|AAL12201.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|23986208|gb|AAL12174.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|13569319|gb|AAK31054.1|AF286234_2 truncated pol polyprotein [Human immunodeficiency virus 1]
Length = 816
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 599 YVDGAANRESKIGKAGYITDRGRQKIITLAETTNQKAELQAIQLALQ-----DSGSKVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 ATDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIGKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|68521965|gb|AAY98569.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KII+ E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIITLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|328834614|gb|AEB53004.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTGRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637894|gb|ADZ35386.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVSITNTTNQKTELQAIYLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSKGIRK 719
>gi|307091502|gb|ADN28092.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDSSESELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|307091493|gb|ADN28084.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAVQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SALVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|288187714|gb|ADC42348.1| pol protein [Human immunodeficiency virus 1]
Length = 667
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKTGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011404|gb|ACU55558.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAILLALQ-----DAGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEZLIXKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010899|gb|ACU55306.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVFLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256010869|gb|ACU55291.1| pol protein [Human immunodeficiency virus 1]
Length = 944
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTNKGRQKVITLADTTNQKTELHAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|255984584|gb|ACU46364.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984850|gb|ACU46497.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984866|gb|ACU46505.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|224986343|gb|ACN74905.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|222428637|gb|ACM50239.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRDTKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|112497892|gb|ABI20294.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|57869618|gb|AAW57663.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRKKIVSLTETTNQKTELQAICL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q S + V I + E +V L W+ H
Sbjct: 645 NIVTDSQYA--------LGIIQAQPDKSKSELVNQIIEQLIKKE-----RVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G ENE+VD++ +
Sbjct: 692 GIGENEQVDKLVSSGIRK 709
>gi|55792411|gb|AAV65321.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|55792401|gb|AAV65312.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|51593828|gb|AAU08048.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|50262244|gb|AAT72784.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 704
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 705 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 749
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 750 GGNQEIDHLVSQGIRQ 765
>gi|37682861|gb|AAQ98438.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|25166639|gb|AAN73447.1|AF484478_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1431
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 1024 YVDGAANRETKLGKAGY---VTDRGRQKVVSLDE--TTNQKAELHAILLALQDSG--SEV 1076
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 1077 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 1123
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 1124 GIGGNEQVDKLVSSGIRKI 1142
>gi|73913874|gb|AAZ91847.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|16118351|gb|AAL12719.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ++ A++ KV +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNKGRQKVVSLNDTTNQKTELQAILLALQ-----DSGLKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|326416830|gb|ADZ73268.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIR 656
>gi|295883836|gb|ADG57068.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|289187201|gb|ADC92180.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGREVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984054|gb|ACU46099.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|222428583|gb|ACM50196.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|167651305|gb|ABZ91102.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQ-----DSGPEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLINKERVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|126567759|gb|ABO21058.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELXGKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|108860367|dbj|BAE95892.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|63098381|gb|AAY32424.1| pol protein [Human immunodeficiency virus 1]
gi|212383129|gb|ACJ25863.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKVVTLNETTNQKTELQAIQL----ALQDSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRKI 710
>gi|9368370|emb|CAB98187.1| POL protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K++S E ++ + +V +
Sbjct: 600 YVDGAANRETKIGKAGYV-TDRGRQKVVSLTETTNQKTELQAINL----ALQDSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 655 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLINKEKVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|14091508|gb|AAK53773.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SQV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGVRK 558
>gi|312601882|gb|ADQ92498.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGEAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|310799120|gb|EFQ34013.1| hypothetical protein GLRG_09157 [Glomerella graminicola M1.001]
Length = 213
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 16/153 (10%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKE--TTNNRMELMAA------ 56
+ Y DGAC P G WGV + T+ R E+ A
Sbjct: 59 SLVVYIDGACRDVGTPSARGSWGVYFGPGSRHNRRGLLAPALAQTSARAEIEALARALDA 118
Query: 57 -IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL----WMKF 111
+ + ++ + T S Y+ S WI W +N + V + + +
Sbjct: 119 LREVTARDRSLTQIKIATGSEYLANAMSLWIGDWIENEGINARGHRVAHFETLRELHERL 178
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + L + +ENE+ ++A A
Sbjct: 179 DDMTYGDDGGLDVMFWPIPREENEEAHKLANEA 211
>gi|260533725|gb|ACX45125.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSQVNIVTDSQYALGIIQAQPDKSESEVVNQIIEKLIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|256010769|gb|ACU55241.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIXKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984360|gb|ACU46252.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNRGRQKVXPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255983950|gb|ACU46047.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNRGRQKVISLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|294946923|ref|XP_002785212.1| hypothetical protein Pmar_PMAR026321 [Perkinsus marinus ATCC 50983]
gi|239898818|gb|EER17008.1| hypothetical protein Pmar_PMAR026321 [Perkinsus marinus ATCC 50983]
Length = 224
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Query: 10 HAYTDGA---CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
H + DG+ SG G G GV+ + T + +
Sbjct: 75 HIFCDGSRIGGSGLTGRIGSGVVELAPSNKDAAVVWFSYTRLPDYATVMQGELRGIEAAA 134
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ ++ + + ++ + A+A + + W +
Sbjct: 135 DRLTSTRNNPLKQAVIYSDSQAAIRAVVGRGKLESTSVRNARRAVERAAASCDLVVQWTR 194
Query: 127 GHAGNQENEKVDRIARNA 144
HAG NE D +AR
Sbjct: 195 AHAGISGNEIADTLARLG 212
>gi|212382980|gb|ACJ25789.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVVSISDTTNQKTELQAIQLALQ-----DSGAEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 708 GGNEQVDKLVSSGIRK 723
>gi|159031763|dbj|BAF91853.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|221068960|ref|ZP_03545065.1| ribonuclease H [Comamonas testosteroni KF-1]
gi|220713983|gb|EED69351.1| ribonuclease H [Comamonas testosteroni KF-1]
Length = 148
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 15/138 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ NPGP GVLL+ G +S + N + A+ A L
Sbjct: 14 IHIDGSALPNPGPMSLGVLLQLPDGSRHTLSQNLHRSGCNNEAELRALMAALKLARDLGA 73
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK---FVEASAQHKVDLYWIK 126
+ +Q G T+ + + ++ L W+
Sbjct: 74 RS-------LTVRTDSQVLLEQLGPPTAKPARPIARLATLFEAARAQMQDFDELVLQWVP 126
Query: 127 GHAGNQENEKVDRIARNA 144
H N + D +AR A
Sbjct: 127 RHR----NTEADALARMA 140
>gi|57869694|gb|AAW57731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEVVD-------------QIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|55275197|gb|AAV49415.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++A +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQASG-----SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|54111971|gb|AAV28695.1| pol [Simian-Human immunodeficiency virus]
Length = 1059
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 647 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 703
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 704 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 748
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 749 GGNQEIDHLVSQGIRQ 764
>gi|992561|gb|AAA99879.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1027
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ V +
Sbjct: 610 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQ-----DSKETVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 665 VTDSQYALGVISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 711
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 712 GGNEKIDKL 720
>gi|328834054|gb|AEB52506.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGKAGY---VTDRGRQKVISLTE---TTNQKAELHAIHLALQDSEL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKE-------------RVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|306416466|gb|ADM87080.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R A T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLAETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416350|gb|ADM87022.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416294|gb|ADM86994.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306416224|gb|ADM86959.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289609567|emb|CBI60423.1| unnamed protein product [Sordaria macrospora]
Length = 144
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 112 VEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ VD+ W+ H G NE D +A+ A +
Sbjct: 107 CKNYGPRLVDVRWVPDHKGITGNEIADELAKAGAEGER 144
>gi|289449317|dbj|BAI77514.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|255984204|gb|ACU46174.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|224986393|gb|ACN74950.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|212382795|gb|ACJ25705.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 590 YVDGAANRETRLGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ-----DSGSKVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKDRVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 692 GGNEQVDKLVSSGIRK 707
>gi|148745867|emb|CAK49322.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKSELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|23986236|gb|AAL12192.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|22596505|gb|AAN03266.1|AF457083_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKVVPLAETTNQKTELYAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRKI 713
>gi|49574400|gb|AAT66868.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|49574447|gb|AAT66889.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|16755678|gb|AAL28068.1| pol protein [synthetic construct]
gi|16798504|gb|AAL29457.1| pol protein [synthetic construct]
Length = 739
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 608 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTQLQAIYLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 663 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|88174638|gb|ABD39384.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|85700565|gb|ABC74677.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKKGKAGYVTDKGRQKIVSLTETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQALPDKSE-------------SELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|60652074|gb|AAX33144.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSIADTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|14488552|pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
gi|14488556|pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
gi|14488558|pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTQLQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|14488554|pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
gi|291191124|pdb|3ISN|C Chain C, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
gi|291191126|pdb|3ITH|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
gi|291191128|pdb|3ITH|C Chain C, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTQLQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|327458343|gb|AEA76611.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325637848|gb|ADZ35348.1| pol protein [Human immunodeficiency virus 1]
gi|325637853|gb|ADZ35352.1| pol protein [Human immunodeficiency virus 1]
gi|325637858|gb|ADZ35356.1| pol protein [Human immunodeficiency virus 1]
gi|325637863|gb|ADZ35360.1| pol protein [Human immunodeficiency virus 1]
gi|325637875|gb|ADZ35370.1| pol protein [Human immunodeficiency virus 1]
gi|325637918|gb|ADZ35406.1| pol protein [Human immunodeficiency virus 1]
gi|325637930|gb|ADZ35416.1| pol protein [Human immunodeficiency virus 1]
gi|325637956|gb|ADZ35438.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVSITNTTNQKTELQAIYLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSKGIRK 719
>gi|289187274|gb|ADC92216.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLXDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|289187223|gb|ADC92191.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288188517|gb|ADC42732.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011444|gb|ACU55578.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEELIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
Length = 466
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKG----KEKIISGGEKETTNNRMELMAA---IKALT 61
+ + + + N G V L +K+ G + + ELMA I +
Sbjct: 130 ITVFFNASGQQN-ALGAAAVALDQNHNIIQHQKVCIGSIEYWSVYTAELMAIYYAISLVL 188
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +V+L + + + + + +
Sbjct: 189 KIAMENQVILVGQQEPATILSDSMSALQAISNTRNKSGQRIIQAVQQAAQELKARGIPLC 248
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
L W+ GH N NE +R+A+ A
Sbjct: 249 LQWMPGHCDNPGNEAANRLAKEA 271
>gi|134284792|gb|ABO69483.1| pol [Feline immunodeficiency virus]
Length = 1153
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL + ++
Sbjct: 615 YIDGGRKKGQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 668
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 669 --TDSQYVYNMI--------------RARPEPSDPLWKEIIEELHKKEKIFLDWVPGHKG 712
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 713 IPGNKEIDEL 722
>gi|156254355|gb|ABU62667.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN R EL A AL +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LTDTTNQRTELQAIYLALQDSG--SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + +V L W+ H
Sbjct: 54 NIVTDSQYALGIIQTQPDKSESELVSQIIEKLINKE-------------RVYLAWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSAGIR 117
>gi|93210943|gb|ABF00893.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + ETTN + EL A L +V +
Sbjct: 599 YVDGAAHRETKIGKAGYVTDRGRQKIVS---LTETTNQKAELHAV--QLALQDSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKDRVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|37682540|gb|AAQ98226.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|37221378|gb|AAQ89818.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSQVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221382|gb|AAQ89820.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSQVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221380|gb|AAQ89819.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSQVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|27448795|gb|AAO13960.1|AF447763_2 pol [Simian immunodeficiency virus]
gi|147744242|gb|ABQ51060.1| pol protein [Simian immunodeficiency virus]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + + S + TTN + EL A AL +V +
Sbjct: 592 YVDGAANRDSKKGRAGYV---TNRGRYRSKDLENTTNQQAELWAVDLALKDSG--AQVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 647 VTDSQYVMGVLQGLPDQS-------------DSPIVEQIIQKLTQKTAIYLAWVPAHKGI 693
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 694 GGNEEVDKL 702
>gi|9626653|ref|NP_040939.1| pol protein [Caprine arthritis-encephalitis virus]
gi|323296|gb|AAA91826.1| pol protein [Caprine arthritis encephalitis virus]
Length = 1105
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G ++ K + G + R A + + L
Sbjct: 578 YTDGGKKN--KVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN------L 629
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + ++ ++W+ GH G
Sbjct: 630 VTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKD-----------RIGVHWVPGHKGI 678
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +A+
Sbjct: 679 PQNEEIDKYISEIFLAKEG 697
>gi|13891846|gb|AAG50302.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13891848|gb|AAG50303.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13891850|gb|AAG50304.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|82571290|gb|ABB84059.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 592 YVDGAANKETRTGKAGYVTDRGRQKVVTITETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKDRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|289187060|gb|ADC92110.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRGTKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011338|gb|ACU55525.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|255984038|gb|ACU46091.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|224986293|gb|ACN74860.1| pol protein [Human immunodeficiency virus 1]
Length = 995
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 588 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-TEV 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 641 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 687
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 688 GIGGNEQVDKLVSSGIRK 705
>gi|222428449|gb|ACM50089.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K+IS + T N+ + AI +V +
Sbjct: 596 YVDGAANRDT-KAGKAGYVTDRGRQKVISLTD---TTNQKTELQAIHLALQDSGV-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|325635878|gb|ADZ33676.1| pol protein [Human immunodeficiency virus 1]
Length = 964
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGKQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKKRVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRK 717
>gi|288187801|gb|ADC42389.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|282598134|gb|ADA83363.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE--TTNQRTELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + ++ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKERIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011738|gb|ACU55725.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETRXGKAGYVTDRGRQKVAHLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEELIKKEXVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010835|gb|ACU55274.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRSGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|255984402|gb|ACU46273.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKVVXLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|224986273|gb|ACN74842.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|117940230|gb|ABK58245.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 602 YVDGAANRETRLGKAGY---VTDKGRQKVVSLTDTTNQQTELQAINL----ALQDSGSEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSQGIRRI 720
>gi|159031767|dbj|BAF91855.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|158931164|sp|Q8AII1|POL_SIVTN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + + S + TTN + EL A AL +V +
Sbjct: 1055 YVDGAANRDSKKGRAGYV---TNRGRYRSKDLENTTNQQAELWAVDLALKDSG--AQVNI 1109
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 1110 VTDSQYVMGVLQGLPDQS-------------DSPIVEQIIQKLTQKTAIYLAWVPAHKGI 1156
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 1157 GGNEEVDKL 1165
>gi|55275147|gb|AAV49370.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSIPDTTNQKTELQAINL----ALQDSGSEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|13095217|gb|AAK12187.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 443 YVDGAANRETKLGEAGYVTDKGRQKVVS---ITDTTNQRTELQAIHLALQDSGL--EVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|22297041|gb|AAM94497.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 46.0 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + +E + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDRGRQEVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|327458337|gb|AEA76608.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQXVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|326416854|gb|ADZ73280.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416812|gb|ADZ73259.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S E T N+ + AI+ P +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|312602016|gb|ADQ92563.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRSGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|302781666|ref|XP_002972607.1| hypothetical protein SELMODRAFT_413093 [Selaginella moellendorffii]
gi|300160074|gb|EFJ26693.1| hypothetical protein SELMODRAFT_413093 [Selaginella moellendorffii]
Length = 411
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 30/167 (17%)
Query: 10 HAYTDGACS-GNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-------- 57
+ +TDG+ G G+GV + ++ + + + A
Sbjct: 195 NVFTDGSLIVPEGGEAVKAGYGVYYVWCNGGCGLAKHVQGNSRISYDAWAMDGSRKIRII 254
Query: 58 -------KALTALKYPCKVLLYTDSSYVH-----KGFSQWIKKWQQNGWKTSDKKTVKNI 105
++ ++ + ++ + + +
Sbjct: 255 ELALGGDESALTMELLAILEALLLVQSFWGYSRLYLYTDSMAALKLLAEFQKRPGSFARH 314
Query: 106 DL------WMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+S V L ++ HAG NE DR+A+ A
Sbjct: 315 VHGEVLAAITSVARSSYIEHVHLLKVRAHAGLFGNEAADRLAKIGAN 361
>gi|288188525|gb|ADC42736.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011676|gb|ACU55694.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S T N+ + AI +V +
Sbjct: 599 YVDGAANRET-KMGKAGYVTDRGRQKXVS---LNDTTNQKTELQAIHLALQDSGL-EVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|256011206|gb|ACU55459.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKQGKAGYVTBRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|256011072|gb|ACU55392.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984650|gb|ACU46397.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984084|gb|ACU46114.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLAL-----XDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|242276506|gb|ACS91485.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI+ +V
Sbjct: 599 YVDGASNRETKQGKAGY---VTDRGRQKAVSLTE---TTNQKAELQAIQLALQDSG-SEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 652 NIVTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIQKDKVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSAGIRK 716
>gi|46254405|gb|AAS86164.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|45361147|gb|AAS59359.1| pol protein [Human immunodeficiency virus 1]
Length = 913
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 506 YIDGAASRETKQGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAVHLALQDSG--SEV 558
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 559 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 605
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 606 GIGGNEQVDKLVSSGIRK 623
>gi|49574445|gb|AAT66888.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANREAKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIMEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|327458201|gb|AEA76540.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327294337|ref|XP_003231864.1| ribonuclease HI [Trichophyton rubrum CBS 118892]
gi|326465809|gb|EGD91262.1| ribonuclease HI [Trichophyton rubrum CBS 118892]
Length = 178
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 41/140 (29%), Gaps = 13/140 (9%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK----ETTNNRMELMAAIKALTALK 64
+ DGACS N L Y G + E TN + ELMAAIKAL K
Sbjct: 45 IVIAVDGACSNNGTLYAQASLGIYFGSRYSFNISLALDIDEPTNQKAELMAAIKALQIGK 104
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
C Y S + + V +
Sbjct: 105 GICSNGRYGKPIVNVTIKSDSEYLGKPVVN-----GEFFKWLDECILDLNAEGVAVHFWH 159
Query: 125 IKGHAGNQENEKVDRIARNA 144
++ N DR+A+ A
Sbjct: 160 VE----RAYNRHADRLAKQA 175
>gi|306477595|gb|ADM89172.1| pol protein [Human immunodeficiency virus 1]
gi|306477597|gb|ADM89173.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKAELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|212382734|gb|ACJ25677.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI+ P +V +
Sbjct: 597 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELHAIQIALQDSGP-EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|156254403|gb|ABU62691.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSELEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|55275127|gb|AAV49352.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|37683017|gb|AAQ98575.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|1055031|gb|AAA81037.1| POL polyprotein precursor [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|86753663|gb|ABD15080.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANKETKIGKAGYVTDRGRQKIVSLNETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + +V L W+ H G
Sbjct: 648 ITDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|83722645|ref|YP_443922.1| polyprotein [Atlantic salmon swim bladder sarcoma virus]
gi|76786463|gb|ABA54982.1| polyprotein [Atlantic salmon swim bladder sarcoma virus]
Length = 2146
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 2 DSKHLREVHAYTDGACSG--NPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAI 57
D ++ YTDG C + + V+ + + SG + + ++ + +
Sbjct: 1568 DPLPQADLWLYTDGCCYRGKDGNIAAYAVVQQDSNGNHSTLESGVIPQPASAQLAEIIGL 1627
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASA 116
L V +YTDS+Y H +W + + T+ +K+ + +
Sbjct: 1628 TRALTLAEGKTVNIYTDSAYAHGAVHIDGPQWLRRNFTTTGNLPIKHKTQMEVLISAVAL 1687
Query: 117 QHKVDLYWIKGHA 129
KV + KGH
Sbjct: 1688 PKKVAIMKCKGHQ 1700
>gi|327458341|gb|AEA76610.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416286|gb|ADM86990.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288558531|dbj|BAI68322.1| polyprotein [Human immunodeficiency virus 1]
Length = 326
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + ++ + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDSSESEVVSQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|255984542|gb|ACU46343.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255983958|gb|ACU46051.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|212382584|gb|ACJ25612.1| pol protein [Human immunodeficiency virus 1]
Length = 935
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKMGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|172044078|sp|O12158|POL_HV192 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1431
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 1024 YVDGAANREI-KMGKAGYVTDRGRQKIVSITETTNQKTELQAIQL----ALQDSGSEVNI 1078
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1079 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 1125
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1126 GGNEQVDKLVSSGIRK 1141
>gi|158967438|gb|ABW86778.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIXKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRK 713
>gi|145601645|ref|XP_001403050.1| hypothetical protein MGG_14354 [Magnaporthe oryzae 70-15]
gi|145010154|gb|EDJ94810.1| hypothetical protein MGG_14354 [Magnaporthe oryzae 70-15]
Length = 210
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 78 EVRVRWCPGHQGIPGNDRADELAKAG 103
>gi|119370130|gb|ABL68019.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E ++ + +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKSVSLTETTNQKTELQAIQL----ALQDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSKGIRK 709
>gi|18073412|emb|CAC88002.1| POL protein [Human immunodeficiency virus 1]
Length = 1018
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+++ E TTN + EL A AL +
Sbjct: 611 YVDGAANRET-KMGKAGYITDKGRQKVVTLTE--TTNQKAELEAIHLALQDSGLEANI-- 665
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 666 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIMKEKVYLSWVPAHKGI 712
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 713 GGNEQVDKLVSSGVRK 728
>gi|49574455|gb|AAT66893.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|61102602|gb|AAX37739.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI +V +
Sbjct: 20 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELQAIHLALQDSG-SEVNI 74
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 75 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 122 GGNEQVDKLVSSGIRK 137
>gi|16118252|gb|AAL12632.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKKGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|306416340|gb|ADM87017.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416204|gb|ADM86949.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R + T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLSETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|304347445|gb|ADM25285.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVXLNDTTNQKTELXAIHLALQ-----DSXXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187676|gb|ADC42329.1| pol protein [Human immunodeficiency virus 1]
Length = 667
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|281331916|emb|CAY83134.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1435
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1028 YVDGAANRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1081 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIQKDKVYLSWVPAHK 1127
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1128 GIGGNEQVDKLVSSGIRK 1145
>gi|212383337|gb|ACJ25947.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++KI++ E T N+ + AI+ +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKIVTLSE---TTNQKAELQAIQLALQDSG-SEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLITKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212382902|gb|ACJ25751.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLSETTNQKTELQAIQL----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|122913057|gb|ABM68054.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKQGKAGYVTDRGRQKVVSLTRTTNQKAELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIQKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|148361700|gb|ABQ59393.1| pol protein [Human immunodeficiency virus 1]
Length = 775
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKJGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|114841802|dbj|BAF32247.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTEA---TNQQTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|49574449|gb|AAT66890.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|68522085|gb|AAY98677.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVVSISDTTNQKTELQAIQLALQ-----DSGAEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 708 GGNEQVDKLVSSGIRK 723
>gi|85083230|ref|XP_957077.1| hypothetical protein NCU05091 [Neurospora crassa OR74A]
gi|28881376|emb|CAD70417.1| hypothetical protein [Neurospora crassa]
gi|28918162|gb|EAA27841.1| predicted protein [Neurospora crassa OR74A]
Length = 614
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 21/150 (14%)
Query: 8 EVHAYTDGACSGNPG--PGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAA--- 56
+ +TD + PGG+ V+ + +E++ A
Sbjct: 68 TIAFFTDASVEEKTPDLPGGYSVVFDNFFPGTHHYRERLGMAWLMPNMITSTIGEAVGIL 127
Query: 57 --IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
++ + +S + Q V +I + F+E
Sbjct: 128 QALQVAIHHLRAIAISPADTASARRVTLCIFSDAHQVIRLIKCQNLNVGDIPGFDVFLE- 186
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
L+W+KGHAG +EN++ D IAR A
Sbjct: 187 -------LHWVKGHAGVEENDQADLIARRA 209
>gi|325634659|gb|ADZ32631.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 612 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 667 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 713
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 714 GGNEQVDKLVSNGIRK 729
>gi|325634651|gb|ADZ32624.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 612 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 667 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 713
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 714 GGNEQVDKLVSNGIRK 729
>gi|325634635|gb|ADZ32610.1| pol protein [Human immunodeficiency virus 1]
gi|325634675|gb|ADZ32645.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 612 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 667 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 713
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 714 GGNEQVDKLVSNGIRK 729
>gi|288558515|dbj|BAI68315.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 292 GIGGNEQVDKLVSNGIRK 309
>gi|256011358|gb|ACU55535.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256011096|gb|ACU55404.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANKETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVXQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|255984654|gb|ACU46399.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBXGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKXKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984558|gb|ACU46351.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984212|gb|ACU46178.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|38892671|gb|AAR27673.1| pol protein [Human immunodeficiency virus 1]
gi|212382566|gb|ACJ25604.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKVVTITETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|13095355|gb|AAK12241.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---ITDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|22596525|gb|AAN03284.1|AF457085_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K+++ E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDKGRQKVVALTETTNQKTELQAIKL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|49574451|gb|AAT66891.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTSRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306416356|gb|ADM87025.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416476|gb|ADM87085.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|288558569|dbj|BAI68341.1| polyprotein [Human immunodeficiency virus 1]
Length = 326
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 292 GIGGNEQVDKLVSNGIRK 309
>gi|282598105|gb|ADA83338.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|226348748|gb|ACO50693.1| pol protein [Human immunodeficiency virus 1]
Length = 745
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 369 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 423
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 424 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 470
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 471 GGNEQVDKLVSAGIRKI 487
>gi|226348708|gb|ACO50673.1| pol protein [Human immunodeficiency virus 1]
Length = 749
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 476 GGNERVDKLVSAGIRKI 492
>gi|157273983|gb|ABV28257.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 700 GGNEKVDKLVSEGIRK 715
>gi|58220940|gb|AAW68124.1| gag protein [Human immunodeficiency virus 1]
Length = 1437
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1030 YVDGAANRETKVGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ-----DSGSEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1132 GGNEQVDKLVSSGIRK 1147
>gi|57869655|gb|AAW57696.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEKLIEKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|45361075|gb|AAS59305.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 590 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKGRVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 692 GGNEQVDKLVSKGIRK 707
>gi|84043941|gb|AAQ76652.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGIRK 657
>gi|327475009|gb|AEA77111.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|327458319|gb|AEA76599.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTXRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|326370852|gb|ADZ56607.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|312601949|gb|ADQ92531.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVS---LADTTNQRTELQAIHLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416378|gb|ADM87036.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416442|gb|ADM87068.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416312|gb|ADM87003.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416252|gb|ADM86973.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416186|gb|ADM86940.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|263201022|gb|ACY70118.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKAELQAIQIALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSKGIRK 712
>gi|256011778|gb|ACU55745.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|255984716|gb|ACU46430.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAASRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHNGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 143 GGNEKVDKLVSSGIRK 158
>gi|224986233|gb|ACN74806.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEAVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|167651355|gb|ABZ91147.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S + ++ + +V +
Sbjct: 595 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTDTTNQKTELQAIQL----ALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|196475192|gb|ABB96442.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|156040838|ref|XP_001587405.1| hypothetical protein SS1G_11397 [Sclerotinia sclerotiorum 1980]
gi|154695781|gb|EDN95519.1| hypothetical protein SS1G_11397 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 398
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 8/148 (5%)
Query: 7 REVHAYTDGAC-SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ ++DG+ G G G G ++ E + A A
Sbjct: 131 NDLQVFSDGSKNKGKDGATGGGYIVTQYDIEVARHLFSLGLNTEVFDTEATAATRGAAAA 190
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK------TVKNIDLWMKFVEASAQHK 119
+ + + + + S + + + +
Sbjct: 191 LAQPSARFAKDLWIFLDNYEVTLRLGSHFNGSSQSVFDEFLDISRAWAQRPRLPHLPPSE 250
Query: 120 VDLYWIKGHAGNQENEKVDRIARN-AAV 146
+ + W+ GH NE VD+ A+ AA+
Sbjct: 251 IRIRWVPGHLNILGNEAVDKAAKERAAL 278
>gi|49574294|gb|AAT66818.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574355|gb|AAT66847.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|49574359|gb|AAT66849.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|464433|sp|P33459|POL_CAEVC RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1109
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G ++ K + G + R A + + L
Sbjct: 582 YTDGGKKN--KVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN------L 633
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + ++ ++W+ GH G
Sbjct: 634 VTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKD-----------RIGVHWVPGHKGI 682
Query: 132 QENEKVDR------IARNA 144
+NE++D+ +A+
Sbjct: 683 PQNEEIDKYISEIFLAKEG 701
>gi|228483814|gb|ACQ42721.1| pol protein [Human immunodeficiency virus 1]
Length = 714
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|312601803|gb|ADQ92461.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNERVDKLVSAGIRK 657
>gi|306416440|gb|ADM87067.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E TTN + EL A AL + +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAVHLALQDSE--SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSELVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|295314149|gb|ADF97402.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 705 GGNEQVDKLVSAGIRK 720
>gi|288188523|gb|ADC42735.1| pol protein [Human immunodeficiency virus 1]
Length = 552
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 433 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 487
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 488 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 534
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 535 GGNEQVDKLVSAGIRK 550
>gi|256010823|gb|ACU55268.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 599 YVDGAASRETKSGKAGYVTNRGRQKVISLTDTTNQQTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESXLVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|224986163|gb|ACN74743.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|227549968|ref|ZP_03980017.1| hypothetical protein HMPREF0298_2281 [Corynebacterium
lipophiloflavum DSM 44291]
gi|227077984|gb|EEI15947.1| hypothetical protein HMPREF0298_2281 [Corynebacterium
lipophiloflavum DSM 44291]
Length = 319
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 11 AY-TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y TD + + G + GK K++S T L + + +V
Sbjct: 142 VYATDASKRKSNKVVGIAAVDTSGGKCKVLSRV----TCATAVLEG--EFVAVHMLLEQV 195
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGH 128
D+ + N + + A V + W++GH
Sbjct: 196 RHSPDAIELDIITDSLTVARVMNADARRPFALDYERRAMAELDKVRACGVTVRVSWVRGH 255
Query: 129 AGNQENEKVDRIARNA 144
AGN NE DR A +A
Sbjct: 256 AGNPLNELADRAAVSA 271
>gi|226348614|gb|ACO50626.1| pol protein [Human immunodeficiency virus 1]
Length = 744
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 429 VTDSQYALGIIQGHPDKSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|167833576|gb|ACA02488.1| pol protein [Human immunodeficiency virus 1]
Length = 759
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQ-----DSGPEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|156254391|gb|ABU62685.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1 YVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|55275137|gb|AAV49361.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|14091540|gb|AAK53789.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574461|gb|AAT66896.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|326416806|gb|ADZ73256.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416796|gb|ADZ73251.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416794|gb|ADZ73250.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|325638614|gb|ADZ35994.1| pol protein [Human immunodeficiency virus 1]
gi|325638637|gb|ADZ36014.1| pol protein [Human immunodeficiency virus 1]
gi|325638661|gb|ADZ36035.1| pol protein [Human immunodeficiency virus 1]
gi|325638685|gb|ADZ36056.1| pol protein [Human immunodeficiency virus 1]
gi|325638738|gb|ADZ36102.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETRLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRKI 718
>gi|321268185|gb|ADW78894.1| truncated pol protein [synthetic construct]
Length = 857
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|307568197|pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRKI 561
>gi|306416230|gb|ADM86962.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|297787684|pdb|3LP3|A Chain A, P15 Hiv Rnaseh Domain With Inhibitor Mk3
gi|297787685|pdb|3LP3|B Chain B, P15 Hiv Rnaseh Domain With Inhibitor Mk3
Length = 138
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 17 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 71
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 72 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 118
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 119 GGNEQVDKLVSAGIRKI 135
>gi|288563039|pdb|3K2P|A Chain A, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
gi|288563040|pdb|3K2P|B Chain B, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
Length = 136
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 17 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 71
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 72 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 118
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 119 GGNEQVDKLVSAGIRKI 135
>gi|288187539|gb|ADC42264.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQRVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256010917|gb|ACU55315.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984554|gb|ACU46349.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIXKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984526|gb|ACU46335.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGAEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|256252374|dbj|BAH97407.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|224986143|gb|ACN74725.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|158967389|gb|ABW86734.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRK 713
>gi|157274023|gb|ABV28293.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIRKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|149051045|gb|EDM03218.1| ribonuclease H1, isoform CRA_b [Rattus norvegicus]
Length = 200
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMA 55
V YTDG CS N G GV + TN R E+
Sbjct: 138 SVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHV 188
>gi|122920579|pdb|2IAJ|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
gi|122920582|pdb|2IC3|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|116518672|gb|ABJ99557.1| pol protein [Human immunodeficiency virus 1]
gi|222428544|gb|ACM50165.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGASSRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|93210933|gb|ABF00884.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKTISLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEYLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSRGIRK 709
>gi|46254787|gb|AAS86325.1| pol protein [Simian immunodeficiency virus]
Length = 645
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + N G G + + + G + A++ KV +
Sbjct: 343 YVDGAANKNSKLGKAGYVTDTGYSKVVHLEGTTNQKAELEAIKLALQ-----DSGSKVNI 397
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S TS + + + + +V + W+ GH G
Sbjct: 398 VTDSQYVLGIIS---------AQPTSSDHPIVEDIIQLLLGKD----QVYITWVPGHKGI 444
Query: 132 QENEKVDRI 140
N +VDR+
Sbjct: 445 GGNVEVDRL 453
>gi|38679142|gb|AAR26396.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SDLVNQIIEQLIQKERVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|37682948|gb|AAQ98513.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 601 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 641 AIYLALQDSGTEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIQKEKVYLSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|37682701|gb|AAQ98294.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESKVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIR 711
>gi|29119277|gb|AAO63197.1| pol protein [Human immunodeficiency virus 1]
gi|256252384|dbj|BAH97416.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|4324862|gb|AAD17126.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 1122 GGNEQIDKLVSKGIRK 1137
>gi|49574443|gb|AAT66887.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|86753513|gb|ABD14945.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKIGKAGYVTDKGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 701 GGNEQIDKLVSSGIRK 716
>gi|49258902|pdb|1S6P|A Chain A, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
gi|49258904|pdb|1S6Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
gi|49258917|pdb|1S9E|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
gi|49258919|pdb|1S9G|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
gi|49259158|pdb|1SUQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
gi|82408012|pdb|2B6A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
gi|83754238|pdb|2B5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
gi|83754343|pdb|2BAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
gi|83754368|pdb|2BE2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|230011|pdb|1HRH|A Chain A, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
gi|230012|pdb|1HRH|B Chain B, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
Length = 136
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 15 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 69
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 70 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 116
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 117 GGNEQVDKLVSAGIRKI 133
>gi|576255|pdb|1RDH|A Chain A, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
gi|576256|pdb|1RDH|B Chain B, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
Length = 146
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 27 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 81
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 82 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 128
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 129 GGNEQVDKLVSAGIRKI 145
>gi|999814|pdb|1HMV|A Chain A, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
gi|51247751|pdb|1TV6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
gi|157878214|pdb|1HMV|C Chain C, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
gi|157878216|pdb|1HMV|E Chain E, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
gi|157878218|pdb|1HMV|G Chain G, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|14488665|pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
gi|14488667|pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
gi|14488669|pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
gi|49259160|pdb|1SV5|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|331249177|ref|XP_003337207.1| hypothetical protein PGTG_18567 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316197|gb|EFP92788.1| hypothetical protein PGTG_18567 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 510
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 7/141 (4%)
Query: 9 VHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTALKY 65
+ ++DG+ C P GG G K G +N+ + I
Sbjct: 226 ISIFSDGSFC---PDKGGLGADFCPKLNSYSTLSLGNNSVISNHEAKAAWLIAVTKMAST 282
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C+ + ++ K +++ N+ +V + W
Sbjct: 283 LCRDWRIRRIVFFVDNKGVILRTMNPASPKRKPGQSLFNLIDESLS-ALPLTTEVFMAWC 341
Query: 126 KGHAGNQENEKVDRIARNAAV 146
G NE D +AR A +
Sbjct: 342 PGQRDILGNEVADELAREAVL 362
>gi|306416216|gb|ADM86955.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R A T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLAETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011480|gb|ACU55596.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VSDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010753|gb|ACU55233.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRXTKIGKAGYVTDRGRQKVVPITDTTNQKTELQAINLALQ-----DXGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984750|gb|ACU46447.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVSITDTTNQKTELQAIXL----ALQDSGSEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|255984582|gb|ACU46363.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238733875|gb|ACR55146.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|224045150|ref|XP_002197916.1| PREDICTED: similar to pol-like protein ENS-3 [Taeniopygia guttata]
Length = 834
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 11 AYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALKYPCK 68
+TDG+C W + + + GE + ++ + + + K
Sbjct: 395 LFTDGSCRIVGMKRKWKAAVWSPTRQVAEATEGESGSSQLAELKAVQLALDIAEREKWPK 454
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ LYTDS V W+++W++ W+ K + D W + V + + H
Sbjct: 455 LYLYTDSWMVANALWGWLERWKKANWQRR-GKPIWAADEWKDIATRVEKLSVKVRHVDAH 513
Query: 129 AG-------NQENEKVDRIAR 142
+Q N++VD+ A+
Sbjct: 514 VPKSRANKEHQHNQQVDQAAK 534
>gi|212383162|gb|ACJ25876.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E T N+ + AI+ +V +
Sbjct: 595 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKAELQAIQLALQDSGL-EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKGESELVNQIIEQLINKERVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIGK 712
>gi|186940923|dbj|BAG31061.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLNDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|157004987|gb|ABV00697.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKIIPLNDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|156254397|gb|ABU62688.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKDKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|111119028|gb|ABH05948.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKAGKAGYITDRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|57869703|gb|AAW57739.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|263201032|gb|ACY70127.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGVEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256011628|gb|ACU55670.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDXGRQKVVXLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESXIVNQIIEQLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010931|gb|ACU55322.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSAGIRK 710
>gi|156254377|gb|ABU62678.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVVSMTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|37221319|gb|AAQ89790.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+EK++S E T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGREKVVSLTE---TTNQKTELHAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + + + + + KV L W+ H
Sbjct: 593 NIVTDSQYV-------------LGIIQAQPDKSDSELVNQIIEKLIKKDKVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGIRK 657
>gi|30720407|gb|AAP33675.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|18699255|gb|AAL78496.1|AF414006_8 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+ D++
Sbjct: 698 GGNEQADKLVSAGIR 712
>gi|25167071|gb|AAN73835.1|AF484522_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1438
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1031 YVDGAANRETKLGKAGYVTDKGRQKVVSMTDITNQKAELQAINLALQ-----DSGLEVNI 1085
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1086 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 1132
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1133 GGNEQVDKLVSNGIRKI 1149
>gi|86753563|gb|ABD14990.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|256011248|gb|ACU55480.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A+K +V +
Sbjct: 596 YVDGAANRDTKTGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALK-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010815|gb|ACU55264.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVPLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|255983986|gb|ACU46065.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|212383302|gb|ACJ25935.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 604 YVDGAANRETKAGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGPEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|212382726|gb|ACJ25673.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|196248555|ref|ZP_03147256.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
gi|196212280|gb|EDY07038.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
Length = 221
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 4/137 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V AY DG GG G ++ YK + A A
Sbjct: 73 DVVAYFDGGFDHETTQGGVGAVIYYKQNDHRYRLRANRQLGEIRSNNEAEYAAFWFVMQM 132
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
L V + Q +G ++ ++ + +
Sbjct: 133 LEELGVRHLPVTFRGDSHVVLKQLSGDWPCFEEDHNAWLDRIE--AKMRDLDIQPTYEP- 189
Query: 128 HAGNQENEKVDRIARNA 144
++N++ D +AR A
Sbjct: 190 -ISRKQNKEADSLARQA 205
>gi|194399919|gb|ACF60892.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIYLALQ-----DSGLEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 705 GGNEQVDKLVSAGIRKI 721
>gi|51572124|gb|AAU06771.1| pol protein [Human immunodeficiency virus 1]
gi|212383259|gb|ACJ25919.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKTGKAGYVTDRGRQKVVTLTETTNQKTELQAVQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682721|gb|AAQ98312.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIR 711
>gi|34811835|gb|AAO40778.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095425|gb|AAK12268.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|49574459|gb|AAT66895.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|13891896|gb|AAG50327.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRESRVGKAGYVTDRGRQKVISLNDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRKI 559
>gi|306478029|gb|ADM89389.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNKGRQKIIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|292658932|gb|ADE34326.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S E TTN + EL A L +V
Sbjct: 598 YVDGASNRETKQGKAGY---VTDKGRQKAVSLTE--TTNQKAELHAI--QLALQDSGSEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV K + + + + + KV L W+ H
Sbjct: 651 NIVTDSQYVLGIIQALPDKSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSAGIRKI 716
>gi|289187038|gb|ADC92099.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKAVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288558519|dbj|BAI68317.1| polyprotein [Human immunodeficiency virus 1]
Length = 329
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 193 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 245
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 246 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 292
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 293 GIGGNEQVDKLVSSGIR 309
>gi|263200948|gb|ACY70052.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGKQKIITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|255984406|gb|ACU46275.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|256252394|dbj|BAH97425.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|224986193|gb|ACN74770.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|238734297|gb|ACR55518.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDKGRQKVISLMDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|229473609|gb|ACQ73332.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETRAGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|138894873|ref|YP_001125326.1| hypothetical protein GTNG_1209 [Geobacillus thermodenitrificans
NG80-2]
gi|134266386|gb|ABO66581.1| Ribonuclease H [Geobacillus thermodenitrificans NG80-2]
Length = 191
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 4/137 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
+V AY DG GG G ++ YK + A A
Sbjct: 43 DVVAYFDGGFDHETTQGGVGAVIYYKQNDHRYRLRANRQLGEIRSNNEAEYAAFWFVMQM 102
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
L V + Q +G ++ ++ + +
Sbjct: 103 LEELGVRHLPVTFRGDSHVVLKQLSGDWPCFEEDHNAWLDRIE--AKMRDLDIQPTYEP- 159
Query: 128 HAGNQENEKVDRIARNA 144
++N++ D +AR A
Sbjct: 160 -ISRKQNKEADSLARQA 175
>gi|86371906|gb|ABC95015.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37683027|gb|AAQ98584.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|14091492|gb|AAK53765.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGVRK 558
>gi|13891844|gb|AAG50301.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891840|gb|AAG50299.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891842|gb|AAG50300.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|24987805|pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 440 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 494
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 495 IVDSQYVMGIVASQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 541
Query: 132 QENEKVDRIARNAA 145
N++VD +
Sbjct: 542 GGNQEVDHLVSQGI 555
>gi|325637225|gb|ADZ34816.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416212|gb|ADM86953.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289187380|gb|ADC92268.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|224986363|gb|ACN74923.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491831|gb|AAR22205.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TINQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|13095358|gb|AAK12242.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+ S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---ITDKGRQKVASITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|17902138|gb|AAL47803.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKVITLTETTNQKAELQAIQIALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|16751260|gb|AAL05335.1| pol protein [Human immunodeficiency virus 1]
Length = 979
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G +KI+S E ++ + +V +
Sbjct: 572 YVDGAANRET-KMGKAGYVTDRGGQKIVSLTETTNQKAELQAIQL----ALQDSGSEVNI 626
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 627 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 673
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 674 GGNEQIDKLVSKGIRK 689
>gi|14091546|gb|AAK53792.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14091520|gb|AAK53779.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416278|gb|ADM86986.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289469774|gb|ADC96542.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289186970|gb|ADC92065.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186938|gb|ADC92049.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186926|gb|ADC92043.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186918|gb|ADC92040.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187565|gb|ADC42276.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256252280|dbj|BAH97533.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|224986153|gb|ACN74734.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|222428231|gb|ACM49915.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAHPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|170778915|gb|ACB36857.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRKI 559
>gi|126567749|gb|ABO21049.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDNSESEVVNQIIEELVKKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|51572095|gb|AAU06745.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E T N+ + AI+ +V +
Sbjct: 596 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKAELQAIQLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKGESELVNQIIEQLINKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIGK 713
>gi|42592282|emb|CAF29002.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 566
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 422 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 476
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 477 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEELIKKEKVYLSWVPAHKGI 523
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 524 GGNEQVDKLVSAGIRK 539
>gi|37496491|emb|CAD48448.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1499
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1092 YVDGAANRETKLGKAGY---VTDRGRQKVVSITE---TTNQKTELHAIHLALQDSG-SEV 1144
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1145 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 1191
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1192 GIGGNEQVDKLVSSGIRK 1209
>gi|37221314|gb|AAQ89788.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNERVDKLVSSGIRK 657
>gi|49574424|gb|AAT66878.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|49574439|gb|AAT66885.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|13569219|gb|AAK30964.1|AF286224_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYITDRGRQKIVTLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|8886633|gb|AAF80532.1|AF179368_2 pol [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I T N+ + AI +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVIT----PIETTNQKTELEAIHLALKDSGL-EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|74623|pir||GNVWLV HIV-1 retropepsin (EC 3.4.23.16) - human immunodeficiency virus
type 1 (isolate LAV-1a)
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416342|gb|ADM87018.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R A T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLAETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289186994|gb|ADC92077.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELEAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288558563|dbj|BAI68338.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|256011376|gb|ACU55544.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKXKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|255984752|gb|ACU46448.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAILLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRKI 159
>gi|242825218|ref|XP_002488395.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712213|gb|EED11639.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 669
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GH ENE D A+ A S
Sbjct: 473 WPLRKRLPHTKSGSIQIRWVPGHVKIPENEAADLAAKEGAASI 515
>gi|134140562|gb|ABO61036.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + N G G+ + + + + TTN + EL A + AL ++
Sbjct: 602 YVDGAANRNSKLGRAGY-----VTDRGQERAINLENTTNQQAELQAILLALMDGPP--EM 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L TDS Y G T+ + ++ + + +++ + + + H
Sbjct: 655 NLVTDSQYA-------------LGIITAAPEVSESPLVEQIIQQMLSKNAIFISRVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD +
Sbjct: 702 GIGGNEEVDHLVSRGIRQ 719
>gi|108860339|dbj|BAE95867.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221483|gb|AAQ89870.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAKPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221479|gb|AAQ89868.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAKPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|17046523|gb|AAL34563.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 593 YVDGASNRETKLGKAGY---VTDRGRQKVVSLNETTNQKTELQAIQL----ALQDSGTEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRKI 711
>gi|4324871|gb|AAD17135.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 1122 GGNEQIDKLVSKGIRK 1137
>gi|29470219|gb|AAO74590.1| pol protein [synthetic construct]
Length = 727
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLIE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|885629|gb|AAC55694.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ K + +TTN R EL A AL +V
Sbjct: 441 YVDGAANRETKLGRAGY-----VTNKGRQKVVTLTDTTNQRTELQAIHLALQDSG--SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRKI 559
>gi|288188530|gb|ADC42738.1| pol protein [Human immunodeficiency virus 1]
Length = 532
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 413 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 467
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 468 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 514
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 515 GGNEQVDKLVSAGIRK 530
>gi|256011496|gb|ACU55604.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALE-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010783|gb|ACU55248.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIHAKPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIRK 719
>gi|255984472|gb|ACU46308.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRKI 159
>gi|226348546|gb|ACO50592.1| pol protein [Human immunodeficiency virus 1]
Length = 399
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ ++ + + A++ +V +
Sbjct: 85 YVDGAANRETKSGKAGYVINKGRQKVVSLTDTTNQKIELQAIYLALQ-----DSGLEVNI 139
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 140 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 186
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 187 GGNEQVDKLVSAGIRK 202
>gi|222428404|gb|ACM50053.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSTGIRK 718
>gi|114431166|dbj|BAF31415.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRENKKGRAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63014521|gb|AAY25687.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|63014498|gb|AAY25667.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTKTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37682589|gb|AAQ98270.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI+ +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKAELQAIQLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 693 GIGGNEQVDKLVSNGIRK 710
>gi|36365480|gb|AAQ86691.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|36365534|gb|AAQ86739.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|36365525|gb|AAQ86731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|49574377|gb|AAT66858.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIGQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|25166771|gb|AAN73565.1|AF484492_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANKDTKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|87116071|gb|ABD19605.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 966
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|328834460|gb|AEB52867.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288558553|dbj|BAI68333.1| polyprotein [Human immunodeficiency virus 1]
Length = 317
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 190 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 229
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 230 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKDKVYLSWVPAHK 289
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 290 GIGGNEQVDKLVSSGIRK 307
>gi|288558511|dbj|BAI68313.1| polyprotein [Human immunodeficiency virus 1]
Length = 329
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + K+ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGKAGYVTDRGRKKVVSLTXTTNQKTELHAIHLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + V L W+ H G
Sbjct: 247 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKENVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIRK 309
>gi|288188546|gb|ADC42746.1| pol protein [Human immunodeficiency virus 1]
Length = 459
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 340 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 394
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 395 VTDSQYALGIIQAQPDKSK-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 441
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 442 GGNEQVDKLVSAGIRK 457
>gi|256252290|dbj|BAH97542.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|209156876|gb|ACI39929.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E TTN + EL A +L +V
Sbjct: 600 YVDGASNRETKTGKAGY---VTDRGRQKAVSLTE--TTNQKAELHAI--SLALQDSGSEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRKI 718
>gi|112497902|gb|ABI20303.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKXGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|112497782|gb|ABI20195.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIXQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63014422|gb|AAY25600.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTDRGRQKVVSLSETTNQKTELHAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|67553092|gb|AAY68679.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 604 YVDGAANRETKAGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGPEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|63098363|gb|AAY32408.1| pol protein [Human immunodeficiency virus 1]
gi|212383279|gb|ACJ25927.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDKGRQKIITLSETTNQKTELEAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L WI H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWIPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37682938|gb|AAQ98504.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K +S E T N+ + AI +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKTVSLTE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|22596545|gb|AAN03302.1|AF457087_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S ETTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LAETTNQRTELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|61102586|gb|AAX37725.1| pol protein [Human immunodeficiency virus 1]
Length = 431
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI +V +
Sbjct: 20 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELQAIHLALQDSG-SEVNI 74
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 75 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 122 GGNEQVDKLVSSGIRK 137
>gi|306416218|gb|ADM86956.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|295314174|gb|ADF97424.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRDTKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIWLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIR 716
>gi|288558573|dbj|BAI68343.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 292 GIGGNEKVDKLVSSGIRK 309
>gi|255984438|gb|ACU46291.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 94 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|242810717|ref|XP_002485639.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716264|gb|EED15686.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 163
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GHA ENE D A+ A S
Sbjct: 88 WPLRKRLPHTKSGSIQIRWVPGHAKIPENEAADLAAKEGAASI 130
>gi|242814720|ref|XP_002486425.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714764|gb|EED14187.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 285
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GHA ENE D A+ A S
Sbjct: 89 WPLRKRLPHTKSGSIQIRWVPGHAKIPENEAADLAAKEGAASI 131
>gi|242826635|ref|XP_002488682.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712500|gb|EED11926.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GHA ENE D A+ A S
Sbjct: 62 WPLRKRLPHTKSGSIQIRWVPGHAKIPENEAADLAAKEGAASI 104
>gi|157005005|gb|ABV00713.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKIISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13095365|gb|AAK12245.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|13095363|gb|AAK12244.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|49574383|gb|AAT66861.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|87116053|gb|ABD19589.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRDRKIGKAGYVTDRGRQKIISLNETTNQKTELQAIQLALQ-----DSGPEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|327458257|gb|AEA76568.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++G + T + +A +V
Sbjct: 441 YVDGASNRETKLGKAGY-VTDRGRQKVXSLTGTTNQKTELQAIHLAL------QDSGXEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|327458199|gb|AEA76539.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458195|gb|AEA76537.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTDTTNQRTELQAIYLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|319429327|gb|ADV56940.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 540 YVDGAANRETKQGKAGY---VTDRGRQKIVSLTETTNQKTELQAIYL----ALQDSGSEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + +V L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESEJVNQIIEELIXKERVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGIRK 657
>gi|306477817|gb|ADM89283.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 541 GIGGNEQADKLVSTGIRK 558
>gi|302594706|gb|ADL59541.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|229661984|gb|ACQ84431.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428569|gb|ACM50185.1| pol protein [Human immunodeficiency virus 1]
Length = 1017
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 610 YVDGAANKDTKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 665 VTDSQYALGIIQAQPDQSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 712 GGNEQVDKLVSSGIRK 727
>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++WI H G + NE+ DR A+ A
Sbjct: 54 QVSIHWIPTHQGIEGNERADRAAKEA 79
>gi|112497882|gb|ABI20285.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|67553102|gb|AAY68688.1| pol protein [Human immunodeficiency virus 1]
gi|212383341|gb|ACJ25949.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGTIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|36365516|gb|AAQ86723.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|36365507|gb|AAQ86715.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|896061|gb|AAA93165.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 566
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|896049|gb|AAA93162.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 566
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458303|gb|AEA76591.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+ S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVXSITDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYAJGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|289187362|gb|ADC92259.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288558539|dbj|BAI68326.1| polyprotein [Human immunodeficiency virus 1]
Length = 325
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 292 GIGGNEKVDKLVSSGIRK 309
>gi|260533764|gb|ACX45160.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KIIS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKIISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDQSESELVNKIIEKLIEKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|256011626|gb|ACU55669.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 601 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGXEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|256011048|gb|ACU55380.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIXXXXKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|255984932|gb|ACU46538.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRKI 159
>gi|238734074|gb|ACR55322.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIIKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|212674617|gb|ACJ37044.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITIQETTNQKTELHAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 697 GGNEKVDKLVSSGIRK 712
>gi|156144946|gb|ABU53017.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KIIS E TTN R EL A AL + +V
Sbjct: 604 YVDGAANRETKLGKAGY---VTDRGRQKIISLTE--TTNQRAELQAIYLALQDSEV--EV 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G S ++ + + + K+ L W+ H
Sbjct: 657 NIVTDSQYA-------------LGIIQSQPDISESDIVNQIIEQLVKKEKIYLSWVPAHK 703
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 704 GIGGNEQIDKLVSAGIRK 721
>gi|156042792|ref|XP_001587953.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980]
gi|154695580|gb|EDN95318.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 396
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 171 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 218
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 219 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 278
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 279 GAEISLNWVPGHTSVQGNELADSLAKEA 306
>gi|37682550|gb|AAQ98235.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVVSITETTNQKTELQAIQL----ALQDSGSEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 650 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIRK 714
>gi|37221310|gb|AAQ89786.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|14091498|gb|AAK53768.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELVKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|13095353|gb|AAK12240.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---ITDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|4324855|gb|AAD17119.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1428
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 1122 GGNEQIDKLVSKGIRK 1137
>gi|3980307|emb|CAA09796.1| pol protein [Human immunodeficiency virus 1]
Length = 674
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 496 YVDGAANRETRIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 550
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 551 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 597
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 598 GGNEQVDKLVSAGIRK 613
>gi|14091534|gb|AAK53786.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELVKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|25166931|gb|AAN73709.1|AF484508_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1436
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 1029 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELHAIYLALQDSG--SEV 1081
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 1082 NVVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 1128
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 1129 GIGGNEQVDKLVSSGIRKI 1147
>gi|86753633|gb|ABD15053.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVITINETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|327458375|gb|AEA76627.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|326370793|gb|ADZ56556.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325635609|gb|ADZ33444.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
+ NE+VD++ +
Sbjct: 698 EGNEQVDKLVSSGIR 712
>gi|306416326|gb|ADM87010.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQTQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GMGGNEQVDKLVSSGIRK 558
>gi|302594730|gb|ADL59553.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLSE---TTNQQTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAHPDRSE-------------SQIVNQIIEELIGKDKVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIR 117
>gi|256011662|gb|ACU55687.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|255984746|gb|ACU46445.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 41 YVDGAASRETKJGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984514|gb|ACU46329.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ I + A++ +V +
Sbjct: 41 YVDGAAXRETKXGKAGYVTNRGRQKXIPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLTWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984434|gb|ACU46289.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXIALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984190|gb|ACU46167.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQXTELZAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|238635995|gb|ACR53176.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + + G G + + + + A++
Sbjct: 580 LEKEPVPGVETFYVDGAANRDTKIGKAGYVTDKGRQRVVSLTETTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGLEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQVIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIR 708
>gi|157274013|gb|ABV28284.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKMEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|156041116|ref|XP_001587544.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980]
gi|154695920|gb|EDN95658.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 171 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 218
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 219 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 278
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 279 GAEISLNWVPGHTSVQGNELADSLAKEA 306
>gi|148745893|emb|CAK49335.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSXGIRK 713
>gi|119507248|dbj|BAF42488.1| Pol [Human immunodeficiency virus 1]
gi|119507258|dbj|BAF42497.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSKSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|114431176|dbj|BAF31424.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRENKKGRAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|59003599|gb|AAW83601.1| pol protein [Human immunodeficiency virus 1]
gi|212383150|gb|ACJ25871.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKVIPLNETTNQKAELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|49887120|gb|AAT68803.1| pol protein [Simian immunodeficiency virus]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + GK+ + S + TTN + EL A + AL +
Sbjct: 601 YVDGAANRES-KMGKAGYISEWGKQGVKS--LENTTNQKAELEAILLALEEGPSKMNI-- 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + +V L W+ H G
Sbjct: 656 VTDSQYALGILLEHPTETEHEIVEK-------------IIQALQEKEQVYLNWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVSF 148
N++VD++
Sbjct: 703 GGNDQVDKLVSRGIRRI 719
>gi|83722754|gb|ABC41651.1| pol protein [Feline immunodeficiency virus]
Length = 1135
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL + ++
Sbjct: 605 YIDGGRKKGQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 658
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 659 --TDSQYVYNMI--------------RARPEPSDPLWKEIIEELQKKEKIFLDWVPGHKG 702
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 703 IPGNKEIDEL 712
>gi|49574441|gb|AAT66886.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|49574420|gb|AAT66876.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|49574422|gb|AAT66877.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|885621|gb|AAC55690.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|82571270|gb|ABB84041.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVHAYT-DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V + DGA + G + KG++KI+S E ++ +
Sbjct: 581 LEQEPIAGVETFCVDGAANRET-KMGKAGYVTDKGRQKIVSLTETTNQKAELQAIQL--- 636
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 637 -ALQDSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKER 682
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++
Sbjct: 683 IYLSWVPAHKGIGGNEQVDKLVSKGIRK 710
>gi|327458183|gb|AEA76531.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLXETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIGKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478093|gb|ADM89421.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTDKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|306416366|gb|ADM87030.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416482|gb|ADM87088.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + K+ L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|255984732|gb|ACU46438.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELEAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|238635947|gb|ACR53133.1| pol protein [Human immunodeficiency virus 1]
gi|238635966|gb|ACR53150.1| pol protein [Human immunodeficiency virus 1]
gi|238636003|gb|ACR53183.1| pol protein [Human immunodeficiency virus 1]
gi|238636013|gb|ACR53192.1| pol protein [Human immunodeficiency virus 1]
gi|238636023|gb|ACR53201.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + + G G + + + + A++
Sbjct: 580 LEKEPVPGVETFYVDGAANRDTKIGKAGYVTDKGRQRVVSLTETTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGLEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQVIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIR 708
>gi|212382943|gb|ACJ25771.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVHAYT-DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V + DGA + G + KG++KI+S E ++ +
Sbjct: 581 LEQEPIAGVETFCVDGAANRET-KMGKAGYVTDKGRQKIVSLTETTNQKAELQAIQL--- 636
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 637 -ALQDSGSEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKER 682
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++
Sbjct: 683 IYLSWVPAHKGIGGNEQVDKLVSKGIRK 710
>gi|112497922|gb|ABI20321.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDXGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSAVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|112497852|gb|ABI20258.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|115502561|sp|Q73368|POL_HV1B9 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRK 1145
>gi|37221358|gb|AAQ89808.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+ZK++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTNRGRZKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPBKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|84043937|gb|AAQ76632.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKMGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSELELVNQIIEQLIKKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|18844727|dbj|BAB85450.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVCLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|327458315|gb|AEA76597.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKJGKAGY---VTDRGKQKVVSLXDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSXGIRK 558
>gi|325634535|gb|ADZ32523.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|306416276|gb|ADM86985.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIVQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594696|gb|ADL59536.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKAVSITE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|224979349|gb|ACN72598.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 596 YVDGASNRESKRGKAGYVTDRGRQK---AVSLTETTNQKAELHAIQLALQDSGP--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIEKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011478|gb|ACU55595.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++G + T + +A +V
Sbjct: 596 YVDGASNRETKLGKAGY-VTDRGRQKVVSLTGTTNQKTELQAIHLAL------QDSGXEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256252240|dbj|BAH97497.1| Pol [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDRGRQKAIPLTDTTNQKTELQAINLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSKGIRK 718
>gi|238635986|gb|ACR53168.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + + G G + + + + A++
Sbjct: 580 LEKEPVPGVETFYVDGAANRDTKIGKAGYVTDKGRQRVVSLTETTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGLEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQVIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIR 708
>gi|238635976|gb|ACR53159.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + + G G + + + + A++
Sbjct: 580 LEKEPVPGVETFYVDGAANRDTKIGKAGYVTDKGRQRVVSLTETTNQKAELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGLEVNIVTDSQYA-------------LGIIQAQPDKSESELVNQVIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIR 708
>gi|212382987|gb|ACJ25792.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIR 708
>gi|37728012|gb|AAR02377.1| pol protein [Simian immunodeficiency virus]
Length = 1017
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + ++ + ++TTN + EL A + AL ++
Sbjct: 603 YVDGAANRTSKEGKAGYVTNFGARK---AVTLEQTTNQKAELEAVLLALRDGPPQMNII- 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + ++ + E + +V L W+ H G
Sbjct: 659 -TDSQYVLGIL-------------ASCPEISESPIVEAIIQELLKKDQVFLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 705 GGNEEVDRLVGQGIRQ 720
>gi|25166871|gb|AAN73655.1|AF484502_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELINQIIEQLINKEKIYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 25/134 (18%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y+D + + G ++ + +S + + + I
Sbjct: 1323 IYSDASAQKD--KIGAAAVILDRQGNVEVSRKRDKRNRPKTKRTVTIL------------ 1368
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+DS + + + + + + + L WI H
Sbjct: 1369 --SDSKSGLQTLT---------NQRNGSGQHIVRAIAKSARDLKAHGVSIRLQWIPSHCN 1417
Query: 131 NQENEKVDRIARNA 144
N N+ DR+A+ A
Sbjct: 1418 NPGNDTADRLAKEA 1431
>gi|325635504|gb|ADZ33353.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478219|gb|ADM89484.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTDKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRKI 559
>gi|306477539|gb|ADM89144.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416298|gb|ADM86996.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416236|gb|ADM86965.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416214|gb|ADM86954.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256010687|gb|ACU55200.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXREXKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984348|gb|ACU46246.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRKI 159
>gi|212382760|gb|ACJ25689.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIVTLSDTTNQKTELQAIQIALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|194399899|gb|ACF60874.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVNTGIR 711
>gi|170778889|gb|ACB36844.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + +++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESVLVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|148745871|emb|CAK49324.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSQVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEKLIEKDKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|145605938|ref|XP_001406561.1| hypothetical protein MGG_02300 [Magnaporthe oryzae 70-15]
gi|145013680|gb|EDJ98321.1| hypothetical protein MGG_02300 [Magnaporthe oryzae 70-15]
Length = 977
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 755 EVRVRWCPGHQGIPGNDRADELAKAG 780
>gi|112351439|gb|ABI15232.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRKKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSDGIR 712
>gi|108860436|dbj|BAE95954.1| Pol [Human immunodeficiency virus 1]
Length = 1004
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELKAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + K ++ KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSESQLVNQIIGKLIEKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIRK 714
>gi|37221390|gb|AAQ89824.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221526|gb|AAQ89891.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A I AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTDTTNQKTELQAIILALQDSGL--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|4324823|gb|AAD17087.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1425
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +E + + A++ +V +
Sbjct: 1018 YVDGAANRETKIGKAGYVTDKGRQEVVTLTETTNQKAELQAIQLALQ-----DSGPEVNI 1072
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1073 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1119
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 1120 GGNEKVDKLVSSGIRE 1135
>gi|13095386|gb|AAK12251.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S + T N+ + I +V +
Sbjct: 443 YVDGAANR-GTKLGKAGYVTDKGRQKVVSITD---TTNQKTELQVIHLALQDSGL-EVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|83722756|gb|ABC41652.1| pol protein [Feline immunodeficiency virus]
Length = 1135
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL + ++
Sbjct: 605 YIDGGRKKGQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 658
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 659 --TDSQYVYNMI--------------RARPEPSDPLWKEIIEELQKKEKIFLDWVPGHKG 702
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 703 IPGNKEIDEL 712
>gi|49574435|gb|AAT66883.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|3378123|gb|AAC28446.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIEKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328834093|gb|AEB52541.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984904|gb|ACU46524.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984504|gb|ACU46324.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGXAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|255984140|gb|ACU46142.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|256252250|dbj|BAH97506.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKAIPLTDTTNQKTELQAINLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSKGIRK 712
>gi|112497862|gb|ABI20267.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|67553072|gb|AAY68661.1| pol protein [Human immunodeficiency virus 1]
gi|212383326|gb|ACJ25943.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + KG++K+++ E T N+ + AI+ +V +
Sbjct: 592 YVDGAANRDT-KMGKAGYVTDKGRQKVVTLTE---TTNQKAELQAIQLALQDSGL-EVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|55275187|gb|AAV49406.1| pol protein [Human immunodeficiency virus 1]
gi|55275237|gb|AAV49451.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSITAPTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHTGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|37725216|gb|AAR02282.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGXAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|36365489|gb|AAQ86699.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|33331476|gb|AAQ10920.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAINL----ALQDSGPEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSKSELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|12407063|emb|CAC24829.1| pol [Human immunodeficiency virus 1]
Length = 225
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 112 YVDGAANRETKKGKAGYVTDKGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNI 166
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 167 VTDSQYA-------------LGIIQAQSDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 213
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 214 GGNEQVDKL 222
>gi|13095417|gb|AAK12264.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1845206|gb|AAB47781.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 876
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A AL KV +
Sbjct: 464 YTDGSCNRQSKEGKAGYVTDRGRDKV---RVLEQTTNQQAELEAFAMALADSGP--KVNI 518
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + + V + WI H G
Sbjct: 519 IVDSQYVMGIVASQPTESE-------------SRIVNQIIEDMIKKEAVYVAWIPAHKGI 565
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 566 GGNQEVDHLVSQGIRQ 581
>gi|31980427|dbj|BAC77747.1| Pol polyprotein [Human immunodeficiency virus 1]
gi|31980437|dbj|BAC77756.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVIP---LAETTNQKAELHAIHLALQDSG--SGVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637435|gb|ADZ34996.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635534|gb|ADZ33379.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477537|gb|ADM89143.1| pol protein [Human immunodeficiency virus 1]
gi|306477543|gb|ADM89146.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|295883807|gb|ADG57042.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYITDRGRQKVVPLIDTTNQKTELQAVYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYV-------------LGIIQAQPDKSESDIVNQIIEKLIQKERVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|289187313|gb|ADC92235.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGXAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187205|gb|ADC92182.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|256011152|gb|ACU55432.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGKQKIVTLTDTTNQKTELQAIHLALQ-----DSGSAVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010955|gb|ACU55334.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 599 YVDGAANR-GTKLGRAGYVTDRGRQKVVS--LPDTTNQKTELQAIHLALQDSGL--EVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|255984566|gb|ACU46355.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAANRXTKSGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|255984306|gb|ACU46225.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984222|gb|ACU46183.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|224986403|gb|ACN74959.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|224986283|gb|ACN74851.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|255081566|ref|XP_002508005.1| predicted protein [Micromonas sp. RCC299]
gi|226523281|gb|ACO69263.1| predicted protein [Micromonas sp. RCC299]
Length = 1349
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISG 41
Y DGA GNPGP G G L+R +I +G
Sbjct: 1100 TLYFDGASRGNPGPAGAGALIRRDADSRIGAG 1131
>gi|222428622|gb|ACM50227.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGKQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV + W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYMAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 696 GIGGNEKVDKLVSSGIRK 713
>gi|212382827|gb|ACJ25720.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 603 YVDGAASRETKMGKAGYVTDKGRQKIVHLAETTNQKTELQAIQLALQ-----DSGPEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLINKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 705 GGNEQIDKLVSSGIRK 720
>gi|156144936|gb|ABU53008.1| pol protein [Simian immunodeficiency virus]
Length = 1014
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ + V +
Sbjct: 603 YVDGAANRDTKKGKAGYVTDRGRQKIVNLEDTTNQKAELTAVYLALQDAEHI-----VNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + E + K L W+ H G
Sbjct: 658 VTDSQYVLGIIHSQPDQSE-------------SELVNLIIEELIKKEKSYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIR 719
>gi|157004996|gb|ABV00705.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|110815940|sp|Q77373|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ V +
Sbjct: 1027 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQ-----DSKETVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 1082 VTDSQYALGVISSQPTQSE-------------SPIVQQIIEELTKKEQVYLTWVPAHKGI 1128
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 1129 GGNEKIDKL 1137
>gi|37221286|gb|AAQ89774.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNERVDKLVSAGIRK 657
>gi|37221494|gb|AAQ89875.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221282|gb|AAQ89772.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNERVDKLVSAGIRK 657
>gi|37221492|gb|AAQ89874.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|17046563|gb|AAL34599.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S E T N+ + AI+ +V
Sbjct: 600 YVDGAANRETKTGKAGY---VTDKGRQKIVSLNE---TTNQKAELQAIQLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 700 GIGGNEQVDKLVSSGIRK 717
>gi|45360157|gb|AAS59194.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E ++ + +V
Sbjct: 540 YVDGASNRETKQGKAGY---VTDRGRQKAVSLTETTNQKAELQAIQL----ALQDSGSEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TD+ Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDTQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRKI 658
>gi|15895813|ref|NP_349162.1| RNAse H family protein [Clostridium acetobutylicum ATCC 824]
gi|15025574|gb|AAK80502.1|AE007753_11 RNAse H family protein [Clostridium acetobutylicum ATCC 824]
gi|325509965|gb|ADZ21601.1| RNAse H family protein [Clostridium acetobutylicum EA 2018]
Length = 240
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG------GEKETTNNRMELMAAIKALT 61
E A+ DG+ G GV++ + E + ++ +E
Sbjct: 104 EFIAFVDGSYDKLKKLYGSGVIVLGENDEFKVYSTAGRDTWDQWNIVGELEATKLALTKA 163
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
V +Y D + + K + S + +
Sbjct: 164 KEFGTKNVAIYHDLKNIALWATGEW-----------KAKNEFTQGYVKFIEDISKELNIY 212
Query: 122 LYWIKGHAG-NQENEKVDRIARNAAVSF 148
+KGH+ ++ N+ D A+ A V +
Sbjct: 213 FVKVKGHSYESKYNDLADEAAKKAIVEY 240
>gi|325637480|gb|ADZ35034.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637237|gb|ADZ34826.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635519|gb|ADZ33366.1| pol protein [Human immunodeficiency virus 1]
gi|325635542|gb|ADZ33386.1| pol protein [Human immunodeficiency virus 1]
gi|325635557|gb|ADZ33399.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477545|gb|ADM89147.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477541|gb|ADM89145.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477533|gb|ADM89141.1| pol protein [Human immunodeficiency virus 1]
gi|306477535|gb|ADM89142.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416338|gb|ADM87016.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIVQAQPDRSE-------------SEVVSQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|259122612|gb|ACV92584.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVITLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288187567|gb|ADC42277.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011678|gb|ACU55695.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 608 YVDGAANRETKAGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 663 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRK 725
>gi|256011340|gb|ACU55526.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011222|gb|ACU55467.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|256011052|gb|ACU55382.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGASNKETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEELIMKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|224050411|ref|XP_002191297.1| PREDICTED: similar to KIAA1466 protein [Taeniopygia guttata]
Length = 533
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 8 EVHAYTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +TDG+ G G+ V + + T+ + + A+ L
Sbjct: 42 DWELFTDGSSFMEDGIRHAGYAV---TTISPVVEAKALPPNTSAQKAELVALTRALELSE 98
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSD-KKTVKNIDLWMKFVEASAQHKVDLYW 124
K ++TDS Y W++ S + + +
Sbjct: 99 GKKANIWTDSKYAFGVVHVHGALWKERDLFLSQGTHIKHQDAVLQLTGAVQKPEQGAITH 158
Query: 125 IKGH-AGN----QENEKVDRIARNAAVSFK 149
K H +GN + N K D AR AA +
Sbjct: 159 CKAHQSGNSKICEGNRKADWTARQAARKVQ 188
>gi|213495586|gb|ACJ49053.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIRLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|121645194|gb|ABM63553.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + T ++ + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDTSESEIVNLIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++ N
Sbjct: 696 GIGGNEQADKLVSNGVRK 713
>gi|22532132|gb|AAM97844.1|AF460972_2 pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 658 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 705 GGNEQVDKLVSNGIRK 720
>gi|55735959|gb|AAV59691.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKTGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIILAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|11385873|gb|AAG35000.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 395 YVDGAANRDTKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGIRK 512
>gi|325635343|gb|ADZ33216.1| pol protein [Human immunodeficiency virus 1]
gi|325635359|gb|ADZ33230.1| pol protein [Human immunodeficiency virus 1]
gi|325635391|gb|ADZ33258.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|222428573|gb|ACM50188.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKIISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428514|gb|ACM50141.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 698 GGNEKVDKLVSSGIRK 713
>gi|156055132|ref|XP_001593490.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980]
gi|154702702|gb|EDO02441.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1581
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 1415 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 1467
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 1468 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 1515
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 1516 AEAIQNKGAEISLNWVPGHTFVQGNELADSLAKEA 1550
>gi|86371848|gb|ABC94963.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491909|gb|AAR22275.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 594 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELHAIYLALQDSG--SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESESVNLIIEKLIEKE-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|36365498|gb|AAQ86707.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|36365471|gb|AAQ86683.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|25166781|gb|AAN73574.1|AF484493_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN R EL A AL +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQRTELHAIYLALQDSG--SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VDR+ +
Sbjct: 1126 GIGGNEQVDRLVSSGIRK 1143
>gi|11320997|gb|AAG33991.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+IS E ++ + +V +
Sbjct: 593 YVDGAANRET-KAGKAGYVTDRGRQKVISLTETTNQKTELQAIQL----ALQDSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRE 710
>gi|73913913|gb|AAZ91882.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVITITETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIR 708
>gi|326385|gb|AAA44198.1| pol polyprotein [Human immunodeficiency virus 1]
gi|224366|prf||1102247C protein pol
Length = 1015
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 608 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 663 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|325635471|gb|ADZ33326.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306416428|gb|ADM87061.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|283444825|gb|ADB20300.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVITLSETTNQKTELQAVQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|256011732|gb|ACU55722.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGKQKIVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLIKKE-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984316|gb|ACU46230.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + ++ + +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTDTTNQRTELQAINL----ALQDSGLEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|224168593|ref|XP_002198941.1| PREDICTED: similar to gag-pro-pol polyprotein [Taeniopygia guttata]
Length = 813
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 9/143 (6%)
Query: 12 YTDGACSGNPGP--GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G G+ V+ G SG + + + A+ K
Sbjct: 475 FVDGSARVIDGKRKSGYAVIDGRTGTVIE-SGPLSAGWSAQACELYAVYRALLGLEGKKE 533
Query: 70 LLYTDSSYVH-KGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
++TDS Y + ++ T K + + + + +K H
Sbjct: 534 TIFTDSKYAFGVVHTFGKIWEERGLLNTRGKGLIHEELIKQILKAIRGPEAIAIVHVKRH 593
Query: 129 AG-----NQENEKVDRIARNAAV 146
+ N D+ A++AA+
Sbjct: 594 QTGMQFRARGNNLADKEAKSAAL 616
>gi|212382639|gb|ACJ25637.1| pol protein [Human immunodeficiency virus 1]
Length = 760
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|134284799|gb|ABO69489.1| pol [Feline immunodeficiency virus]
Length = 1153
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL + ++
Sbjct: 615 YIDGGRKKGQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 668
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 669 --TDSQYVYNMI--------------RARPEPSDPLWKEIIEELQKKEKIFLDWVPGHKG 712
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 713 IPGNKEIDEL 722
>gi|156050917|ref|XP_001591420.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980]
gi|154692446|gb|EDN92184.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1660
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 1344 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 1391
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 1392 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 1451
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 1452 GAEISLNWVPGHTSVQGNELADSLAKEA 1479
>gi|145603683|ref|XP_369570.2| hypothetical protein MGG_13281 [Magnaporthe oryzae 70-15]
gi|145011860|gb|EDJ96516.1| hypothetical protein MGG_13281 [Magnaporthe oryzae 70-15]
Length = 1101
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
V++++ + + W GH G N++ D +A+
Sbjct: 869 WICVDSTSVPRFGVRWCPGHQGIPGNDRADELAKAG 904
>gi|37934320|gb|AAO84275.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 578
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|37682500|gb|AAQ98190.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S E ++ + +V
Sbjct: 591 YVDGAANRETKLGKAGY---VTDKGRQKIVSLTETTNQKAELQAIQL----ALQDSGSEV 643
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 644 NVVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 691 GIGGNEQVDKLVSSGIRK 708
>gi|37221199|gb|AAQ89731.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLXDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEZLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221394|gb|AAQ89826.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|116202849|ref|XP_001227236.1| hypothetical protein CHGG_09309 [Chaetomium globosum CBS 148.51]
gi|88177827|gb|EAQ85295.1| hypothetical protein CHGG_09309 [Chaetomium globosum CBS 148.51]
Length = 755
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 30/163 (18%)
Query: 2 DSKHLR-----------EVHAYTDGACSGNPG---PGGWGV-----------LLRYKGKE 36
+H+R V TDGAC N GW ++ +
Sbjct: 565 RRQHMRVIRYTHRDDASTVLIRTDGACLENGQANPKAGWAFWHGVNDEGTQLVVSASLEA 624
Query: 37 KIISGGEKETTNNRMELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQN 92
+ G T+NR EL A I AL + + TDS YV +G ++W++ W +N
Sbjct: 625 RGPFGAAAAQTSNRAELRAVIAALRFRHWPGEGFDTFVAATDSEYVVEGATKWVRTWIRN 684
Query: 93 GWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI-KGHAGNQEN 134
GWKTS + VKN DLW + + D I + N
Sbjct: 685 GWKTSAGRDVKNKDLWEALLGEVERFSDDGMAIQFWRIPREWN 727
>gi|288188540|gb|ADC42743.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011578|gb|ACU55645.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHXALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256010964|gb|ACU55338.1| pol protein [Human immunodeficiency virus 1]
Length = 967
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 560 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 615 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 661
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 662 GGNEQVDKLVSAGIRKI 678
>gi|255984776|gb|ACU46460.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGTEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|134284785|gb|ABO69477.1| pol [Feline immunodeficiency virus]
Length = 1153
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL + ++
Sbjct: 615 YIDGGRKKGQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 668
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 669 --TDSQYVYNMI--------------RARPEPSDPLWKEIIEELQKKEKIFLDWVPGHKG 712
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 713 IPGNKEIDEL 722
>gi|134252647|gb|ABO64917.1| pol protein [Human immunodeficiency virus 1]
Length = 716
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 582 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 635 NIVTDSQYALGIIQAHPDRSESELVNQILEKLIEKD-------------KVYLSWVPAHK 681
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 682 GIGGNEQVDKLVSSGIRK 699
>gi|37935980|gb|AAO47217.1| pol protein [Human immunodeficiency virus 1]
Length = 1027
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ KV +
Sbjct: 610 YVDGAANRETKLGKAGYVTELGKQKIIKLDETTNQKAELMAILLALQ-----DSKEKVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S + + + + E + + +V L W+ H G
Sbjct: 665 VTDSQYALGIISSQPTQSE-------------SPIVQQIIEELTRKEQVYLAWVPAHKGI 711
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 712 GGNEKIDKL 720
>gi|37221296|gb|AAQ89779.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221298|gb|AAQ89780.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221294|gb|AAQ89778.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221364|gb|AAQ89811.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221360|gb|AAQ89809.1| pol protein [Human immunodeficiency virus 1]
gi|37221362|gb|AAQ89810.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|36365543|gb|AAQ86747.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL+A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELLAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|13095145|gb|AAK12155.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + V+ + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIVQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|25166851|gb|AAN73637.1|AF484500_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|328834424|gb|AEB52835.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELYAIQLALQ-----DSGSQVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAHPDRSESEMVNQIIEKLIEK-------------NKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|327458377|gb|AEA76628.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|327458317|gb|AEA76598.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + + + +V
Sbjct: 441 YVDGAANRETXJGKAGY---VTDRGKQKVVSLXDTXNQKXEXQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSXSXLVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|325635909|gb|ADZ33703.1| pol protein [Human immunodeficiency virus 1]
gi|325636017|gb|ADZ33797.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGKQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKKRVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRK 717
>gi|325635848|gb|ADZ33650.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGKQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKKRVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRK 717
>gi|325635093|gb|ADZ33007.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|299013548|gb|ADJ00333.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 597 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 636
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 637 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|288188478|gb|ADC42713.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ + G G + ++ + + A++ +V +
Sbjct: 540 YVDGSANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187868|gb|ADC42421.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ + G G + ++ + + A++ +V +
Sbjct: 540 YVDGSANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187629|gb|ADC42307.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSAGIRK 657
>gi|226933740|gb|ACO91928.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 590 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 645 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 692 GGNEQVDKLVSSGIRK 707
>gi|222428424|gb|ACM50069.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|242779688|ref|XP_002479439.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
gi|218719586|gb|EED19005.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
Length = 153
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++WI H G + NE+ D A+ A
Sbjct: 24 QVTIHWIPAHQGIEGNERADIAAKEA 49
>gi|242797147|ref|XP_002482953.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719541|gb|EED18961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1538
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++WI H G + NE+ D A+ A
Sbjct: 1331 QVTIHWIPAHQGIEGNERADIAAKEA 1356
>gi|156052491|ref|XP_001592172.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980]
gi|154704191|gb|EDO03930.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 798 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 845
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 846 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 905
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 906 GAEISLNWVPGHTSVQGNELADSLAKEA 933
>gi|145605230|ref|XP_365487.2| hypothetical protein MGG_13737 [Magnaporthe oryzae 70-15]
gi|145013071|gb|EDJ97712.1| hypothetical protein MGG_13737 [Magnaporthe oryzae 70-15]
Length = 986
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 695 EVRVRWCPGHQGIPGNDRADELAKAG 720
>gi|108860329|dbj|BAE95858.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|17046513|gb|AAL34554.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKMGKAGYVTDRGRQKVVPLTETTNQKTELQAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 649 VTDSQYA-------------LKIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|49574262|gb|AAT66802.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574296|gb|AAT66819.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574292|gb|AAT66817.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|60651927|gb|AAX33012.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ G T N+ + AI +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQK----GCHLTDTTNQKTELQAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|77416903|sp|P20876|POL_HV2ST RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1463
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A A+T +++
Sbjct: 1051 YTDGSCNKQSREGKAGYITDRGRDKV---RLLEQTTNQQAELEAFAMAVTDSGPKANIIV 1107
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1108 --DSQYVMGIVAGQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 1152
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1153 GGNQEVDHLVSQGIRQ 1168
>gi|327458321|gb|AEA76600.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|312601998|gb|ADQ92554.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 698 GGNEHVDKLVSAGIRK 713
>gi|312601996|gb|ADQ92553.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 698 GGNEHVDKLVSAGIRK 713
>gi|256011594|gb|ACU55653.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKTVSLTDTTNQKTELQAIHLALQ-----DSSSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + ++ KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIERLISKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256010739|gb|ACU55226.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 695 GGNEQVDRLVSTGIRK 710
>gi|255984956|gb|ACU46550.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984382|gb|ACU46263.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRKI 159
>gi|255984368|gb|ACU46256.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRESKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|222428524|gb|ACM50149.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|110815943|sp|Q9QBZ5|POL_HV1MP RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1430
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1023 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLALQ-----DSGSEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1078 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1125 GGNEQVDKLVSSGIRK 1140
>gi|156254405|gb|ABU62692.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIQLALQ-----DSETEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|119508069|dbj|BAF42461.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL V
Sbjct: 596 YVDGASNRETKLGRAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SAV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKD-------------RVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114152122|sp|Q1A249|POL_SIVEK RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1448
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K+ S E TTN + EL A + AL +V +
Sbjct: 1037 YVDGAANRETKLGKAGFV-TDRGRQKVTSISE--TTNQQAELQAVLMALQDAGQ--EVNI 1091
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G S ++ + E + ++ L W+ H G
Sbjct: 1092 VTDSQYV-------------LGIIHSQPDKSESELVNQIIEELIKKERIYLSWVPAHKGI 1138
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 1139 GGNEQIDKLVSTGIRK 1154
>gi|37221246|gb|AAQ89754.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALR-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|49574357|gb|AAT66848.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + Q KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNPIIEQLINQEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|5931483|dbj|BAA84661.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKSELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|327458197|gb|AEA76538.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTDTTNQRTELQAIYLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325637468|gb|ADZ35024.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|325637351|gb|ADZ34923.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637220|gb|ADZ34812.1| pol protein [Human immunodeficiency virus 1]
gi|325637242|gb|ADZ34830.1| pol protein [Human immunodeficiency virus 1]
gi|325637267|gb|ADZ34850.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635947|gb|ADZ33736.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGKQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKKRVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSAGIRK 717
>gi|325635069|gb|ADZ32988.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635027|gb|ADZ32952.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325634870|gb|ADZ32815.1| pol protein [Human immunodeficiency virus 1]
gi|325634934|gb|ADZ32871.1| pol protein [Human immunodeficiency virus 1]
gi|325635003|gb|ADZ32931.1| pol protein [Human immunodeficiency virus 1]
gi|325635051|gb|ADZ32973.1| pol protein [Human immunodeficiency virus 1]
gi|325635088|gb|ADZ33003.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|313661149|dbj|BAJ41170.1| Pol protein [Human immunodeficiency virus 1]
gi|313661159|dbj|BAJ41179.1| Pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 591 YVDGAASRENKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGPEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 646 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIRKEKVYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|302594710|gb|ADL59543.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K++S E T N+ + AI +V +
Sbjct: 1 YVDGAANRETKIGKAGYV-TDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + E + KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSE-------------SELVNLIIEELIGKDKVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|288899148|gb|ADC67106.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQRVVSLSETTNQKTELHAIHLALQ-----DSGSTVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIQKD-------------KVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|288187622|gb|ADC42304.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984960|gb|ACU46552.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGXQKVVHLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQY-------------XLGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984150|gb|ACU46147.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVISLSDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984080|gb|ACU46112.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKAGKAGYVTNRGRQKVVFLNDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 595 VTDSQYALGII--------------QAQPDKSESEJVXQIIEQLIKKEKVYLAWVPAHKG 640
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 641 IGGNEQVDKLVSAGIRK 657
>gi|255983934|gb|ACU46039.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAMGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|238734044|gb|ACR55295.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|170778881|gb|ACB36840.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 441 YVDGAANRETKSGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLDVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|51980231|gb|AAU20784.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K+I+ E T N+ + AI+ P +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDKGKQKVITLTE---TTNQKAELQAIQLALQDSRP-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPNKSESELVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|114841742|dbj|BAF32193.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491536|gb|AAR21942.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|1339799|gb|AAB01352.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 1059
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A A+T +++
Sbjct: 647 YTDGSCNKQSREGKAGYITDRGRDKV---RLLEQTTNQQAELEAFAMAVTDSGPKANIIV 703
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 704 --DSQYVMGIVAGQPTESE-------------SKIVNQIIEEMIKKEAIYVAWVPAHKGI 748
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 749 GGNQEVDHLVSQGIRQ 764
>gi|14209298|dbj|BAB55907.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
gi|18844737|dbj|BAB85459.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1023 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1076 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1123 GIGGNEQVDKLVSSGIRK 1140
>gi|306416416|gb|ADM87055.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416348|gb|ADM87021.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|226425036|gb|ACO53450.1| pol protein [Human immunodeficiency virus 1]
Length = 775
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSITDTTNQKTELQAIYL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++
Sbjct: 696 GIGGNEKVDKLVSAGIRK 713
>gi|256011288|gb|ACU55500.1| pol protein [Human immunodeficiency virus 1]
Length = 721
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S T N+ + AI+ +V +
Sbjct: 435 YVDGAANRET-KMGKAGYVTDRGRQKXVS---LNDTTNQKTELQAIQLALQDSGL-EVNI 489
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 490 XTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 536
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 537 GGNEQVDKLVSAGIRKI 553
>gi|255984166|gb|ACU46155.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|238733882|gb|ACR55152.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKIYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSAGIRK 709
>gi|222428261|gb|ACM49939.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTSKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|119507421|dbj|BAF42634.1| Pol [Human immunodeficiency virus 1]
Length = 1010
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|114841702|dbj|BAF32157.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|42592284|emb|CAF29003.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 568
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 425 YVDGAANRETKLGKAGYVTDRGRQKVVPLENTTNQKTELQAIHLALQ-----DSGLEVNI 479
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 480 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 526
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 527 GGNEQVDKLVSAGIRK 542
>gi|38892737|gb|AAR27732.1| pol protein [Human immunodeficiency virus 1]
gi|212382568|gb|ACJ25605.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KII E ++ + +V +
Sbjct: 593 YVDGAANRET-KMGKAGYITDRGRQKIIPLTETTNQKTELQAIQL----ALKDSGPEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLISKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|37221284|gb|AAQ89773.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DAGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNERVDKLVSAGIRK 657
>gi|37221467|gb|AAQ89862.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|14091536|gb|AAK53787.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|6580988|gb|AAF18397.1|AF190127_5 Pol polyprotein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +GK+KI+S E ++ + + +V +
Sbjct: 594 YVDGAANRET-KMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQESGP----EVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKFYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|22596369|gb|AAN03146.1|AF457067_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE--TTNQRTELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIHAQPDRSDSELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|88174728|gb|ABD39465.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 603 YVDGAANRDTKLGKAGY---VTDRGRQKVISLTD---TTNQKTELEAIHLALQDSG-SEV 655
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 656 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 702
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 703 GIGGNEQVDKLVSSGIRK 720
>gi|13517083|dbj|BAB40421.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN R EL A AL +V
Sbjct: 1023 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE--TTNQRTELHAIYLALQDSG--SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1076 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1123 GIGGNEQVDKLVSNGIRK 1140
>gi|327458241|gb|AEA76560.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458239|gb|AEA76559.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|319429318|gb|ADV56934.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 593 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 640 GIGGNEQVDKLVSNGIRK 657
>gi|306477519|gb|ADM89134.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|302594686|gb|ADL59531.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI KV
Sbjct: 1 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SKV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 54 NIVTDSQYSLGIIQAQPDRSE-------------SELVNQIIEELIKKDQVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIRK 118
>gi|289187302|gb|ADC92230.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288188519|gb|ADC42733.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187866|gb|ADC42420.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984714|gb|ACU46429.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRESKLGKAGYVTDXGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEJVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984182|gb|ACU46163.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALE-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|255984024|gb|ACU46084.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRXTKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 642 GGNEXVDKLVSAGIRK 657
>gi|224986353|gb|ACN74914.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|194399879|gb|ACF60856.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|108860396|dbj|BAE95918.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSKSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
Length = 1208
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 23/133 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG+ + G+GV +K + + AAI + P + +
Sbjct: 955 FTDGSKYLD--RTGFGV----TDIDKSYFYRLPDQCSVFSAEAAAILLASTTPAPKPICV 1008
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS+ V + + + + W+ GH G
Sbjct: 1009 ISDSASVLATINSSSTRHPWIQAVQKNSPSQTV-----------------FLWVPGHCGI 1051
Query: 132 QENEKVDRIARNA 144
+ N + D +A
Sbjct: 1052 RGNVEADHLASKG 1064
>gi|4336331|gb|AAD17757.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLALR-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|49574260|gb|AAT66801.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|325635440|gb|ADZ33300.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635435|gb|ADZ33296.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306416362|gb|ADM87028.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|299013578|gb|ADJ00360.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEEVIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|283521020|gb|ADB25242.1| pol protein [Human immunodeficiency virus 1]
Length = 991
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +
Sbjct: 584 YVDGAANRETXKGKAGYITDKGRQKVVT---LTDTTNQQTELQAILLALXDSGXEANI-- 638
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 639 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIXKERVYLSWVPAHKGI 685
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 686 GGNEQVDKLVSSGIRK 701
>gi|256010915|gb|ACU55314.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAVYLALQXSG-----SEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|254679553|gb|ACT78480.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +GK+KI+S E T N+ + AI +V +
Sbjct: 594 YVDGAANRETKI-GRAGYVTDRGKQKIVSLTE---TTNQKTELQAIYLALQDSGL-EVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|222428306|gb|ACM49975.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|113706907|gb|ABI36566.1| pol protein [Human immunodeficiency virus 1]
Length = 768
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 698 GGNEQVDRLVSAGIRK 713
>gi|114841842|dbj|BAF32283.1| Pol [Human immunodeficiency virus 1]
gi|114841872|dbj|BAF32310.1| Pol [Human immunodeficiency virus 1]
gi|114841882|dbj|BAF32319.1| Pol [Human immunodeficiency virus 1]
gi|114841902|dbj|BAF32337.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|45361101|gb|AAS59323.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37728002|gb|AAR02368.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 23/148 (15%)
Query: 3 SKHLREV-HAYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+ L+E Y DGA + G G+ + GKEK+IS + TTN + EL A + A
Sbjct: 587 PEPLKEAPTYYVDGAANRVSKLGKAGY---VTNTGKEKVIS--LESTTNQKAELEAVLLA 641
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L ++ L TDS YV G S + + + E ++
Sbjct: 642 LKEGPP--RMNLVTDSQYV-------------LGIVASQPQESTSPLVEQIIQELLSKEA 686
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE+VD++ +
Sbjct: 687 IYLSWVPAHKGIGGNEEVDKLVNSGIRQ 714
>gi|37221442|gb|AAQ89850.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|49574437|gb|AAT66884.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTGTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|11066489|gb|AAG28605.1|AF259954_2 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
gi|11066499|gb|AAG28614.1|AF259955_2 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|82571340|gb|ABB84104.1| pol protein [Human immunodeficiency virus 1]
gi|212382844|gb|ACJ25726.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLINKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306477625|gb|ADM89187.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|299013621|gb|ADJ00398.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|288187608|gb|ADC42297.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLPDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSGGIRKI 658
>gi|282597979|gb|ADA83230.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFPETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNLIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010805|gb|ACU55259.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +S + T + +A +V
Sbjct: 596 YVDGAANRETKLGKAGY-VTDRXRQKVVPLSXTTNQKTELQAIHLAL------QDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRKI 714
>gi|255984938|gb|ACU46541.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTSRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984812|gb|ACU46478.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYX-------------LGIIQAQPDKSESXLVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984220|gb|ACU46182.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQXIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984176|gb|ACU46160.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256252517|dbj|BAH97632.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238734168|gb|ACR55405.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNSGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428627|gb|ACM50231.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|242803300|ref|XP_002484146.1| hypothetical protein TSTA_019730 [Talaromyces stipitatus ATCC
10500]
gi|218717491|gb|EED16912.1| hypothetical protein TSTA_019730 [Talaromyces stipitatus ATCC
10500]
Length = 614
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 97 SDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+T+ K + + + + W+ GHA ENE D A+ A S
Sbjct: 201 KSFRTLAAAWPLRKRLPHTKSGSIQIRWVPGHAKIPENEVADLAAKEGAAS 251
>gi|114841812|dbj|BAF32256.1| Pol [Human immunodeficiency virus 1]
gi|114841822|dbj|BAF32265.1| Pol [Human immunodeficiency virus 1]
gi|114841852|dbj|BAF32292.1| Pol [Human immunodeficiency virus 1]
gi|114841912|dbj|BAF32346.1| Pol [Human immunodeficiency virus 1]
gi|114841922|dbj|BAF32355.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|49574385|gb|AAT66862.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A+ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALL-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478217|gb|ADM89483.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGRAGYVTNKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRKI 559
>gi|256011652|gb|ACU55682.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKXISLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984144|gb|ACU46144.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPJADTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256252507|dbj|BAH97623.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|222428598|gb|ACM50208.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|170778935|gb|ACB36867.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|108860406|dbj|BAE95927.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELKAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESQLVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|93210746|gb|ABF00716.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIVTLSDTTNQRTELQAIQIALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|17046693|gb|AAL34716.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKIVSLAETTNQKAELQAIQLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|25167021|gb|AAN73790.1|AF484517_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E T N+ + AI +V
Sbjct: 1023 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 1076 NIVTDSQYA-------------LGIIQAQPDKSDSEIVNQIIEKLIEKDKVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1123 GIGGNEQVDKLVSSGIRK 1140
>gi|3403210|gb|AAC29045.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|325636339|gb|ADZ34074.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|313118840|gb|ADR32332.1| pol protein [Human immunodeficiency virus 2]
Length = 649
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + ++TTN + EL A ALT +++
Sbjct: 539 YTDGSCNRQSKEGKAGYVTDRGRDRV---KVLEQTTNQQAELEAFAMALTDSGPKANIIV 595
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 596 --DSQYVMGIVAGQPTESE-------------NXIVNQIIEEMIRKXAIYVAWVPAHKGI 640
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 641 GGNQEVDHL 649
>gi|312271172|gb|ADQ56986.1| pol protein [Human immunodeficiency virus 1]
Length = 994
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 587 YVDGAASRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELQAIYLALQDSEL-EV 639
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 640 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 686
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 687 GIGGNEQVDKLVSSGIRK 704
>gi|308445404|gb|ADO32882.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGASNRETKLGKAGYVTDRGRQKVITLADTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGVRK 714
>gi|306416284|gb|ADM86989.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594732|gb|ADL59554.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 1 YVDGASNRETKLGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 40
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + +V L W+ H
Sbjct: 41 AIYLALQDSGLEVNIVTDSQYALGIIHAQPDQSDSEIVNQIIEKLIEKERVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|302594726|gb|ADL59551.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKAVPFTDTTNQKTELQAINLALQ-----DSGPEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|260103562|gb|ACX31794.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|256011316|gb|ACU55514.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ +K KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDXSESELVSKIIEQLIKKE-------------KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984096|gb|ACU46120.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|255984050|gb|ACU46097.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGXQKVITLTETTNQKTELHAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAKPDXSESELVNQIIEKLIXKDKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|255984032|gb|ACU46088.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|222428578|gb|ACM50192.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S + ++ + +V +
Sbjct: 597 YVDGAANRET-KAGKAGYVTDRGRQKVVSITDTTNQKTELQAIYL----ALQDSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRK 714
>gi|212382586|gb|ACJ25613.1| pol protein [Human immunodeficiency virus 1]
Length = 938
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI+ +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKAELQAIQLALQDSGL-EV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 693 GIGGNEQVDKLVSKGIRK 710
>gi|156254341|gb|ABU62660.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDATNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKERVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|14030532|gb|AAK52939.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKEKIYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 530 GGNEQVDKLVSSGIRK 545
>gi|325636388|gb|ADZ34115.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416448|gb|ADM87071.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S E T N+ + AI +V
Sbjct: 441 YVDGAANREFKLGKAGY---VTDRGKQKVVSLTE---TTNQKIELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416358|gb|ADM87026.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E T N+ + AI +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|299013601|gb|ADJ00380.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|295883834|gb|ADG57067.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 595 YVDGAASRETREGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + A+ KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIAKEKVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIR 711
>gi|289546465|gb|ADD10112.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGASSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|256010763|gb|ACU55238.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIFLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|212382784|gb|ACJ25700.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 590 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 643 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|212382721|gb|ACJ25671.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + L V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPLTGVETFYVDGAANRETKMGKAGYVTDRGRQKIVTITDTTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGPEVNIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|167832821|gb|ACA01985.1| pol protein [Human immunodeficiency virus 1]
Length = 728
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 552 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 604
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 605 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 651
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 652 GIGGNEQVDKLVSNGIRKI 670
>gi|170778931|gb|ACB36865.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGXQRVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|158967398|gb|ABW86742.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIKLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|158967349|gb|ABW86698.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKXGKAGYVTDRGRQKVVSLXETTNQKTELHAIHLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRKI 720
>gi|87245368|gb|ABD34860.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELVRKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|38892681|gb|AAR27682.1| pol protein [Human immunodeficiency virus 1]
gi|212382591|gb|ACJ25615.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +S + T + +A +V
Sbjct: 592 YVDGAANRETKLGRAGY-VTDRGRQKIVSLSETANQKTELQAIQLAL------QDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|37221420|gb|AAQ89839.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKIISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221422|gb|AAQ89840.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKIISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13095139|gb|AAK12152.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 496 NIVTDSQYA-------------LGIIQAKPDQSESELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095326|gb|AAK12227.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKSGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|13095141|gb|AAK12153.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 496 NIVTDSQYA-------------LGIIQAKPDQSESELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|49574387|gb|AAT66863.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLITKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|5733943|gb|AAD49781.1|AF107770_3 Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLAETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVTQIIEELIKKDRVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13891894|gb|AAG50326.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRKI 559
>gi|326370823|gb|ADZ56581.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYAMGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|325634605|gb|ADZ32584.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLTWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGVR 710
>gi|299013611|gb|ADJ00389.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 592 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|299013568|gb|ADJ00351.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|259122662|gb|ACV92629.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K V+ KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDKSESELVNKIIEKLVEKD-------------KVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|288558537|dbj|BAI68325.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|288187824|gb|ADC42399.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011756|gb|ACU55734.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011200|gb|ACU55456.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ +K KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDISESELVNKIIEQLIKKE-------------KVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSKGIR 711
>gi|255984876|gb|ACU46510.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRXGKAGYVTNRGRQKVVXLNDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984846|gb|ACU46495.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|229661960|gb|ACQ84410.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSDSELVSQIIEQLINKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|113171671|gb|ABI30941.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTPNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|112497932|gb|ABI20330.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDXGRQKXVSITDTTNQKTELQAIHLALQ-----DSGSAVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|86277598|gb|ABC88319.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE +D++ +
Sbjct: 697 GGNEHIDKLVSSGIRK 712
>gi|37496483|emb|CAD48441.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1495
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1088 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 1142
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 1143 VTDSQYALGIIQSQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 1189
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1190 GGNEQVDKLVSNGIRK 1205
>gi|37221368|gb|AAQ89813.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221366|gb|AAQ89812.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221370|gb|AAQ89814.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|22596329|gb|AAN03110.1|AF457063_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|14091528|gb|AAK53783.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|14091506|gb|AAK53772.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNVVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|1478058|gb|AAB51137.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K +K KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIKKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|3098584|gb|AAC68851.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTNTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|7715886|gb|AAF68180.1| pol protein [Human immunodeficiency virus 1]
Length = 768
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G+ K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRAKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|60652084|gb|AAX33153.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328834479|gb|AEB52884.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 604 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 657 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 703
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 704 GIGGNEQVDKLVSNGIRK 721
>gi|327474989|gb|AEA77093.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|327458231|gb|AEA76555.1| pol protein [Human immunodeficiency virus 1]
gi|327458233|gb|AEA76556.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|326370677|gb|ADZ56454.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYAMGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|325635103|gb|ADZ33015.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|312602002|gb|ADQ92556.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|302594704|gb|ADL59540.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSEAELVNQIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|289187246|gb|ADC92202.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTBKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEZLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011196|gb|ACU55454.1| pol protein [Human immunodeficiency virus 1]
Length = 952
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T + +V J
Sbjct: 545 YVDGAANRETKJGKAGYVTBRGRQKXV-----PLTXTTNQKTXXXXXXXXXQDSGLEVNJ 599
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 600 VTDSQYA-------------LGXIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 646
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 647 GGNEQVDKLVSAGIRK 662
>gi|164415891|gb|AAU14976.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGKQKIITLADTTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLINKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|156254383|gb|ABU62681.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSTGIRK 118
>gi|114841692|dbj|BAF32148.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------VGIIQAQPDRSDSEVVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114841832|dbj|BAF32274.1| Pol [Human immunodeficiency virus 1]
gi|114841862|dbj|BAF32301.1| Pol [Human immunodeficiency virus 1]
gi|114841892|dbj|BAF32328.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|49574389|gb|AAT66864.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQVQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325636422|gb|ADZ34144.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635499|gb|ADZ33349.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635466|gb|ADZ33322.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288188464|gb|ADC42706.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011736|gb|ACU55724.1| pol protein [Human immunodeficiency virus 1]
Length = 986
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 579 YVDGAANRETKLGKAGYVTXRGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGLEVNI 633
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 634 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 680
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 681 GGNEQVDKLVSAGIRKI 697
>gi|256011058|gb|ACU55385.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010715|gb|ACU55214.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVHLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|255984834|gb|ACU46489.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDXGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984794|gb|ACU46469.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKIIPINDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984284|gb|ACU46214.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984142|gb|ACU46143.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|255983988|gb|ACU46066.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTDRGXQKVVSIXDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|255983964|gb|ACU46054.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|255514130|gb|EET90393.1| ribonuclease H [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 139
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 7 REVHAYTDGACSGNPGPGGWGV-LLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
RE +TDGA GNPGP G + K TNN E A I AL K
Sbjct: 3 REFVIFTDGAARGNPGPSASGYMIFENGKKVAEEFVFNGSKTNNYAEYNAIIMALERCKE 62
Query: 66 P------CKVLLYTDSSYVHKGFSQWI 86
C L++DS V K +
Sbjct: 63 MLKDAEECSAKLFSDSELVVKQLNGEY 89
>gi|238734027|gb|ACR55280.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKQGKAGY---VTDRGRQKIVSLSE---TTNQKTELQAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYAIGIIQAQPDRSE-------------SDLVNLIIEQLIQKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|226348540|gb|ACO50589.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|93210804|gb|ABF00768.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 598 YVDGAANRETKLGRAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPGKSESELVNQIIEQLIKKERVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 698 GIGGNEQVDKLVSSGIRK 715
>gi|63098286|gb|AAY32339.1| pol protein [Human immunodeficiency virus 1]
gi|212383146|gb|ACJ25869.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +
Sbjct: 604 YVDGAANRETKIGKAGYVTDKGRQKVVT---LTETTNQQAELQAIQLALQDSGSEANI-- 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + ++ L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKERIYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|60218865|gb|AAX14843.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------AEVVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|37677825|gb|AAQ97498.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVPLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|32261279|gb|AAP74179.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQNSGL-----EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSE-------------SELVNQIIKQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|13095421|gb|AAK12266.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S + T N+ + AI +V +
Sbjct: 441 YVDGAANRET-KLGIAGYVTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13095311|gb|AAK12221.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDITNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|3098574|gb|AAC68842.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTNTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|60652016|gb|AAX33092.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458349|gb|AEA76614.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSDSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|327458251|gb|AEA76565.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTNRGRQKVVSLTDTTNQKTEFQAIYLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQATPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|326370686|gb|ADZ56462.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKDKVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|325634806|gb|ADZ32759.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIRKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|312602041|gb|ADQ92574.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRHKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDNSESELVNQIIEELIKKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306477691|gb|ADM89220.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306416222|gb|ADM86958.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289187217|gb|ADC92188.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187678|gb|ADC42330.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011194|gb|ACU55453.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQRTELQAIQLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEKLIQKERVYLTWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRKI 716
>gi|148745851|emb|CAK49314.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIHAQPDRSDSELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|148745891|emb|CAK49334.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQRTELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRRI 714
>gi|37221426|gb|AAQ89842.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221424|gb|AAQ89841.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13540183|gb|AAK29349.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIKLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|13569309|gb|AAK31045.1|AF286233_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|86753553|gb|ABD14981.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + L V Y DGA + G G + ++ + + A++
Sbjct: 580 LEKEPLTGVETFYVDGAANRETKMGKAGYVTDRGRQKIVTITDTTNQKTELQAIQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS Y G + ++ + + + +
Sbjct: 639 ----DSGPEVNIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
V L W+ H G NE+VD++ +
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|68522095|gb|AAY98686.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIELLIKKERVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 706 GGNEQVDKLVSNGIRK 721
>gi|4262338|gb|AAD14574.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I ETTN + EL A L +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGRQIIIT---LTETTNQKAELHAI--QLALQDSQSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|327458365|gb|AEA76622.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAILLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSKIIEQLINKEXVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|326370667|gb|ADZ56445.1| pol protein [Human immunodeficiency virus 1]
Length = 1018
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 611 YVDGAANRETKLGKAGYVTDRGRQKVISLPDTTNQKTELQAIQLALQ-----DSGLEVNI 665
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + V L W+ H G
Sbjct: 666 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKDXVYLTWVPAHKGI 712
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 713 GGNEQVDKLVSAGIRK 728
>gi|325635423|gb|ADZ33286.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306477697|gb|ADM89223.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306477683|gb|ADM89216.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|289469790|gb|ADC96550.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRNKVISLADTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDKSK-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187813|gb|ADC42394.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGVIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256011714|gb|ACU55713.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011296|gb|ACU55504.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTSRGKQKVVPLTDTTNQKAELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011292|gb|ACU55502.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDTKLGKAGYVTNKGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|256011224|gb|ACU55468.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQESGL-----EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQSQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984010|gb|ACU46077.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGISK 657
>gi|156254411|gb|ABU62695.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGPEVNV 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|156057831|ref|XP_001594839.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980]
gi|154702432|gb|EDO02171.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 171 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 218
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 219 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 278
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 279 GAEISLNWVPGHTSVQGNELADSLAKEA 306
>gi|49472923|gb|AAT66268.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTNRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|60652026|gb|AAX33101.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328834322|gb|AEB52744.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIQLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|325636363|gb|ADZ34094.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636315|gb|ADZ34053.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|325634798|gb|ADZ32752.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIRKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|325634790|gb|ADZ32745.1| pol protein [Human immunodeficiency virus 1]
gi|325634822|gb|ADZ32773.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIRKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306416310|gb|ADM87002.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVFLTETTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVR 557
>gi|306416302|gb|ADM86998.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASREIKLGKAGY---VTNRGRQKVVSLSE---TTNQQTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011184|gb|ACU55448.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ T N+ + AI +V
Sbjct: 605 YVDGAANRETKLGKAGY------XTDRGRQKVVSINDTTNQKTELQAIHLALQDSG-SEV 657
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 658 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEKLINKEKVYLAWVPAHK 704
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 705 GIGGNEQVDKLVSSGIRKI 723
>gi|256010984|gb|ACU55348.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGASNRETKJGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSXIIEQLINKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRKI 713
>gi|256010845|gb|ACU55279.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSVTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984444|gb|ACU46294.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|224116250|ref|XP_002317250.1| predicted protein [Populus trichocarpa]
gi|222860315|gb|EEE97862.1| predicted protein [Populus trichocarpa]
Length = 171
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 39/143 (27%), Gaps = 18/143 (12%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALKYPCKV 69
DG+C + G G + R E ++ E M A V
Sbjct: 19 DGSCKDSAGKASIGGVFRNHEAEFLLGYAESIGRTTSMIAELAALRRGLELVLENGWGNV 78
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L DS + + + + + +L V H
Sbjct: 79 WLEGDSKSLVDIIVKRKLVRCKEAQRQVSYINLIIPELKNCLVT--------------HV 124
Query: 130 GNQENEKVDRIARNAAVSFKNKI 152
+ N D++AR A K KI
Sbjct: 125 FREGNRAADKLARIAYQLQKPKI 147
>gi|194399849|gb|ACF60829.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|170778891|gb|ACB36845.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K+ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRKKIISLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|156254401|gb|ABU62690.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKIYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGVRK 118
>gi|156254371|gb|ABU62675.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K+IS + T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGKQKVISLTD---TTNQKTELQAIHLALQDSGL-EV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSAGIRK 118
>gi|119507999|dbj|BAF42398.1| Pol [Human immunodeficiency virus 1]
gi|119508009|dbj|BAF42407.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELYAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------RVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|90903144|gb|ABE02157.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K+I+ E T N+ + AI +V
Sbjct: 595 YVDGAANKETKLGKAGY---ITDKGKQKVITIQE---TTNQKTELHAIYLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLTWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|36365552|gb|AAQ86755.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPDTTNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|14091500|gb|AAK53769.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALKDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|49574284|gb|AAT66813.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|221478|dbj|BAA00993.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636351|gb|ADZ34084.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635476|gb|ADZ33330.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325634814|gb|ADZ32766.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIRKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|325634520|gb|ADZ32510.1| pol protein [Human immunodeficiency virus 1]
gi|325634543|gb|ADZ32530.1| pol protein [Human immunodeficiency virus 1]
gi|325635111|gb|ADZ33022.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|312602032|gb|ADQ92570.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|312601943|gb|ADQ92528.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|304347441|gb|ADM25283.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGREKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|302685830|ref|XP_003032595.1| hypothetical protein SCHCODRAFT_40345 [Schizophyllum commune H4-8]
gi|300106289|gb|EFI97692.1| hypothetical protein SCHCODRAFT_40345 [Schizophyllum commune H4-8]
Length = 138
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + W+ GH G + NE+VD A+ AA
Sbjct: 57 WVRVHRLRASRRTLSLIVAWVPGHVGVEGNERVDAEAKAAAEGC 100
>gi|263200976|gb|ACY70077.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTDRGRQKVVPLADTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256011704|gb|ACU55708.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+ S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVASLTD---TTNQKAELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011286|gb|ACU55499.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRDTKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSXGIRK 719
>gi|255984686|gb|ACU46415.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984376|gb|ACU46260.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238634107|gb|ACR52015.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++ +
Sbjct: 699 GIGGNEQADKLVSSGIRK 716
>gi|93210676|gb|ABF00653.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDKSEPELV-------------SQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRKI 710
>gi|58220871|gb|AAW68062.1| pol protein [Human immunodeficiency virus 1]
gi|212383311|gb|ACJ25939.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQARPDKSESELVNQIIERLVKKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|37654282|gb|AAQ96246.1| LRRGT00033 [Rattus norvegicus]
Length = 2042
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 19/150 (12%)
Query: 12 YTDGACSGNP------GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
YTD N G V + K I + T+ + + A+ +
Sbjct: 626 YTD----DNSFLAEGERKAGAAVTMEDK---VIWAKALPAGTSTQRAELIALTQALKMAK 678
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYW 124
++ +YTDS Y + +++ G TS K +KN + +EA ++ +
Sbjct: 679 GKRLNVYTDSHYAFATAHIHGEIYRRQGLLTSKDKDIKNKAKILALLEALFLPKRLSIIH 738
Query: 125 IKGHA-GN----QENEKVDRIARNAAVSFK 149
GH G+ + N D AR AA+S +
Sbjct: 739 CPGHQKGHNPKARRNRLADATAREAAMSKQ 768
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 35 KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94
+ I + +T+ + + A+ + ++ +YTDS Y + +++ G
Sbjct: 1568 DKVIWAKALPVSTSAQRAELIALTQALKMTKGKRLNIYTDSRYAFATAHIHGEIYRRRGL 1627
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG--NQE---NEKVDRIARNAAVSFK 149
TS+ K + I ++ + ++ + GH N E N D AR AA+S +
Sbjct: 1628 LTSEGKDMAKILALLEAL--FLPKRLSIIHCPGHQKGQNPEARRNRLADATAREAAMSKQ 1685
>gi|37221520|gb|AAQ89888.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANKDTKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|26245470|gb|AAN77398.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKIVTLTETTNQKSELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|263092|gb|AAB24838.1| reverse transcriptase, RT [human immunodeficiency virus type 1
HIV-1, zidovudine (AZT)-resistant, Peptide, 559 aa]
Length = 559
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|68522055|gb|AAY98650.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 805
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGSEVNV 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|325636376|gb|ADZ34105.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635375|gb|ADZ33244.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|306477649|gb|ADM89199.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVIFLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187660|gb|ADC42321.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRRI 658
>gi|290994164|ref|XP_002679702.1| predicted protein [Naegleria gruberi]
gi|284093320|gb|EFC46958.1| predicted protein [Naegleria gruberi]
Length = 406
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL-TALKYP 66
E +TDG+ S N G+ V+++ K +N M ++AI +
Sbjct: 96 EFTIWTDGSKSEN--KVGFSVIIQNNEFTKGYKYKLHSYHSNNMAELSAITTALHIIPPN 153
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ TDS K + T+ K K I + + ++ + + + W K
Sbjct: 154 SNAKVLTDSEIAVKII-----------YNTNYKGQFKQIKDEITNLISTKKLQASIEWTK 202
Query: 127 GHAGN-QENEKVDRIARNA 144
H G N D+ A+ A
Sbjct: 203 AHTGITDGNNYADKKAKQA 221
>gi|256011672|gb|ACU55692.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 595 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESALVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|255984662|gb|ACU46403.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984470|gb|ACU46307.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 41 YVDGAANRETXLGKAGY---VTNRGRQKVVSLTDTTNQKTELQAIXL----ALQDSGSEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRKI 159
>gi|255984228|gb|ACU46186.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKXVPLXDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255983998|gb|ACU46071.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLXDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|197283750|gb|ACH57430.1| pol protein [Human immunodeficiency virus 1]
Length = 771
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGRQKVVT---LPETTNQKTELHAIHLALQDSG--SEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIERLIGKDRVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|170676541|gb|ACB30415.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|156037302|ref|XP_001586378.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980]
gi|154697773|gb|EDN97511.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 486
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I N+ E + I +
Sbjct: 171 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRNSYQETIN-IGVNQLVYNG 218
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 219 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNK 278
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 279 GAEISLNWVPGHTSVQGNELADSLAKEA 306
>gi|56193005|gb|AAV84110.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKIVSLTETTNQKTELQAIKLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 702 GGNEKVDKLVSSGIRK 717
>gi|37677875|gb|AAQ97543.1| Pol protein [Human immunodeficiency virus 1]
gi|37677885|gb|AAQ97552.1| Gag protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLTWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 695 GGNEKVDKLVSAGIRK 710
>gi|60651898|gb|AAX32986.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN R EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVVS--LTDTTNQRTELQAIHLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|325638366|gb|ADZ35787.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|325635019|gb|ADZ32945.1| pol protein [Human immunodeficiency virus 1]
Length = 761
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 656 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLITKE-----KVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|302780573|ref|XP_002972061.1| hypothetical protein SELMODRAFT_412538 [Selaginella moellendorffii]
gi|300160360|gb|EFJ26978.1| hypothetical protein SELMODRAFT_412538 [Selaginella moellendorffii]
Length = 411
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 30/167 (17%)
Query: 10 HAYTDGACS-GNPG---PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI-------- 57
+ +TDG+ G G+GV + ++ + + + A
Sbjct: 193 NVFTDGSLIVPEGGEAVKAGYGVYYVWCNGGCGLAKHVQGNSRISYDAWAMDGSRKIRII 252
Query: 58 -------KALTALKYPCKVLLYTDSSYVH-----KGFSQWIKKWQQNGWKTSDKKTVKNI 105
++ ++ + ++ + + +
Sbjct: 253 ELALGGDESALTMELLAILEALLLVQSFWGYSRLYLYTDSMAALKLLAEFQKRPGSFARH 312
Query: 106 DL------WMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+S V L ++ HAG NE DR+A+ A
Sbjct: 313 VHGEVLAAITSVARSSYIEHVHLLKVRAHAGLFGNEAADRLAKIGAN 359
>gi|299013588|gb|ADJ00369.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 590 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 643 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|288899122|gb|ADC67093.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAINLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYAIGII-------------QAQPDKSESELVSQIVEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSKGIRK 717
>gi|288187638|gb|ADC42311.1| pol protein [Human immunodeficiency virus 1]
Length = 668
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTSKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984398|gb|ACU46271.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 143 GGNEKVDKLVSAGIRK 158
>gi|255983968|gb|ACU46056.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|156034873|ref|XP_001585855.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980]
gi|154698775|gb|EDN98513.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 731
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 416 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 468
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 469 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 516
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 517 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 551
>gi|156056779|ref|XP_001594313.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980]
gi|154701906|gb|EDO01645.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 798 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 850
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 851 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 898
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 899 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 933
>gi|156032517|ref|XP_001585096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980]
gi|154699358|gb|EDN99096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1326
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 1010 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 1062
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 1063 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 1110
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 1111 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 1145
>gi|156039259|ref|XP_001586737.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980]
gi|154697503|gb|EDN97241.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1232
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 916 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 968
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 969 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 1016
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 1017 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 1051
>gi|156062764|ref|XP_001597304.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980]
gi|154696834|gb|EDN96572.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1387
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 1071 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 1123
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 1124 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 1171
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 1172 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 1206
>gi|63014508|gb|AAY25676.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R + T +
Sbjct: 597 YVDGAANRETKLGKAGY--------------------VTDRGKQKVVSLTETTNQKTELH 636
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 637 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|37935582|gb|AAO65555.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++KI+S E ++ + +V +
Sbjct: 598 YVDGAANRETKIGKAG-YITDKGRQKIVSLTETTNQKTELQAIQL----ALQDSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 700 GGNEQIDKLVSSGIRK 715
>gi|37682841|gb|AAQ98420.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 595 YVDGAASRKTKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + K+ L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKIYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|17046543|gb|AAL34581.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 590 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGPEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 643 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|22596349|gb|AAN03128.1|AF457065_2 pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 594 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 633
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + KV L W+ H
Sbjct: 634 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSDSELVNQIIERLIGKDKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRKI 712
>gi|74315740|gb|ABA02466.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDKGKQKILTIQETTNQKTELHAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SALVNQIIEQLIKKEKVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|77416878|sp|P03367|POL_HV1BR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1447
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1094
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1095 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1141
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1142 GGNEQVDKLVSAGIRK 1157
>gi|1398975|dbj|BAA12989.1| Pol [Human immunodeficiency virus 1]
Length = 1015
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 608 YVDGAANRETRLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 663 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|325636368|gb|ADZ34098.1| pol protein [Human immunodeficiency virus 1]
gi|325636401|gb|ADZ34126.1| pol protein [Human immunodeficiency virus 1]
gi|325636409|gb|ADZ34133.1| pol protein [Human immunodeficiency virus 1]
gi|325636417|gb|ADZ34140.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416480|gb|ADM87087.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGA-CSGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ + +G++K++S E + + +V
Sbjct: 441 YVDGAVSKENKVGKAGY---VTDRGRQKVVSLSETTNQKTELHAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|299013558|gb|ADJ00342.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 592 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|256011088|gb|ACU55400.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDKGRQKVXTLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKDKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|255984430|gb|ACU46287.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238734054|gb|ACR55304.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|209156856|gb|ACI39911.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E TTN + EL A L +V
Sbjct: 602 YVDGAANRETKTGKAGY---VTDRGRQKAVSLTE--TTNQKAELHAI--QLALQDSGSEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRKI 720
>gi|170778887|gb|ACB36843.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQVIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|156045854|ref|XP_001589482.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980]
gi|154693599|gb|EDN93337.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 778
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 36/155 (23%)
Query: 7 REVHAYTDGAC--------------SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRME 52
+ YTD + N + ++ I
Sbjct: 220 NTITIYTDASSTLEGIGIGIGIAVILPNGR-------ISHQETINIGVNQLVYNGELLGV 272
Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV 112
A A + + K +Y+D+ KT ++ +
Sbjct: 273 TKAIEYANSIAQPGNKFKIYSDNQAGL------------FRLKTPSDLPGQSCQIKAIKA 320
Query: 113 EASAQHK---VDLYWIKGHAGNQENEKVDRIARNA 144
+ Q+K + L W+ GH Q NE D +A+ A
Sbjct: 321 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 355
>gi|151368123|gb|ABS10794.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI KV
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SKV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSEAEIVNKIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSXGIRK 713
>gi|90812163|gb|ABD98345.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDKGRQKTVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|55275157|gb|AAV49379.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSIPDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G+ + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGFIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|38491658|gb|AAR22051.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN + EL A AL +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE--TTNQKAELHAIYLALQDSG--SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESESVSQIIEKLIEKDKVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 698 GIGGNEQVDKLVSSGIRK 715
>gi|37221490|gb|AAQ89873.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|2570314|gb|AAC97575.1| gag-Pol fusion [Human immunodeficiency virus 1]
Length = 1437
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1030 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLSWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1132 GGNEQVDKLVSNGIRKI 1148
>gi|74632|pir||GNLJG3 HIV-1 retropepsin (EC 3.4.23.16) - simian immunodeficiency virus
(macaque isolate)
gi|1335590|emb|CAA68380.1| unnamed protein product [Simian immunodeficiency virus]
gi|225683|prf||1310330B gene pol
Length = 1056
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+CS G G+ + +GK+K+ ++TTN + EL A + ALT +
Sbjct: 644 YVDGSCSKQSKEGKAGY---ITDRGKDKV--KVLEQTTNQQAELEAFLMALTDSGPKANI 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS YV + + + + + E + ++ + W+ H
Sbjct: 699 IV--DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKTEIYVAWVPAHK 743
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 744 GIGGNQEIDHLVSQGIRQ 761
>gi|327458285|gb|AEA76582.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQATPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|325635367|gb|ADZ33237.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|312602026|gb|ADQ92567.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTDTTNQRTELQAIHLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312602023|gb|ADQ92566.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKAGKAGYVTDRGRQKVVTLSDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306477689|gb|ADM89219.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|302594722|gb|ADL59549.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 1 YVDGASNRETKLGKAGY---VTDRGRQKVISLNE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 54 NIVTDSQYA--------LGIIQAQPDRSDSELVNLIIEKLIEKE-----KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRKI 119
>gi|262348247|gb|ACY56342.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 698 GGNEKVDKLVSSGIRK 713
>gi|256011482|gb|ACU55597.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ ++ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKERIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011418|gb|ACU55565.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGTEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSAGIRK 723
>gi|256011090|gb|ACU55401.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + E + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDTSESELVNQIIEELIKKEKIYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 701 GGNEKVDKLVSAGIRK 716
>gi|256010953|gb|ACU55333.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGKQKVVSLTNTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEJVSQIIEELIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984448|gb|ACU46296.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|194399969|gb|ACF60937.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ I + A++ +V +
Sbjct: 595 YVDGAAHRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLVKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|117940221|gb|ABK58237.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETRLGKAGY---VTDRGRQKVVSLTDTTNQQTELQAINL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSQGIRRI 713
>gi|112497912|gb|ABI20312.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSAVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|38491546|gb|AAR21951.1| pol protein [Human immunodeficiency virus 1]
gi|282598096|gb|ADA83330.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|17046623|gb|AAL34653.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGATNRETKRGNAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSEAELVNQIIEQLIQKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSKGIRK 715
>gi|22596535|gb|AAN03293.1|AF457086_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVSK-------------IIEELIRKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VDR+ +
Sbjct: 696 GIGGNEQVDRLVSSGIRK 713
>gi|263093|gb|AAB24839.1| reverse transcriptase, RT [human immunodeficiency virus type 1
HIV-1, zidovudine (AZT)-sensitive, Peptide, 559 aa]
Length = 559
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|60652134|gb|AAX33198.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIISLTNTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635138|gb|ADZ33045.1| pol protein [Human immunodeficiency virus 1]
gi|325635143|gb|ADZ33049.1| pol protein [Human immunodeficiency virus 1]
gi|325635148|gb|ADZ33053.1| pol protein [Human immunodeficiency virus 1]
gi|325635167|gb|ADZ33069.1| pol protein [Human immunodeficiency virus 1]
gi|325635172|gb|ADZ33073.1| pol protein [Human immunodeficiency virus 1]
gi|325635177|gb|ADZ33077.1| pol protein [Human immunodeficiency virus 1]
gi|325635203|gb|ADZ33099.1| pol protein [Human immunodeficiency virus 1]
gi|325635211|gb|ADZ33106.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|323488612|ref|ZP_08093856.1| hypothetical protein GPDM_04699 [Planococcus donghaensis MPA1U2]
gi|323397829|gb|EGA90631.1| hypothetical protein GPDM_04699 [Planococcus donghaensis MPA1U2]
Length = 219
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 35/147 (23%), Gaps = 24/147 (16%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG---------EKETTNNRMELMAAIK 58
+V Y DG + G G G ++ YK K +
Sbjct: 73 QVQIYFDGGYERSSGDAGLGCVIYYKQNGKSYRRRTNAKLDELSSNNEAEYAALYFCLQE 132
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQN-GWKTSDKKTVKNIDLWMKFVEASAQ 117
V DS V G + G K N +
Sbjct: 133 LEYLEVRRQVVSFIGDSRIVINGMEGEWPIMENKLGPWIQRIKEKLNELGIQDEYQL--- 189
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
A +EN + D++A A
Sbjct: 190 -----------APRKENAEADKLATQA 205
>gi|312601909|gb|ADQ92511.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLMDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306416376|gb|ADM87035.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGVR 557
>gi|306416354|gb|ADM87024.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416250|gb|ADM86972.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGVR 557
>gi|260533754|gb|ACX45151.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRGTKIGKAGYVTDRGRQKVVSLTETTNQKTELYAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010949|gb|ACU55331.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAABRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDISESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984962|gb|ACU46553.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQXSGX-----EVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQXQPDRSE-------------SELVXQIIEXLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984680|gb|ACU46412.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVXSLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984466|gb|ACU46305.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|255984442|gb|ACU46293.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984462|gb|ACU46303.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984324|gb|ACU46234.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTNRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|218347062|emb|CAQ60125.1| Pol protein [Simian immunodeficiency virus - olc]
Length = 994
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 18/147 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ Y DGA + G G + + + +E++N + E+ A I+AL
Sbjct: 586 PAPMEVETFYVDGAYNRKSKEGKAGYVSSGGKHKIVH---IQESSNQKAEIRAIIEALRD 642
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +V + TDS Y + + + + E + ++ +
Sbjct: 643 SK--SEVNIVTDSLYAMGIVLEKPEVSE-------------EPLIQELIKELEKKERIYI 687
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
W+ H G N++VD++ + +
Sbjct: 688 GWVPAHKGLGGNQEVDQLVSKGIRTKQ 714
>gi|170778911|gb|ACB36855.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ +K KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDXSESELVSKIIEQLIKKE-------------KVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|170778905|gb|ACB36852.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRKI 559
>gi|158056529|emb|CAP11075.1| polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSKVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|63014537|gb|AAY25701.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 594 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|37221396|gb|AAQ89827.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANREXKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|8920374|emb|CAB96407.1| Gag-Pol fusion polyprotein precursor [Simian immunodeficiency virus]
Length = 1440
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + TTN + EL A AL ++ V +
Sbjct: 1029 YVDGAANRETKKGKAGYITDRGRQKIIN---LENTTNQKAELTAVYLALQDAEHI--VNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + E + K L W+ H G
Sbjct: 1084 VTDSQYVLGIIHSQPDQSE-------------SELVGSIIEELIKKEKSYLSWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1131 GGNEQVDKLVSSGIRK 1146
>gi|306477651|gb|ADM89200.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVIFLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|299802364|gb|ADJ52023.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLKDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010988|gb|ACU55350.1| pol protein [Human immunodeficiency virus 1]
Length = 992
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 585 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAINLALQ-----DSGLEVNI 639
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 640 VTDSQYA-------------LGIIHAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 686
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 687 GGNEQVDKLVSAGIRK 702
>gi|256010711|gb|ACU55212.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGGEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010705|gb|ACU55209.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SEVVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|255984556|gb|ACU46350.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNXGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238733905|gb|ACR55172.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDSSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|226348744|gb|ACO50691.1| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 368 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 422
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 423 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 469
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 470 GGNEQVDKLVSAGIRK 485
>gi|222428647|gb|ACM50247.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|212382855|gb|ACJ25731.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELQAIKLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|212639318|ref|YP_002315838.1| hypothetical protein Aflv_1487 [Anoxybacillus flavithermus WK1]
gi|212560798|gb|ACJ33853.1| Ribonuclease HI family protein [Anoxybacillus flavithermus WK1]
Length = 219
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 34/146 (23%), Gaps = 23/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE---------KETTNNRMELMAAIK 58
+V AY DG G G+++ YK +
Sbjct: 73 DVIAYFDGGYDRQSKKAGIGIVIYYKQNGAQFRMRANAQLDELQSNNEAEYAAFYFLLEQ 132
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V+ D+ V S + G + E
Sbjct: 133 IEHLGVHHLPVVFRGDAHVVLHQLSNDWPVFSDEGRWVERIEQKMKKLRISPIYEP---- 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+EN + D++A A
Sbjct: 189 ----------INRKENSEADQLATQA 204
>gi|164415907|gb|AAY24625.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|15281461|gb|AAK94247.1|AF361875_2 pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 700 GGNEQIDKLVSSGIRK 715
>gi|49574369|gb|AAT66854.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|3403227|gb|AAC29060.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSRSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 648 VTDSQYALGIIQAQPDRSE-------------AELVNQIIEQLIKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|25166751|gb|AAN73547.1|AF484490_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRKI 1144
>gi|306477685|gb|ADM89217.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306477677|gb|ADM89213.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306416420|gb|ADM87057.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256011434|gb|ACU55573.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011120|gb|ACU55416.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984064|gb|ACU46104.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSESEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255984014|gb|ACU46079.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPINDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|222428434|gb|ACM50077.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRVGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVNKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|222428429|gb|ACM50073.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIQKERVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|170778865|gb|ACB36832.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLADTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|134284771|gb|ABO69465.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL A ++
Sbjct: 608 YIDGGRKKGQKAKAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKAGPEKMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH G
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPIDPLWKEIIEELQRKEAIFIDWVPGHKG 705
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 706 IPGNKEIDEL 715
>gi|148745901|emb|CAK49339.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 648 NIVTDSQYA--------LGIIQAQPDRSDSEIVNQIIEKLIQKE-----KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|119507989|dbj|BAF42389.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|86371886|gb|ABC94997.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNRGRQKIVSLTE---TTNQQTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|49472950|gb|AAT66292.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|22596379|gb|AAN03155.1|AF457068_2 pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVIDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + + KV L W+ H G
Sbjct: 648 VTDSQYALGIIQAQPDRSE-------------SELVNLIIEQLIGKDKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|49574394|gb|AAT66866.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGCVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSGSELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|88174708|gb|ABD39447.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + + + ETTN + EL A L +V +
Sbjct: 596 YVDGASNRDTKEGKAGYV---TDRGRQKAVPLTETTNQKAELHAI--QLALQDSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636393|gb|ADZ34119.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636040|gb|ADZ33817.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSMTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIGKI 716
>gi|325634990|gb|ADZ32920.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|331242858|ref|XP_003334074.1| hypothetical protein PGTG_15618 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313064|gb|EFP89655.1| hypothetical protein PGTG_15618 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 235
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 97 SDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
S++ I + ++ + Q + L W H G ENEKVD++A+ A
Sbjct: 120 SNQAIFIQIFDKLNYLISVHQASISLLWCPAHVGIPENEKVDQLAKEA 167
>gi|306477695|gb|ADM89222.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306477693|gb|ADM89221.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306477681|gb|ADM89215.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306477679|gb|ADM89214.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|306416228|gb|ADM86961.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288558526|dbj|BAI68320.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELXAIXL----ALQDSGSEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIR 308
>gi|288188515|gb|ADC42731.1| pol protein [Human immunodeficiency virus 1]
Length = 550
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 431 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 486 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 532
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 533 GGNEQVDKLVSAGIRK 548
>gi|256011634|gb|ACU55673.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGTEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|255984862|gb|ACU46503.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPIADTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984618|gb|ACU46381.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSIXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984414|gb|ACU46279.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKIISLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984074|gb|ACU46109.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAMGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|242805368|ref|XP_002484512.1| hypothetical protein TSTA_040390 [Talaromyces stipitatus ATCC
10500]
gi|218715137|gb|EED14559.1| hypothetical protein TSTA_040390 [Talaromyces stipitatus ATCC
10500]
Length = 319
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 19 GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYV 78
G G G +++ GK+KI G ++T+ IK +
Sbjct: 23 GYQGYIGAAMVIPALGKQKIECIGTEDTSTVYAAEACGIKFALQIVLWLAEESVRLIVRK 82
Query: 79 HKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDLYWIKGHAGNQENEKV 137
FS Q V D E + V++ WI GH G NE
Sbjct: 83 PVIFSDSQAVLQTLQNPRMVSGQVYIRDCVELLKECIEEGINVEIRWIPGHEGVPGNETA 142
Query: 138 DRIARNAA 145
DR A+ AA
Sbjct: 143 DRAAKRAA 150
>gi|157005054|gb|ABV00757.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKTGKAGYVTSRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSQGIR 712
>gi|157849808|gb|ABV89688.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRKKIVSLNETTNQKTELQAICI----ALQDSGPEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 694 GIGGNEQVDKLVSNGIR 710
>gi|114841752|dbj|BAF32202.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTEA---TNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|57869665|gb|AAW57705.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGVIQAQPDKSESEIVNQIIEKLIEKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSTGIRK 712
>gi|71020815|ref|XP_760638.1| hypothetical protein UM04491.1 [Ustilago maydis 521]
gi|46100140|gb|EAK85373.1| hypothetical protein UM04491.1 [Ustilago maydis 521]
Length = 747
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V + WI GH ENE+ D +A+ AA
Sbjct: 552 RVTVVWIPGHRDIPENERADTLAQGAAD 579
>gi|328834304|gb|AEB52728.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGASNRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|306477723|gb|ADM89236.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416474|gb|ADM87084.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306833458|ref|ZP_07466585.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
gi|304424228|gb|EFM27367.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
Length = 153
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 1 MDSK--HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
MDS+ H YTDG+ KEK+++ + + + A++
Sbjct: 1 MDSETHHSGNYIIYTDGSYKK---------YNIPNTKEKLLNST-GAELFSVIIALKALR 50
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ V + TD + + + + K K+ + +
Sbjct: 51 KISKDADRVTVKIMTDYQELKRFHKMLNYHGKSHYKKQKFKEKRQTFQWNWYYSNLCQVF 110
Query: 119 KVD----------LYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
++ + W +GHAG NE+ + +AR ++K
Sbjct: 111 RLYKELGKELTLEIEWCQGHAGIFWNEQANILARKLIKKSESK 153
>gi|299013631|gb|ADJ00407.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + K+ + + A++ +V +
Sbjct: 590 YVDGAASRETKLGKAGYVTDKGRKKVVSLTETTNQKTELHAIYLALQ-----DSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 645 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 692 GGNEQVDKLVSSGIRK 707
>gi|270160957|gb|ACZ63321.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289469834|gb|ADC96572.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSXXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDTSESEIVNQIIEQLIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 543 GGNEHVDKLVSAGIRK 558
>gi|255984838|gb|ACU46491.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + + + +V L W+ H G
Sbjct: 96 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEQLIXKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984578|gb|ACU46361.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGPEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984352|gb|ACU46248.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDXGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|226933770|gb|ACO91955.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R K K ++G + T + +A +V
Sbjct: 598 YVDGAANRETKLGKAGY-VTDRGKQKIITLTGTTNQKTELQAIQLAL------QDSGSEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 651 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 698 GIGGNEQVDKLVSNGIRK 715
>gi|195409370|gb|ACF95940.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELHAIYLALQ--ESGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIZKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSXGIRK 712
>gi|164688419|ref|ZP_02212447.1| hypothetical protein CLOBAR_02064 [Clostridium bartlettii DSM
16795]
gi|164602832|gb|EDQ96297.1| hypothetical protein CLOBAR_02064 [Clostridium bartlettii DSM
16795]
Length = 329
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 18/142 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK--------AL 60
+H Y DG+ + +GV+ + I GG + A +
Sbjct: 76 LHVYVDGSYNSGSRKYSYGVVAVKDNVVEYIHGGSGTNEKDNNIRQIAGELKAALEGATY 135
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
KV+++ D + + + K ++
Sbjct: 136 ALNNNHKKVVIFHDYEGICHHATGFW----------KRKDKSSQDYYENMNALMKKGIEI 185
Query: 121 DLYWIKGHAGNQENEKVDRIAR 142
+K H + NE D I +
Sbjct: 186 QFVQVKSHEEDLFNEMADTICK 207
>gi|156254367|gb|ABU62673.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETRLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKKRVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|145604679|ref|XP_367936.2| hypothetical protein MGG_13878 [Magnaporthe oryzae 70-15]
gi|145012637|gb|EDJ97291.1| hypothetical protein MGG_13878 [Magnaporthe oryzae 70-15]
Length = 420
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 198 EVRVRWCPGHQGIPGNDRADELAKAG 223
>gi|110815950|sp|Q89928|POL_HV2EH RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1464
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 1049 YTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 1103
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + K+ + W+ H G
Sbjct: 1104 IVDSQYVMGIV-------------AAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGL 1150
Query: 132 QENEKVDRIARNAAVSF 148
N++VD +
Sbjct: 1151 GGNQEVDHLVSQGIRQI 1167
>gi|5733955|gb|AAD49792.1|AF107771_5 Pol polyprotein [Human immunodeficiency virus 1]
Length = 958
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 590 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 643 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|89894536|ref|YP_518023.1| hypothetical protein DSY1790 [Desulfitobacterium hafniense Y51]
gi|219668968|ref|YP_002459403.1| ribonuclease H-related protein [Desulfitobacterium hafniense DCB-2]
gi|89333984|dbj|BAE83579.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539228|gb|ACL20967.1| ribonuclease H-related protein [Desulfitobacterium hafniense DCB-2]
Length = 206
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 18/139 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET-----TNNRMELMAAIKALTALKY 65
YTDG+ G W GK + N +AA
Sbjct: 76 VYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKAS 133
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V + Y F + +N + + K + +
Sbjct: 134 QLGVKIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIY-----------SFEKV 182
Query: 126 KGHAGNQENEKVDRIARNA 144
K H+GN+ N+ VD A++A
Sbjct: 183 KAHSGNEFNDYVDMKAKSA 201
>gi|995586|gb|AAC54467.1| reverse transcriptase [Human immunodeficiency virus 2]
gi|1583078|prf||2120212B pol gene
Length = 1055
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 640 YTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 694
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + K+ + W+ H G
Sbjct: 695 IVDSQYVMGIV-------------AAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGL 741
Query: 132 QENEKVDRIARNAAVSF 148
N++VD +
Sbjct: 742 GGNQEVDHLVSQGIRQI 758
>gi|327458187|gb|AEA76533.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325634958|gb|ADZ32892.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|319444194|gb|ADV58205.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|306477747|gb|ADM89248.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + G++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGGQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289469782|gb|ADC96546.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188507|gb|ADC42727.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|283444910|gb|ADB20374.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTNRGRQKIVTLNETTNQKAELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|256011744|gb|ACU55728.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256011614|gb|ACU55663.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011574|gb|ACU55643.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXRETKLGKAGYVXDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRKI 714
>gi|256010935|gb|ACU55324.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|256010689|gb|ACU55201.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984400|gb|ACU46272.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVXPJTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|222428554|gb|ACM50173.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQRVISITDTTNQKTELQAINLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|212382739|gb|ACJ25679.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDKGRQKTVTLSETTNQKTELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|4324783|gb|AAD17047.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S E ++ + +V
Sbjct: 1020 YVDGAANRETKLGKAGY---VTDKGRQKIVSLNETTNQKAELQAIQL----ALQDSGSEV 1072
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 1073 NIVTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKERVYLSWVPAHK 1119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1120 GIGGNEQVDKLVSSGIRK 1137
>gi|13095307|gb|AAK12219.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VDR+
Sbjct: 543 GIGGNEQVDRLVSAGIRK 560
>gi|49574240|gb|AAT66793.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 543 GGNEQADKLVSAGIRK 558
>gi|82571231|gb|ABB84006.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ KV +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELQAIKLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|327458203|gb|AEA76541.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|307568157|pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
gi|307568159|pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
gi|307568161|pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
gi|307568163|pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
gi|307568189|pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
gi|307568193|pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
gi|307568203|pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|288187776|gb|ADC42377.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|260100193|pdb|3JSM|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
gi|260656439|pdb|3JYT|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011518|gb|ACU55615.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 558 YVDGAASRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 613 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 660 GGNEQVDKLVSNGIRK 675
>gi|256011442|gb|ACU55577.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 950
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRDTRLGKAGYVTDRGRQKVVHLTDTTNQKTELQAINLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIR 713
>gi|222428642|gb|ACM50243.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|189201878|ref|XP_001937275.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984374|gb|EDU49862.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 161
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W GH + NEK D +A+ AA
Sbjct: 21 IHLQWAPGHNDVKGNEKADTLAKEAAKE 48
>gi|157005131|gb|ABV00826.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|119507431|dbj|BAF42643.1| Pol [Human immunodeficiency virus 1]
Length = 1010
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|49472941|gb|AAT66284.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANREAKVGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYV-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|38679150|gb|AAR26403.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|1065287|pdb|1HNI|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
gi|1065293|pdb|1HNV|A Chain A, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
gi|1942046|pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
gi|3891818|pdb|2HMI|A Chain A, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|2194007|pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|5822251|pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
gi|21730354|pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|28373910|pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
gi|28373921|pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
gi|49259184|pdb|1T03|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
gi|49259190|pdb|1T05|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
gi|51247268|pdb|1R0A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-Primer Solved To 2.8
Angstroms
Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325634667|gb|ADZ32638.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIDQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|302594684|gb|ADL59530.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIRK 118
>gi|288188501|gb|ADC42724.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|282598006|gb|ADA83254.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQRVVTITETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYVLGIIQAQPDRSE-------------SELVNQIVEELIKKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011362|gb|ACU55537.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSDSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984104|gb|ACU46124.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSKVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984100|gb|ACU46122.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSKVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984048|gb|ACU46096.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQY-------------XLGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRXI 658
>gi|238733862|gb|ACR55135.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428350|gb|ACM50010.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYMAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRKI 713
>gi|212382802|gb|ACJ25708.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVISLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNEIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|113201818|gb|ABI33134.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+KIIS E ++ + +V
Sbjct: 602 YVDGAANRETKLGKAGY---VTDRGKQKIISLTETTNQKTELQAIQL----ALQDSGSEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 655 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 702 GIGGNEQVDKLVSNGIR 718
>gi|86560175|gb|ABD04236.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|93210814|gb|ABF00777.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + + + A++ +V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTDRGRQRVVSLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|57869580|gb|AAW57629.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYV-------------LGIIQATPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|37682520|gb|AAQ98208.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAICL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSELEIVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37677835|gb|AAQ97507.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVPLNDTTNQKTELQAIXLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37221228|gb|AAQ89745.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221244|gb|AAQ89753.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221230|gb|AAQ89746.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221224|gb|AAQ89743.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221226|gb|AAQ89744.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|17046919|gb|AAL34919.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 700 GGNEQIDKLVSSGIRK 715
>gi|13940448|gb|AAK50381.1|U43202_2 pol precursor protein [Murine leukemia virus]
Length = 1196
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y+DG+ G V E I + T+ + + A+ + ++
Sbjct: 642 YSDGSSFLQEGQRKAGAAV---TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRL 698
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 699 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 758
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA+
Sbjct: 759 QKGDSAEARGNRLADQAAREAAIK 782
>gi|56609252|gb|AAW03212.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K++S E T N+ + AI P +V +
Sbjct: 596 YVDGAANRETKRGKAG-YITDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + + +V L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIGKD-----RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|224418|prf||1103299E pol gene
Length = 1012
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 605 YVDGAANRETRLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 660 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 707 GGNEQVDKLVSAGIRKI 723
>gi|327458309|gb|AEA76594.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325638486|gb|ADZ35888.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|325635351|gb|ADZ33223.1| pol protein [Human immunodeficiency virus 1]
gi|325635383|gb|ADZ33251.1| pol protein [Human immunodeficiency virus 1]
gi|325635407|gb|ADZ33272.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|306477475|gb|ADM89112.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|288899124|gb|ADC67094.1| pol protein [Human immunodeficiency virus 1]
Length = 995
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 588 YVDGAANRESKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 643 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKERVYLAWVPAHKGI 689
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 690 GGNEQVDKLVSAGIRKI 706
>gi|288187620|gb|ADC42303.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYITNTGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011760|gb|ACU55736.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQXIKKEKVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 705 GGNEQVDKLVSNGIRK 720
>gi|255984828|gb|ACU46486.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984628|gb|ACU46386.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 143 GGNEKVDKLVSSGIRK 158
>gi|255984424|gb|ACU46284.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984260|gb|ACU46202.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984160|gb|ACU46152.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSXXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|212382629|gb|ACJ25632.1| pol protein [Human immunodeficiency virus 1]
Length = 761
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S E ++ + +V
Sbjct: 441 YVDGAANRDTKLGKAGY---ITDRGRQKVVSLSETTNQKTELQAIQL----ALQDSGPEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|194399979|gb|ACF60946.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + G++ I + A++ +V +
Sbjct: 595 YVDGAAHRETKLGKAGYVTDKGGQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLVQKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|158967329|gb|ABW86680.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|117581764|gb|ABK41299.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHKGV 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|38491678|gb|AAR22069.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESEAVNQIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|29409308|gb|AAM67387.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIGKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|17046803|gb|AAL34815.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S TTN + EL A L +V +
Sbjct: 590 YVDGAANRET-KMGKAGYVTDRGRQKVVS--LTGTTNQKTELQAI--QLALQDSGSEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 692 GGNEQVDKLVSSGIRK 707
>gi|327458329|gb|AEA76604.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458327|gb|AEA76603.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325635415|gb|ADZ33279.1| pol protein [Human immunodeficiency virus 1]
Length = 927
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|325635399|gb|ADZ33265.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|313117114|ref|YP_004038238.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
gi|312295066|gb|ADQ69102.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
Length = 218
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG GNPGP G G ++ + ++ +R A L +
Sbjct: 82 ILYVDGGSRGNPGPAGAGAVIMDATETELA--RLGRPVGSRTGNNTAEYVALQLGLSELL 139
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y S + S + + + ++ + + + +H+ H
Sbjct: 140 ARYDPRSLEVRIDSMTVIRDAWDDDDPTEPGVETYSEAIATALLSVPEHRYT------HL 193
Query: 130 GNQENEKVDRIARNAAV 146
+ + D +A A
Sbjct: 194 ADSDPNPADALATVGAD 210
>gi|289187408|gb|ADC92281.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187143|gb|ADC92151.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187115|gb|ADC92137.1| pol protein [Human immunodeficiency virus 1]
gi|289187119|gb|ADC92139.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187113|gb|ADC92136.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187010|gb|ADC92085.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186988|gb|ADC92074.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186976|gb|ADC92068.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186972|gb|ADC92066.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289186944|gb|ADC92052.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187941|gb|ADC42457.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187826|gb|ADC42400.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|256011102|gb|ACU55407.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010795|gb|ACU55254.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTNRGRQKVVSLPDTTNQKTELHAIXLALQ-----DSGSEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSAGIRK 721
>gi|256010757|gb|ACU55235.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVIXLSDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 698 GGNEKVDKLVSSGIRK 713
>gi|255984658|gb|ACU46401.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKTGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984560|gb|ACU46352.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKXXPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + E KV L W+ H G
Sbjct: 96 VTDSQYA--------LGIIQAQPDKSDSELVNQIIEQLIKKE-----KVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984528|gb|ACU46336.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984340|gb|ACU46242.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984516|gb|ACU46330.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984286|gb|ACU46215.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984174|gb|ACU46159.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984170|gb|ACU46157.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984076|gb|ACU46110.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256252324|dbj|BAH97362.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQ--ESGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|222428588|gb|ACM50200.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + ++ ++ +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKIVSLNDTTNQKTELQAISL----ALQDSEMEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|167833588|gb|ACA02496.1| pol protein [Human immunodeficiency virus 1]
Length = 770
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|114430883|dbj|BAF31676.1| Pol [Human immunodeficiency virus 1]
gi|114430893|dbj|BAF31685.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37725236|gb|AAR02300.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|37725245|gb|AAR02308.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|37725206|gb|AAR02273.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|15281471|gb|AAK94256.1|AF361876_2 pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQRIISLTETTNQKTELQAIQLALQ-----DSGPEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|22596455|gb|AAN03221.1|AF457078_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLNE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIRKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095166|gb|AAK12164.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 496 NIVTDSQYA-------------LGIIQAKPDQSESELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|7452900|emb|CAB86366.1| POL protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++ ++S E TTN + EL A + AL + +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQNVVSLTE--TTNQKTELHAILLALQ--ESGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRK 713
>gi|13891908|gb|AAG50333.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891910|gb|AAG50334.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891904|gb|AAG50331.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13891920|gb|AAG50339.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|74315780|gb|ABA02502.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDKGKQKVITIQETTNQKTELHAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGVRK 716
>gi|327458205|gb|AEA76542.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|312601982|gb|ADQ92547.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLMDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478289|gb|ADM89519.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKXEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011044|gb|ACU55378.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + K+TTN R EL A AL +V +
Sbjct: 596 YVDGAAXRXTKLGXAGYVTDRGRQKVVP---LKDTTNQRTELQAIHLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984856|gb|ACU46500.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQXTELQAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++
Sbjct: 141 GIGGNEKVDKLVSAGIRK 158
>gi|255984814|gb|ACU46479.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 XTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRKI 159
>gi|255984706|gb|ACU46425.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + +TTN R EL A AL +V +
Sbjct: 41 YVDGAANRETKLGKAGYV---TDRGRQKAVPLTDTTNQRTELQAIYLALQDSGL--EVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984486|gb|ACU46315.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984218|gb|ACU46181.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984088|gb|ACU46116.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGPEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|226348566|gb|ACO50602.1| pol protein [Human immunodeficiency virus 1]
Length = 321
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 22 YVDGASNRETKLGKAGYVTDRGRQKVVSLSEITNQKTELHAIYLALQ-----DSGSEVNI 76
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 77 VTDSQYALGIIQAQPDRSESELVNLIIEKLIGKD-------------KVYLSWVPAHKGI 123
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 124 GGNEQVDKLVSNGIRKI 140
>gi|224059498|ref|XP_002299876.1| predicted protein [Populus trichocarpa]
gi|222847134|gb|EEE84681.1| predicted protein [Populus trichocarpa]
Length = 1221
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 14/137 (10%)
Query: 13 TDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ G PG G G +LR + I S +N EL A +KA+ +
Sbjct: 1089 VDGSSLGKPGLSGIGGVLRNHHGHLLGIFSLPVGILDSNIAELRAVVKAVELSASNRLLH 1148
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGHA 129
++ + + + +L+ + + H
Sbjct: 1149 ----HKHITIESDSTNVISWMHNPHN---RPWMHWELFSTVQRLTRFFGSITF----AHV 1197
Query: 130 GNQENEKVDRIARNAAV 146
+ N D +A+
Sbjct: 1198 YRESNNMADCMAKQGVR 1214
>gi|158931138|sp|P05896|POL_SIVM1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1448
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+CS G G+ + +GK+K+ ++TTN + EL A + ALT +
Sbjct: 1036 YVDGSCSKQSKEGKAGY---ITDRGKDKV--KVLEQTTNQQAELEAFLMALTDSGPKANI 1090
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS YV + + + + + E + ++ + W+ H
Sbjct: 1091 IV--DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKTEIYVAWVPAHK 1135
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 1136 GIGGNQEIDHLVSQGIRQ 1153
>gi|119507979|dbj|BAF42380.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|39777375|gb|AAR30957.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|37725256|gb|AAR02318.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|37221292|gb|AAQ89777.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221496|gb|AAQ89876.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221288|gb|AAQ89775.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221290|gb|AAQ89776.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|33331466|gb|AAQ10911.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|49574363|gb|AAT66851.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|49574361|gb|AAT66850.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|49574371|gb|AAT66855.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|74315733|gb|ABA02460.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K+I+ E + + +V
Sbjct: 593 YVDGAANRETKLGKAGY---ITDKGKQKVITIQETTNQKTELHAIXL----ALKDSGSEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDKIYLTWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 693 GIGGNEQVDKLVSNGIRK 710
>gi|256011030|gb|ACU55371.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRDTRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGAEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQATPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIRK 717
>gi|255984502|gb|ACU46323.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|50404186|gb|AAT76856.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|46946860|gb|AAT06648.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELYAIHLALQ-----DSGSTVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|38491596|gb|AAR21996.1| pol protein [Human immunodeficiency virus 1]
gi|282597997|gb|ADA83246.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37725194|gb|AAR02262.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|37221475|gb|AAQ89866.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221477|gb|AAQ89867.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221252|gb|AAQ89757.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVFLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|49574367|gb|AAT66853.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|24754005|gb|AAN64123.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|88174668|gb|ABD39411.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSKGIR 715
>gi|74315750|gb|ABA02475.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKVITIQETTNQKTELHAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLTWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|297186126|gb|ADI24349.1| pol protein [Simian immunodeficiency virus]
Length = 1015
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + ++TTN + EL A AL +++
Sbjct: 603 YVDGSCNRQSKEGKAGYVTDRGRDRT---KPLEQTTNQQAELEAFYLALADSGPKANIIV 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 660 --DSQYVMGIIAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 705 GGNQEVDHLVSQGIRQ 720
>gi|256011752|gb|ACU55732.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKIVSLTNTTNQKTELQAIQLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256011004|gb|ACU55358.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVXQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428296|gb|ACM49967.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKIVSIPDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|212674658|gb|ACJ37080.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYT-------------LGIIQAQPDKSESELVSQIIEKLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382691|gb|ACJ25658.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E ++ + +V +
Sbjct: 591 YVDGASNRETKI-GRAGYVTDRGRQKIVSLTETTNQKAELQAIQL----ALQDSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGT 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 693 GGNEQVDKLVSRGIRK 708
>gi|170778933|gb|ACB36866.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSXSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|122913067|gb|ABM68063.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETRNGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ-----DSESEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEMVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSDGIRK 657
>gi|84310426|gb|ABC55368.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|114794305|pdb|2HB5|A Chain A, Crystal Structure Of The Moloney Murine Leukemia Virus
Rnase H Domain
Length = 164
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 12/137 (8%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V E I + T+ + + A+ K+
Sbjct: 26 YTDGSSLLQEGQRKAGAAV---TTETEVIWAKALPAGTSAQRAELIALTQALKXAEGKKL 82
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+YTDS Y + + K L F+ KGH+
Sbjct: 83 NVYTDSRYAFATAHLTSEGKEI------KNKDEILALLKALFLPKRLSIIHCPGHQKGHS 136
Query: 130 GN-QENEKVDRIARNAA 145
+ N D+ AR AA
Sbjct: 137 AEARGNRXADQAARKAA 153
>gi|37934312|gb|AAO84274.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 578
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVTLDDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|37677895|gb|AAQ97561.1| Gag protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIRLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37221308|gb|AAQ89785.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221328|gb|AAQ89794.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221332|gb|AAQ89796.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|22596420|gb|AAN03191.1|AF457073_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|22596555|gb|AAN03311.1|AF457088_2 pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN R EL A AL +V
Sbjct: 591 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQRTELHAIYLALQDSG--SEV 643
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 644 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 691 GIGGNEQVDKLVSSGIRK 708
>gi|68521975|gb|AAY98578.1| pol protein [Human immunodeficiency virus 1]
gi|212383356|gb|ACJ25956.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI+ +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKAELIAIRLALQDSGL-EV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|62361770|gb|AAX81418.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ ++ +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKIITLTETTNQKAELQAIQLALQ-----DSGSEINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|327458351|gb|AEA76615.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|326370611|gb|ADZ56396.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636001|gb|ADZ33783.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDRVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|270485068|gb|ACZ82311.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVPLTETTNQKAELQAVQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSMYV-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|289187319|gb|ADC92238.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNRGRQKVVTITDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188509|gb|ADC42728.1| pol protein [Human immunodeficiency virus 1]
Length = 551
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 432 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 486
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 487 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 533
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 534 GGNEQVDKLVSAGIRK 549
>gi|260533773|gb|ACX45168.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVISIADTTNQKTELQAINLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + KV L W+ H G
Sbjct: 648 VTDSQYAIGII-------------QATPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|260533625|gb|ACX45035.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELHAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSDSELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011674|gb|ACU55693.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|256011382|gb|ACU55547.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K +S T N+ + AI +V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKXVS---LNDTTNQKTELQAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011082|gb|ACU55397.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRZKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|256010960|gb|ACU55336.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTDKGRQKVISIADTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|229661950|gb|ACQ84401.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLISKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428335|gb|ACM49998.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|194399909|gb|ACF60883.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 595 YVDGAASRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|32189800|gb|AAP75711.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI P +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKAVSLTE---TTNQKTELHAIHLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIQKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|210721|gb|AAA42767.1| pol protein [Bovine immunodeficiency virus R29]
Length = 1053
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G V + + G + + MA + + +
Sbjct: 584 YTDG---GKKGKTAAAVYWCEGRTKSKVFPGTNQQAELKAICMALLDGPPKMN------I 634
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++G + + W + G K + V + W+ H G
Sbjct: 635 ITDSRYAYEGMREEPETWAREGIWLEIAKILPFKQY------------VGIGWVPAHKGI 682
Query: 132 QENEKVDRIARNA 144
N + D + A
Sbjct: 683 GGNTEADEGVKKA 695
>gi|77416876|sp|P03366|POL_HV1B1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1447
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1040 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 1094
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1095 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1141
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1142 GGNEQVDKLVSAGIRKI 1158
>gi|5931492|dbj|BAA84669.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQLIEELIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|325635274|gb|ADZ33159.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|304347439|gb|ADM25282.1| pol protein [Human immunodeficiency virus 1]
Length = 542
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 423 YVDGAANRESKLGKAGYVTDRGXQKXVSLXDTTNQKTELXAIXLALQ-----DSGLEVNI 477
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 478 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 524
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 525 GGNEQVDKLVSNGIRK 540
>gi|256011582|gb|ACU55647.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011472|gb|ACU55592.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAVXLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYT-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011430|gb|ACU55571.1| pol protein [Human immunodeficiency virus 1]
Length = 841
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 434 YVDGAANRETKSGKAGYVTDRGRQKVVPLIDTTNQKTELQAIYLALQ-----DSGLEVNI 488
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 489 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 535
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 536 GGNEQVDKLVSAGIRK 551
>gi|256011356|gb|ACU55534.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + NR T + +
Sbjct: 596 YVDGASNRETKAGKAGYV------------------TNRGRQKVVSLTDTTNQKTELHAI 637
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
Y + G + ++ + + + KV L W+ H G
Sbjct: 638 YLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984944|gb|ACU46544.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTNXGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255983928|gb|ACU46036.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|238734086|gb|ACR55332.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|150400359|ref|YP_001324126.1| ribonuclease H [Methanococcus vannielii SB]
gi|150013062|gb|ABR55514.1| ribonuclease H [Methanococcus vannielii SB]
Length = 209
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 8/142 (5%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKG--KEKIISGGEKETTNNRMELMAAIKALT 61
+ L +HA+ DG+ + G G GV + + E G + R + A
Sbjct: 71 EDLDTMHAFVDGSFNLKTGFYGAGVYIIHNDLKTEIKQKGNNPAFSKMRNVAGEILAAEL 130
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A+K+ + Y + + K + ++E S + +
Sbjct: 131 AIKHASSKNVKNLIIYYDYFGIEKWCTGEW------KTKMLGTAKYREIYLEHSVKINIK 184
Query: 122 LYWIKGHAGNQENEKVDRIARN 143
IK H+ + NE DR+A+
Sbjct: 185 FIKIKAHSKEKNNEIADRLAKE 206
>gi|114431156|dbj|BAF31406.1| Pol [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELYAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|87245378|gb|ABD34869.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTBKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEELVRKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|37677775|gb|AAQ97453.1| Pol protein [Human immunodeficiency virus 1]
gi|37681532|gb|AAQ97642.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQALPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|37496499|emb|CAD48455.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1493
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1086 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1138
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1139 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 1185
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1186 GIGGNEQVDKLVSSGIRK 1203
>gi|25807936|gb|AAN74523.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQRVVSLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|17902149|gb|AAL47812.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+KII+ E TTN + EL A L +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDKGKQKIITLTE--TTNQKAELKAV--QLALQDSGSEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|49574405|gb|AAT66870.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + NR T + +
Sbjct: 441 YVDGAANRETKIGKAGYV------------------TNRGRQKVVSLTDTTNQKTELQAI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ + G + ++ + E + KV L W+ H G
Sbjct: 483 HLALQDSGLEVNIVTGSQYALGIIQAQPDKSESEVVSPIIEELLKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ R
Sbjct: 543 GGNEQVDKLVRTGIRK 558
>gi|78172832|gb|ABB29365.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|6016889|dbj|BAA85226.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|327458227|gb|AEA76553.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAILLALQ-----DAGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|326416914|gb|ADZ73310.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416902|gb|ADZ73304.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416896|gb|ADZ73301.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416878|gb|ADZ73292.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416866|gb|ADZ73286.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|325635832|gb|ADZ33636.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDRVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|304347453|gb|ADM25289.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLRDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|295398036|ref|ZP_06808092.1| ribonuclease HI [Aerococcus viridans ATCC 11563]
gi|294973794|gb|EFG49565.1| ribonuclease HI [Aerococcus viridans ATCC 11563]
Length = 139
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 10/142 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ DG+ G GP G G+++ + G+++ EK + M+ A L
Sbjct: 2 LKIAIDGSVDGQFGPAGVGMVIIHDGQQR----QEKYPLSGEMDNHEAEFHALLLLLEKL 57
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+S ++ I N + + ++ +
Sbjct: 58 QAEGLESEWILCQTDSKIVFDAVNKRFHKRDPYKSLLKAILNQLDHFPMFNLKW------ 111
Query: 129 AGNQENEKVDRIARNAAVSFKN 150
+Q N D +AR A K
Sbjct: 112 VPDQANRGADNLARQAMHQAKK 133
>gi|289187195|gb|ADC92177.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE VD++ +
Sbjct: 642 GGNEHVDKLVSSGIRK 657
>gi|288899126|gb|ADC67095.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|288558513|dbj|BAI68314.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 247 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIRK 309
>gi|260533783|gb|ACX45177.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVISIADTTNQKTELQAINLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + KV L W+ H G
Sbjct: 648 VTDSQYAIGII-------------QATPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 695 GGNEQVDKLVSNGIRK 710
>gi|256011318|gb|ACU55515.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSAGIRK 719
>gi|256010719|gb|ACU55216.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984860|gb|ACU46502.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVIPINDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984634|gb|ACU46389.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKXGXAGYVTNXGRQKVXSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984626|gb|ACU46385.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 94 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIXKEKVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|255984416|gb|ACU46280.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|125661226|gb|ABN49569.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63014458|gb|AAY25631.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37677905|gb|AAQ97570.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGXQKVVSLPDTTNQKTELQAIRLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|30027255|gb|AAP06258.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|14091490|gb|AAK53764.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|13891892|gb|AAG50325.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETRVGKAGYVTDRGRQKAISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRKI 559
>gi|16118262|gb|AAL12641.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|54025951|ref|YP_120193.1| hypothetical protein nfa39810 [Nocardia farcinica IFM 10152]
gi|54017459|dbj|BAD58829.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 216
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 14/153 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMEL--------MAAIKA 59
+ TD + G GG+G R + + + A+
Sbjct: 32 RLIVATDASYKH--GIGGFGYFTRNGHWGLATRHSGRGRLAAIRDHGTGSLVNEIRAVGL 89
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH- 118
+ + DS+ W + + D V + Q
Sbjct: 90 VIEHFPGRAIKFLIDSTAAIDHLHSWQAGHTDRMPRGYSLRPRVRGDATPALVRYAHQIA 149
Query: 119 ---KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + GH+G+ NE D +A A +
Sbjct: 150 GRTDLKFVHVAGHSGHLMNEAADTLATIARTAL 182
>gi|326370874|gb|ADZ56626.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQEQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638371|gb|ADZ35791.1| pol protein [Human immunodeficiency virus 1]
gi|325638376|gb|ADZ35795.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|325636072|gb|ADZ33845.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDRVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|325635963|gb|ADZ33750.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDRVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|306477995|gb|ADM89372.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477729|gb|ADM89239.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477725|gb|ADM89237.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|259122682|gb|ACV92647.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLVGKDKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 694 GIGGNEQVDKLVSNGIRKI 712
>gi|289064964|gb|ADC80721.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|257471301|ref|ZP_05635300.1| ribonuclease H [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|311086560|gb|ADP66641.1| ribonuclease H [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087141|gb|ADP67221.1| ribonuclease H [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|311087675|gb|ADP67754.1| ribonuclease H [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 72
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
H V +W+K H G+ ENE+ D IAR +A +
Sbjct: 30 HLVTWFWVKAHIGHLENERCDMIARQSAKN 59
>gi|256011498|gb|ACU55605.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010735|gb|ACU55224.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTSKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|255984134|gb|ACU46139.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHJALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|224986263|gb|ACN74833.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVRK 713
>gi|156254347|gb|ABU62663.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|119507228|dbj|BAF42470.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|59003509|gb|AAW83520.1| pol protein [Human immunodeficiency virus 1]
gi|212383134|gb|ACJ25864.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKIGKAGYVTDKGRQKIVTLNETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKEI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|46946836|gb|AAT06627.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI KV
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SKV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|38892699|gb|AAR27698.1| pol protein [Human immunodeficiency virus 1]
gi|212382633|gb|ACJ25634.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKMGKAGYVTDRGRQKIVPLSETTNQKTELHAIQLALQ-----DSGSEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 708 GGNEQVDKLVSSGIRK 723
>gi|37221469|gb|AAQ89863.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSIXDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221440|gb|AAQ89849.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221436|gb|AAQ89847.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221438|gb|AAQ89848.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221272|gb|AAQ89767.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSFGIRK 657
>gi|13095069|gb|AAK12125.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVHLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|896051|gb|AAC55945.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|326370647|gb|ADZ56427.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 699 GGNEQVDKLVSNGIRK 714
>gi|312602037|gb|ADQ92572.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAMGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306478267|gb|ADM89508.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477727|gb|ADM89238.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477481|gb|ADM89115.1| pol protein [Human immunodeficiency virus 1]
gi|306477719|gb|ADM89234.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477447|gb|ADM89098.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKGKIYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSTGIRK 558
>gi|302393244|dbj|BAJ14327.1| pol protein [Simian immunodeficiency virus]
Length = 454
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A + ALT +++
Sbjct: 271 YTDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALTDSGPKANIIV 327
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 328 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHKGI 372
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 373 GGNQEIDHLVSQGIRQ 388
>gi|256010729|gb|ACU55221.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIXLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|255984952|gb|ACU46548.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKXXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984372|gb|ACU46258.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984066|gb|ACU46105.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANREXKIGXAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|255983962|gb|ACU46053.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDXGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256252527|dbj|BAH97641.1| Pol [Human immunodeficiency virus 1]
gi|256252537|dbj|BAH97650.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVITLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|242276526|gb|ACS91503.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRENKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQIALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 704 GGNKQVDKLVSAGIRK 719
>gi|222428301|gb|ACM49971.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|110815948|sp|Q9Q720|POL_HV1V9 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +GK+KI+S E ++ + + +V +
Sbjct: 1029 YVDGAANRET-KMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQESGP----EVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K L W+ H G
Sbjct: 1084 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKFYLSWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1131 GGNEQVDKLVSSGIRK 1146
>gi|37221330|gb|AAQ89795.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|11385951|gb|AAG35039.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + ETTN + EL A L +V +
Sbjct: 540 YVDGAFNRETKKGKAGYV---TDRGRQKAVSLTETTNQKAELHAI--RLALQDSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 ITDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGISK 657
>gi|818216|gb|AAB47928.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|68522045|gb|AAY98641.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDKGRQKIVTLTETTNQKAELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 ITDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|7959193|dbj|BAA95990.1| KIAA1466 protein [Homo sapiens]
Length = 505
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 52 ELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
+ A+ + V +YTDS Y +++ G T+ K +K L +
Sbjct: 50 KSRIALNRALLVAKGRTVNIYTDSKYAFATLHAHGAIYKERGLLTAGGKEIKEEILQLLE 109
Query: 112 VEASAQHKVDLYWIKGHAGN-----QENEKVDRIARNAAVS 147
A KV + KGH + N K DR AR AA+S
Sbjct: 110 -AVWAPDKVAVIHCKGHQTRGGIEAKGNRKADREARQAAMS 149
>gi|51094817|gb|EAL24063.1| KIAA1466 protein [Homo sapiens]
Length = 477
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 52 ELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKF 111
+ A+ + V +YTDS Y +++ G T+ K +K L +
Sbjct: 22 KSRIALNRALLVAKGRTVNIYTDSKYAFATLHAHGAIYKERGLLTAGGKEIKEEILQLLE 81
Query: 112 VEASAQHKVDLYWIKGHAGN-----QENEKVDRIARNAAVS 147
A KV + KGH + N K DR AR AA+S
Sbjct: 82 -AVWAPDKVAVIHCKGHQTRGGIEAKGNRKADREARQAAMS 121
>gi|327458371|gb|AEA76625.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVS---IPDTTNQKTELQAILLALQDSGI--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|327458189|gb|AEA76534.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|302594700|gb|ADL59538.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQSQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIR 117
>gi|289469896|gb|ADC96603.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289187374|gb|ADC92265.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187549|gb|ADC42269.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|224925783|gb|ACN69506.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVITLTETTNQKTELHAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLTWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|261330873|emb|CBH13858.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 523
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 41/137 (29%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+TDG+ S G +L R G E + + A++
Sbjct: 209 ELWTDGSVSLGEMCGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLP 268
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ S + + + + + ++ L ++ GH
Sbjct: 269 AYRSTPSRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKVRIRLQFVFGHC 328
Query: 130 GNQENEKVDRIARNAAV 146
G + NE D +A+ AA
Sbjct: 329 GVKRNEVCDEMAKKAAD 345
>gi|256011300|gb|ACU55506.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNXGRQKVVXLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|256011128|gb|ACU55420.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E +V L W+ H G
Sbjct: 651 VTDSQYAIGI--------IQAQPDTSESELVNQIIEQLINKE-----RVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984282|gb|ACU46213.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBRGRQKVVPJTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984168|gb|ACU46156.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|255983936|gb|ACU46040.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|224986243|gb|ACN74815.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSTGIRK 712
>gi|242763273|ref|XP_002340543.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218723739|gb|EED23156.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 241
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + W+ GH ENE D A+ A S
Sbjct: 45 WPLRERLPHTKSGSVQIRWVPGHTKIPENEAADSAAKEGAAS 86
>gi|242825154|ref|XP_002488382.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712200|gb|EED11626.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 664
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + W+ GH ENE D A+ A S
Sbjct: 468 WPLRERLPHTKSGSVQIRWVPGHTKIPENEAADSAAKEGAAS 509
>gi|192335078|gb|ACF04063.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|170778917|gb|ACB36858.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|158967359|gb|ABW86707.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|158967339|gb|ABW86689.1| pol protein [Human immunodeficiency virus 1]
gi|158967418|gb|ABW86760.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + + KV L W+ H
Sbjct: 649 NIVTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIGKD-----KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|63014448|gb|AAY25622.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|38491926|gb|AAR22290.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|306416334|gb|ADM87014.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIR 557
>gi|263200911|gb|ACY70019.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDKGKQKVITLTETTNQKAELQAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|283444927|gb|ADB20389.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKSGKAGYVTDKGRQKIISLTETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGA 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|255984764|gb|ACU46454.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBRGRQKVIPLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984490|gb|ACU46317.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAILLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984040|gb|ACU46092.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTBRGRQKVIPLTDTTNQQTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|238733818|gb|ACR55096.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLNE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|157273993|gb|ABV28266.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGSANRDTKEGKAGYVTDRGRQKVVPLVDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|148469917|gb|ABQ65904.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|84310436|gb|ABC55377.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSEP-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|93210953|gb|ABF00902.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K+++ E ++ + +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDKGKQKVVTLTETTNQKTELQAIQI----ALQDSGPEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + +V L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRK 719
>gi|38491936|gb|AAR22299.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEHLIQKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|37221238|gb|AAQ89750.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221522|gb|AAQ89889.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANKDTKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221274|gb|AAQ89768.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221336|gb|AAQ89798.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESEXVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221270|gb|AAQ89766.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|24753995|gb|AAN64114.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVLLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|85700475|gb|ABC74596.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 601 YVDGAANRETKLGKAGY---VTDRGRQKIVSLNETTNQKAELQAIQL----ALQDSGSEV 653
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + + K+ L W+ H
Sbjct: 654 NIVTDSQYA-------------LGIIQAQPDKSESELVNLIIEQLINKEKIYLSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|306478227|gb|ADM89488.1| pol protein [Human immunodeficiency virus 1]
Length = 800
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 393 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 447
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 448 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 494
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 495 GGNEQVDRLVSTGIRK 510
>gi|289469780|gb|ADC96545.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188542|gb|ADC42744.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|256011624|gb|ACU55668.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R + T +
Sbjct: 602 YVDGAANRETKLGKAGY--------------------VTDRGKQKVVSLTDTTNQKTELQ 641
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + K+ L W+ H
Sbjct: 642 AIYLALQDSGLEVNXVTDSQYALGIIXAQPDKSESELVNQIIEELIKKEKIYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSAGIRK 719
>gi|256011236|gb|ACU55474.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|256011074|gb|ACU55393.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 600 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKSELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ N
Sbjct: 702 GGNEKVDKLVSNGIRK 717
>gi|256011002|gb|ACU55357.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGKQKXVSLTD---TTNQKTELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|255984912|gb|ACU46528.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLXKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGVRK 158
>gi|255984696|gb|ACU46420.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 143 GGNEQVDRLVSAGIRK 158
>gi|255984620|gb|ACU46382.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 143 GGNEKVDKLVSXGIRK 158
>gi|255984570|gb|ACU46357.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984194|gb|ACU46169.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAHRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 642 GGNEKVDKLVSAGIRK 657
>gi|255984172|gb|ACU46158.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVSIXDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|242810776|ref|XP_002485651.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218716276|gb|EED15698.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + W+ GHA ENE D A+ A S
Sbjct: 410 IQIRWVPGHAKIPENEAADLAAKEGAASI 438
>gi|157005064|gb|ABV00766.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|156052939|ref|XP_001592396.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980]
gi|154704415|gb|EDO04154.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1249
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I + E++ I +
Sbjct: 107 NTITIYTDASST-----------LEGIGVGIGIVVILPNGRISHQEIIN-IGVNQLVYNG 154
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 155 ELLGVTKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNK 214
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 215 GAEISLNWVPGHTSVQGNELADSLAKEA 242
>gi|112351519|gb|ABI15304.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|93210636|gb|ABF00617.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 603 YVDGAASRETKMGKAGYVTDKGRQKIVHLTETTNQKTELQAIQLALQ-----DSGPEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIGKERVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 705 GGNEQIDKLVSSGIRK 720
>gi|37221402|gb|AAQ89830.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|37221346|gb|AAQ89802.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|15982647|gb|AAL09935.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|896055|gb|AAA93163.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|25167031|gb|AAN73799.1|AF484518_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1428
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + KG++K+IS + ++ + +V +
Sbjct: 1021 YVDGASNKETKIGKAG-YITDKGRQKVISLTDTTNQKTELQAINL----ALQDSGLEVNI 1075
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1076 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLSWVPAHKGI 1122
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++ N
Sbjct: 1123 GGNEQIDKLVSNGIRKI 1139
>gi|56609282|gb|AAW03239.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + + KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIGKD-----KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSRGIRK 713
>gi|327458263|gb|AEA76571.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVHLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325636096|gb|ADZ33866.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLIDTTNQKTELKAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIEKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|331215471|ref|XP_003320416.1| hypothetical protein PGTG_01328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299406|gb|EFP75997.1| hypothetical protein PGTG_01328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 205
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Query: 15 GACSGNPGPGGWGVL-----LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
G+ G +L + S + + K
Sbjct: 12 GSSIPEQGTAAAALLNNSTSFACRINNAEDSSSFEAKVTAINIGLEMFKNNLNNLLSGNQ 71
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWK-TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D +Q K TS + I +KF+ +++ + L+W H
Sbjct: 72 HTIFDKQLNIFCDNQATLTTISKPPKSTSLQFRFNKIFTLLKFISSNSTTPIQLFWCPAH 131
Query: 129 AGNQENEKVDRIARNA 144
G EN+KVD +A+ A
Sbjct: 132 VGIPENKKVDSLAKEA 147
>gi|306477967|gb|ADM89358.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA +G G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANGETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|302594692|gb|ADL59534.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|256011464|gb|ACU55588.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVSXIIEQLINKEXVYLTWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 702 GGNEKVDKLVSAGIRK 717
>gi|256011132|gb|ACU55422.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTBKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGXEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|256010855|gb|ACU55284.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYITDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|255984704|gb|ACU46424.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984110|gb|ACU46127.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|222428399|gb|ACM50049.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRKTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQNSGL-----EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESALVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|157273973|gb|ABV28248.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|119508059|dbj|BAF42452.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGRAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114801282|gb|ABI79879.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|14091488|gb|AAK53763.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|13095129|gb|AAK12148.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|18157558|gb|AAL62030.1|AF382822_1 pol protein [Simian immunodeficiency virus]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + + + S + TTN + EL A AL +V +
Sbjct: 172 YVDGAANRDSKKGRAGYV---TNRGRYRSKDLENTTNQQAELWAVDLALKDSG--AQVNI 226
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 227 VTDSQYVMGVLQGLPDQS-------------DSPIVEQIIQKLTQKTAIYLAWVPAHKGI 273
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 274 GGNEEVDKL 282
>gi|1171166|gb|AAA86247.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + + + KV L W+ H G
Sbjct: 651 VSDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|73913834|gb|AAZ91811.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKAVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDNSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|306477619|gb|ADM89184.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVSNIIEQLIKKE-------------RVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|306477617|gb|ADM89183.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVSNIIEQLIKKE-------------RVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|306477615|gb|ADM89182.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K +V L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVSNIIEQLIKKE-------------RVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|289469888|gb|ADC96599.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKMGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYS-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|256011258|gb|ACU55485.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 604 YVDGAANXXTKXGKAGYVTNRGRQKVVSLNDTTNQKTELQAILLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSAGIRK 721
>gi|256010733|gb|ACU55223.1| pol protein [Human immunodeficiency virus 1]
Length = 766
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + G++K++S E T N+ + AI +V
Sbjct: 563 YVDGAANRETKLGKAGY---VTDXGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 615
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 616 NIVTDSQYALGIIQSQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 662
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 663 GIGGNEQVDKLVSSGIRK 680
>gi|238733975|gb|ACR55234.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|238636087|gb|ACR53258.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|238636077|gb|ACR53249.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|226348652|gb|ACO50645.1| pol protein [Human immunodeficiency virus 1]
Length = 767
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRKI 492
>gi|222428504|gb|ACM50133.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 698 GGNEHIDKLVSAGIRK 713
>gi|212382972|gb|ACJ25785.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKAVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDNSESELVNQIIEELIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|896057|gb|AAA93164.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
gi|896059|gb|AAC55947.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|56419886|ref|YP_147204.1| hypothetical protein GK1351 [Geobacillus kaustophilus HTA426]
gi|297530469|ref|YP_003671744.1| ribonuclease H [Geobacillus sp. C56-T3]
gi|56379728|dbj|BAD75636.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|297253721|gb|ADI27167.1| ribonuclease H [Geobacillus sp. C56-T3]
Length = 221
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 40/146 (27%), Gaps = 22/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL---- 63
E+ Y DG GG G ++ YK + A A
Sbjct: 73 EIVVYFDGGFDHETSQGGAGAVVYYKQNDHRYRLRANRRLGEIKSNNEAEYAAFWFVMQL 132
Query: 64 -----KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V DS V K S ++ + + +
Sbjct: 133 LEELGVHHLPVTFRGDSHVVLKQLSGDWPCFEDDFNI-----------WLDRIEAKMREL 181
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ + ++N++ D +AR A
Sbjct: 182 HIEPAYEP--ISRKQNKEADSLARQA 205
>gi|326416920|gb|ADZ73313.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416918|gb|ADZ73312.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416916|gb|ADZ73311.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416912|gb|ADZ73309.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416910|gb|ADZ73308.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416908|gb|ADZ73307.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416892|gb|ADZ73299.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416888|gb|ADZ73297.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416886|gb|ADZ73296.1| pol protein [Human immunodeficiency virus 1]
gi|326416890|gb|ADZ73298.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416882|gb|ADZ73294.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416880|gb|ADZ73293.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416876|gb|ADZ73291.1| pol protein [Human immunodeficiency virus 1]
gi|326416906|gb|ADZ73306.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416872|gb|ADZ73289.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416870|gb|ADZ73288.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416868|gb|ADZ73287.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416864|gb|ADZ73285.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416862|gb|ADZ73284.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416860|gb|ADZ73283.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416838|gb|ADZ73272.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|326416792|gb|ADZ73249.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|306478153|gb|ADM89451.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTNKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRKI 559
>gi|306477849|gb|ADM89299.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|297632021|dbj|BAJ09217.1| pol protein [Human immunodeficiency virus 1]
gi|297632031|dbj|BAJ09226.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|281191177|gb|ADA57100.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKMGKAGYVTDRGRQKVVTLTATTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIGKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|255983960|gb|ACU46052.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|222428286|gb|ACM49959.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+K +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALK-----DSGPEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLISKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|148469907|gb|ABQ65895.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGKQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIR 714
>gi|13095135|gb|AAK12150.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAHPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|896053|gb|AAC55946.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|73913805|gb|AAZ91785.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKVGKAGYVTGRGRQKVVTLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSGGIRK 709
>gi|60651888|gb|AAX32977.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|327440478|dbj|BAK16843.1| hypothetical protein SSIL_2420 [Solibacillus silvestris StLB046]
Length = 223
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 22/148 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---------SGGEKETTNNRMELMAA 56
EV Y DG + G G+++ YK K +A
Sbjct: 71 PTEVEVYFDGGFNREEKLAGLGIVVYYKQNGKNYRLRTNQLAEYLTSNNEAEYAALNLAV 130
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ + K+ +Y DS V + K
Sbjct: 131 EQLEEMGVHHQKIKIYGDSQVVINEMNGEWG-----------VTDSVLSTWADKIDAKLQ 179
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + H + N + D++A A
Sbjct: 180 KLGIRP--VYQHIDRKLNGEADQLANQA 205
>gi|312601947|gb|ADQ92530.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288187840|gb|ADC42407.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256011452|gb|ACU55582.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 605 YVDGAANRETKLGKAGYVTSKGRQKVVSMTDTTNQKTELQAIYLALQ-----DSGSEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 706
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 707 GGNEQVDKL 715
>gi|256011342|gb|ACU55527.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010779|gb|ACU55246.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKQGKAGYVTNRGRQKVVSLTDTTNQKTELRAIHLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|255983924|gb|ACU46034.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|238636061|gb|ACR53235.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|222428281|gb|ACM49955.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTNRGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|86371896|gb|ABC95006.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGKQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|63014651|gb|AAY25802.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 589 YVDGASNRETKLGKAGY---VTDRGRQKIVSLTE--TTNQRTELHAIYLALQDSGL--EV 641
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E +V L W+ H
Sbjct: 642 NIVTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIEKE-----RVYLSWVPAHK 688
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 689 GIGGNEQVDKLVSSGIRK 706
>gi|55139262|gb|AAV41285.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E ++ + +V
Sbjct: 590 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTETTNQKTELQAIKL----ALQDSGAEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 643 NIVTDSQYA-------------LGIIRAQPDNSESELVNQIIEQLIQKERVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|22596495|gb|AAN03257.1|AF457082_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|22596515|gb|AAN03275.1|AF457084_2 pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + +V L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------RVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 693 GIGGNEQVDKLVSAGIRKI 711
>gi|13569289|gb|AAK31027.1|AF286231_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|3002887|gb|AAD03241.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1450
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1043 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1097
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1098 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 1144
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1145 GGNEQVDKLVSAGIRKI 1161
>gi|328834246|gb|AEB52677.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRENKLGKAGY---ITDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNLIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|325634886|gb|ADZ32829.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDTSESEVVNQIIEQLITKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|289187402|gb|ADC92278.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289187368|gb|ADC92262.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIRKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|288558571|dbj|BAI68342.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIR 308
>gi|288558551|dbj|BAI68332.1| polyprotein [Human immunodeficiency virus 1]
Length = 325
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 189 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAIXL----ALQDSGSEV 241
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 242 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 288
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 289 GIGGNEQVDKLVSSGVRK 306
>gi|263200986|gb|ACY70086.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|263201014|gb|ACY70111.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|256011104|gb|ACU55408.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDXGRQKVVXLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011038|gb|ACU55375.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKXGKAGYVTDRGRQKVVPIADTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIR 718
>gi|255984676|gb|ACU46410.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984606|gb|ACU46375.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVXLNDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984590|gb|ACU46367.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984338|gb|ACU46241.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984300|gb|ACU46222.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238635226|gb|ACR52523.1| pol protein [Human immunodeficiency virus 1]
gi|238635245|gb|ACR52540.1| pol protein [Human immunodeficiency virus 1]
gi|238635263|gb|ACR52556.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|159031765|dbj|BAF91854.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAANRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L WI H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWIPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|110815945|sp|Q9WC54|POL_HV1S2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1025 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLALR-----DSGLEVNI 1079
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 1080 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGI 1126
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1127 GGNEQVDKLVSSGIRK 1142
>gi|145607461|ref|XP_361786.2| hypothetical protein MGG_12192 [Magnaporthe oryzae 70-15]
gi|145015009|gb|EDJ99577.1| hypothetical protein MGG_12192 [Magnaporthe oryzae 70-15]
Length = 507
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 21 PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80
PGP G +R S G + + ++ +
Sbjct: 236 PGPSPAGGKIRTACG--CTSQGSGGMQEAARRFIKWLDMVSPDDIVAAAKAQPGARIWIC 293
Query: 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
S + + S + + + +V + W GH G N++ D +
Sbjct: 294 VDSTSVIWGLRGDAPRSSQWAFLEFHDLVDLLRKQGT-EVRVRWCPGHQGIPGNDRADEL 352
Query: 141 ARNA 144
A+
Sbjct: 353 AKAG 356
>gi|55275177|gb|AAV49397.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSIPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|46254429|gb|AAS86182.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSDSELVSQIIEELIKKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|42592280|emb|CAF29001.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 557
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + TTN + EL A + AL +V
Sbjct: 425 YVDGAANRETKLGRAGY---VTNKGKQKVVSITD--TTNQKTELQAILLALQDSGL--EV 477
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 478 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHK 524
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 525 GIGGNEQVDKLVSNGIRK 542
>gi|62997585|gb|AAY24643.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|60651947|gb|AAX33030.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|288187710|gb|ADC42346.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011346|gb|ACU55529.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|256011124|gb|ACU55418.1| pol protein [Human immunodeficiency virus 1]
Length = 914
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKIVSLTD---TTNQQTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLINKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|212383148|gb|ACJ25870.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E ++ + +V
Sbjct: 589 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTETTNQKTELQAIKL----ALQDSGAEV 641
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 642 NIVTDSQYA-------------LGIIRAQPDNSESELVNQIIEQLIQKERVYLSWVPAHK 688
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 689 GIGGNEQVDKLVSSGIRK 706
>gi|192335097|gb|ACF04080.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQQTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|7021456|gb|AAF35355.1| pol [Human immunodeficiency virus 1]
Length = 846
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|25166731|gb|AAN73529.1|AF484488_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1432
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1025 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 1077
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1078 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1124
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1125 GIGGNEQVDKLVSNGIRKI 1143
>gi|6643027|gb|AAF20388.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 505 YVDGASNRETKLGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 544
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + +V L W+ H
Sbjct: 545 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKERVYLSWVPAHK 604
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 605 GIGGNEQVDKLVSSGIRK 622
>gi|1072088|gb|AAC54544.1| polymerase polyprotein [Human immunodeficiency virus 1]
Length = 947
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRKI 658
>gi|327458213|gb|AEA76546.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K+IS + ++ + +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVISLTDTTNQKTELQAINL----ALQDSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIR 557
>gi|325495412|gb|ADZ17317.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 590 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 643 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|321452689|gb|EFX64018.1| hypothetical protein DAPPUDRAFT_334682 [Daphnia pulex]
Length = 197
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S + + + KE G T A
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYVMDD 81
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + +Y+DSS S + T + + W
Sbjct: 82 CPPEAFIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRL----------TW 131
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 132 IPSHTGIEGNERTDRLA 148
>gi|306416220|gb|ADM86957.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTVTTNQQTELHAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|295703582|ref|YP_003596657.1| RNase H [Bacillus megaterium DSM 319]
gi|294801241|gb|ADF38307.1| RNase H [Bacillus megaterium DSM 319]
Length = 187
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 22/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--------GGEKETTNNRMELMAAI-K 58
++ AY DG + G GV++ +K E I +
Sbjct: 43 DIVAYFDGGYEHDTLLAGLGVVIYFKQNNNSYRIRRNSRLQEIESNNEAEYAAFYYLIQE 102
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V DS V + +++ + D+ K +L ++ V
Sbjct: 103 LEELGVHHIPVTFRGDSQVVLNQLAGEWPCFEEEFNRYLDRIEDKMQELGIRPVYEP--- 159
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ENE+ D++A A
Sbjct: 160 ----------ISRKENEEADQLATQA 175
>gi|289469806|gb|ADC96558.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+K +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALK-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLISKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187838|gb|ADC42406.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + E + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQALPDKSE-------------SELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187535|gb|ADC42262.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTESQAIYLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSHIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSAGIRK 657
>gi|256011246|gb|ACU55479.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGEEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|256011166|gb|ACU55439.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRESRLGKAGYVTNRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984748|gb|ACU46446.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984250|gb|ACU46197.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTDRGXQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|238734306|gb|ACR55526.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDSSETEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|238734204|gb|ACR55437.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428360|gb|ACM50018.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|212382941|gb|ACJ25770.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKVGKAGYVTGRGRQKVVTLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSGGIRK 709
>gi|154272327|ref|XP_001537016.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409003|gb|EDN04459.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 77
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
QH V L W GH + NE+ DR+ + A S
Sbjct: 18 QHNVGLKWAPGHMRIEGNEEADRLTKRAVSSA 49
>gi|119507238|dbj|BAF42479.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKDRVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221416|gb|AAQ89837.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13095344|gb|AAK12236.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDHSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|1732476|gb|AAB38824.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 1026 YVDGAASRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + +K ++ KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSESDIVNQIIEKLIEKE-------------KVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|49574301|gb|AAT66821.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+ S + N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVASLTDA---TNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|13891906|gb|AAG50332.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|13891870|gb|AAG50314.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|13569299|gb|AAK31036.1|AF286232_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 595 YVDGAANRETKLGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + +V L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|56609262|gb|AAW03221.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESGIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|31559680|dbj|BAC77502.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K+ S E T N+ + AI +V
Sbjct: 1023 YVDGAASRETKLGKAGY---VTDRGRQKVASLTE---TTNQKTELHAIHLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 1076 NIVTDSQYA-------------LGIIQAQPDKSESEVVDQIIEELIKKEKVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1123 GIGGNEQVDKLVSSGIRK 1140
>gi|327458219|gb|AEA76549.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|326370752|gb|ADZ56520.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|238633665|gb|ACR51657.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|242816044|ref|XP_002486691.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715030|gb|EED14453.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 19/159 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGP-GGW-----------GVLLRYKGKEKIISGGEKETTN 48
+ S ++ Y+D + N GG+ G + KE + E T
Sbjct: 103 LQSIPNNDIIIYSDRSKLENGQTDGGYIGFQAGSQFLRGSIPLRHNKEVFDAEAEAALTG 162
Query: 49 NRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
+ ++ + + + C L + ++ +
Sbjct: 163 LKATMIHSTAQCSLNLWICLDNLEVAIQLLSLSIGSSQAVFESFNTLAAT-------WPL 215
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + V + W+ GHA NE D + A
Sbjct: 216 RRRLPQIESRAVQIRWVPGHANISRNEAADCTTKEGAGK 254
>gi|172044539|sp|P0C6F2|POL_HV1LW RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRKI 1146
>gi|170778893|gb|ACB36846.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSXIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|86560155|gb|ABD04218.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGRQKIVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYVLGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|58220891|gb|AAW68080.1| pol protein [Human immunodeficiency virus 1]
gi|212383202|gb|ACJ25893.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKMGKAGYVTDRGRQKIVPLSETTNQKTELHAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDRVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|51950771|gb|AAU14958.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|14091514|gb|AAK53776.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|13095324|gb|AAK12226.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIERLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13891856|gb|AAG50307.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAVHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891854|gb|AAG50306.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAVHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1176376|gb|AAA86731.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKXXVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|327458289|gb|AEA76584.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLADTTNQXTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEXVXQIIEXLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306416478|gb|ADM87086.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S E T N+ + AI +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306416282|gb|ADM86988.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTVTTNQQTELHAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|299738511|ref|XP_001838400.2| hypothetical protein CC1G_12492 [Coprinopsis cinerea okayama7#130]
gi|298403341|gb|EAU83425.2| hypothetical protein CC1G_12492 [Coprinopsis cinerea okayama7#130]
Length = 473
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 20/153 (13%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE---KETTNNRMELMAAIKALTAL 63
+E +TD +C W VL + K + S K+ + K
Sbjct: 294 KETTVFTDRSC--------WIVLGKRNSKRESRSRPLVQGKQREEQGNKTPNPPKLQQRR 345
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH----- 118
+ C + K + + + + K + H
Sbjct: 346 RTSCGDGSHPRKQNCEKHKNSQQLPIHDKRHNKTPTRLARQGVHRNKKHKHPTSHNRRTD 405
Query: 119 ----KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
K+ L +KGH+G+ N+ D A A
Sbjct: 406 PNSAKIMLRKVKGHSGDTGNDGADAKAAEGANK 438
>gi|289469858|gb|ADC96584.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|256011220|gb|ACU55466.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|256010683|gb|ACU55198.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVIPLSDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984630|gb|ACU46387.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSXJEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLXKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238635623|gb|ACR52847.1| pol protein [Human immunodeficiency virus 1]
gi|238635632|gb|ACR52855.1| pol protein [Human immunodeficiency virus 1]
gi|238635642|gb|ACR52864.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|238635613|gb|ACR52838.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|238635235|gb|ACR52531.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|242818213|ref|XP_002487072.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
gi|218713537|gb|EED12961.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
Length = 216
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++WI H G + NE+ D A+ A
Sbjct: 47 QVTIHWIPAHQGIEGNERADIAAKEA 72
>gi|212382719|gb|ACJ25670.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKIGKAGYVTDRGRQKIIPLTETTNQKAELQAIQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERTYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|212382602|gb|ACJ25619.1| pol protein [Human immunodeficiency virus 1]
Length = 938
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ + + V Y DGA + G G + ++ I + A++
Sbjct: 580 LEKEPMVGVETFYVDGAANRETKVGRAGYVTDRGRQKVITLTETTNQKTELQAVQLALQ- 638
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+V + TDS YV K + + + + + +
Sbjct: 639 ----DSGSEVNIVTDSQYVLGIIQALPDKSE-------------SELVNQIIEQLIKKER 681
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V L W+ H G NE+VD++ N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSNGIR 708
>gi|156051534|ref|XP_001591728.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980]
gi|154704952|gb|EDO04691.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 947
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTD + + L G I+ + E + I +
Sbjct: 632 NTITIYTDASST-----------LEGIGIGIGIAVILPNNRISHQETIN-IGVNQLVYNG 679
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWK-------TSDKKTVKNIDLWMKFVEASAQHK 119
+ + Y + K + + T ++ + + Q+K
Sbjct: 680 ELLGVAKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNK 739
Query: 120 ---VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 740 GAEISLNWVPGHTSVQGNELADSLAKEA 767
>gi|37682751|gb|AAQ98339.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L WI H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEIVSQIIEELIKKEKVYLSWIPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|37221392|gb|AAQ89825.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221306|gb|AAQ89784.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESGLVSQIIEQLIKKDKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|33328189|gb|AAQ09538.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEIVNQIVEELIKKDKIYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|22596223|gb|AAN03016.1|AF457051_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE--TTNQRTELHAIYLALQDSGL--EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIGKKRVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|82571320|gb|ABB84086.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVISLNETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNEIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|327458243|gb|AEA76561.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKXVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|323489353|ref|ZP_08094583.1| ribonuclease H [Planococcus donghaensis MPA1U2]
gi|323396994|gb|EGA89810.1| ribonuclease H [Planococcus donghaensis MPA1U2]
Length = 129
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALKYP 66
+ + D A +G P GV +R +G S E N+ E A +K L P
Sbjct: 2 LEVFVDAASAGIPQVSAVGVFIRGEGHVIHWSEYVGEMDNHTAEFTALVKGLELAKELAP 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS F + K ++ ++ + +
Sbjct: 62 QMISIKSDSQVTVDAF---------ERRFIKNPKFKPLLERALEIGDQFEYCFIKW---- 108
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
+ +N D +AR + K
Sbjct: 109 --IPDSQNRAADALARTELRAHK 129
>gi|306478083|gb|ADM89416.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416384|gb|ADM87039.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GLGGNEQVDKLVSSGIRK 558
>gi|291603759|gb|ADE20151.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288187797|gb|ADC42387.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187545|gb|ADC42267.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 642 GGNEQIDKLVSNGIRK 657
>gi|270272485|gb|ACZ67668.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVISITD---TTNQKTELEAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|256011724|gb|ACU55718.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|256011622|gb|ACU55667.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETRLGKAGYVTNRGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRKI 713
>gi|256010709|gb|ACU55211.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSXIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984924|gb|ACU46534.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984600|gb|ACU46372.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984254|gb|ACU46199.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|256252404|dbj|BAH97434.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|148469878|gb|ABQ65869.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|47680177|gb|AAT37062.1| pol/vif protein [Human immunodeficiency virus 2]
Length = 1226
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + A++ KV +
Sbjct: 623 YTDGSCNRASKQGKAGYVTDRGKDRVKPLEQTTNQQAELEAFAMALE-----DSGPKVNI 677
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ + + + + + E + V + W+ H G
Sbjct: 678 VTDSQYIMGIIAGQPTETE-------------SPLVSKIIEELIRKEAVYVGWVPAHKGI 724
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 725 GGNQEVDHLVSQGIRQ 740
>gi|37934292|gb|AAO84272.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 578
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSELELVNQIIEKLIEKD-------------KVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|29119257|gb|AAO63179.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|22596445|gb|AAN03212.1|AF457077_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +G++K++S E T N+ + AI +V +
Sbjct: 596 YVDGAANRETKIGKAG-YITDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|726195|gb|AAA64576.1| pol polypeptide [Human immunodeficiency virus 2]
Length = 1035
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 623 YTDGSCNRQSKEGKAGYITDRGRDKV---RILEQTTNQQAELEAFAMALTDSGPKANIIV 679
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 680 --DSQYVMGIVAGQPTESE-------------SKLVNQIIEEMIKKETLYVAWVPAHKGI 724
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 725 GGNQEVDHLVSQGIRQ 740
>gi|60651858|gb|AAX32950.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458237|gb|AEA76558.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDXGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQSQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|326370632|gb|ADZ56414.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTNKGRQKVIS---LNDTTNQQAELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|306477759|gb|ADM89254.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306416418|gb|ADM87056.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASREIKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVIQIIEEVIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|294992464|gb|ACU55325.2| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|289469784|gb|ADC96547.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 441 YVDGAADRETKIGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSXLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|283970318|gb|ADB54791.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|255984900|gb|ACU46522.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984648|gb|ACU46396.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSIXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984404|gb|ACU46274.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|238635604|gb|ACR52830.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIRK 713
>gi|170778857|gb|ACB36828.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|144678929|gb|ABP01793.1| pol protein [Human immunodeficiency virus 1]
gi|144678931|gb|ABP01794.1| pol protein [Human immunodeficiency virus 1]
gi|144678933|gb|ABP01795.1| pol protein [Human immunodeficiency virus 1]
gi|144678935|gb|ABP01796.1| pol protein [Human immunodeficiency virus 1]
Length = 419
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 12 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 64
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 65 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 111
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 112 GIGGNEQVDKLVSSGIRK 129
>gi|87083812|gb|ABD19475.1| pol protein [Simian immunodeficiency virus]
Length = 1010
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KIIS E T N+ + AI+ +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDKGRQKIISLTE---TTNQKAELQAIQLALQDSEV-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + E + KV L W+ H
Sbjct: 652 NIVTDSQYALGIIQGQPDTSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 699 GIGGNEQIDKLVSSGIRK 716
>gi|49472933|gb|AAT66277.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SEVVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSDGIRK 713
>gi|37221254|gb|AAQ89758.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKAELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYT-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13095093|gb|AAK12134.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 558
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQGSGL-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13095205|gb|AAK12181.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T+N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TSNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NMVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|37682530|gb|AAQ98217.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 967
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKGKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|2737929|gb|AAB97130.1| pol polyprotein [Simian immunodeficiency virus]
Length = 986
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG+C+ G G+ + +GK+K+ ++TTN + EL A + ALT +
Sbjct: 574 YVDGSCNKQSKEGKAGY---ITDRGKDKV--RVLEQTTNQQAELEAFLMALTDSGPKANI 628
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ DS YV + + + + + E + ++ + W+ H
Sbjct: 629 IV--DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKTEIYVAWVPAHK 673
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 674 GIGGNQEIDHLVSQGIRQ 691
>gi|71725953|gb|AAZ39090.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|77416880|sp|P04589|POL_HV1EL RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSQGIRK 1145
>gi|325495410|gb|ADZ17316.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 594 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 633
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 634 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSTGIRK 711
>gi|306416266|gb|ADM86980.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594720|gb|ADL59548.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I T N+ + AI +V +
Sbjct: 1 YVDGAASKETKVGKAGYVTDRGRQKVIT----LTDTTNQKTELEAIHLALQDSGL-EVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 ITDSQYA-------------LGIIQAIPDKSESEIVNQIIEQLINKEKVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|291190980|pdb|2KQ2|A Chain A, Solution Nmr Structure Of The Apo Form Of A Ribonuclease H
Domain Of Protein Dsy1790 From Desulfitobacterium
Hafniense, Northeast Structural Genomics Target Dhr1a
gi|295789222|pdb|2KW4|A Chain A, Solution Nmr Structure Of The Holo Form Of A Ribonuclease
H From D.Hafniense, Northeast Structural Genomics
Consortium Dhr1a
Length = 147
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 20/149 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET-----TNNRMELMA 55
MD + E YTDG+ G W GK + N +A
Sbjct: 1 MDDRT--EYDVYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIA 56
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
A V + Y F + +N + + K +
Sbjct: 57 AALYAVKKASQLGVKIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIY------ 110
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+K H+GN+ N+ VD A++A
Sbjct: 111 -----SFEKVKAHSGNEFNDYVDMKAKSA 134
>gi|289469768|gb|ADC96539.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187720|gb|ADC42351.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|288187644|gb|ADC42314.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|260533645|gb|ACX45053.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKDKIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011764|gb|ACU55738.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011326|gb|ACU55519.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQXQPDRSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984882|gb|ACU46513.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255983992|gb|ACU46068.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDRGRQKVVSIAD---TTNQKTELEAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|233956526|gb|ACQ91222.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|157885637|gb|ABV91560.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|145607786|ref|XP_365862.2| hypothetical protein MGG_13593 [Magnaporthe oryzae 70-15]
gi|145015286|gb|EDJ99822.1| hypothetical protein MGG_13593 [Magnaporthe oryzae 70-15]
Length = 219
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 119 EVRVRWCPGHQGIPGNDRADELAKAG 144
>gi|145603697|ref|XP_369582.2| hypothetical protein MGG_10808 [Magnaporthe oryzae 70-15]
gi|145011872|gb|EDJ96528.1| hypothetical protein MGG_10808 [Magnaporthe oryzae 70-15]
Length = 516
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 326 EVRVRWCPGHQGIPGNDRADELAKAG 351
>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
Length = 1219
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
K+ + WI GH+G + NE D+ A++A
Sbjct: 1038 QHAPKIKIMWIPGHSGIKGNELADQAAKSA 1067
>gi|37221462|gb|AAQ89860.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRTGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|37221460|gb|AAQ89859.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRTGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|13095191|gb|AAK12174.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T ++ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTDQKTELQAIHLALQDPGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095374|gb|AAK12247.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + KG++K++S T N+ + AI +V
Sbjct: 443 YVDGAADRETKLGKAGY---ITDKGRQKVVSITA---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|37414009|gb|AAO65394.1| pol protein [synthetic construct]
Length = 849
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 442 YVDGAANRETKLGKAGYITDRGRQKIVTLTETTNQKTELQAIYLALQ-----DSGSEVNI 496
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 497 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 543
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 544 GGNEQVDKLVSKGIRK 559
>gi|60651937|gb|AAX33021.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHTGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|326370601|gb|ADZ56387.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRK 714
>gi|325636859|gb|ADZ34511.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325636790|gb|ADZ34453.1| pol protein [Human immunodeficiency virus 1]
gi|325636821|gb|ADZ34479.1| pol protein [Human immunodeficiency virus 1]
gi|325636840|gb|ADZ34495.1| pol protein [Human immunodeficiency virus 1]
gi|325636871|gb|ADZ34521.1| pol protein [Human immunodeficiency virus 1]
gi|325636876|gb|ADZ34525.1| pol protein [Human immunodeficiency virus 1]
gi|325636881|gb|ADZ34529.1| pol protein [Human immunodeficiency virus 1]
gi|325636886|gb|ADZ34533.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478049|gb|ADM89399.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011710|gb|ACU55711.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSAGIRK 716
>gi|255984488|gb|ACU46316.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984458|gb|ACU46301.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984420|gb|ACU46282.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984244|gb|ACU46194.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984262|gb|ACU46203.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984674|gb|ACU46409.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984964|gb|ACU46554.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984152|gb|ACU46148.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984092|gb|ACU46118.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255984082|gb|ACU46113.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255983974|gb|ACU46059.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + G++ I +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGGQKIIS---LTDTTNQKAELEAIHLALQDSGL--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256252354|dbj|BAH97389.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|212383273|gb|ACJ25924.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|164415900|gb|AAU14985.2| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQ-----DSGPEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|110815947|sp|O89940|POL_HV1SE RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1433
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1026 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQ-----DSRSEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 1081 VTDSQYALGIIQAQPDRSE-------------AELVNQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1128 GGNEQVDKLVSSGIRK 1143
>gi|46946852|gb|AAT06641.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-AQV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K V+ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLVEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|45361187|gb|AAS59381.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|37725226|gb|AAR02291.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVIPIKDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQARPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 708 GGNEQVDKLVSTGIRK 723
>gi|37221498|gb|AAQ89877.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221406|gb|AAQ89832.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221500|gb|AAQ89878.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|3947927|gb|AAC82617.1| pol protein [HIV-1 CRF04_cpx]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +S + T + +A +V
Sbjct: 595 YVDGAANRETKQGKAGY-VTDRGRQKVVSLSETTNQKTELQAIYLAL------QDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYAIGIIQAQPDRSE-------------SDLVNQIIEQLIRKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|328833984|gb|AEB52444.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAAHRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAHPDRSE-------------SELVNQIIEELIRKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|327458217|gb|AEA76548.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325634854|gb|ADZ32801.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 656 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLITKE-----KVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|306477763|gb|ADM89256.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|288899144|gb|ADC67104.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288558567|dbj|BAI68340.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + K+ L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKDKIYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|288187584|gb|ADC42285.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011448|gb|ACU55580.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKSGKAGYVTDRGRQKVVSITDTTNQKTELQAIYLALQ-----DSXVEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|255984350|gb|ACU46247.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGXQKXVSLTDTTNQXTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238734158|gb|ACR55396.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + +K ++ KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDSSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRKI 715
>gi|212536828|ref|XP_002148570.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
gi|210070969|gb|EEA25059.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
Length = 1262
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 23/142 (16%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGE-------KETTNNRMEL 53
+S+ + YTDG+ G G G +++ +++ + G E E +
Sbjct: 943 NSRTM----IYTDGS--GYQGYIGTSMVIPQFQQQMTECIGTEDTSTVYAAEACGIKFAF 996
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
++ +V +++DS + +T + + +
Sbjct: 997 QTLLRFADDNARLRRVAIFSDSQ---------PALRALQNPRMVSGQTYIRDCINLYWEC 1047
Query: 114 ASAQHKVDLYWIKGHAGNQENE 135
+ ++WI GH G NE
Sbjct: 1048 KDNNIDIVIHWIPGHEGVPGNE 1069
>gi|192335069|gb|ACF04055.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLITKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|157274051|gb|ABV28318.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|145207175|gb|ABP37936.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|119507288|dbj|BAF42524.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+++++S E TTN + EL A + AL V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQRVVSLTE--TTNQKTELHAILLALQDSG--SAV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIHAQPDRSESELVNNIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114841722|dbj|BAF32175.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|59003638|gb|AAW83636.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|37682441|gb|AAQ98137.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|23099704|ref|NP_693170.1| hypothetical protein OB2249 [Oceanobacillus iheyensis HTE831]
gi|22777934|dbj|BAC14205.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
Length = 220
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 22/151 (14%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGG-----EKETTNNRMELMAAIKA--- 59
+ Y DG N G GV++ Y+ +K E+ NN E +
Sbjct: 72 HILVYFDGGFDRNDLIAGVGVVIYYEKNKKYFRRRKNVKLEQLDNNNEAEYAGLYHSLEL 131
Query: 60 -LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DS V + +++N + + I+ ++ + +
Sbjct: 132 LEEMQATHQSITFKGDSMVVIHQLKEEWPCYEENLQ-----RWIDRIENKIEQLGIQPDY 186
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+V ++N++ D++A + +
Sbjct: 187 QV--------IPRKDNKEADQLASQSIQGIQ 209
>gi|327458215|gb|AEA76547.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325635885|gb|ADZ33682.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLIDTTNQKTELKAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIGKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325634830|gb|ADZ32780.1| pol protein [Human immunodeficiency virus 1]
gi|325635011|gb|ADZ32938.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 656 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLITKE-----KVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|312601880|gb|ADQ92497.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288187698|gb|ADC42340.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIRLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256010833|gb|ACU55273.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLXWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984672|gb|ACU46408.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984598|gb|ACU46371.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|238635902|gb|ACR53093.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIQKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|269956870|ref|YP_003326659.1| phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
gi|269305551|gb|ACZ31101.1| Phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
Length = 412
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAIKALT-- 61
RE+ DG GNPGP G+G L+R +G TNN E ++ L
Sbjct: 7 RELVVEADGGSRGNPGPAGYGALVRDVATGSVLAERAGYLGVATNNVAEYTGLLEGLRAA 66
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIK 87
+ +V + DS V + S +
Sbjct: 67 AGIDPAARVHVRLDSRLVVEQMSGRWQ 93
>gi|222428608|gb|ACM50216.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 605 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 707 GGNEQVDKLVSSGIRK 722
>gi|148745863|emb|CAK49320.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 595 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSDSELVNKIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|114431146|dbj|BAF31397.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|57869685|gb|AAW57723.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 591 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 630
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 631 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEKVYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 691 GIGGNEQVDKLVSSGIRK 708
>gi|46946827|gb|AAT06619.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLME---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDQSDSEIVNQIIEKLIEKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|13095159|gb|AAK12161.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGITQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095114|gb|AAK12141.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQATHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDHSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1151161|gb|AAA85231.1| pol [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|86753653|gb|ABD15071.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 593 YVDGAANRETKTGKAGYVTDKGRQKIATLNETTNQKAELQAIQLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKERIYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|78128528|gb|ABB22757.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K+I+ E ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVITLTETTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|60651868|gb|AAX32959.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|56609322|gb|AAW03275.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|86134668|ref|ZP_01053250.1| ribonuclease H-related protein [Polaribacter sp. MED152]
gi|85821531|gb|EAQ42678.1| ribonuclease H-related protein [Polaribacter sp. MED152]
Length = 211
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALKYPCK 68
D ACSGNPG + +L + KE G K+ TNN E +A + + K +
Sbjct: 82 ISVDAACSGNPGKMEYRGVLTHNKKEIFRKGPFKKGTNNIGEFLALVHGIALLKSKQKEE 141
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V +Y+DS Q K + S+K + I +++ + L W
Sbjct: 142 VPIYSDSKIAMSWVRQK-KCKTNLHFDASNKDLLDLIKRAENWLKQNTFKNPILKW 196
>gi|327458381|gb|AEA76630.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNKETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|327458379|gb|AEA76629.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNKETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|326486509|gb|ADZ76333.1| pol protein [Human immunodeficiency virus 1]
Length = 878
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 527 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 581
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 582 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLAWVPAHKGI 628
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 629 GGNEQVDKLVSSGIRK 644
>gi|312601897|gb|ADQ92505.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601849|gb|ADQ92482.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477525|gb|ADM89137.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477477|gb|ADM89113.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|259122632|gb|ACV92602.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V+ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDKSESELVNLIIEKLVEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|294498231|ref|YP_003561931.1| RNase H [Bacillus megaterium QM B1551]
gi|294348168|gb|ADE68497.1| RNase H [Bacillus megaterium QM B1551]
Length = 187
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--------GGEKETTNNRMELMAAIKA 59
++ AY DG + G GV++ +K E I+
Sbjct: 43 DIVAYFDGGYEHDTLLAGLGVVIYFKQNNNSYRIRRNSRLQEIESNNEAEYAAFYYLIQV 102
Query: 60 LTA-LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + V DS V + +++ + D+ K +L ++ V
Sbjct: 103 LEELGVHHIPVTFRGDSQVVLNQLAGEWPCFEEEFNRYLDRIEDKMQELGIRPVYEP--- 159
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ENE+ D++A A
Sbjct: 160 ----------ISRKENEEADQLATQA 175
>gi|289187397|gb|ADC92276.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187392|gb|ADC92274.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187382|gb|ADC92269.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I T N+ + AI +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVIT----LTDTTNQKTELEAIHLALQDSGV-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESKIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|289187244|gb|ADC92201.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGTEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188484|gb|ADC42716.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187854|gb|ADC42414.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187842|gb|ADC42408.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011244|gb|ACU55478.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLTWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 706 GGNEQVDKLVSNGIRKI 722
>gi|255984770|gb|ACU46457.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984512|gb|ACU46328.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984258|gb|ACU46201.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLXVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|226347261|gb|ACO50034.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428365|gb|ACM50022.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQRVVSLTDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|222428241|gb|ACM49923.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|170778877|gb|ACB36838.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANKETKSGKAGYVTDKGRQKVXSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|156254389|gb|ABU62684.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S + ++ + +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKSVSINDTTNQKTELQAICL----ALQDSGLEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSAGIR 117
>gi|114842072|dbj|BAF32490.1| Pol [Human immunodeficiency virus 1]
gi|114842082|dbj|BAF32499.1| Pol [Human immunodeficiency virus 1]
gi|114842092|dbj|BAF32508.1| Pol [Human immunodeficiency virus 1]
gi|114842112|dbj|BAF32526.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114842042|dbj|BAF32463.1| Pol [Human immunodeficiency virus 1]
gi|114842052|dbj|BAF32472.1| Pol [Human immunodeficiency virus 1]
gi|114842102|dbj|BAF32517.1| Pol [Human immunodeficiency virus 1]
gi|114842132|dbj|BAF32544.1| Pol [Human immunodeficiency virus 1]
gi|114842142|dbj|BAF32553.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095071|gb|AAK12126.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVHLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|49574303|gb|AAT66822.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|26000275|gb|AAN75308.1| pol protein [Human immunodeficiency virus 1]
Length = 994
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +
Sbjct: 587 YVDGAANRETKIGKAGYVTDKGRQKIVT---LNETTNQKAELQAIQLALQDSGSEANI-- 641
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 642 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 688
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 689 GGNEQVDKLVSSGIRK 704
>gi|61102594|gb|AAX37732.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KI+S E T N+ + AI+ +V +
Sbjct: 20 YVDGAANRET-KMGKAGYVTDRGRQKIVSLTE---TTNQKTELHAIQLALQDSG-SEVNI 74
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 75 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 122 GGNEQVDKLVSSGIRK 137
>gi|306477635|gb|ADM89192.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477527|gb|ADM89138.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAKPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187521|gb|ADC42255.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011768|gb|ACU55740.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + E V L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQGHPDKSDSEIVNQIIEQLIXKE-----XVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256011568|gb|ACU55640.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|256011334|gb|ACU55523.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|256011018|gb|ACU55365.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKSGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + V L W+ H G
Sbjct: 650 VTDSQYALGIJ-------------QAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVXAGIRK 712
>gi|238734000|gb|ACR55256.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428236|gb|ACM49919.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|216263185|gb|ACJ72005.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAASRETKLGKAGY---VTDRGRQKVVSLSE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSTGIRK 711
>gi|148745885|emb|CAK49331.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 ITDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|119507298|dbj|BAF42533.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+++++S E TTN + EL A + AL V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQRVVSLTE--TTNQKTELHAILLALQDSG--SAV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIHAQPDRSESELVNNIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114842032|dbj|BAF32454.1| Pol [Human immunodeficiency virus 1]
gi|114842062|dbj|BAF32481.1| Pol [Human immunodeficiency virus 1]
gi|114842122|dbj|BAF32535.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114430823|dbj|BAF31622.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTNRGRQKVVSLTETTNQKTELHAICL----ALQDSGPEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|63014488|gb|AAY25658.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|55275217|gb|AAV49433.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|38491605|gb|AAR22004.1| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 590 YVDGAANRDTKLGKAGY---VTDRGRQKVVSLPE---TTNQKTELHAIHLALQDSG-SEV 642
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 643 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 689
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 690 GIGGNEQVDKLVSSGIRK 707
>gi|13095268|gb|AAK12206.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|4324889|gb|AAD17153.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGAEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESESVNQIIEQLINKERIYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|13095319|gb|AAK12224.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095264|gb|AAK12205.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095176|gb|AAK12168.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095381|gb|AAK12249.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|14030534|gb|AAK52940.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 428 YVDGAANRETKLGKAGY---ITNRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 481 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 527
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 528 GIGGNEQVDKLVSAGIRK 545
>gi|13095244|gb|AAK12198.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095148|gb|AAK12156.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095193|gb|AAK12175.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095309|gb|AAK12220.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095091|gb|AAK12133.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095246|gb|AAK12199.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|16751250|gb|AAL05326.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 592 YVDGAANRETKIGRAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|13095182|gb|AAK12171.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095169|gb|AAK12165.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095316|gb|AAK12223.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095378|gb|AAK12248.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095257|gb|AAK12203.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095403|gb|AAK12257.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095407|gb|AAK12259.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095118|gb|AAK12143.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095401|gb|AAK12256.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095255|gb|AAK12202.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095332|gb|AAK12230.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095423|gb|AAK12267.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|25166689|gb|AAN73492.1|AF484483_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|325637600|gb|ADZ35134.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPNKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325636048|gb|ADZ33824.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKDRVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|312601935|gb|ADQ92524.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|289187376|gb|ADC92266.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGGEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187321|gb|ADC92239.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYXAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRKI 658
>gi|288187616|gb|ADC42301.1| pol protein [Human immunodeficiency virus 1]
Length = 668
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|260533734|gb|ACX45133.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 650 NVVTDSQYA-------------LGIIQAQPDKSESELVSQIIEKLIEKDKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|260533655|gb|ACX45062.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTETTNQRTELHAIYLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + + KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIGKD-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984408|gb|ACU46276.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255708271|dbj|BAH96488.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S +TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGKQKVVS--LPDTTNQKTELQAIHLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVRK 713
>gi|238733846|gb|ACR55121.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSHIIEQLINKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|157005074|gb|ABV00775.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGVEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|145207171|gb|ABP37934.1| pol protein [Human immunodeficiency virus 1]
gi|145207173|gb|ABP37935.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|114801350|gb|ABI79940.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|116062027|dbj|BAF34642.1| pol polyprotein [HIV-1 vector pNL-DT5R]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|37221428|gb|AAQ89843.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGXAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSHGIRK 657
>gi|13095393|gb|AAK12253.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095197|gb|AAK12177.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|14091542|gb|AAK53790.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|55735995|gb|AAV59723.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|62956357|gb|AAY23493.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGVEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|325636056|gb|ADZ33831.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLIDTTNQKTELKAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIGKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|302594712|gb|ADL59544.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAAHKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + +V L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSDSELVNQIIEKLIEKERVYLAWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRK 118
>gi|283444887|gb|ADB20354.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGNAGYVTDRGRQKIVSLSETTNQKAELQAIQLALQESGP-----EVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSKGIRK 721
>gi|256011028|gb|ACU55370.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|255984334|gb|ACU46239.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLKVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|114841762|dbj|BAF32211.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSELVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|112351449|gb|ABI15241.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|37221348|gb|AAQ89803.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ G +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKV---GTITDTTNQKTELQAIHLALQDSGL--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221418|gb|AAQ89838.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIXQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|32261282|gb|AAP74181.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|13095227|gb|AAK12191.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKTEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|62548159|gb|AAX86714.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|27356950|gb|AAN34508.1| pol protein [Simian immunodeficiency virus]
Length = 656
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 18/147 (12%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ Y DGA + G G + + I +E++N + E+ A I+AL
Sbjct: 337 PAPMEVETFYVDGAYNRKSKEGKAGYVSSGGKHKIIH---IQESSNQKAEIRAIIEALRD 393
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
K +V + TDS Y + + + + E + ++ +
Sbjct: 394 SK--SEVNIVTDSLYAMGIVLEKPEVSE-------------EPLIQELIKELEKKERIYI 438
Query: 123 YWIKGHAGNQENEKVDRIARNAAVSFK 149
W+ H G N++VD++ + +
Sbjct: 439 GWVPAHKGLGGNQEVDQLVSKGIRTKQ 465
>gi|326370781|gb|ADZ56546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRENKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|308445376|gb|ADO32857.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRDSKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSAGIRK 721
>gi|308445366|gb|ADO32848.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DGA S G G+ V R K K +S + + +A +V
Sbjct: 600 FVDGAASRETKLGKAGY-VTDRGKQKVITLSETTNQKAELQAIQIAL------QDSGSEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 653 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 700 GIGGNEQVDKLVSSGIRK 717
>gi|295883797|gb|ADG57033.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SDLVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|288187543|gb|ADC42266.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNERIDKLVSSGIRK 558
>gi|263201004|gb|ACY70102.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAVQLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYVLGIIQAQPDRSE-------------SEIVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|256011596|gb|ACU55654.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|255984936|gb|ACU46540.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKERVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|256252414|dbj|BAH97443.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|238734196|gb|ACR55430.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSAGIRK 710
>gi|238734177|gb|ACR55413.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSFSDTTNQKAELQAIHLALQ-----DSGTEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEHLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|212674650|gb|ACJ37073.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|170778879|gb|ACB36839.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAVPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|114841712|dbj|BAF32166.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTEATNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|58220961|gb|AAW68143.1| pol protein [Human immunodeficiency virus 1]
gi|212383142|gb|ACJ25867.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K+++ E ++ + +V +
Sbjct: 592 YVDGAANRET-KMGKAGYVTDRGRQKVVTVTETTNQKTELQAIQL----ALQDSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|37221350|gb|AAQ89804.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDKGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|25166811|gb|AAN73601.1|AF484496_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1428
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 1021 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 1060
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 1061 AIYLALQDSGTEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDKVYLSWVPAHK 1120
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 1121 GIGGNEQVDKLVSSGIRKI 1139
>gi|327458355|gb|AEA76617.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKJGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|327458211|gb|AEA76545.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K+IS + ++ + +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVISLTDTTNQKTELQAINL----ALQDSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIR 557
>gi|325635979|gb|ADZ33764.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLIDTTNQKTELKAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIGKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|324121160|gb|ADY18633.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKIVSLNGTTNQKTELHAIYLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 655 VTDSQYAIGIIQAQPDRSE-------------SEIVNWIIEKLIEKEKIYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|306477647|gb|ADM89198.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477473|gb|ADM89111.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|302594724|gb|ADL59550.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYALGIIQALPDKSESELVNLIIEKLIEKE-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 101 GIGGNEQVDKLVSSGIRKI 119
>gi|295314213|gb|ADF97458.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRQSKQGKAGYVTDRGRQKVVPLTETTNQKAELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288558524|dbj|BAI68319.1| polyprotein [Human immunodeficiency virus 1]
Length = 329
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 192 YVDGAASKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDRSDSEVVSQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|256011192|gb|ACU55452.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKXGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E V L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLVKKEX-----VYLXWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010691|gb|ACU55202.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIXQAQPDRXESEIVSQXIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984562|gb|ACU46353.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|255984480|gb|ACU46312.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKTVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGVRK 158
>gi|255984274|gb|ACU46209.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAXPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255708291|dbj|BAH96506.1| Pol [Human immunodeficiency virus 1]
Length = 1005
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRRKAISITDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKDKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|226348750|gb|ACO50694.1| pol protein [Human immunodeficiency virus 1]
Length = 748
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 369 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 423
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W+ H G
Sbjct: 424 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLTWVPAHKGI 470
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 471 GGNEQVDKLVSNGIRK 486
>gi|13095405|gb|AAK12258.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|14030526|gb|AAK52936.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN R EL A AL +V
Sbjct: 428 YVDGAANRETKLGKAGY---VTNKGRQKVVS--LTDTTNQRTELQAIYLALQDSGL--EV 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 481 NIVTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIKKEKVYLAWVPAHK 527
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 528 GIGGNEQVDKLVSAGIRK 545
>gi|13095419|gb|AAK12265.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095187|gb|AAK12172.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095305|gb|AAK12218.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|49574349|gb|AAT66844.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|2745748|gb|AAC97532.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEKLIEKDKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|2258475|gb|AAC71057.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DAGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891902|gb|AAG50330.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|13891866|gb|AAG50312.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|9626221|ref|NP_040563.1| reverse transcriptase [Bovine immunodeficiency virus]
gi|210708|gb|AAA91271.1| reverse transcriptase [Bovine immunodeficiency virus]
Length = 1056
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G V + + G + + MA + + +
Sbjct: 587 YTDG---GKKGKTAAAVYWCEGRTKSKVFPGTNQQAELKAICMALLDGPPKMN------I 637
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++G + + W + G K + V + W+ H G
Sbjct: 638 ITDSRYAYEGMREEPETWAREGIWLEIAKILPFKQY------------VGVGWVPAHKGI 685
Query: 132 QENEKVDRIARNA 144
N + D + A
Sbjct: 686 GGNTEADEGVKKA 698
>gi|325636816|gb|ADZ34475.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 589 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 643
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + E + KV L W+ H G
Sbjct: 644 VTDSQYA-------------LGIIQAQPDTSESELVNQIIEELIKKEKVYLAWVPAHKGI 690
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 691 GGNEQVDKLVSAGIRK 706
>gi|306477637|gb|ADM89193.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477633|gb|ADM89191.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188462|gb|ADC42705.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187547|gb|ADC42268.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSAGIRK 657
>gi|282598015|gb|ADA83262.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SQV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|256011726|gb|ACU55719.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|255984200|gb|ACU46172.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRXTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 642 GGNEKVDKLVSSGIRK 657
>gi|238635782|gb|ACR52987.1| pol protein [Human immunodeficiency virus 1]
gi|238635792|gb|ACR52996.1| pol protein [Human immunodeficiency virus 1]
gi|238635817|gb|ACR53018.1| pol protein [Human immunodeficiency virus 1]
gi|238635847|gb|ACR53044.1| pol protein [Human immunodeficiency virus 1]
gi|238635857|gb|ACR53053.1| pol protein [Human immunodeficiency virus 1]
gi|238635866|gb|ACR53061.1| pol protein [Human immunodeficiency virus 1]
gi|238635884|gb|ACR53077.1| pol protein [Human immunodeficiency virus 1]
gi|238635893|gb|ACR53085.1| pol protein [Human immunodeficiency virus 1]
gi|238635912|gb|ACR53102.1| pol protein [Human immunodeficiency virus 1]
gi|238635922|gb|ACR53111.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIQKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|148745899|emb|CAK49338.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 966
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 651 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 698 GIGGNEQVDKLVSNGIRK 715
>gi|45361123|gb|AAS59341.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIERLIEKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|39968387|ref|XP_365584.1| hypothetical protein MGG_02286 [Magnaporthe oryzae 70-15]
gi|145014147|gb|EDJ98788.1| hypothetical protein MGG_02286 [Magnaporthe oryzae 70-15]
Length = 281
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 59 EVRVRWCPGHQGIPGNDRADELAKAG 84
>gi|37934302|gb|AAO84273.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 578
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSESEIVNQVIEKLIEKD-------------KVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|13095233|gb|AAK12194.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIEKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|312601842|gb|ADQ92479.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601832|gb|ADQ92474.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|306477645|gb|ADM89197.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477643|gb|ADM89196.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187327|gb|ADC92242.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187819|gb|ADC42397.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|282598080|gb|ADA83317.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDSSESELVNQIIEKLIGKE-------------KVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|256011552|gb|ACU55632.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKTGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIRKI 718
>gi|256011486|gb|ACU55599.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011106|gb|ACU55409.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNXGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNKIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010743|gb|ACU55228.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255983952|gb|ACU46048.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|226933760|gb|ACO91946.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A L +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDXGKQKIIA---LTETTNQKAELHAI--QLALQDSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKIYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRKI 713
>gi|222428464|gb|ACM50101.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 649 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLIKKE-----KVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|125661196|gb|ABN49542.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|114841982|dbj|BAF32409.1| Pol [Human immunodeficiency virus 1]
gi|114842022|dbj|BAF32445.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|46946845|gb|AAT06635.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|13095231|gb|AAK12193.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095275|gb|AAK12208.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|902800|gb|AAB60572.1| POL polyprotein precursor [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|83026796|gb|ABB96433.1| pol protein [Human immunodeficiency virus 1]
gi|312601903|gb|ADQ92508.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601822|gb|ADQ92469.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306477749|gb|ADM89249.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|299802372|gb|ADJ52027.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|299802370|gb|ADJ52026.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|289469904|gb|ADC96607.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVXNXGRQKVVXJTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQY-------------XLGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187199|gb|ADC92179.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011562|gb|ACU55637.1| pol protein [Human immunodeficiency virus 1]
Length = 917
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELHAIHLALQ-----DSASEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIHAQPDKSESEVVSQIIEQLIKKEXVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011314|gb|ACU55513.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|226348616|gb|ACO50627.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 368 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 422
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 423 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 469
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 470 GGNEQVDKLVSAGIRK 485
>gi|186940903|dbj|BAG31043.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|186940893|dbj|BAG31034.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|167832816|gb|ACA01982.1| pol protein [Human immunodeficiency virus 1]
Length = 740
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGAXVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|170778927|gb|ACB36863.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|114841932|dbj|BAF32364.1| Pol [Human immunodeficiency virus 1]
gi|114841952|dbj|BAF32382.1| Pol [Human immunodeficiency virus 1]
gi|114842002|dbj|BAF32427.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114841942|dbj|BAF32373.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|55275227|gb|AAV49442.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|39777405|gb|AAR30984.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + + +V
Sbjct: 595 YVDGAANKETKLGKAGY---VTDKGRQKVVSITDTTNQKTELQAINLVLQ----DSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIITDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|39777415|gb|AAR30993.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|17046653|gb|AAL34680.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRDTKIGKAGYVTDKGRRKVITLTETTNQKTELQAIQLALQ-----DSGPEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|13095164|gb|AAK12163.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095132|gb|AAK12149.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13095371|gb|AAK12246.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAHPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095396|gb|AAK12254.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095277|gb|AAK12209.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13095328|gb|AAK12228.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|78172852|gb|ABB29383.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIVQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|326370771|gb|ADZ56537.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|315640861|ref|ZP_07895960.1| ribonuclease HI [Enterococcus italicus DSM 15952]
gi|315483400|gb|EFU73897.1| ribonuclease HI [Enterococcus italicus DSM 15952]
Length = 143
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 11/142 (7%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y D + GNPGP G G ++ +G S + N + + +L
Sbjct: 11 LKIYIDASTKGNPGPSGGGFMIIGEGLYVQKSFPFTQKLTNHQAEFSVLSSLLDYLLEEN 70
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + Q K K + + + ++ + + L WI
Sbjct: 71 L-----VEHTITVHTDSKVVAQAIA-KKFTKNSAFDSLVEEILIKFALFPLLFLKWIP-- 122
Query: 129 AGNQENEKVDRIARNA-AVSFK 149
+N+ D +AR A + K
Sbjct: 123 --ESQNKGADHLARQGLAKALK 142
>gi|312601923|gb|ADQ92518.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601862|gb|ADQ92488.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477639|gb|ADM89194.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477631|gb|ADM89190.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477629|gb|ADM89189.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|292658912|gb|ADE34308.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESDIVNQIIEKLIEKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|259122642|gb|ACV92611.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKAELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEKLVEKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|288187718|gb|ADC42350.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGGEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011632|gb|ACU55672.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSITDTTNQKTELQAIXL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSXGIRK 713
>gi|256011386|gb|ACU55549.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|256011354|gb|ACU55533.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V J
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNJ 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011348|gb|ACU55530.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYITDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011302|gb|ACU55507.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 603 YVDGAANRETKLGKAGY---VTNKGKQKVVSLTD---TTNQQTELQAIHLALQDSG-SEV 655
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 656 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHK 702
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 703 GIGGNEQVDKLVSAGIR 719
>gi|256011022|gb|ACU55367.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRAGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 698 GGNEXVDKLVSAGIRK 713
>gi|256252364|dbj|BAH97398.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|222428469|gb|ACM50105.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 598 YVDGAANRDTKLGKAGY---ITDRGRQKVVS--LADTTNQKTELQAIHLALQDGGP--EV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAHPDKSESELVSQIIEELIKKEKVYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 698 GIGGNEQIDKLVSAGIRK 715
>gi|296556483|gb|AAK08484.2|AF324493_3 pol polyprotein [HIV-1 vector pNL4-3]
gi|170878297|gb|ACB38949.1| pol protein [Human immunodeficiency virus 1]
gi|222428494|gb|ACM50125.1| pol protein [Human immunodeficiency virus 1]
gi|296556486|gb|AAA44988.2| pol polyprotein (NH2-terminus uncertain) [Human immunodeficiency
virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|125661176|gb|ABN49524.1| pol protein [Human immunodeficiency virus 1]
gi|125661186|gb|ABN49533.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|114841732|dbj|BAF32184.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTEATNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|47118211|gb|AAT11202.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSIDDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|39777425|gb|AAR31002.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|38491723|gb|AAR22109.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095389|gb|AAK12252.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|4388654|emb|CAA29181.1| ORF 1 [Trypanosoma brucei]
Length = 1650
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 10 HAYTDGA-CSGNPGPGGWGVLLRYKGKEKI-ISGGEKETTNNRMELMAAIKALTALKYPC 67
+TDG+ G G LL K G E + + A++
Sbjct: 1009 ELWTDGSVSLGE--KSGAAALLYRNNKLICAPKTGAGELSCSYRAECVALEIGLQRLLKW 1066
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ S + + + + + ++ L ++ G
Sbjct: 1067 LPAYRSTPSRLSIFSDSLSMLTALQTGPLAVTNPILRRLWRLLLQVQRRKIRIRLQFVFG 1126
Query: 128 HAGNQENEKVDRIARNAAV 146
H G + NE D A+ AA
Sbjct: 1127 HCGVKRNEVCDEDAKRAAD 1145
>gi|13095340|gb|AAK12234.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095348|gb|AAK12238.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETELGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095427|gb|AAK12269.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKERVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|49574276|gb|AAT66809.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G +K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGGQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|87116101|gb|ABD19632.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 645 NIVTDSQYAIGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|60652094|gb|AAX33162.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458393|gb|AEA76636.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325636645|gb|ADZ34331.1| pol protein [Human immunodeficiency virus 1]
gi|325636657|gb|ADZ34341.1| pol protein [Human immunodeficiency virus 1]
gi|325636669|gb|ADZ34351.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635740|gb|ADZ33557.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477751|gb|ADM89250.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477711|gb|ADM89230.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTDTTNQRTELQAIHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416424|gb|ADM87059.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSLTETTNQKTELHAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|289187300|gb|ADC92229.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIJ-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011260|gb|ACU55486.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVIXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|170676559|gb|ACB30423.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + +E + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQEVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|114842012|dbj|BAF32436.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114841792|dbj|BAF32238.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTEATNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|38491576|gb|AAR21978.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQKVVSLPE---TTNQKTELHAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKDRVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSKGIRK 713
>gi|13095336|gb|AAK12232.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|15281431|gb|AAK94220.1|AF361872_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIHAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13095124|gb|AAK12146.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIRLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|14030536|gb|AAK52941.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSAGIRK 545
>gi|3114555|gb|AAD03174.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSELEIVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325638556|gb|ADZ35946.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|325638515|gb|ADZ35912.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|325638505|gb|ADZ35904.1| pol protein [Human immunodeficiency virus 1]
gi|325638510|gb|ADZ35908.1| pol protein [Human immunodeficiency virus 1]
gi|325638534|gb|ADZ35928.1| pol protein [Human immunodeficiency virus 1]
gi|325638539|gb|ADZ35932.1| pol protein [Human immunodeficiency virus 1]
gi|325638561|gb|ADZ35950.1| pol protein [Human immunodeficiency virus 1]
gi|325638587|gb|ADZ35972.1| pol protein [Human immunodeficiency virus 1]
gi|325638599|gb|ADZ35982.1| pol protein [Human immunodeficiency virus 1]
gi|325638609|gb|ADZ35990.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|314933623|ref|ZP_07840988.1| EbsB protein [Staphylococcus caprae C87]
gi|313653773|gb|EFS17530.1| EbsB protein [Staphylococcus caprae C87]
Length = 130
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 13/141 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A GNPG V+++ + + + + +E N+ E A I AL +
Sbjct: 3 KIYFDAATKGNPGRSACAVVIKEESERHVFTHDLRELDNHSAEWAAMIYALEHARELNVR 62
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ S + + + K + + + + + W+
Sbjct: 63 NALLHTDSKLIEDSVNSGRVK-----NAKFKPYYD----NMKILEQSFDLMFVKWVP--- 110
Query: 130 GNQENEKVDRIARNAAVSFKN 150
+N++ ++ A+ A
Sbjct: 111 -RDKNKEANQHAQQALYKLIK 130
>gi|312601919|gb|ADQ92516.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|312601907|gb|ADQ92510.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|302594716|gb|ADL59546.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI+ P +V
Sbjct: 1 YVDGASNRETKLGKAGY---VTDRGRQKVISLTE---TTNQKAELHAIQLALQESGP-EV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 54 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSAGIR 117
>gi|288187850|gb|ADC42412.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE +D++ N
Sbjct: 642 GGNEHIDKLVSNGIRKI 658
>gi|288187682|gb|ADC42332.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + T N+ + AI +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQRVVT----LNDTTNQQAELQAIYLALQDSG-GEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011492|gb|ACU55602.1| pol protein [Human immunodeficiency virus 1]
Length = 967
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 560 YVDGAANRETKLGKAGYVTNRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 615 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 661
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 662 GGNEQVDKLVSSGIRK 677
>gi|255984744|gb|ACU46444.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGXAGYITDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|255984588|gb|ACU46366.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGGEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984574|gb|ACU46359.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 141 GIGGNEQVDKLVSNGIRK 158
>gi|238635930|gb|ACR53118.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIQKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|124106323|sp|P19560|POL_BIV29 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;
Contains: RecName: Full=Matrix protein p16; Short=MA;
Contains: RecName: Full=p2L; Contains: RecName:
Full=Capsid protein p26; Short=CA; Contains: RecName:
Full=p3; Contains: RecName: Full=Transframe peptide;
AltName: Full=p11; Contains: RecName: Full=Protease;
AltName: Full=P119; AltName: Full=Retropepsin; Contains:
RecName: Full=Reverse transcriptase/ribonuclease H;
Short=RT; AltName: Full=Exoribonuclease H; AltName:
Full=P72; Contains: RecName: Full=Integrase; Short=IN
Length = 1475
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G V + + G + + MA + + +
Sbjct: 1006 YTDG---GKKGKTAAAVYWCEGRTKSKVFPGTNQQAELKAICMALLDGPPKMN------I 1056
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++G + + W + G K + V + W+ H G
Sbjct: 1057 ITDSRYAYEGMREEPETWAREGIWLEIAKILPFKQY------------VGVGWVPAHKGI 1104
Query: 132 QENEKVDRIARNA 144
N + D + A
Sbjct: 1105 GGNTEADEGVKKA 1117
>gi|114841772|dbj|BAF32220.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|94959100|gb|ABF47490.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|37221334|gb|AAQ89797.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|5668882|gb|AAD46044.1|AF075701_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHRGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|327458391|gb|AEA76635.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458387|gb|AEA76633.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVNKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325636009|gb|ADZ33790.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTDRGRQKVIPLTDTTNQKTELQAIQLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIR 710
>gi|325635987|gb|ADZ33771.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTDRGRQKVIPLTDTTNQKTELQAIQLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIR 710
>gi|321458920|gb|EFX69980.1| hypothetical protein DAPPUDRAFT_257795 [Daphnia pulex]
Length = 143
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
KV+LYWI H G NE DR+A +
Sbjct: 88 KVNLYWIPSHVGIPGNEVADRLASEESNQL 117
>gi|312601980|gb|ADQ92546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601941|gb|ADQ92527.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601818|gb|ADQ92467.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|306477743|gb|ADM89246.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|291603749|gb|ADE20142.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010741|gb|ACU55227.1| pol protein [Human immunodeficiency virus 1]
Length = 489
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E TTN + EL A AL +
Sbjct: 245 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTE--TTNQKAELQAIHLALQDSGLEANI-- 299
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 300 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 346
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 347 GGNEQVDKLVSSGIRK 362
>gi|255984872|gb|ACU46508.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKJGKAGYVTNKGRQKVVXLNDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984694|gb|ACU46419.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984318|gb|ACU46231.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKVGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGVRK 158
>gi|238734018|gb|ACR55272.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + K+TTN + EL A AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQQVVS---LKDTTNQKAELQAIYLALQDSGV--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRKI 714
>gi|226348718|gb|ACO50678.1| pol protein [Human immunodeficiency virus 1]
Length = 701
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 370 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTSNQKTELQAIYLALQ-----DSGSEVNI 424
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 425 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 471
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 472 GGNEQVDKLVSAGIRK 487
>gi|226348650|gb|ACO50644.1| pol protein [Human immunodeficiency virus 1]
Length = 682
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 370 YVDGASNRETKLGKAGYVTDRGRQKVVHLTGTTNQKTELQAIYLALQ-----DSGLEVNI 424
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 425 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 471
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 472 GGNEQVDKLVSSGIRK 487
>gi|222428474|gb|ACM50109.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|213495605|gb|ACJ49070.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SELVSLIIEQLINKQRVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|212382687|gb|ACJ25656.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 591 YVDGAANRETKTGKAGYVTDKGRQKIATLNETTNQKAELQAIQLALQ-----DSGLEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKERIYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|158967369|gb|ABW86716.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|154284872|ref|XP_001543231.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150406872|gb|EDN02413.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1125
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 6/134 (4%)
Query: 2 DSKHLREVHAYTDGA--CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S+ +++ ++DG+ N G+G ++ K+ ++ + A
Sbjct: 831 RSQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSPMSHVFDSEAVGAC 890
Query: 60 LT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ DSS ++ + + + + QH
Sbjct: 891 RALECAVKLLPCVTEDSSNPQIWLCLDNTSVIWGIRGSAAASSNWAYNRCHELLR---QH 947
Query: 119 KVDLYWIKGHAGNQ 132
V L W GH G +
Sbjct: 948 NVGLKWAPGHMGIE 961
>gi|116518682|gb|ABJ99566.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 588 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 641 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 687
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 688 GIGGNEQVDKLVSSGIRK 705
>gi|114841972|dbj|BAF32400.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|45361113|gb|AAS59332.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221400|gb|AAQ89829.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|37221404|gb|AAQ89831.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|13095285|gb|AAK12212.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095322|gb|AAK12225.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095086|gb|AAK12131.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095273|gb|AAK12207.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|7321135|emb|CAB82218.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 603 YVDGAASRETKLGKAGYVTDRGRQKAITLTETTNQKTELHAIHLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKDRVYLSWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|13095063|gb|AAK12124.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRRKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|49574299|gb|AAT66820.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|328431|gb|AAB04037.1| pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635745|gb|ADZ33561.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325635126|gb|ADZ33035.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRENKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|312602000|gb|ADQ92555.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601876|gb|ADQ92495.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|299482815|gb|ADJ19222.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 597 YVDGAASRETKLGKAGYVTNKGRQKVVTIADTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 699 GGNEQIDKLVSAGIRK 714
>gi|270485058|gb|ACZ82302.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRDSKLGKAGYVTNKGRQKVVSLTNTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 697 GGNEKVDKLVSAGIRK 712
>gi|289186924|gb|ADC92042.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|288899120|gb|ADC67092.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|288188468|gb|ADC42708.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187680|gb|ADC42331.1| pol protein [Human immunodeficiency virus 1]
Length = 568
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|284045112|ref|YP_003395452.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283949333|gb|ADB52077.1| ribonuclease H [Conexibacter woesei DSM 14684]
Length = 133
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 19/147 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTAL 63
++ + + DG GNPGP GV++ E + E E TNN E A + L
Sbjct: 1 MK-LVVHVDGGARGNPGPAAVGVVVSTPEGEVVERRAETIGEATNNVAEYRALLLGLERA 59
Query: 64 K--YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ +V + DS V K + V +
Sbjct: 60 RALGATEVEVVNDSELVAKQVGGEYRVKHAAMRPLHAAALEALGGFEAWRVRS------- 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSF 148
+N D + A +
Sbjct: 113 -------VPRAQNADADALVNAALDAA 132
>gi|268323231|emb|CBH36819.1| hypothetical protein, containing RNase H domain [uncultured
archaeon]
Length = 213
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGGEKETTNNRMELMAAI---KALT 61
++++ DGA NPG G GV+L + IS + N + A+
Sbjct: 1 MKKIQ--FDGAAIPNPGKMGIGVVLIEDKRLIAKISQKLPDKGTNNIAEYTALLTGLTKA 58
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+++ DS V K E S
Sbjct: 59 LELGWKHIIIEGDSKLVINQVKGAW----------KINKAHLKRLHARVIKELSEFDSYA 108
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
L WI +N D +A A
Sbjct: 109 LNWIP----RNKNSAADELASKA 127
>gi|256011168|gb|ACU55440.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SELVSXIIEQLINKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|256010919|gb|ACU55316.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984580|gb|ACU46362.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|255984432|gb|ACU46288.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLXVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255983976|gb|ACU46060.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEXVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|255983938|gb|ACU46041.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|255708321|dbj|BAH96533.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSIPDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
N++VD++ +
Sbjct: 697 GGNDQVDKLVSSGIRK 712
>gi|238734253|gb|ACR55480.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 594 YVDGASNRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIYLALQDSGP-EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKIYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|170778873|gb|ACB36836.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKVGKAGYVTDKGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 543 GGNEQIDKLVSKGIR 557
>gi|114801321|gb|ABI79914.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114841962|dbj|BAF32391.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|17046823|gb|AAL34833.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAVNRETKVGKAGYVTDRGRQKVISINETTNQKTELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|13095116|gb|AAK12142.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095082|gb|AAK12130.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|4324774|gb|AAD17038.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKLGKAGYVTNKGRQKIVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKERIYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|13095413|gb|AAK12262.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGLG-V 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095137|gb|AAK12151.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095215|gb|AAK12186.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095235|gb|AAK12195.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|25167061|gb|AAN73826.1|AF484521_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANKETKLGKAGYVTDRGRQKVVCLTDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYG-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 1128 GGNEQVDKLVSSGIRKI 1144
>gi|8885976|gb|AAF80324.1|AF156846_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|16118272|gb|AAL12650.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTNRGRQKVVSLTDTTNQQTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637215|gb|ADZ34808.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|289187232|gb|ADC92195.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288899114|gb|ADC67089.1| pol protein [Human immunodeficiency virus 1]
gi|288899116|gb|ADC67090.1| pol protein [Human immunodeficiency virus 1]
gi|288899118|gb|ADC67091.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984868|gb|ACU46506.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984692|gb|ACU46418.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|294952671|ref|XP_002787406.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902378|gb|EER19202.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 664
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 25/139 (17%)
Query: 10 HAYTDGAC----SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
YTDG+ G+ G + + E + T + EL+A AL +
Sbjct: 385 IVYTDGSKFPMDDGSHRVG--AAFISHHSGEAGLYCLPSHATVQQAELVAIKMALKTINR 442
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
C V + + S+ + + ++ + W+
Sbjct: 443 RCMVAVDSKSALMSIRGDRSTTLLEEIRGLIRKTGAM-------------------FTWV 483
Query: 126 KGHAGNQENEKVDRIARNA 144
K H G NE VD +A++A
Sbjct: 484 KAHNGALYNEWVDALAKSA 502
>gi|212674712|gb|ACJ37128.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGRAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIHAQPDKSESELVNQIIEKLINKERVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSKGIRK 716
>gi|157005121|gb|ABV00817.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|156254351|gb|ABU62665.1| RNase H [Human immunodeficiency virus 1]
gi|156254353|gb|ABU62666.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSTGIRK 118
>gi|38491500|gb|AAR21910.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095201|gb|AAK12179.1| pol polyprotein [Human immunodeficiency virus 1]
gi|13095203|gb|AAK12180.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|22596399|gb|AAN03173.1|AF457070_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQRVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K ++ K+ L W+ H G
Sbjct: 651 VTDSQYALGIIHAQPDSSESELVNQIIEKLIEKD-------------KIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13891868|gb|AAG50313.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458353|gb|AEA76616.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|327458235|gb|AEA76557.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQSQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|325637188|gb|ADZ34786.1| pol protein [Human immunodeficiency virus 1]
gi|325637193|gb|ADZ34790.1| pol protein [Human immunodeficiency virus 1]
gi|325637198|gb|ADZ34794.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601891|gb|ADQ92502.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477873|gb|ADM89311.1| pol protein [Human immunodeficiency virus 1]
Length = 847
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 440 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIQLALQ-----DSGSEVNI 494
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 495 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 541
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 GGNEQVDKLVSSGIRK 557
>gi|306477761|gb|ADM89255.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477641|gb|ADM89195.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469826|gb|ADC96568.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLADTTNQXTELQAICL----ALQDSELEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + ++ +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLISKERVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 541 GIGGNEQVDKLVSNGIRKI 559
>gi|289187250|gb|ADC92204.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITNTGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VXDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|260179760|gb|ACX34546.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKVGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LEIIQAQPDKSESELVSSIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011284|gb|ACU55498.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 603 YVDGAANRETKXGKAGYVTDRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 705 GGNEQIDKLVSAGIRK 720
>gi|256010701|gb|ACU55207.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 591 YVDGAANRETKSGKAGYVTDRGRQKVVP----LTDTTNQKTELEAIHLALQDSGL-EVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 693 GGNEQVDKLVSAGIRK 708
>gi|255984594|gb|ACU46369.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984390|gb|ACU46267.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|255984180|gb|ACU46162.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255984068|gb|ACU46106.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|238734186|gb|ACR55421.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGSEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + K+ L W+ H G
Sbjct: 659 VTDSQYVLGIIQAQPDQSE-------------SELVSQIIEQLIKKEKIYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 706 GGNEQVDKLVSNGIRK 721
>gi|224113659|ref|XP_002332528.1| predicted protein [Populus trichocarpa]
gi|222832640|gb|EEE71117.1| predicted protein [Populus trichocarpa]
Length = 148
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 12/136 (8%)
Query: 13 TDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ G PGP G G +LR + + S +N EL A +KA+ L C
Sbjct: 14 VDGSSLGKPGPSGIGGVLRNHHGHLLGMFSVPVGILDSNIAELRAIVKAIELLASNCLFH 73
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ H K ++ + + + H
Sbjct: 74 ------HQHLIIESDSVNAISWMNKPHNRPWKHHNLFSSVNRLKAYFGSITF----SHIF 123
Query: 131 NQENEKVDRIARNAAV 146
+ N D +A+
Sbjct: 124 RESNCMADCMAKQGVQ 139
>gi|170778855|gb|ACB36827.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAIXL----ALQDSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|170074925|ref|XP_001870636.1| ribonuclease H1 [Culex quinquefasciatus]
gi|167871986|gb|EDS35369.1| ribonuclease H1 [Culex quinquefasciatus]
Length = 121
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 35/136 (25%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V+AYT+G+ GN L Y G+ ++
Sbjct: 19 VYAYTNGSWEGNGTAAACAGLGVYFGEGHALNAIPS------------------------ 54
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA--SAQHKVDLYWIK 126
++W+ ++N WK S + VK+ + ++ +
Sbjct: 55 ---------FFIDSTKWLPGCKRNAWKLSTGEPVKHQFDLEELDRELADKSIEIKWNHVD 105
Query: 127 GHAGNQENEKVDRIAR 142
H G NE+ D +AR
Sbjct: 106 AHCGILGNERADALAR 121
>gi|114841992|dbj|BAF32418.1| Pol [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|36365417|gb|AAQ86635.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIERLIRKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|14290012|gb|AAK59197.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI KV
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSE-TKV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095259|gb|AAK12204.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKERVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|62548179|gb|AAX86732.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|77416899|sp|Q74120|POL_HV2KR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1463
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT +++
Sbjct: 1051 YTDGSCNRQSKEGKAGYITDRGRDKV---RILEQTTNQQAELEAFAMALTDSGPKANIIV 1107
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1108 --DSQYVMGIVAGQPTESE-------------SKLVNQIIEEMIKKETLYVAWVPAHKGI 1152
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1153 GGNQEVDHLVSQGIRQ 1168
>gi|71794624|emb|CAI28863.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1023 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +KV L W+ H
Sbjct: 1076 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEK-------------NKVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1123 GIGGNEQVDKLVSNGIRK 1140
>gi|312601886|gb|ADQ92500.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|301503609|gb|ADK75322.1| pol protein [Human immunodeficiency virus 1]
gi|301503616|gb|ADK75328.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRESKLGRAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NVVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|259122652|gb|ACV92620.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQTQPDKSESELVNQIIEKLVGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|289187390|gb|ADC92273.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187354|gb|ADC92255.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRKI 658
>gi|289187329|gb|ADC92243.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188265|gb|ADC42613.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|260533695|gb|ACX45098.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 593 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 632
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + KV L W+ H
Sbjct: 633 AIYLALQDSGSEVNIVTDSQYGLGIIQAQPDKSDSELVNQIIEKLIEKDKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|256011586|gb|ACU55649.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVXAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|255069232|dbj|BAH89164.1| Pol [Human immunodeficiency virus 1]
gi|255069242|dbj|BAH89173.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|158967408|gb|ABW86751.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVT---LTETTNQKAELHAIHLALQDSG--SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|157005094|gb|ABV00793.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|159503394|gb|ABW97551.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|148745897|emb|CAK49337.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|148469926|gb|ABQ65912.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|4324792|gb|AAD17056.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKLGKAGYVTNKGRQKIVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKERIYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|62548189|gb|AAX86741.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328662|gb|AAB59876.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|25166659|gb|AAN73465.1|AF484480_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A L +V
Sbjct: 1026 YVDGAANRETKLGKAGY---ITDRGRQKVVS--LPDTTNQKTELHAI--NLALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|327458255|gb|AEA76567.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|327458253|gb|AEA76566.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|326370932|gb|ADZ56677.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLINKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|306477889|gb|ADM89319.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477881|gb|ADM89315.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477707|gb|ADM89228.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288558561|dbj|BAI68337.1| polyprotein [Human immunodeficiency virus 1]
Length = 323
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + K+ + + A++ +V +
Sbjct: 192 YVDGAASRETKLGKAGYVTDRGRKKVVSLTETTNQKTELHAIYLALQ-----DSGSEVNI 246
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + E + KV L W+ H G
Sbjct: 247 VTDSQYV-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIR 308
>gi|288187612|gb|ADC42299.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSGGIRK 657
>gi|256010737|gb|ACU55225.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984920|gb|ACU46532.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAAXRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984548|gb|ACU46346.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|227133689|gb|ACP19725.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRENKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSESEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 702
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIR 717
>gi|212674686|gb|ACJ37105.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQSQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|145595869|ref|YP_001160166.1| phosphoglycerate mutase [Salinispora tropica CNB-440]
gi|145305206|gb|ABP55788.1| Phosphoglycerate mutase [Salinispora tropica CNB-440]
Length = 412
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 36/126 (28%), Gaps = 15/126 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALT- 61
R V DG GNPGP G+G +LR G + S TNN E I L
Sbjct: 3 PRVVVVEADGGSRGNPGPAGYGAVLRDPGTGEVLAERSAAIGTATNNVAEYRGLIAGLEA 62
Query: 62 -ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+V DS V + + + + V
Sbjct: 63 AVELGAAEVEARLDSKLVVEQMCGRWQIKNPGLRPLAAQAARLVDQFTA----------V 112
Query: 121 DLYWIK 126
WI
Sbjct: 113 RFTWIP 118
>gi|119508029|dbj|BAF42425.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|93210626|gb|ABF00608.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKIIPLTETTNQKAELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQTDKSESELVNQIIEQLINKERTYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|90903153|gb|ABE02165.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S ETTN + EL A AL + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVS--LPETTNQKAELHAIYLALQ--ESGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ N
Sbjct: 696 GIGGNEQIDKLVSNGIRK 713
>gi|55275167|gb|AAV49388.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSIPDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|326679|gb|AAA44325.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSQGIRK 622
>gi|29119287|gb|AAO63206.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|22596485|gb|AAN03248.1|AF457081_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095207|gb|AAK12182.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|327458247|gb|AEA76563.1| pol protein [Human immunodeficiency virus 1]
gi|327458249|gb|AEA76564.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477717|gb|ADM89233.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477515|gb|ADM89132.1| pol protein [Human immunodeficiency virus 1]
gi|306477757|gb|ADM89253.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289469864|gb|ADC96587.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289187372|gb|ADC92264.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011774|gb|ACU55743.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011718|gb|ACU55715.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLSDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSE-------------SELVNQIIEQLIKKDKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256011458|gb|ACU55585.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAINLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011024|gb|ACU55368.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGXAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|255984864|gb|ACU46504.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAAXXETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|242277455|gb|ACS91546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVCQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|170676548|gb|ACB30418.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|159031789|dbj|BAF91866.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 404 YVDGAANRETKIGKAGYVTDRGRQKVVPLKDTTNQKTELQAIYLALQ-----DSGLEVNI 458
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 459 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 505
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 506 GGNEQVDKL 514
>gi|156254365|gb|ABU62672.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANKDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|148745883|emb|CAK49330.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKTELHAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|22596565|gb|AAN03320.1|AF457089_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095110|gb|AAK12140.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13095251|gb|AAK12201.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095180|gb|AAK12170.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIQLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|55735977|gb|AAV59707.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|25166679|gb|AAN73483.1|AF484482_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I T N+ + AI +V +
Sbjct: 1026 YVDGASNRETKLGKAGYVTDRGRQKIIT----LNETTNQQTELHAIHLALQDSG-SEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVSKIIERLIGKDKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1128 GGNEQVDKLVSTGIRK 1143
>gi|13540163|gb|AAK29331.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQRAISITDTTNQKTELQAINLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLPWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSRGIRK 712
>gi|25166669|gb|AAN73474.1|AF484481_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESAVVNQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|62467709|gb|AAX83963.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|326416766|gb|ADZ73236.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416740|gb|ADZ73223.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416634|gb|ADZ73170.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|312601895|gb|ADQ92504.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477953|gb|ADM89351.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477875|gb|ADM89312.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIKQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011212|gb|ACU55462.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|256011116|gb|ACU55414.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDRGRQKXVHLTDTTNQKTELQAVYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + KV L W+ H G
Sbjct: 656 VTDSQYVLGIIQAQPDQSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 703 GGNEQVDKLVSSGIRK 718
>gi|255984510|gb|ACU46327.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984482|gb|ACU46313.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGVRK 158
>gi|255984412|gb|ACU46278.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLSDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRKI 159
>gi|255984016|gb|ACU46080.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVIXLTDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|238733896|gb|ACR55164.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|226348622|gb|ACO50630.1| pol protein [Human immunodeficiency virus 1]
Length = 768
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|226347291|gb|ACO50060.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|22596319|gb|AAN03101.1|AF457062_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K+ + E ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---ITDRGKQKVANLTETTNQKAELQAIQL----ALQDSGSEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|13095106|gb|AAK12138.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|11385868|gb|AAG34998.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 395 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 449
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 450 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 496
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 497 GGNEQVDKLVSAGVRK 512
>gi|25166981|gb|AAN73754.1|AF484513_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVISLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|348559|pir||S30483 pol polyprotein - human immunodeficiency virus type 2
Length = 656
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C G G + +++ + ++TTN + EL A + AL +++
Sbjct: 453 YVDGSCHRQSKEGKAGYV---TDRDREKTKALQQTTNQQAELEAFLLALQDSGPKANIIV 509
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H
Sbjct: 510 --DSQYVMGIVAGQPTESE-------------SKLVNQIIEEMIKKEAIYIAWVPAHKRI 554
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 555 GGNQEVDHLVSQGIRQ 570
>gi|306477891|gb|ADM89320.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477877|gb|ADM89313.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477871|gb|ADM89310.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289469832|gb|ADC96571.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKMGKAGYVTNRGRZKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VXDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011066|gb|ACU55389.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S +TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGKQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G S ++ + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQSQPDKSESELVNQIIEELIKKEKVYLTWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NEKVD++ N
Sbjct: 696 GIGGNEKVDKLVSNGIR 712
>gi|256010945|gb|ACU55329.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|256010895|gb|ACU55304.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|255984766|gb|ACU46455.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238734340|gb|ACR55556.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|222538216|gb|ACM63175.1| pol protein [Simian immunodeficiency virus]
gi|222538226|gb|ACM63184.1| pol protein [Simian immunodeficiency virus]
gi|222538236|gb|ACM63193.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + TTN + EL A + AL V +
Sbjct: 588 YVDGAANRESKQGKAGYVTDKGRQKI---RKLEGTTNQKAELEAVLLALEESGK--NVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + E + + KV L W+ H G
Sbjct: 643 VTDSQYV-------------LGIIAASPDQSDSPLVQKIIEEMTTKEKVYLAWVPAHKGI 689
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 690 GGNEEIDKL 698
>gi|170778875|gb|ACB36837.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHIALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|63098391|gb|AAY32433.1| pol protein [Human immunodeficiency virus 1]
gi|212383229|gb|ACJ25905.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ V R + K +S + T + +A +V
Sbjct: 592 YVDGAANRENKLGKAGY-VTDRGRQKIVTLSETTNQKTELQAIYLAL------QDSGSEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 692 GIGGNEQVDKLVSTGIRK 709
>gi|39777385|gb|AAR30966.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|37221256|gb|AAQ89759.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13095077|gb|AAK12128.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095399|gb|AAK12255.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|3342163|gb|AAC68656.1| Pol [Simian immunodeficiency virus]
Length = 1022
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 610 YVDGSCNRQSREGKAGYVTDRGRDK---AKPLEQTTNQQAELEAFYLALADSGPKANIIV 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 667 --DSQYVMGIIAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 712 GGNQEVDHLVSQGIRQ 727
>gi|2570321|gb|AAC97581.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1028 YVDGAANKETKLGKAGYVTDRGKQKIITIQETTNQKTELHAIQLALQ-----DSGSEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLTWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1130 GGNEQVDKLVSSGIRK 1145
>gi|327814|gb|AAB03745.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|325638544|gb|ADZ35936.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 696 GGNEQVDKLVSNGIRKI 712
>gi|325637645|gb|ADZ35173.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIRKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601872|gb|ADQ92493.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|306478351|gb|ADM89550.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHXGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306478283|gb|ADM89516.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306478181|gb|ADM89465.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGKQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477879|gb|ADM89314.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477753|gb|ADM89251.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477745|gb|ADM89247.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477741|gb|ADM89245.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y + ++ + E + KV L W+ H G
Sbjct: 496 VSDSQYAIGII-------------QAQPDKSESEIVSQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477701|gb|ADM89225.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416290|gb|ADM86992.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E + + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAIXL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288187692|gb|ADC42337.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|260533622|gb|ACX45033.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKVISLPE---TTNQKTELHAIHLALQDSG-SEV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 645 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGGNEQVDKLVSSGIRK 709
>gi|256011636|gb|ACU55674.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|255984858|gb|ACU46501.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984804|gb|ACU46474.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDRGRQKVVSITE---TTNQKTELHAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 94 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|255984264|gb|ACU46204.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRXTKJGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|226348720|gb|ACO50679.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 371 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGTEVNI 425
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 426 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKIYLAWVPAHKGI 472
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 473 GGNEQVDKLVSSGIRK 488
>gi|217038389|gb|ACJ76673.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQGQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRKI 715
>gi|117581746|gb|ABK41283.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + +G++K +S E T N+ + AI +V
Sbjct: 595 YVDGAAHRETKLGKAGY---VTDRGRQKAVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|112497792|gb|ABI20204.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETXLGKAGYVTBKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIXQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|112497842|gb|ABI20249.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|112497822|gb|ABI20231.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|114841782|dbj|BAF32229.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S E N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRRKVVSLTEA---TNQKTELHAIYLALRDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|94959110|gb|ABF47499.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|13095075|gb|AAK12127.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095415|gb|AAK12263.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095280|gb|AAK12210.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|5305343|gb|AAD41597.1|AF071473_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGPEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|60651917|gb|AAX33003.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458389|gb|AEA76634.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVNKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|319444223|gb|ADV58231.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKIVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|319444213|gb|ADV58222.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKIVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|306477713|gb|ADM89231.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469798|gb|ADC96554.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|288188448|gb|ADC42699.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188446|gb|ADC42698.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187529|gb|ADC42259.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|282598053|gb|ADA83294.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011750|gb|ACU55731.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 600 YVDGAAHRETKLGKAGYVTDRGRQKVLPLTDTTNQKTELHAIHLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|256011690|gb|ACU55701.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAINLALQ-----DSGXEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|256011584|gb|ACU55648.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++ + T R +A +V
Sbjct: 594 YVDGAANRETKLGRAGY-VTNRGRQKVISLTDTTNQKTELRAIHLAL------QDSGLEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 647 NIVTDSQYALGIJ-------------QAQPDKSESEXVNQIIEQLIKKEKVYLAWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSAGIRK 711
>gi|256010857|gb|ACU55285.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984820|gb|ACU46482.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|294880741|ref|XP_002769128.1| reverse transcriptase, putative [Perkinsus marinus ATCC 50983]
gi|239872279|gb|EER01846.1| reverse transcriptase, putative [Perkinsus marinus ATCC 50983]
Length = 1463
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 13/143 (9%)
Query: 10 HAYTDGA---CSGNPGPGGWGVLLRYKGKE-----KIISGGEKETTNNRMELMAAIKALT 61
H + DG+ SG G G GV+ + + + I+A
Sbjct: 743 HIFCDGSRIGGSGLTGRIGSGVVELAPSNKDAAVVWFSYTRLPDYATVMQGELGGIEAAA 802
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
++ + + ++ + A+ +
Sbjct: 803 NRLTSTRINPLK-----QAVIYSDSQAAIRAVVGRGKLESTSVRNARRAVERAAVSCDLV 857
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
+ W + HAG NE D +AR
Sbjct: 858 IQWTRAHAGISGNEIADTLARLG 880
>gi|148745865|emb|CAK49321.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKTELHAIQLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|63014589|gb|AAY25747.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|55275207|gb|AAV49424.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13095120|gb|AAK12144.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVGQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|17046813|gb|AAL34824.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A L +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTDKGRQKIVC---LNETTNQKAELHAI--QLALQDSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLSWVPAHKGI 701
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 702 GGNEQVDKL 710
>gi|10436141|gb|AAG16819.1| pol protein [Human immunodeficiency virus 1]
gi|300431913|gb|ADK12812.1| pol protein [Human immunodeficiency virus 1]
gi|300431923|gb|ADK12821.1| pol protein [Human immunodeficiency virus 1]
gi|300431933|gb|ADK12830.1| pol protein [Human immunodeficiency virus 1]
gi|300431943|gb|ADK12839.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKIVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|25167051|gb|AAN73817.1|AF484520_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1436
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1029 YVDGAANRETKSGKAGYVTDRGRQKVVTLTNTTNQQTELQAINLALQ-----DSGLEVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1084 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1131 GGNEQVDKLVSNGIRRI 1147
>gi|306477883|gb|ADM89316.1| pol protein [Human immunodeficiency virus 1]
Length = 847
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 440 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 494
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 495 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 541
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 GGNEQVDKLVSSGIRK 557
>gi|306477807|gb|ADM89278.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477805|gb|ADM89277.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306416452|gb|ADM87073.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQQTELHAVHLALQDSG--SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIR 557
>gi|260533715|gb|ACX45116.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQQTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + + KV L W+ H
Sbjct: 646 NIVTDSQYA--------LGIIQAQPDRSDSELVNKIIEQLIGKD-----KVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|260179778|gb|ACX34555.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKVGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSSIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011740|gb|ACU55726.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLXVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|255984544|gb|ACU46344.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQXTELQAIHLALQ-----DSELEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKXKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984246|gb|ACU46195.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|170778861|gb|ACB36830.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALL-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|158967319|gb|ABW86671.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|94959080|gb|ABF47472.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIR 717
>gi|13095213|gb|AAK12185.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQGE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095292|gb|AAK12215.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|62548199|gb|AAX86750.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|45359675|gb|AAS59072.1| pol protein [synthetic construct]
Length = 727
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTNTTNQKTQLQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|29367071|gb|AAO22466.1| pol protein [Simian immunodeficiency virus]
Length = 1012
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I +ETTN + EL A + AL KV +
Sbjct: 610 YVDGAANRVSKEGKAGYVTSRGKEKVIA---IEETTNQKAELQAILLALKDSGP--KVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S S + N + + ++ V L W+ H G
Sbjct: 665 VTDSQYAMGIIS-------------SSPEISDNPIVNQIIEQMISKEAVYLNWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 712 GGNEEEDKLVSRGIRQ 727
>gi|87116062|gb|ABD19597.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 591 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELQAIQL----ALQDSGSEV 643
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 644 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 691 GIGGNEQVDKLVSNGIR 707
>gi|78172842|gb|ABB29374.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|60651967|gb|AAX33048.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDESESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|326370723|gb|ADZ56494.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVALTDTTNQKTELQAVHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635728|gb|ADZ33547.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPNKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478099|gb|ADM89424.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+ S +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTNKGKQKVTS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011204|gb|ACU55458.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGVEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYV-------------LGIIQAQPDKSESXLVNQIIEQLIKKERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 706 GGNEQVDKLVSTGIRK 721
>gi|170778869|gb|ACB36834.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAXPDKSESEXVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|156254381|gb|ABU62680.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|145616793|ref|XP_361257.2| hypothetical protein MGG_10940 [Magnaporthe oryzae 70-15]
gi|145022913|gb|EDK06618.1| hypothetical protein MGG_10940 [Magnaporthe oryzae 70-15]
Length = 504
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 282 EVRVRWCPGHQGIPGNDRADELAKAG 307
>gi|114430713|dbj|BAF31523.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|108860376|dbj|BAE95900.1| Pol [Human immunodeficiency virus 1]
gi|108860386|dbj|BAE95909.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|18699214|gb|AAL78464.1|AF413997_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 182 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 236
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 237 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 283
Query: 132 QENEKVDRIARNAAV 146
NE+ D++
Sbjct: 284 GGNEQADKLVSAGIR 298
>gi|25166961|gb|AAN73736.1|AF484511_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRKI 1144
>gi|82571407|gb|ABB84164.1| pol protein [Human immunodeficiency virus 1]
gi|212383346|gb|ACJ25951.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + G + A++ +V +
Sbjct: 592 YVDGAANRDTKLGKAGYVTDKGRQKIVSLTGTTNQKAELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIGQLINKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|130635|sp|P11368|POL_IPMA RecName: Full=Putative Pol polyprotein; Contains: RecName:
Full=Integrase; Short=IN; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
Contains: RecName: Full=Integrase; Short=IN
Length = 867
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ G G + K++S E + +E + ++ L
Sbjct: 458 IVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPRMVECLVVLEVLKTFLE--P 506
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + +DS YV + W + + ++ V + ++ H
Sbjct: 507 LNIVSDSCYVVNAVNLLEGGWSD------KPSSRVANIFQQIQLVLLSRSPVYITHVRAH 560
Query: 129 AGNQ-------ENEKVDR 139
+G N+ D+
Sbjct: 561 SGLPTSAPWLSGNDLADK 578
>gi|328834506|gb|AEB52908.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAICLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESQLVNQIIEKLIEKDKIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601844|gb|ADQ92480.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312601824|gb|ADQ92470.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477627|gb|ADM89188.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------KVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIRK 558
>gi|288187708|gb|ADC42345.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESALVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|282598033|gb|ADA83278.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SQV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 653 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 700 GIGGNEQVDKLVSNGIRK 717
>gi|256011772|gb|ACU55742.1| pol protein [Human immunodeficiency virus 1]
Length = 952
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 545 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELXAIQJALQ-----DSGXEVNI 599
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 600 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 646
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 647 GGNEQVDKLVSTGIRK 662
>gi|256011008|gb|ACU55360.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIISQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|256010679|gb|ACU55196.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 705 GGNEQVDKLVSNGIRK 720
>gi|255984844|gb|ACU46494.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGVEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 143 GGNEKVDKLVSAGIRK 158
>gi|255984638|gb|ACU46391.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAVHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYVLGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984596|gb|ACU46370.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|229661930|gb|ACQ84383.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSHIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|224087451|ref|XP_002308172.1| predicted protein [Populus trichocarpa]
gi|222854148|gb|EEE91695.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 23/156 (14%)
Query: 2 DSKHLREVHAY-----------TDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTN 48
+SK+ R V + DG+ G GP G G +LR I S +
Sbjct: 514 NSKNQRVVVVWSPLMLNSFKWNVDGSSLGKSGPSGIGGVLRNHNGIILGIFSLSVGILDS 573
Query: 49 NRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
N EL A +KA+ + C++ + H ++ +
Sbjct: 574 NVAELKAVVKAIELSAFNCRLH------HKHIIIESDSANVISWMNSPHNRPWRHHNLFS 627
Query: 109 MKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
AS + H+ + N D +A+
Sbjct: 628 SIQRAASCFGSLTFT----HSLRESNHMADHMAKQG 659
>gi|160337090|gb|ABX25835.1| pol protein [Feline immunodeficiency virus]
Length = 1148
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G P + + + E +N + E+MA + AL A ++
Sbjct: 623 YIDGGRKKGQPARAAY------WTDKGRWEVMQLEGSNQKAEIMALLMALKAGGKEMNII 676
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS Y+ K + E + + + W+ GH G
Sbjct: 677 --TDSQYIINVL--------------KQKPDMMEGIWQEVLEEMEKKTGLYIDWVPGHKG 720
Query: 131 NQENEKVDRI 140
N + D++
Sbjct: 721 IPGNMEADQL 730
>gi|57901109|gb|AAW57873.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|38491668|gb|AAR22060.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---ITDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 652 NIVTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIEKE-----KVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|37221344|gb|AAQ89801.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221242|gb|AAQ89752.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQVIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLXSAGIRK 657
>gi|13095096|gb|AAK12135.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 558
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|22532142|gb|AAM97853.1|AF460974_2 pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 703
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIR 718
>gi|8218027|emb|CAB92787.1| POL polyprotein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRKI 720
>gi|13095297|gb|AAK12217.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|14030528|gb|AAK52937.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSTGIRK 545
>gi|85700605|gb|ABC74713.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKIVSLSETTNQKAELQAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPGKSESELVNQIIEQLIKKERVYLPWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|68522115|gb|AAY98704.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGPEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE VD++ N
Sbjct: 698 GIGGNELVDKLVSNGIRK 715
>gi|60652114|gb|AAX33180.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|60652124|gb|AAX33189.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKIISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|326416900|gb|ADZ73303.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYVTDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEMVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|325637613|gb|ADZ35145.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601961|gb|ADQ92537.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|289449307|dbj|BAI77505.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GXGGNEQVDKLVSSGIRK 713
>gi|260533685|gb|ACX45089.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-AEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256252260|dbj|BAH97515.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S + ++ + +V +
Sbjct: 595 YVDGAANRETKI-GRAGYVTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|226348694|gb|ACO50666.1| pol protein [Human immunodeficiency virus 1]
Length = 749
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVALADTTNQKTELQAIYLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|167833351|gb|ACA02338.1| pol protein [Human immunodeficiency virus 1]
Length = 707
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+K +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGKQKVITXTETTNQKTELHAIHLALK-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNXIIEELIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|13095171|gb|AAK12166.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHR 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|62548169|gb|AAX86723.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|13891852|gb|AAG50305.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458369|gb|AEA76624.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|327458367|gb|AEA76623.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|319429309|gb|ADV56928.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++KIIS E TTN + EL A AL +
Sbjct: 540 YVDGAANRETRI-GRAGYVTDRGRQKIISLTE--TTNQKTELQAIYLALQDSGSEANI-- 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|313661069|dbj|BAJ41098.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 698 GGNEQVDRLVSAGVRK 713
>gi|312602030|gb|ADQ92569.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|312601945|gb|ADQ92529.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|312601811|gb|ADQ92464.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKSGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|312601795|gb|ADQ92457.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTNTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|312601785|gb|ADQ92452.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|306477939|gb|ADM89344.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416180|gb|ADM86937.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAXSRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSDSDVVNQIIEELIKKDRVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|262348263|gb|ACY56356.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + K+ L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIRKDKIYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIR 710
>gi|289187213|gb|ADC92186.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|263200958|gb|ACY70061.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|256011758|gb|ACU55735.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|256011466|gb|ACU55589.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011388|gb|ACU55550.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|255983984|gb|ACU46064.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|242277457|gb|ACS91547.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVCQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|195409382|gb|ACF95949.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSXGIRK 712
>gi|36365462|gb|AAQ86675.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|13095237|gb|AAK12196.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|13095342|gb|AAK12235.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095108|gb|AAK12139.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 558
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|325637685|gb|ADZ35208.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637669|gb|ADZ35194.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637661|gb|ADZ35187.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637605|gb|ADZ35138.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|322712945|gb|EFZ04518.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 721
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + WI GH NE+ D +A+
Sbjct: 669 HGSIHVRWIPGHTDIPGNEQADSLAKAG 696
>gi|306477929|gb|ADM89339.1| pol protein [Human immunodeficiency virus 1]
gi|306478017|gb|ADM89383.1| pol protein [Human immunodeficiency virus 1]
gi|306478071|gb|ADM89410.1| pol protein [Human immunodeficiency virus 1]
gi|306478077|gb|ADM89413.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306416406|gb|ADM87050.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASREIKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIVQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|206570695|gb|ACI12960.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNLVIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011118|gb|ACU55415.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIHLALQ-----DSGSXVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 656 VTDSQYALGIXQAQPDQSE-------------SQLVNQIIEQLIRKEKIYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIRK 718
>gi|255984518|gb|ACU46331.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|238734246|gb|ACR55474.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGVRKI 711
>gi|238734148|gb|ACR55387.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLVQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|222538259|gb|ACM63211.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + TTN + EL A + AL V +
Sbjct: 588 YVDGAANRESKQGKAGYVTDRGRQKI---RKLEGTTNQKAELEAVLLALEESGK--NVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + E + + KV L W+ H G
Sbjct: 643 VTDSQYV-------------LGIIAASPDQSDSPLVQKIIEEMTTKEKVYLAWVPAHKGI 689
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 690 GGNEEIDKL 698
>gi|222538206|gb|ACM63166.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + TTN + EL A + AL V +
Sbjct: 588 YVDGAANRESKQGKAGYVTDRGRQKI---RKLEGTTNQKAELEAVLLALEESGK--NVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + E + + KV L W+ H G
Sbjct: 643 VTDSQYV-------------LGIIAASPDQSDSPLVQKIIEEMTTKEKVYLAWVPAHKGI 689
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 690 GGNEEIDKL 698
>gi|159503375|gb|ABW97536.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|156048334|ref|XP_001590134.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980]
gi|154693295|gb|EDN93033.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 20/147 (13%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMA--AIKALTALK 64
+ YTD + + L G I+ + E + + + +
Sbjct: 85 NTITIYTDASST-----------LEGIGIGIGIAVILPNGRISHQETINIGVNQLVYNGE 133
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQ----NGWKTSDKKTVKNIDLWMKFVEASAQHK- 119
V ++ + + +++ KT ++ + + Q+K
Sbjct: 134 LLGVVKAIEYANSIAQPGNKFKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKG 193
Query: 120 --VDLYWIKGHAGNQENEKVDRIARNA 144
+ L W+ GH Q NE D +A+ A
Sbjct: 194 AEISLNWVPGHTSVQGNELADSLAKEA 220
>gi|63014609|gb|AAY25765.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37677755|gb|AAQ97435.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQARPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|37221446|gb|AAQ89852.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|37221444|gb|AAQ89851.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|13095089|gb|AAK12132.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDMGRQKVVSITDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|8885986|gb|AAF80329.1|AF156851_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1018
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 613 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 667
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 668 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 714
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 715 GGNEQVDKLVSAGIR 729
>gi|71794605|emb|CAI28845.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIEKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|327458373|gb|AEA76626.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVS---IPDTTNQKTELQAILLALQDSGI--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|326370814|gb|ADZ56573.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|326370743|gb|ADZ56512.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|326370622|gb|ADZ56405.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638381|gb|ADZ35799.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637637|gb|ADZ35166.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637590|gb|ADZ35126.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 599 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 701 GGNEQIDKLVSAGIRK 716
>gi|325637585|gb|ADZ35122.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325637538|gb|ADZ35082.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325637521|gb|ADZ35068.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325637516|gb|ADZ35064.1| pol protein [Human immunodeficiency virus 1]
gi|325637533|gb|ADZ35078.1| pol protein [Human immunodeficiency virus 1]
gi|325637595|gb|ADZ35130.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325637511|gb|ADZ35060.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325637492|gb|ADZ35044.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325636945|gb|ADZ34582.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 598 YVDGAASRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 700 GGNEQIDKLVSAGIRK 715
>gi|325636572|gb|ADZ34270.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|322782100|gb|EFZ10335.1| hypothetical protein SINV_09428 [Solenopsis invicta]
Length = 225
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L WI H G NEK D A+ A+ S
Sbjct: 1 MNNLKVTLVWIPAHVGIAGNEKADETAKEASRS 33
>gi|312601884|gb|ADQ92499.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478115|gb|ADM89432.1| pol protein [Human immunodeficiency virus 1]
gi|306478117|gb|ADM89433.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477709|gb|ADM89229.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288558545|dbj|BAI68329.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 245 NIVTDSQYA-------------LGIIQAQPDXSESEVVNQIIEELINKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 292 GIGGNEQVDKL 302
>gi|288188487|gb|ADC42717.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRKI 658
>gi|256011460|gb|ACU55586.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 605 YVDGAANRETKLGKAGYVTNRGRQKVVS---IPDTTNQKTELQAILLALQDSGI--EVNI 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 707 GGNEQVDKLVSTGIRK 722
>gi|256010785|gb|ACU55249.1| pol protein [Human immunodeficiency virus 1]
Length = 964
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 557 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 611
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 612 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 658
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 659 GGNEQVDKLVSNGIRK 674
>gi|255984800|gb|ACU46472.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYAIGII-------------QAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984450|gb|ACU46297.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|238734331|gb|ACR55548.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGVIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|238733801|gb|ACR55081.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|192335107|gb|ACF04089.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|170778867|gb|ACB36833.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|49182266|gb|AAT57633.1| pol protein [Simian immunodeficiency virus]
Length = 815
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G G + ++ I ++ A+K KV +
Sbjct: 515 YVDGAASRDSKEGKAGYVTDSGKEKVIGLSDTTNQKAELQAMLLALKESGP-----KVNI 569
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV+ + N + + ++ V L W+ H G
Sbjct: 570 VTDSQYVYGILIG-------------NPTDTTNQIVEEIIQQLLSKEAVYLAWLPAHKGI 616
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 617 GGNEQVDKLVSQGIR 631
>gi|62822731|gb|AAY15129.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 521
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A AL KV +
Sbjct: 408 YTDGSCNRQSKEGKAGYVTDRGRDKV---RVLEQTTNQQAELEAFAMALADSGP--KVNI 462
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + + V + W+ H G
Sbjct: 463 IVDSQYVMGIVADQPTESE-------------SKIVNQIIEDMIKKEAVYIAWVPAHKGI 509
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 510 GGNQEVDHL 518
>gi|37677765|gb|AAQ97444.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQARPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|13095079|gb|AAK12129.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITGTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAHPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325638391|gb|ADZ35807.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477959|gb|ADM89354.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|255984824|gb|ACU46484.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984790|gb|ACU46467.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984708|gb|ACU46426.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984192|gb|ACU46168.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIRK 657
>gi|222428618|gb|ACM50224.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|159503429|gb|ABW97578.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|156254363|gb|ABU62671.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKMGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSTGIRK 118
>gi|3002851|gb|AAD03209.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1452
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1045 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 1099
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1100 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKEKVYLAWVPAHKGI 1146
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 1147 GGNEKVDKLVSTGIRK 1162
>gi|326416738|gb|ADZ73222.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|325636592|gb|ADZ34287.1| pol protein [Human immunodeficiency virus 1]
gi|325636616|gb|ADZ34307.1| pol protein [Human immunodeficiency virus 1]
gi|325636628|gb|ADZ34317.1| pol protein [Human immunodeficiency virus 1]
gi|325636640|gb|ADZ34327.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635617|gb|ADZ33451.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|312601783|gb|ADQ92451.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 642 GGNEQVDRLVSAGIRK 657
>gi|260103572|gb|ACX31803.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 595 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIR 711
>gi|302890705|ref|XP_003044236.1| hypothetical protein NECHADRAFT_55208 [Nectria haematococca mpVI
77-13-4]
gi|256725157|gb|EEU38523.1| hypothetical protein NECHADRAFT_55208 [Nectria haematococca mpVI
77-13-4]
Length = 703
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 3 SKHLREVHAYTDGACSGNPG---PGGWGVLLRYKG------------KEKIISGGEKETT 47
R+V Y DGAC+ N GW V+ G ++K G + T
Sbjct: 317 RNDPRKVLTYADGACTNNGQLEPSAGWAVVCGTPGNDDKSCIVSGRLEDKGPFGDDSVAT 376
Query: 48 NNRMELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVK 103
+NR EL AAI L + +++ TDS+Y+ G + W K W + GWKT VK
Sbjct: 377 SNRAELRAAIAVLRLCDWRDQGYDGIVIATDSTYLVDGATGWAKGWVRKGWKTRTGGNVK 436
Query: 104 NIDLWMKFV-EASAQHKVDLYWIKGHAGNQEN 134
N DLW + E H L + N
Sbjct: 437 NKDLWDLLLGEVERWHHQGLRVDLWKIPRELN 468
>gi|256011026|gb|ACU55369.1| pol protein [Human immunodeficiency virus 1]
Length = 913
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSE-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 650 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 697 GIGGNEQVDKLVSAGIRK 714
>gi|256010951|gb|ACU55332.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984958|gb|ACU46551.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTDRGRQKVVSLTGTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984700|gb|ACU46422.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984664|gb|ACU46404.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANREXKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNXIIEQLIKKEKVYLXWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984522|gb|ACU46333.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984508|gb|ACU46326.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R K J+ + T + +A +V
Sbjct: 41 YVDGAANRETKLGKAGY-VTDRGXQKVVSJTDTTNQQTELQAIHLAL------QDSGLEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSXGIRK 158
>gi|224109036|ref|XP_002195641.1| PREDICTED: similar to pol-like protein ENS-3, partial [Taeniopygia
guttata]
Length = 742
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 11 AYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETTNN-RMELMAAIKALTALKYPCK 68
+TDG+C W + + + GE ++ ++ + + + K
Sbjct: 350 LFTDGSCRIVGMNQKWKAAVWSPTRRVAEATEGEGGSSQFAELKAVQLALDIAEREKCPK 409
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ LYTDS V W+++W++ W+ K + + W + V + + H
Sbjct: 410 LYLYTDSWMVANALWGWLERWKEANWQHR-GKPIWAAEEWKDIATRVEKLPVKVRHVDAH 468
Query: 129 AGN-------QENEKVDRIARNAAVSF 148
Q N++VD+ A+
Sbjct: 469 VPRSRANEEQQNNQQVDQAAKIGVSKI 495
>gi|217038379|gb|ACJ76664.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 655 VTDSQYALGIIQGQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|159503384|gb|ABW97543.1| pol protein [Human immunodeficiency virus 1]
Length = 952
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 545 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 599
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 600 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 646
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 647 GGNEQVDKLVSSGIRK 662
>gi|87245418|gb|ABD34905.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGVRK 715
>gi|37221414|gb|AAQ89836.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|15209253|emb|CAC51032.1| POL protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDKGRQKVVT----LTETTNQKTELEAIHLALQDSGL-EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|4324880|gb|AAD17144.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGAEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1122 GGNEQVDKLVSSGIRK 1137
>gi|13095126|gb|AAK12147.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095411|gb|AAK12261.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|25166951|gb|AAN73727.1|AF484510_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVISLTDTTNQQTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLINKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|62733846|gb|AAX95955.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550301|gb|ABA93098.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1731
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ + G GV+L + +E++ + +N E A +
Sbjct: 1207 MPEEKMEYWTMHFDGSKRLSG--AGAGVVLIFPTRERLSYVLWIHFSASHNVAEYEALLH 1264
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T++++ V+ + +E +
Sbjct: 1265 GLRIAISLGIQRLIVRGDSQLVVNQVMKEWSCL--DDNMTANRQEVRKLKDKFDGLELT- 1321
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1322 -----------HVLRHNNEAADRLAN 1336
>gi|9247192|gb|AAA91923.2| pol protein [Simian immunodeficiency virus]
Length = 1057
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ E+ S + + + V
Sbjct: 635 YVDGAASKVTKLGKAGY-------LSERGKSRIRELENTTNQQAELTAVKMALEDSGENV 687
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV T+ + + + + +V L W+ H
Sbjct: 688 NIVTDSQYVMNIL-------------TACPQESNSPLVEQIIQALMKKRQVYLQWVPAHK 734
Query: 130 GNQENEKVDRIARNAAVSF 148
G N ++D++
Sbjct: 735 GIGGNTEIDKLVSKGIRQI 753
>gi|325638604|gb|ADZ35986.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVTPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|325115903|emb|CBZ51457.1| putative ribonuclease H [Neospora caninum Liverpool]
Length = 740
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ V+ ++GH+GN NEK D +A A
Sbjct: 696 AWGGRGTVEFMLVRGHSGNYGNEKADELACQGAT 729
Score = 33.7 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 7 REVHAYTDGACSGNPG 22
R V+ YTDGAC N
Sbjct: 439 RIVYIYTDGACRANGR 454
>gi|312601826|gb|ADQ92471.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478033|gb|ADM89391.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306478025|gb|ADM89387.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477961|gb|ADM89355.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477565|gb|ADM89157.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LADTTNQKAELQAVHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV G + ++ + + + KV L W+ H
Sbjct: 494 NIVMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288187571|gb|ADC42279.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGVEVSI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011746|gb|ACU55729.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTNKGRQKVVSITDTTNQKXELQAICL----ALQDSGLEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSTGIRK 715
>gi|256011654|gb|ACU55683.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|256011270|gb|ACU55491.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKAELQAXYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 697 GGNEKVDKLVSEGIR 711
>gi|255984894|gb|ACU46519.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRXKVVXXTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984214|gb|ACU46179.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984132|gb|ACU46138.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255983948|gb|ACU46046.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255708261|dbj|BAH96479.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|226348742|gb|ACO50690.1| pol protein [Human immunodeficiency virus 1]
Length = 607
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 250 YVDGAANRDTKIGKAGYITDRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGLEVNI 304
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 305 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 351
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 352 GGNEQVDKLVSSGIRK 367
>gi|242801861|ref|XP_002483856.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717201|gb|EED16622.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 242
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + + + W+ GHA ENE D A+ A S
Sbjct: 58 WPLRERLPYTKSSSIQIRWVPGHAKIPENEAADLAAKQGAAS 99
>gi|156254379|gb|ABU62679.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAV 146
NE+VDR+
Sbjct: 103 GGNEQVDRLVSAGIR 117
>gi|116518642|gb|ABJ99530.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|87245408|gb|ABD34896.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGVRK 715
>gi|62822733|gb|AAY15130.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 530
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A AL KV +
Sbjct: 418 YTDGSCNRQSKEGKAGYVTDRGRDKV---RVLEQTTNQQAELEAFAMALADSGP--KVNI 472
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + + V + W+ H G
Sbjct: 473 IVDSQYVMGIVADQPTESE-------------SKIVNQIIEDMIKKEAVYIAWVPAHKGI 519
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 520 GGNQEVDHL 528
>gi|57869543|gb|AAW57596.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLAE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESGLVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|45361166|gb|AAS59370.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|38491890|gb|AAR22258.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|22596410|gb|AAN03182.1|AF457072_2 pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN R EL A AL +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKIVP---LTETTNQRTELHAIYLALQDSGL--EVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIGKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|17352345|gb|AAL01564.1| pol [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 594 YVDGAANRETKRGKAGYVTDRGRXKVVALTETTNQKTELQAIHLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDTSESELVNQIIEKLIGKE-------------RVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 696 GGNEQIDKLVSNGIRK 711
>gi|6651472|gb|AAF22320.1|AF193276_2 pol polyprotein [HIV-1 CRF03_AB]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRE 713
>gi|62997598|gb|AAY24654.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|328834217|gb|AEB52651.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++ E T N+ + AI +V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVPLTE---TTNQKTELHAIHLALQDSG-SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDSSESEVVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|328834140|gb|AEB52583.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVRQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|326416722|gb|ADZ73214.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSESEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 ITDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|325635527|gb|ADZ33373.1| pol protein [Human immunodeficiency virus 1]
gi|325635565|gb|ADZ33406.1| pol protein [Human immunodeficiency virus 1]
gi|325635572|gb|ADZ33412.1| pol protein [Human immunodeficiency virus 1]
gi|325635579|gb|ADZ33418.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325635512|gb|ADZ33360.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|313661079|dbj|BAJ41107.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 698 GGNEQVDRLVSAGVRK 713
>gi|306478121|gb|ADM89435.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477957|gb|ADM89353.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477721|gb|ADM89235.1| pol protein [Human immunodeficiency virus 1]
gi|306477949|gb|ADM89349.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477703|gb|ADM89226.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187562|gb|ADC42275.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011666|gb|ACU55689.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKAELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYG-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|256011130|gb|ACU55421.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKXKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|256011054|gb|ACU55383.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKIYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|255984018|gb|ACU46081.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVT---LTDTTNQRTELQAIYLALQDSGL--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|229661940|gb|ACQ84392.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|186940933|dbj|BAG31070.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|156254345|gb|ABU62662.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVVSIADTTNQKTELQAIYLALQ-----DSESEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 103 GGNEQIDKLVSSGIRK 118
>gi|117581782|gb|ABK41315.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 696 GIGGNEQIDKLVSSGIRK 713
>gi|57901070|gb|AAW57838.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|38491480|gb|AAR21892.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+KII+ E T N+ + AI P +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDKGKQKIIALTE---TTNQKAELHAIHLALQDSRP-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE++D++ +
Sbjct: 695 GIGGNEQIDKLVSSGIRKI 713
>gi|326370590|gb|ADZ56378.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRHKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGVRK 712
>gi|325637629|gb|ADZ35159.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601834|gb|ADQ92475.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTNTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|311085985|gb|ADP66067.1| ribonuclease H [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
Length = 71
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
H V +W+K H G+ ENE+ D IAR +A +
Sbjct: 30 HLVTWFWVKAHIGHLENERCDMIARQSAKN 59
>gi|306477951|gb|ADM89350.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477947|gb|ADM89348.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288188527|gb|ADC42737.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|288187856|gb|ADC42415.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQMIEQLIRKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011570|gb|ACU55641.1| pol protein [Human immunodeficiency virus 1]
Length = 962
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 555 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAINLALQ-----DSGAEVNI 609
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 610 VTDSQYAMGII-------------QAQPDXSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 656
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 657 GGNEQVDKLVSTGIRK 672
>gi|256010889|gb|ACU55301.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 698 GGNEKVDKLVSAGIR 712
>gi|255984890|gb|ACU46517.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984154|gb|ACU46149.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|256252270|dbj|BAH97524.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S + ++ + KV +
Sbjct: 595 YVDGAANRETKI-GRAGYVTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLKVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|226348730|gb|ACO50684.1| pol protein [Human immunodeficiency virus 1]
Length = 725
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V L
Sbjct: 374 YVDGAANRETKTGKAGYVTDRGRQKVITLTDTTNQKTELQAILLALQ-----DSGLEVNL 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|222428276|gb|ACM49951.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSIPDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SEVVNQIIEQLITKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|242825693|ref|XP_002488491.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712309|gb|EED11735.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 360
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + V + W+ GH ENE D A+ A S
Sbjct: 61 WPLRERLPHTKSGSVQIRWVPGHTKIPENEAADSAAKEGAAS 102
>gi|212674625|gb|ACJ37051.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELQAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|170778863|gb|ACB36831.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGXQKVVSLTDTTNQKTELQAIXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|156254419|gb|ABU62699.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 103 GGNEQVDKLVSSGIRK 118
>gi|57869570|gb|AAW57620.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|14030512|gb|AAK52929.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSAGIRK 545
>gi|13095294|gb|AAK12216.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|17025730|gb|AAK96028.1| pol protein [Human immunodeficiency virus 1]
Length = 559
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 431 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 532
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 533 GGNEQVDKLVSNGIRK 548
>gi|17025732|gb|AAK96029.1| pol protein [Human immunodeficiency virus 1]
Length = 559
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 431 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLKVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 532
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 533 GGNEQVDKLVSNGIRK 548
>gi|328444|gb|AAA83392.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458385|gb|AEA76632.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGRAGY---VTDRGRQKVVS--LADTTNQKTELQAIYLALQDSG--SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIHAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|325634746|gb|ADZ32707.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|325634714|gb|ADZ32679.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|324121170|gb|ADY18642.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLDETTNQKTELHAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIRKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGVRK 713
>gi|312602019|gb|ADQ92564.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|306478245|gb|ADM89497.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 302 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 356
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 357 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 403
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 404 GGNEQVDRLVSTGIRK 419
>gi|306478205|gb|ADM89477.1| pol protein [Human immunodeficiency virus 1]
gi|306478213|gb|ADM89481.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTNKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478173|gb|ADM89461.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477715|gb|ADM89232.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|301503644|gb|ADK75351.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLKVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|288188474|gb|ADC42711.1| pol protein [Human immunodeficiency virus 1]
Length = 573
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187651|gb|ADC42317.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGKEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011664|gb|ACU55688.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256011110|gb|ACU55411.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|256011080|gb|ACU55396.1| pol protein [Human immunodeficiency virus 1]
Length = 937
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + ++K++S + T N+ + AI +V
Sbjct: 598 YVDGAANRZTKLGKAGY---VTDRXRQKVVSLTD---TTNQXTELQAIHLALQDSG-SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 697
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 698 GIGGNEQVDKL 708
>gi|212674703|gb|ACJ37120.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQRVVSLTDTTNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGILQSQPDRSE-------------SDLVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|157005111|gb|ABV00808.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKMGKAGYVTSRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|159503411|gb|ABW97564.1| pol protein [Human immunodeficiency virus 1]
Length = 934
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 527 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 581
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 582 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 628
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 629 GGNEQVDKLVSSGIRK 644
>gi|116518652|gb|ABJ99539.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKVGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 702 GGNEQVDKLVSNGIR 716
>gi|119507321|dbj|BAF42544.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNQGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|108860416|dbj|BAE95936.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYVLGIIQAQPDRSE-------------SELVNQIIERLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|94959090|gb|ABF47481.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIR 717
>gi|36365399|gb|AAQ86619.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|13095150|gb|AAK12157.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGHVTDKGRQKVVSITDTTNQKTELQAIHLALQGSGL-----EVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|1465779|gb|AAB05599.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|885609|gb|AAC55684.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|62195122|gb|AAM81782.2| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIAR 142
NE+VD++ R
Sbjct: 697 GGNEQVDKLVR 707
>gi|327458223|gb|AEA76551.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ + +G++K+IS + T N+ + AI P +V
Sbjct: 441 YVDGAANRENXLGKAGY---VTDRGRQKVISITD---TTNQKTELQAIYLALQDSGP-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + E + KV L W+ H
Sbjct: 494 NVVTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKXKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSXGIRK 558
>gi|325637653|gb|ADZ35180.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SEIVNQIIEQLIRKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325636597|gb|ADZ34291.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325634738|gb|ADZ32700.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|325634722|gb|ADZ32686.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIRK 714
>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
Length = 246
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ H G NE D +A AA
Sbjct: 89 AYVQNLDVVIVWVPSHVGILGNETADLLAGEAARQ 123
>gi|306478179|gb|ADM89464.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|306478161|gb|ADM89455.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288558543|dbj|BAI68328.1| polyprotein [Human immunodeficiency virus 1]
Length = 325
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K +S E T N+ + AI +V
Sbjct: 192 YVDGAASRETKLGKAGY---VTDRGRQKXVSLTE---TTNQKTELHAIHLALQDSG-SEV 244
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + KV L W+ H
Sbjct: 245 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEXLIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 292 GIGGNEQVDKLVSSGIRK 309
>gi|256011154|gb|ACU55433.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|255984536|gb|ACU46340.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984232|gb|ACU46188.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTDRGRQKVVPJTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984108|gb|ACU46126.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKIGKAGYVTDXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSTGIRK 657
>gi|186940873|dbj|BAG31016.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|148745881|emb|CAK49329.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|114430663|dbj|BAF31478.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|87245388|gb|ABD34878.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGVRK 715
>gi|63014412|gb|AAY25591.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|62461842|gb|AAX83058.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|37221300|gb|AAQ89781.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESGLVSQIIEQLIKKDKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221302|gb|AAQ89782.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESGLVSQIIEQLIKKDKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|13095338|gb|AAK12233.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|13095102|gb|AAK12136.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKGKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|2570299|gb|AAC63080.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + ++ + + + +V L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDSSESEAVNQIIEQLIKKERVYLSWVPAHKGI 606
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 607 GGNEQVDKLVSSGIR 621
>gi|60652036|gb|AAX33110.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328834525|gb|AEB52925.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 655 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIQKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|325637677|gb|ADZ35201.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|313661089|dbj|BAJ41116.1| Pol protein [Human immunodeficiency virus 1]
gi|313661099|dbj|BAJ41125.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|308445356|gb|ADO32839.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGASNRDTKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYALGIL-------------QAQPDKSESKLVSQIIEQLINKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|306478229|gb|ADM89489.1| pol protein [Human immunodeficiency virus 1]
Length = 840
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 433 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 487
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 488 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 534
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 535 GGNEQVDKLVSAGIRK 550
>gi|306478003|gb|ADM89376.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477933|gb|ADM89341.1| pol protein [Human immunodeficiency virus 1]
gi|306477935|gb|ADM89342.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCISLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477833|gb|ADM89291.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477563|gb|ADM89156.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LADTTNQKAELQAVHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV G + ++ + + + KV L W+ H
Sbjct: 494 NIVMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|301503638|gb|ADK75346.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLKVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|288188548|gb|ADC42747.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|263200966|gb|ACY70068.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQRVVSLTDTTNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGILQSQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011608|gb|ACU55660.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256011600|gb|ACU55656.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRZTKLGRAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011488|gb|ACU55600.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKJGKAGYVTNRGRQKVVSJTDTTNQKTELQAIHLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLINKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|256011416|gb|ACU55564.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYS-------------LGIIQAQPDKSESELVNXIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984362|gb|ACU46253.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|212383227|gb|ACJ25904.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKAELQAIQLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|212545112|ref|XP_002152710.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210065679|gb|EEA19773.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 359
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 3 SKHL--REVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
S ++ ++ YTDG+ G+ G G G V+ K G EL + A
Sbjct: 34 SHNMTTDDIQIYTDGS--GHNGQIGAGMVVPGMGITRKAYLGTTGSFLVYAAELRGIVMA 91
Query: 60 LTALKYPCKVLL-YTDSSYVHKGFSQWIKKWQQ----NGWKTSDKKTVKNIDLWMKFVEA 114
L A++ + + + ++ +G + + + + L +
Sbjct: 92 LEAIQQYSQQRIARARNRWLGRGIRIYTDNQAALKALIRPRMASGQIYLRDALKILTWCE 151
Query: 115 SAQHKVDLYWIKGHAGNQEN 134
+ V +WI GH G + N
Sbjct: 152 NNNITVSFHWIPGHEGVEGN 171
>gi|194399889|gb|ACF60865.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANKETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 696 GGNEQIDKLVSAGIRK 711
>gi|170676531|gb|ACB30413.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|170676529|gb|ACB30412.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|112351489|gb|ABI15277.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 705 GGNEQVDKLVSAGIRK 720
>gi|110809906|gb|ABG91338.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 595 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDNSESEIVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|37935921|gb|AAO47164.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ V +
Sbjct: 594 YVDGAANRETKRGKAGYVTEQGKQKIINLEETTNQKAELMAVLIALQ-----DSKETVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + + + W+ H G
Sbjct: 649 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKERTYITWVPAHKGI 695
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 696 GXNEKIDKL 704
>gi|37221219|gb|AAQ89741.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVRQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 640 GIGGNEQVDKLVSNGIRK 657
>gi|71725963|gb|AAZ39099.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 ITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|62997627|gb|AAY24678.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|60651977|gb|AAX33057.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|327458185|gb|AEA76532.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRXTKLGKAGYVTDRGRQKXVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIGKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|325638026|gb|ADZ35498.1| pol protein [Human immunodeficiency virus 1]
gi|325638031|gb|ADZ35502.1| pol protein [Human immunodeficiency virus 1]
gi|325638036|gb|ADZ35506.1| pol protein [Human immunodeficiency virus 1]
gi|325638048|gb|ADZ35516.1| pol protein [Human immunodeficiency virus 1]
gi|325638053|gb|ADZ35520.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478147|gb|ADM89448.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477869|gb|ADM89309.1| pol protein [Human immunodeficiency virus 1]
gi|306478035|gb|ADM89392.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477655|gb|ADM89202.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|256010875|gb|ACU55294.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXRETKLGKAGYVTDKGRQKIVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010699|gb|ACU55206.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|87245433|gb|ABD34918.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVR 712
>gi|87245428|gb|ABD34914.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGVR 716
>gi|88174688|gb|ABD39429.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQQTELQAIHLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K KV L W+ H G
Sbjct: 658 VTDSQYALGIIQAQPDRSESEVVSKIIEQLIKKE-------------KVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 705 GGNEQVDKLVSSGIRK 720
>gi|328834515|gb|AEB52916.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSKGIR 716
>gi|327458307|gb|AEA76593.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETXLGXAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325637621|gb|ADZ35152.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQGQPDKSE-------------SDIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601870|gb|ADQ92492.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478203|gb|ADM89476.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478069|gb|ADM89409.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLAVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477653|gb|ADM89201.1| pol protein [Human immunodeficiency virus 1]
gi|306477659|gb|ADM89204.1| pol protein [Human immunodeficiency virus 1]
gi|306477665|gb|ADM89207.1| pol protein [Human immunodeficiency virus 1]
gi|306477667|gb|ADM89208.1| pol protein [Human immunodeficiency virus 1]
gi|306477669|gb|ADM89209.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|306477513|gb|ADM89131.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|270160965|gb|ACZ63328.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAINLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289469894|gb|ADC96602.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|289469778|gb|ADC96544.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289613004|emb|CBI59971.1| unnamed protein product [Sordaria macrospora]
Length = 365
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 25 GWGVLLRYKGKEK-IISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83
G+G ++ E G + E A L A V +
Sbjct: 23 GFGYVIFQGQTEIGRGCGQLEYAEVFDAEAEGARHGLKAAVALFPEAQARPHITVCLDNT 82
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
I+ + T + + + V + W+ GH G N D +A+
Sbjct: 83 SVIRGLRG----TPAASSQAAFLDFRATCKGYGPDLVSVRWVPGHKGITGNGIADELAKA 138
Query: 144 AAV 146
A
Sbjct: 139 GAE 141
>gi|288899138|gb|ADC67101.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + L A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQALHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984742|gb|ACU46443.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRKI 159
>gi|241016868|gb|ACS66680.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 593 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + V L W+ H
Sbjct: 646 NIVTDSQYALGILQAQPDRSE-------------SEVVNQIIEELIKKEXVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|238734271|gb|ACR55496.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGASNIETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGPEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSRGIRK 712
>gi|226348654|gb|ACO50646.1| pol protein [Human immunodeficiency virus 1]
Length = 751
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRKI 492
>gi|212382950|gb|ACJ25774.1| pol protein [Human immunodeficiency virus 1]
Length = 1018
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 611 YVDGAATRETKIGKAGYVTDRGRQKVVSLSETTNQKAELQAIQLALQ-----DSGSEANI 665
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 666 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 712
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 713 GGNEQVDKLVSKGIRK 728
>gi|86560165|gb|ABD04227.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|87245398|gb|ABD34887.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRDTKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGVRK 715
>gi|57869553|gb|AAW57605.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKQGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221240|gb|AAQ89751.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANKETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|36365381|gb|AAQ86603.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|22596263|gb|AAN03052.1|AF457055_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELYAIDLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|29242929|gb|AAO67307.1| Pol [Simian immunodeficiency virus]
Length = 1019
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 607 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 664 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 709 GGNQEVDHLVSQGIRQ 724
>gi|3002831|gb|AAD03191.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRK 1145
>gi|14091512|gb|AAK53775.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD + +
Sbjct: 541 GIGGNEQVDNLVSSGIRK 558
>gi|56609302|gb|AAW03257.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQALPDRSESGIVNKIIEKLIEKE-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|325638075|gb|ADZ35539.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325634643|gb|ADZ32617.1| pol protein [Human immunodeficiency virus 1]
Length = 928
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|315258496|dbj|BAJ46171.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELASQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|306478101|gb|ADM89425.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478073|gb|ADM89411.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477663|gb|ADM89206.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|306477661|gb|ADM89205.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|306477657|gb|ADM89203.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRKI 559
>gi|306477593|gb|ADM89171.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVS---ITDTTNQRTELQAIHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+ +
Sbjct: 543 GGNEQVDRLVSSGIRK 558
>gi|289469866|gb|ADC96588.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELQAIQLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011188|gb|ACU55450.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIXKEXVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGVRK 717
>gi|226348662|gb|ACO50650.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTNRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|134252677|gb|ABO64928.1| pol protein [Human immunodeficiency virus 1]
Length = 726
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS ETTN + EL A AL +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVIS--LPETTNQKTELHAIYLALQDSG--SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIR 713
>gi|121581803|dbj|BAF44511.1| Pol [Human immunodeficiency virus 1]
gi|121592360|dbj|BAF44502.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + T N+ + AI +V +
Sbjct: 596 YVDGAADRETKIGKAGYVTNKGRQKVVS----LTDTTNQKTELEAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|86560235|gb|ABD04290.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + +V L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|119508039|dbj|BAF42434.1| Pol [Human immunodeficiency virus 1]
gi|119508049|dbj|BAF42443.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYVLGIIQAQPDRSE-------------SELVNQIIERLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114430913|dbj|BAF31703.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491556|gb|AAR21960.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K +K KV L WI H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIKKD-------------KVYLSWIPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRKI 714
>gi|36365444|gb|AAQ86659.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVANQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|36365453|gb|AAQ86667.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRKI 714
>gi|29409296|gb|AAM67376.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 595 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + KV L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEKLIEKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|71726003|gb|AAZ39135.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNV 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|328834470|gb|AEB52876.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 701 GGNEQVDKLVSNGIRK 716
>gi|312601852|gb|ADQ92483.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011526|gb|ACU55619.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 696 GGNEQVDKLVSNGIRK 711
>gi|256011036|gb|ACU55374.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSXGIRK 715
>gi|256252587|dbj|BAH97695.1| Pol [Human immunodeficiency virus 2]
gi|256252597|dbj|BAH97704.1| Pol [Human immunodeficiency virus 2]
Length = 1041
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 621 YTDGSCNRASKEGKAGYVTDRGKDRVKVLEQTTNQQAELEAFALALQ-----DSGPQVNI 675
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G T + N + E + + + W+ H G
Sbjct: 676 IVDSQYVM---------GIIAGQPTETDSPIVNKIIE----EMIKKEAIYVGWVPAHKGL 722
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 723 GGNQEVDHLVSQGIRQ 738
>gi|170778903|gb|ACB36851.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANREXKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|37677845|gb|AAQ97516.1| Pol protein [Human immunodeficiency virus 1]
gi|37681542|gb|AAQ97651.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|22596339|gb|AAN03119.1|AF457064_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVAPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRKI 714
>gi|49574381|gb|AAT66860.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|25166971|gb|AAN73745.1|AF484512_1 truncated gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1148
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1028 YVDGAANRETRLGKAGYVTDRGRQKVITLTETTNQKTELHAIYLALQ-----DSGSEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1130 GGNEQVDKLVSSGIRK 1145
>gi|77416875|sp|P03369|POL_HV1A2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1437
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1030 YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1132 GGNEQVDKLVSAGIRK 1147
>gi|67525771|ref|XP_660947.1| hypothetical protein AN3343.2 [Aspergillus nidulans FGSC A4]
gi|40744131|gb|EAA63311.1| hypothetical protein AN3343.2 [Aspergillus nidulans FGSC A4]
gi|259485679|tpe|CBF82905.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 960
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
A + + WI GH+G NE D++A+
Sbjct: 767 WRAAKPLQVRWIPGHSGIAGNELADKLAKLG 797
>gi|326416898|gb|ADZ73302.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRDT-KAGKAGYITDRGRQKVVS--LTDTTNQKTELHAIQLALQDSGP--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNNIIEQLIKKERIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
N++VD++ +
Sbjct: 642 GGNKQVDKLVSSGIR 656
>gi|306478343|gb|ADM89546.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTBKGXQKVIS---LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGXIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|306478141|gb|ADM89445.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478097|gb|ADM89423.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478041|gb|ADM89395.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|256011422|gb|ACU55567.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 602 YVDGASNRETKLGKAGY---VTDKGRQKVVS--LTDTTNQKTELHAIYLALQDSGL--EV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRK 719
>gi|255984602|gb|ACU46373.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGXQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984520|gb|ACU46332.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|226348676|gb|ACO50657.1| pol protein [Human immunodeficiency virus 1]
Length = 753
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGTEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKIYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 476 GGNEQVDKLVSSGIRK 491
>gi|170676543|gb|ACB30416.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|164415918|gb|AAY24645.2| pol protein [Human immunodeficiency virus 1]
Length = 994
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 587 YVDGAANRETKLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 641
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 642 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 688
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 689 GGNEQVDKLVSSGIRK 704
>gi|37221410|gb|AAQ89834.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|327458275|gb|AEA76577.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G + +G++KI+S E TTN + EL A AL +
Sbjct: 441 YVDGAASRET-KMGKAGYVTDRGRQKIVSLTE--TTNQKAELQAIHLALQDSGLEANI-- 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKXI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306478045|gb|ADM89397.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAADRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306416438|gb|ADM87066.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ + G + ++ + E + KV L W+ H
Sbjct: 481 AIHLALQDSGSEVNIVTDSQXALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|262348256|gb|ACY56350.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSEXELVNQIIEKLIXKD-------------KIYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288187600|gb|ADC42293.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTINDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|256011266|gb|ACU55489.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTD---TTNQKXELQAIHLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ N
Sbjct: 700 GIGGNEKVDKLVSNGIRK 717
>gi|256011264|gb|ACU55488.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETRLGKAGYVTNRGRQKVISLTDTTNQKTELHAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|256010907|gb|ACU55310.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSELEVNX 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984130|gb|ACU46137.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|255984072|gb|ACU46108.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKXVPJTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 595 VTDSQYXLGII--------------QAQPDKSESEJVSQIIEQLIKKEKVYLAWVPAHKG 640
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 641 IGGNEQVDKLVSAGIRK 657
>gi|156254399|gb|ABU62689.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGKQKVITLTETTNQKTELHAIQLALQ-----DSGTEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIKKERVYLSWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 103 GGNEQVDKLVSNGIRK 118
>gi|114431076|dbj|BAF31334.1| Pol [Human immunodeficiency virus 1]
gi|114431086|dbj|BAF31343.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AVYLALQDSESEVNIVTDSQYVLGIIQAQPDKSESELVSQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114430683|dbj|BAF31496.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|63098324|gb|AAY32373.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKAELQAIQLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|32261268|gb|AAP74169.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|49574392|gb|AAT66865.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKAVSLTD---TTNQKTELQAIHLASQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TD Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDPQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIR 557
>gi|3808252|gb|AAC69289.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDSSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|74273452|gb|ABA01435.1| pol protein [Human immunodeficiency virus 1]
gi|74273461|gb|ABA01443.1| pol protein [Human immunodeficiency virus 1]
gi|74273471|gb|ABA01452.1| pol protein [Human immunodeficiency virus 1]
gi|74273481|gb|ABA01461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYS-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|312601913|gb|ADQ92513.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|312601854|gb|ADQ92484.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306477945|gb|ADM89347.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477865|gb|ADM89307.1| pol protein [Human immunodeficiency virus 1]
gi|306477867|gb|ADM89308.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477553|gb|ADM89151.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYV---TDKGRQKAVPLADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477495|gb|ADM89122.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|295810667|gb|ADG34209.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|288899128|gb|ADC67096.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKTGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|288188460|gb|ADC42704.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHNGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188194|gb|ADC42582.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187817|gb|ADC42396.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNKGRQKVVTLTDTTNQKAELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011360|gb|ACU55536.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGNAGYVTDRGRQKVIHLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 701 GGNEKVDKLVSAGIRK 716
>gi|256011034|gb|ACU55373.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|256010893|gb|ACU55303.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAINLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984788|gb|ACU46466.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVXLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|170778919|gb|ACB36859.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRRI 559
>gi|158931165|sp|Q1A267|POL_SIVMB RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1438
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KIIS E T N+ + AI+ +V
Sbjct: 1027 YVDGAANRETKLGKAGY---VTDKGRQKIISLTE---TTNQKAELQAIQLALQDSEV-EV 1079
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + E + KV L W+ H
Sbjct: 1080 NIVTDSQYALGIIQGQPDTSE-------------SEIVNQIIEELIKKEKVYLSWVPAHK 1126
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 1127 GIGGNEQIDKLVSSGIRK 1144
>gi|157274071|gb|ABV28336.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|114430763|dbj|BAF31568.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|112351469|gb|ABI15259.1| pol protein [Human immunodeficiency virus 1]
Length = 964
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|112351429|gb|ABI15223.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|86277628|gb|ABC88346.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|29409315|gb|AAM67393.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTNRGRQKIVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|22037895|gb|AAM90231.1|AF468659_2 pol protein [Simian immunodeficiency virus]
Length = 1015
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 18/139 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V Y DGA + G G + + +ETTN + EL A + AL K
Sbjct: 604 VTYYVDGAANRTSKLGKAGYVTNTGKHR---AIELEETTNQQAELHAVLLALKEGPP--K 658
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ L TDS YV S + + + E + + L W+ H
Sbjct: 659 MNLVTDSQYVMGIL-------------QSQPEVSTSALVEQIIQELLKKEAIYLSWVPAH 705
Query: 129 AGNQENEKVDRIARNAAVS 147
G N +VD++
Sbjct: 706 KGIGGNTEVDKLVSKGIRQ 724
>gi|3808262|gb|AAC69298.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A + AL +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTNRGRQKVVSLTE--TTNQKTELHAILLALQDSG--SEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|25166941|gb|AAN73718.1|AF484509_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SGV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSDSEIVNLIIEKLIEKDKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRKI 1144
>gi|71025138|gb|AAC56559.2| pol protein [Simian immunodeficiency virus]
Length = 1019
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 607 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 664 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 709 GGNQEVDHLVSQGIRQ 724
>gi|325636522|gb|ADZ34228.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|325636465|gb|ADZ34181.1| pol protein [Human immunodeficiency virus 1]
gi|325636482|gb|ADZ34195.1| pol protein [Human immunodeficiency virus 1]
gi|325636553|gb|ADZ34254.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|256011640|gb|ACU55676.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 558 YVDGAANRETKLGKAGYVTNRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 613 VTDSQYA-------------LGIIQAQPDTSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 660 GGNEQVDKLVSSGIRK 675
>gi|256011454|gb|ACU55583.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGREKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010851|gb|ACU55282.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTBKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SDLVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984426|gb|ACU46285.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVXTLTDTTNQKTELQAIHLALQ-----DSGTEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 96 VTDSQYAJGII-------------QAQPDKSESELVNQIIEQLIXKXRVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984298|gb|ACU46221.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984278|gb|ACU46211.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAHPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|256252314|dbj|BAH97353.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|222428529|gb|ACM50153.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|224093256|ref|XP_002334849.1| predicted protein [Populus trichocarpa]
gi|222875212|gb|EEF12343.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 13 TDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ G PG G G +LR + I S +N EL A +KA+ C +
Sbjct: 82 VDGSSLGKPGLSGIGGVLRNHHGHLLDIFSLPVGILDSNIAELRAVVKAVELSASNCLLH 141
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
HK + W + + V+ + + + H
Sbjct: 142 --------HKHITIESDSANVISWMHNSHNRLWMHRELFSTVQRLTRFFGSITF--SHVY 191
Query: 131 NQENEKVDRIARNAAV 146
+ N D +A+
Sbjct: 192 RESNSLADCMAKQGVR 207
>gi|164415886|gb|AAU14967.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDKGKQKVITLTDTTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSTGIRK 709
>gi|87245468|gb|ABD34947.1| pol protein [Human immunodeficiency virus 1]
gi|87245478|gb|ABD34956.1| pol protein [Human immunodeficiency virus 1]
gi|87245488|gb|ABD34965.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVR 712
>gi|22535297|ref|NP_687035.1| Gag-Pol [Simian immunodeficiency virus]
gi|158931136|sp|Q02836|POL_SIVG1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1472
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ E+ S + + + V
Sbjct: 1050 YVDGAASKVTKLGKAGY-------LSERGKSRIRELENTTNQQAELTAVKMALEDSGENV 1102
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV T+ + + + + +V L W+ H
Sbjct: 1103 NIVTDSQYVMNIL-------------TACPQESNSPLVEQIIQALMKKRQVYLQWVPAHK 1149
Query: 130 GNQENEKVDRIARNAAVSF 148
G N ++D++
Sbjct: 1150 GIGGNTEIDKLVSKGIRQI 1168
>gi|7144660|gb|AAF37326.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 431 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELKAIHLALQNSGL-----EVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHTGI 532
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 533 GGNEQVDKLVSAGIR 547
>gi|87042744|gb|ABD16379.1| pol protein [Feline immunodeficiency virus]
Length = 322
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G +G+ E E +N + E+ A + AL A ++ TDS Y+
Sbjct: 5 GKAARAAYWTDRGR---WQVMELEGSNQKAEVQALLLALRAGPEEMNII--TDSQYIMNI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
+Q + E + + + W+ GH G NE+VD+I
Sbjct: 60 INQQPDLMEGI--------------WQEVLDELEKKVAIFIDWVPGHKGIPGNEEVDKI 104
>gi|13096104|pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTQLQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|327458225|gb|AEA76552.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRENKLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQ-----DSGPEVNV 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|325636503|gb|ADZ34212.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|325636498|gb|ADZ34208.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|312601984|gb|ADQ92548.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478169|gb|ADM89459.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478145|gb|ADM89447.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478139|gb|ADM89444.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478105|gb|ADM89427.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477799|gb|ADM89274.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K+IS + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVISLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306477561|gb|ADM89155.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LADTTNQKAELQAVHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV G + ++ + + + KV L W+ H
Sbjct: 494 NIVMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306477547|gb|ADM89148.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|259122712|gb|ACV92674.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEVVNQIIEKLVEKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|256011544|gb|ACU55628.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|256011440|gb|ACU55576.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256011126|gb|ACU55419.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDXGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 654 XSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSXGIRK 716
>gi|256010761|gb|ACU55237.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984902|gb|ACU46523.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPJTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 143 GGNEQIDKLVSSGIRK 158
>gi|255984760|gb|ACU46452.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETXXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984612|gb|ACU46378.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|186940883|dbj|BAG31025.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLADTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDNSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|117606922|gb|ABK42013.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|114430693|dbj|BAF31505.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114430973|dbj|BAF31757.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|62822737|gb|AAY15132.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 532
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 416 YTDGSCNRQSKEGKAGYITDRGRDKV---RVLEQTTNQQAELEAFAMALTDSGP--KVNI 470
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 471 IVDSQYVMGIVAGQPTESE-------------SKIVNQIIEEMIKKEALYVAWVPAHKGI 517
Query: 132 QENEKVDRIARNAAV 146
N++VD +
Sbjct: 518 GGNQEVDHLVSQGIQ 532
>gi|60652046|gb|AAX33119.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478261|gb|ADM89505.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478207|gb|ADM89478.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478137|gb|ADM89443.1| pol protein [Human immunodeficiency virus 1]
gi|306478149|gb|ADM89449.1| pol protein [Human immunodeficiency virus 1]
gi|306478167|gb|ADM89458.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478131|gb|ADM89440.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478127|gb|ADM89438.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478107|gb|ADM89428.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469786|gb|ADC96548.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288188444|gb|ADC42697.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011174|gb|ACU55443.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|255984422|gb|ACU46283.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 143 GGNEQIDKLVSSGIRK 158
>gi|255983980|gb|ACU46062.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKSGKAGYVTDRGRQKVVPLMDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWXPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 642 GGNEKVDKLVSAGIRK 657
>gi|238734261|gb|ACR55487.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSEAELVNQIIEKLIEKD-------------KVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|222428419|gb|ACM50065.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|164415928|gb|AAZ75944.2| pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 590 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 692 GGNEQVDKLVSSGIRK 707
>gi|156254373|gb|ABU62676.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ K+ L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLISKEKIYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSTGIRK 118
>gi|148745859|emb|CAK49318.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGASNRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRRI 714
>gi|113201798|gb|ABI33116.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQ-----DSGPEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 659 ITDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 706 GGNEQVDKLVSNGIRK 721
>gi|114431096|dbj|BAF31352.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221278|gb|AAQ89770.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTSRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|29242932|gb|AAO67309.1| Pol [Simian immunodeficiency virus]
Length = 1019
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 607 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 664 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 709 GGNQEVDHLVSQGIRQ 724
>gi|29119297|gb|AAO63215.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|76577750|gb|ABA54146.1| pol protein [Simian immunodeficiency virus]
gi|76577760|gb|ABA54155.1| pol protein [Simian immunodeficiency virus]
gi|76577770|gb|ABA54164.1| pol protein [Simian immunodeficiency virus]
Length = 1019
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 607 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 664 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 709 GGNQEVDHLVSQGIRQ 724
>gi|325635035|gb|ADZ32959.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|306478037|gb|ADM89393.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKGESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306416454|gb|ADM87074.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
NE+VDR+ +
Sbjct: 541 RIGGNEQVDRLVSSGIRK 558
>gi|304347455|gb|ADM25290.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|295982550|pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
gi|295982554|pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
gi|302565882|pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|291463534|pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
gi|291463538|pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
gi|291463542|pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
gi|291463546|pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|290972275|ref|XP_002668880.1| RNase H [Naegleria gruberi]
gi|284082415|gb|EFC36136.1| RNase H [Naegleria gruberi]
Length = 397
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 17/142 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKG---KEKIISGGEKETTNNRMELMAAIKALTALKYP 66
YTDG+ G+G+ E++ + ++N EL A + A L
Sbjct: 62 EIYTDGSKMDE-NSTGFGIYFHKGVIEGNEQLSFNIDGRYSHNVAELTAILMASKLLPNN 120
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K ++TDS + K+ L +K
Sbjct: 121 SKATIFTDSKISIDILNPRY------------DGKFSIFKDEFYRTIFDKNLKIKLEKVK 168
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GH + N VD +A+ + +
Sbjct: 169 GHV-DPNNIIVDELAKKGSKQY 189
>gi|281306993|pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 442 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 496
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 497 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 543
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 544 GGNEQVDKLVSAGIRK 559
>gi|256011682|gb|ACU55697.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011566|gb|ACU55639.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 594 YVDGAANRDTKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIR 710
>gi|256010941|gb|ACU55327.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010801|gb|ACU55257.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010759|gb|ACU55236.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984478|gb|ACU46311.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTXTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984374|gb|ACU46259.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKVGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|255311720|pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
gi|255311721|pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|212383200|gb|ACJ25892.1| pol protein [Human immunodeficiency virus 1]
Length = 378
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 85 YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQ-----DSGSEVNI 139
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 140 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 186
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 187 GGNEQVDKLVSKGVK 201
>gi|209447462|pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
gi|297787678|pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
gi|297787680|pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
gi|297787682|pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
Length = 563
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 444 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 498
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 499 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 545
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 546 GGNEQVDKLVSAGIRK 561
>gi|209447460|pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 444 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 498
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 499 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 545
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 546 GGNEQVDKLVSAGIRK 561
>gi|197107386|pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
gi|215261234|pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
gi|215261238|pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
gi|296278501|pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
gi|296278503|pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
gi|303325092|pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|196049892|pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|196049890|pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
gi|196049894|pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|164414798|pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
gi|185177945|pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
gi|185177947|pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
gi|209447458|pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
gi|256599853|pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
gi|256599855|pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
Length = 563
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 444 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 498
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 499 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 545
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 546 GGNEQVDKLVSAGIRK 561
>gi|114430633|dbj|BAF31451.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|14030514|gb|AAK52930.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSAGIRK 545
>gi|49574373|gb|AAT66856.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 ATDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|896047|gb|AAA93161.1| reverse transcriptase/RNaseH [Human immunodeficiency virus 1]
Length = 566
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|310399|gb|AAA74698.1| pol polyprotein [Simian immunodeficiency virus]
gi|310409|gb|AAA47567.1| pol polyprotein [Simian immunodeficiency virus]
gi|310419|gb|AAA47576.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1022
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 610 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 667 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 712 GGNQEVDHLVSQGIRQ 727
>gi|50513432|pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|50513426|pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
gi|50513428|pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
gi|50513430|pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
gi|196049896|pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|50513434|pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|24987651|pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|334757|gb|AAA47753.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1022
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 610 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 667 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 712 GGNQEVDHLVSQGIRQ 727
>gi|4558187|pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|15988055|pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
gi|15988057|pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
gi|15988059|pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
gi|15988061|pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|15988063|pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
gi|15988067|pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|28949057|pdb|1O1W|A Chain A, Solution Structure Of The Rnase H Domain Of The Hiv-1
Reverse Transcriptase In The Presence Of Magnesium
Length = 138
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 19 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 73
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 74 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 120
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 121 GGNEQVDKLVSAGIRK 136
>gi|24987653|pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(Rtmq+m184v: M41lD67NK70RM184VT215Y) IN COMPLEX WITH
Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|25121907|ref|NP_705927.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|186469699|ref|YP_001856242.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|1421213|pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
gi|1421215|pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
gi|1431729|pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
gi|1431733|pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
gi|185177608|pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
gi|289526847|pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
gi|289526848|pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
gi|289526849|pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|289526850|pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|289526851|pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|289526852|pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|289526853|pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|289526854|pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
gi|295982548|pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
gi|295982552|pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
gi|302565884|pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
gi|329666229|pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|24987643|pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
gi|24987645|pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1827604|pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
gi|2098304|pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
gi|2098306|pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
gi|2981786|pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
gi|5822397|pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
gi|5822399|pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
gi|5822401|pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
gi|5822403|pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
gi|7546272|pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
gi|7546472|pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
gi|9955145|pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
gi|9955147|pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
gi|9955194|pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
gi|9955196|pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
gi|10835519|pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
gi|15826762|pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
gi|58176810|pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
gi|58176812|pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
gi|58176814|pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
gi|58176816|pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
gi|58176818|pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
gi|196049881|pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
gi|196049883|pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
gi|253722358|pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|15988065|pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|24987649|pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325634846|gb|ADZ32794.1| pol protein [Human immunodeficiency virus 1]
gi|325634902|gb|ADZ32843.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|304347447|gb|ADM25286.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ T N+ + AI +V
Sbjct: 441 YVDGAANRDTKLGKAGY------XTDRGRQKVVPLTDTTNQKTELQAIHLALQDSGX-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|288899132|gb|ADC67098.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288899130|gb|ADC67097.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011182|gb|ACU55447.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010966|gb|ACU55339.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ KG++K+ S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---XTDKGRQKVXSITD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|255984836|gb|ACU46490.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSTGIRK 158
>gi|255984822|gb|ACU46483.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKAGKAGYVTNRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|255069202|dbj|BAH89137.1| Pol [Human immunodeficiency virus 1]
gi|255069212|dbj|BAH89146.1| Pol [Human immunodeficiency virus 1]
gi|255069222|dbj|BAH89155.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|159503448|gb|ABW97591.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|148745873|emb|CAK49325.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 962
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI V
Sbjct: 594 YVDGAANKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-STV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSELEIVNQIIEKLIEKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 694 GIGGNEQVDKLVSNGIRK 711
>gi|114430923|dbj|BAF31712.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|112351479|gb|ABI15268.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|5305355|gb|AAD41607.1|AF071474_2 pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIQKD-------------KVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|56609339|gb|AAW03289.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + + KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIGKD-----KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|77416883|sp|P20875|POL_HV1JR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1439
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1032 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1086
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1087 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1133
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1134 GGNEQVDKLVSAGIRK 1149
>gi|328834634|gb|AEB53022.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ KV +
Sbjct: 596 YVDGAANKDTKVGKAGYVTDKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLKVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|327458301|gb|AEA76590.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP----LTDTTNQKTELEAIHLALQDSGL-EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|327458299|gb|AEA76589.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP----LTDTTNQKTELEAIHLALQDSGL-EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325635043|gb|ADZ32966.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|319444184|gb|ADV58196.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|312601808|gb|ADQ92463.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|310791578|gb|EFQ27105.1| hypothetical protein GLRG_02276 [Glomerella graminicola M1.001]
Length = 227
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 32/158 (20%)
Query: 9 VHAYTDGACSGNPG---------PGGWGVLLRYKGKEKIISGG--------------EKE 45
+ +TD + S G P G V + + E E
Sbjct: 35 IDIFTDASFSMTKGCQGSSKPSNPAGVAVFWKPWPGLLVRDPWHSRAFQLLACRDSREAE 94
Query: 46 TTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNI 105
L A + +V ++TD +
Sbjct: 95 LFAVVTGLETAALLAHLMPELRRVTVFTDCQDSIHTLMAAAA---------KASDPLVKR 145
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ + +V + W GH + NEK + +AR
Sbjct: 146 AVAASVELVARGVRVLVRWCPGHVAIEGNEKANGLARE 183
>gi|306478347|gb|ADM89548.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|300431903|gb|ADK12803.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|300431883|gb|ADK12785.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|300431863|gb|ADK12767.1| pol protein [Human immunodeficiency virus 1]
gi|300431873|gb|ADK12776.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|294992468|gb|ACU55554.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288558535|dbj|BAI68324.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 232 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDRSDSEXVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 292 GIGGNEQVDKL 302
>gi|256011322|gb|ACU55517.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVNKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011272|gb|ACU55492.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAADRKTKLGKAGYVTNRGRQKVVTLNDTTNQKTELQAINLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|256010695|gb|ACU55204.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|255984552|gb|ACU46348.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRENKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238634121|gb|ACR52022.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRKI 717
>gi|233956473|gb|ACQ91220.1| pol protein [Human immunodeficiency virus 1]
Length = 704
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 505 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIR 621
>gi|222428291|gb|ACM49963.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S +TTN + EL A + AL +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTNRGKQKVVS--LTDTTNQKTELQAILLALQDSGL--EV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLINKEKVYLAWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 697 GIGGNEQVDKLVSAGIRK 714
>gi|156254385|gb|ABU62682.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 1 YVDGAANRETKLGRAGYVTDRGRQRVVSITDTTNQKTELQAIHLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VSDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIR 117
>gi|114430933|dbj|BAF31721.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|38491841|gb|AAR22214.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37935951|gb|AAO47191.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I M ++ A++ KV +
Sbjct: 594 YVDGAANRETKLGKAGYVTEQGKQKIINLEETTNQKAELMAVLIALQ-----DSKEKVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + + + W+ H G
Sbjct: 649 VTDSQYVLGIISSQPTQS-------------DSPIVQQIIEELTKKEQTYITWVPAHKGI 695
Query: 132 QENEKVDRI 140
NEK+D++
Sbjct: 696 GGNEKIDKL 704
>gi|37221450|gb|AAQ89854.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|1732486|gb|AAB38833.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1425
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 1018 YVDGAASRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 1070
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 1071 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKEKVYLSWVPAHK 1117
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1118 GIGGNEQVDKLVISGIRK 1135
>gi|3163931|emb|CAA06947.1| pol polyprotein precursor [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|29119334|gb|AAO63248.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|25166891|gb|AAN73673.1|AF484504_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRK 1143
>gi|26518638|gb|AAN83912.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|10436122|gb|AAG16802.1| pol protein [Human immunodeficiency virus 1]
gi|10436132|gb|AAG16811.1| pol protein [Human immunodeficiency virus 1]
gi|300431893|gb|ADK12794.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|78100201|gb|ABB20904.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 593 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 632
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 633 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKEKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G N KVD++ +
Sbjct: 693 GIGGNNKVDKLVSSGIRK 710
>gi|325636470|gb|ADZ34185.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|306477557|gb|ADM89153.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LADTTNQKAELQAVHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV G + ++ + + + KV L W+ H
Sbjct: 494 NIVMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594680|gb|ADL59528.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYVLGIIQAQPDRSESEIVNLIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIRK 118
>gi|255984474|gb|ACU46309.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBRGRQKXVXLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984202|gb|ACU46173.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGILQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984046|gb|ACU46095.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEXLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|238734096|gb|ACR55341.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEMLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVRKI 714
>gi|238634111|gb|ACR52017.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|284030531|ref|YP_003380462.1| phosphoglycerate mutase [Kribbella flavida DSM 17836]
gi|283809824|gb|ADB31663.1| Phosphoglycerate mutase [Kribbella flavida DSM 17836]
Length = 374
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS------GGEKETTNNRMELMAAIKAL 60
R V DG GNPGP +G L+R ++I+ G L+A ++
Sbjct: 4 RHVIVEADGGSRGNPGPAAYGALVRDPQTGEVIAQAGVTIGIATNNVAEYSGLIAGLELA 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + DS V + + K ++ ++ A
Sbjct: 64 AEYAPDASIEVRMDSKLVVEQMAGRWKV------------KHPDMKPLAMKAQSLAPFGT 111
Query: 121 DLYWIK 126
+ W+
Sbjct: 112 EWTWVP 117
>gi|222428459|gb|ACM50097.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 607 YVDGAANRETKLGKAGYVTNRGRQKVVTITDTTNQKTELQAIHLALQ-----DSGLEVNI 661
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 662 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 708
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 709 GGNEQVDKLVSTGIRK 724
>gi|212382966|gb|ACJ25782.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGPEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE VD++ N
Sbjct: 698 GIGGNELVDKLVSNGIRK 715
>gi|134284750|gb|ABO69447.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DGA G GW E E +N E A AL A ++
Sbjct: 608 YIDGARKKGQKARAGW------WKNSTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 705
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 706 IPGNKEIDEL 715
>gi|159503420|gb|ABW97571.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|159031775|dbj|BAF91859.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 410 YVDGAXNRETRLGKAGYVTDKGRQKVVSMTDTTNQKTELQAINLALQ-----DSGSEVNI 464
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 465 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 511
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 512 GGNEQVDKLVSNGIRK 527
>gi|121581783|dbj|BAF44484.1| Pol [Human immunodeficiency virus 1]
gi|121581793|dbj|BAF44493.1| Pol [Human immunodeficiency virus 1]
Length = 1008
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|119507371|dbj|BAF42589.1| Pol [Human immunodeficiency virus 1]
gi|119507381|dbj|BAF42598.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114430863|dbj|BAF31658.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114430723|dbj|BAF31532.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|22596475|gb|AAN03239.1|AF457080_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ +R T +
Sbjct: 596 YVDGAANRENKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEELIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|8885924|gb|AAF80298.1|AF156820_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1017
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 610 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 665 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 712 GGNEQVDKLVSAGIRK 727
>gi|328555|gb|AAB59867.1| pol polyprotein (NH2-terminus uncertain) [Human immunodeficiency
virus 1]
Length = 1015
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G L ++ + + A++ +V +
Sbjct: 608 YVDGAANRETRLGKAGYLTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 662
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 663 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKQKVYLAWVPAHKGI 709
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 710 GGNEQVDKLVSAGIRKI 726
>gi|86753623|gb|ABD15044.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGNAGYVTDKGRQKVVTLTETTNQKAELQAIQLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + ++ L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSGSELVNQIIEQLINKERIYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSKGIRK 716
>gi|62946402|gb|AAY22379.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELQAIKLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|61102578|gb|AAX37718.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + E + KV L W+ H
Sbjct: 73 NIVTDSQYA-------------LGIIQAQPDKSELELVSQIIEELIKKEKVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRKI 138
>gi|330469452|ref|YP_004407195.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
gi|328812423|gb|AEB46595.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
Length = 403
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY 32
R V DG GNPGP G+G +LR
Sbjct: 3 PRTVLVEADGGARGNPGPAGYGAVLRD 29
>gi|325637371|gb|ADZ34940.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVINLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRRI 714
>gi|325634762|gb|ADZ32721.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|312602014|gb|ADQ92562.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|312601787|gb|ADQ92453.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478211|gb|ADM89480.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478171|gb|ADM89460.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478151|gb|ADM89450.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478119|gb|ADM89434.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478039|gb|ADM89394.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKGESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|257152889|emb|CAT00588.1| gag/pol precursor [HIV-1 M_02CD.LBTB032]
Length = 1431
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL +V +
Sbjct: 1024 YVDGAANRETKLGKAGYVTDRGKQKIIP---LTETTNQKTELHAIYLALQDSGP--EVNI 1078
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1079 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVHLTWVPAHKGI 1125
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1126 GGNEQVDKLVSSGIRK 1141
>gi|255984216|gb|ACU46180.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKIGKAGYVTNKGRQKVISITDTTNQKTELQAIHLALQ-----DSGPEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|226348624|gb|ACO50631.1| pol protein [Human immunodeficiency virus 1]
Length = 745
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 368 YVDGAANRETKLGKAGYVTDKGRQKVVSIADTTNQKTELQAIHLALQ-----DSGLEVNI 422
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 423 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 469
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 470 GGNEQVDKLVSAGIRK 485
>gi|170676545|gb|ACB30417.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITNKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|157005044|gb|ABV00748.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|124359723|gb|ABD32401.2| Ribonuclease H [Medicago truncatula]
Length = 233
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 21/151 (13%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKA 59
++++ ++ DG+C G P G+G +LR I SG + + + + AI
Sbjct: 69 NNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQ 128
Query: 60 ---LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L +++ Y+DS N + L +
Sbjct: 129 GLKLVTDLNVNEIMCYSDS------------LLAVNLIANDTPRYHIYAALIQNIKDLLN 176
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L+ H + N+ D A+ A S
Sbjct: 177 DRNISLH----HTLREGNQCADFFAKFGANS 203
>gi|114430843|dbj|BAF31640.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|38491713|gb|AAR22100.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KIIS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKIISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|82304715|sp|Q9IDV9|POL_HV1YB RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|8920152|emb|CAB96338.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1449
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + TTN + EL A + AL +
Sbjct: 1038 YVDGAANKETKLGKAGFVTDRGRQKVVS---IENTTNQKAELQAILLALQESGQEANI-- 1092
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y S ++ + E + +V L W+ H G
Sbjct: 1093 VTDSQYAMGII-------------HSQPDKSESDLVGQIIEELIKKERVYLSWVPAHKGI 1139
Query: 132 QENEKVDRIARNAAV 146
NE+VD + +
Sbjct: 1140 GGNEQVDXLVSSGIR 1154
>gi|13095154|gb|AAK12159.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAADRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|327458261|gb|AEA76570.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYXLGIIQAQPDQSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325635757|gb|ADZ33571.1| pol protein [Human immunodeficiency virus 1]
gi|325635765|gb|ADZ33578.1| pol protein [Human immunodeficiency virus 1]
gi|325635781|gb|ADZ33592.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|325634691|gb|ADZ32659.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|312602010|gb|ADQ92560.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|312601925|gb|ADQ92519.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|310975602|gb|ADP55146.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ N+ T +
Sbjct: 595 YVDGASNRETKLGKAGY--------------------VTNKGRQKVVTLTETTNQRTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + +V L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQHALGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|306478109|gb|ADM89429.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|295810675|gb|ADG34216.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|288187716|gb|ADC42349.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|256011062|gb|ACU55387.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 651 VTDSQYA-------------LGXIQAQPDKSESDIVXQIIEQLVKKEXVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984886|gb|ACU46515.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIR 157
>gi|255984240|gb|ACU46192.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEJVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 143 GGNEQVDRLVSTGIRK 158
>gi|145608428|ref|XP_360576.2| hypothetical protein MGG_12774 [Magnaporthe oryzae 70-15]
gi|145015907|gb|EDK00397.1| hypothetical protein MGG_12774 [Magnaporthe oryzae 70-15]
Length = 323
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 101 EVRVRWCPGHQGIPGNDRADELAKAG 126
>gi|126567730|gb|ABO21032.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLVGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|126567740|gb|ABO21041.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V+ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLVEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSTGIRK 712
>gi|86560146|gb|ABD04210.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|114430753|dbj|BAF31559.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|91805467|gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 11/132 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDGA GNPG G +LR N A + L + Y +
Sbjct: 158 TDGASRGNPGLASAGGVLRD-----EEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWE 212
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
+ + I + L F+ + ++ H +
Sbjct: 213 RRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCHDFISRDWRVRI------SHVYRE 266
Query: 133 ENEKVDRIARNA 144
N D +A A
Sbjct: 267 ANRLADGLANYA 278
>gi|37682900|gb|AAQ98470.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVVSLTETTNQKTELHAICLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|37221258|gb|AAQ89760.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAXGII-------------QAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221234|gb|AAQ89748.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQXALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|6630448|gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 34/134 (25%), Gaps = 15/134 (11%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISG--GEKETTNNRMELMAAIKALTALKYPCKVL 70
TDGA GNPG G LR + E EL L
Sbjct: 77 TDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAWDRGITR 136
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L + + S + + F+ ++ GH
Sbjct: 137 LELEVD-------SEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRI------GHVY 183
Query: 131 NQENEKVDRIARNA 144
+ N D +A A
Sbjct: 184 REANRLADGLANYA 197
>gi|8885984|gb|AAF80328.1|AF156850_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1030
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 623 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 677
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 678 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 724
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 725 GGNEQVDKLVSAGIR 739
>gi|8885932|gb|AAF80302.1|AF156824_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1017
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 610 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 665 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 712 GGNEQVDKLVSAGIRK 727
>gi|77416898|sp|P18042|POL_HV2G1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1464
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G + + + TTN + EL A LT KV +
Sbjct: 1052 YTDGSCNRQSKEGKARYVTDRGRDKV---RVLERTTNQQAELEAFAMTLTDSGP--KVNI 1106
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + V + W+ H G
Sbjct: 1107 IVDSQYVMGIVVGQPTESE-------------SRIVNQIIEDMIKKEAVYVAWVPAHKGI 1153
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1154 GGNQEVDHLVSQGIRQ 1169
>gi|94173|pir||D40899 pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34
Length = 752
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 23/159 (14%)
Query: 1 MDSKHL--REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M +KH YTDG+ G G + K++S ET+ +E ++
Sbjct: 443 MTAKHPIPNGTVVYTDGS------KTGVGAYVI---GNKVVSKQFNETSPQIVECQVVLE 493
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L +P + + +DSSYV + K
Sbjct: 494 VLE--AFPGPLNIVSDSSYVVNAVNLLETAGIIRPSSRVAGIFQKIQITLSNRR-----F 546
Query: 119 KVDLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
V + ++ H+G N+ DR + A + +I
Sbjct: 547 PVFVTHVRAHSGLPGPMSSGNDLADRATKLMAAALSTQI 585
>gi|327458287|gb|AEA76583.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLADTTNQQTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEXLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|327458245|gb|AEA76562.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKAVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325634918|gb|ADZ32857.1| pol protein [Human immunodeficiency virus 1]
Length = 884
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325634706|gb|ADZ32672.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|306477861|gb|ADM89305.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477705|gb|ADM89227.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477571|gb|ADM89160.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LADTTNQKAELQAVHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ DS YV G + ++ + + + KV L W+ H
Sbjct: 494 NIVMDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|288899136|gb|ADC67100.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAXHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|257146448|emb|CAT00594.1| gag/pol precursor [HIV-1 M_02CD.KS069]
Length = 1429
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KIIS E T N+ + AI +V
Sbjct: 1022 YVDGAANRETKLGKAGY---VTDRGRQKIISLTE---TTNQKTELHAIHLALQDSG-AEV 1074
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1075 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 1121
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1122 GIGGNEQVDKLVSNGIRK 1139
>gi|256011702|gb|ACU55707.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVIPLADTTNQQTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEXLINKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|256010982|gb|ACU55347.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|255984644|gb|ACU46394.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|255984622|gb|ACU46383.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTDTTNQKTELQAIQL----ALQDSGLEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 94 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRKI 159
>gi|255984330|gb|ACU46237.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNXGRQKVIPLTDTTNQKTELQAIHLALQXSG-----SEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKXI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|251779648|ref|ZP_04822568.1| ribonuclease HI [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083963|gb|EES49853.1| ribonuclease HI [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 317
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 1 MDSKHLRE-VHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELM---- 54
+D K+ + +H Y DG+ + +GV++ + E I SG K +N + +
Sbjct: 66 LDGKYPNDCLHIYVDGSYNICTSQYSYGVVVVKDNIVEYIDSGVGKNDPDNNIRQIAGEL 125
Query: 55 -AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
AIK + + + Y + ++ + K ++ +
Sbjct: 126 KGAIKGVEYALSCGEKKVVIFHDYAGICYHATGAWERKEASSKAYYKRMQEL-------- 177
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ +V + H G+ NE D + A +K+
Sbjct: 178 MNNGIEVIFVKVDSHTGDFFNELADEKCKEALEIKSDKV 216
>gi|222428519|gb|ACM50145.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 656 VTDSQYAIGVI-------------QAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 703 GGNEQVDKLVSNGIRK 718
>gi|159031797|dbj|BAF91870.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 404 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIYLALQ-----DSGSEVNI 458
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 459 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 505
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 506 GGNEQVDKL 514
>gi|156254395|gb|ABU62687.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 56 VTDSQYALGIIQARPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 103 GGNEKVDKLVSDGIRK 118
>gi|113171663|gb|ABI30934.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|114430793|dbj|BAF31595.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|32399667|emb|CAD59562.1| gag-pol fusion protein [Human immunodeficiency virus 1]
Length = 1437
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1030 YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQ-----DSGPEVNI 1084
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 1085 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIELLIKKEKVYLAWVPAHKGI 1131
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1132 GGNEQVDKLVSSGIRK 1147
>gi|22596359|gb|AAN03137.1|AF457066_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ N
Sbjct: 696 GIGGNEKVDKLVSNGIRK 713
>gi|14160854|gb|AAK12968.1| pol [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEELIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRK 714
>gi|327458331|gb|AEA76605.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|325636541|gb|ADZ34244.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVISLPDTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVR 715
>gi|325634730|gb|ADZ32693.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|312601915|gb|ADQ92514.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|306478225|gb|ADM89487.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KGK+K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGKQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 541 GIGGNEQVDKLVSNGIRK 558
>gi|306477863|gb|ADM89306.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289469816|gb|ADC96563.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 496 VTDSQYAIGIIQTQPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256010927|gb|ACU55320.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V L
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRRKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNL 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 704 GGNEQVDKLVSNGIRK 719
>gi|255984792|gb|ACU46468.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGHAG 130
+DS Y + +J + +E + KV L W+ H G
Sbjct: 96 VSDSQYAIGII--------------QAQPDKSESEJVSQIIEQXIKKEKVYLTWVPAHKG 141
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 142 IGGNEQVDKLVSXGIRK 158
>gi|255984102|gb|ACU46123.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|255983926|gb|ACU46035.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 540 YVDGAANRETXXGKAGYVTNRGRQKVVS----LNDTTNQQTELQAIYLALQDSGL-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|217038369|gb|ACJ76655.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 655 VTDSQYALGIIQGQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|167832986|gb|ACA02095.1| pol protein [Human immunodeficiency virus 1]
Length = 717
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 540 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVTLTETTNQKTELH 579
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 580 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 640 GIGGNEQVDKLVSSGIRK 657
>gi|170778923|gb|ACB36861.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKJGKAGYVTDRGRQKVVPLTDTTNQKTELXAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|121645209|gb|ABM63566.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSAGIRK 718
>gi|86560245|gb|ABD04299.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANKETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|46254415|gb|AAS86173.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELHAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|37221504|gb|AAQ89880.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221502|gb|AAQ89879.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|2258473|gb|AAC71058.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVT----LTDTTNQKTELEAIHLALQDAGL-EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|25166629|gb|AAN73438.1|AF484477_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1432
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1025 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1077
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1078 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1124
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1125 GIGGNEQVDKLVSNGIRKI 1143
>gi|85700535|gb|ABC74650.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG + G + +G++K++S E ++ + +V +
Sbjct: 592 YVDGTANRET-KMGKAGYVTDRGRQKVVSLTETTNQKAELQAIQL----ALQDSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKERIYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|73913814|gb|AAZ91793.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 592 YVDGAATRETKIGKAGYVTDRGRQKVVSLSETTNQKAELQAIQLALQ-----DSGSEANI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 694 GGNEQVDKLVSKGIRK 709
>gi|62997608|gb|AAY24663.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|327458333|gb|AEA76606.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477549|gb|ADM89149.1| pol protein [Human immunodeficiency virus 1]
Length = 716
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVP---LADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VMDSQYV-------------LGIIQAQPDKSESGLVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|304347435|gb|ADM25280.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187582|gb|ADC42284.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187556|gb|ADC42272.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984918|gb|ACU46531.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984656|gb|ACU46400.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984550|gb|ACU46347.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984112|gb|ACU46128.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255984030|gb|ACU46087.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255983940|gb|ACU46042.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|238734280|gb|ACR55504.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + ++ + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDSSESEIVNLIIEQLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|261419559|ref|YP_003253241.1| hypothetical protein GYMC61_2143 [Geobacillus sp. Y412MC61]
gi|319766375|ref|YP_004131876.1| ribonuclease H [Geobacillus sp. Y412MC52]
gi|261376016|gb|ACX78759.1| ribonuclease H [Geobacillus sp. Y412MC61]
gi|317111241|gb|ADU93733.1| ribonuclease H [Geobacillus sp. Y412MC52]
Length = 221
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 22/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-- 65
EV Y DG GG G ++ YK + A A
Sbjct: 73 EVVVYFDGGFDHETSQGGAGAVVYYKQNDHRYRLRANRRLGEIKSNNEAEYAAFWFVMQL 132
Query: 66 -------PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
V DS V K S ++ + + +
Sbjct: 133 LEELGVRHLPVTFRGDSHVVLKQLSGDWPCFEDDYN-----------AWLDRIEAKLREL 181
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ + ++N++ D +AR A
Sbjct: 182 DIQPVYEP--IARKQNKEADSLARQA 205
>gi|156037374|ref|XP_001586414.1| hypothetical protein SS1G_12398 [Sclerotinia sclerotiorum 1980]
gi|154697809|gb|EDN97547.1| hypothetical protein SS1G_12398 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 678
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH Q NE D +A+ A
Sbjct: 472 EISLNWVPGHTSVQGNELADSLAKEA 497
>gi|156046148|ref|XP_001589626.1| hypothetical protein SS1G_09348 [Sclerotinia sclerotiorum 1980]
gi|154693743|gb|EDN93481.1| hypothetical protein SS1G_09348 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 806
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH Q NE D +A+ A
Sbjct: 715 EISLNWVPGHTSVQGNELADSLAKEA 740
>gi|156044024|ref|XP_001588568.1| hypothetical protein SS1G_10115 [Sclerotinia sclerotiorum 1980]
gi|154694504|gb|EDN94242.1| hypothetical protein SS1G_10115 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 650
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH Q NE D +A+ A
Sbjct: 591 EISLNWVPGHTSVQGNELADSLAKEA 616
>gi|148469897|gb|ABQ65886.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|114430963|dbj|BAF31748.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|37221262|gb|AAQ89762.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|36365390|gb|AAQ86611.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ ++ +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|4544460|gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 11/136 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGA GNPG G +LR N A + L + Y
Sbjct: 161 VKLNTDGASRGNPGFATAGGVLRDHNG-----AWIGGFAVNIGVCSAPLAELWGVYYGLF 215
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + V + + L F+ ++ H
Sbjct: 216 IAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRI------SH 269
Query: 129 AGNQENEKVDRIARNA 144
+ N D +A A
Sbjct: 270 VYREANRLADGLANYA 285
>gi|83722748|gb|ABC41648.1| pol protein [Feline immunodeficiency virus]
Length = 1136
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DGA G GW E E +N E A AL A ++
Sbjct: 606 YIDGARKKGQKARAGW------WKNSTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 659
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 660 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 703
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 704 IPGNKEIDEL 713
>gi|71726033|gb|AAZ39162.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S E T N+ + AI+ +V
Sbjct: 596 YVDGASNRETKQGKAGY---VTDRGRQKAVSLTE---TTNQKAELQAIQLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRRI 714
>gi|325637356|gb|ADZ34927.1| pol protein [Human immunodeficiency virus 1]
gi|325637379|gb|ADZ34947.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVINLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRRI 714
>gi|319444241|gb|ADV58247.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|319444232|gb|ADV58239.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|319444203|gb|ADV58213.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|319444164|gb|ADV58178.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|319444154|gb|ADV58169.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|319444146|gb|ADV58162.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|319444137|gb|ADV58154.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|306477797|gb|ADM89273.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|300432009|gb|ADK12898.1| pol protein [Human immunodeficiency virus 1]
gi|300432018|gb|ADK12906.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|300431989|gb|ADK12880.1| pol protein [Human immunodeficiency virus 1]
gi|300431999|gb|ADK12889.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|288187781|gb|ADC42379.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|282598115|gb|ADA83347.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRESKLGRAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSELELVNLIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSRGIRK 713
>gi|256011680|gb|ACU55696.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I +TTN + EL A + A +V +
Sbjct: 593 YVDGAASRETKLGKAGYVTNRGRQKVIS---LTDTTNQKTELQAILLAXXXXGL--EVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 648 VTDSQYAXGX--------IQAQPDTSESELVNQIXEQLIKKE-----KVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 695 GGNEQVDKLVSAGIR 709
>gi|256011512|gb|ACU55612.1| pol protein [Human immunodeficiency virus 1]
Length = 831
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011400|gb|ACU55556.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|256010970|gb|ACU55341.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGPEVNV 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|255984208|gb|ACU46176.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANREXKIGKAGYVTDKGRQKVISLNDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|226348696|gb|ACO50667.1| pol protein [Human immunodeficiency virus 1]
Length = 751
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIHLALR-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|222428330|gb|ACM49994.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|213495576|gb|ACJ49044.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|162330183|pdb|2VG5|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
gi|162330185|pdb|2VG6|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
gi|162330187|pdb|2VG7|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 557
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|113171655|gb|ABI30927.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|114801252|gb|ABI79852.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVRQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|55275257|gb|AAV49469.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G + +G++K +S + T N+ + AI +V +
Sbjct: 596 YVDGAANRDT-KMGKAGYVTDRGRQKGVSILD---TTNQKTELQAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 698 GGNDQVDKLVSAGIRK 713
>gi|10436151|gb|AAG16828.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|24753962|gb|AAN64087.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|10436103|gb|AAG16785.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|10436160|gb|AAG16836.1| pol protein [Human immunodeficiency virus 1]
gi|300431953|gb|ADK12848.1| pol protein [Human immunodeficiency virus 1]
gi|300431962|gb|ADK12856.1| pol protein [Human immunodeficiency virus 1]
gi|300431971|gb|ADK12864.1| pol protein [Human immunodeficiency virus 1]
gi|300431980|gb|ADK12872.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|10436170|gb|AAG16844.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|10436113|gb|AAG16794.1| pol protein [Human immunodeficiency virus 1]
gi|300431818|gb|ADK12727.1| pol protein [Human immunodeficiency virus 1]
gi|300431827|gb|ADK12735.1| pol protein [Human immunodeficiency virus 1]
gi|300431836|gb|ADK12743.1| pol protein [Human immunodeficiency virus 1]
gi|300431845|gb|ADK12751.1| pol protein [Human immunodeficiency virus 1]
gi|300431854|gb|ADK12759.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|42592278|emb|CAF29000.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 346
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + I + A++ +V +
Sbjct: 177 YVDGAANRETRLGKAGYVTDKGRHKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 231
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 232 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 278
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 279 GGNEQVDKLVSAGVRK 294
>gi|326416778|gb|ADZ73242.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416774|gb|ADZ73240.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416768|gb|ADZ73237.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416762|gb|ADZ73234.1| pol protein [Human immunodeficiency virus 1]
gi|326416772|gb|ADZ73239.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416716|gb|ADZ73211.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306477931|gb|ADM89340.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288899146|gb|ADC67105.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|256011588|gb|ACU55650.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAKPDQSESEXVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|256011502|gb|ACU55607.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 558 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 613 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 660 GGNEQVDKLVSTGIRK 675
>gi|256011462|gb|ACU55587.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984682|gb|ACU46413.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELXAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984436|gb|ACU46290.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELHAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984326|gb|ACU46235.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAAXRETKLGKAGYVTDRGRQKVVPLXDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984196|gb|ACU46170.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGXQKVVSLTBTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|238733923|gb|ACR55188.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLQVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|222428370|gb|ACM50026.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAKPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|133711120|gb|ABO36263.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 12 YTDGACSGN----PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
Y DGA GN G G+ + KG++KI+S E T N+ + AI
Sbjct: 594 YVDGA--GNRETKQGKAGY---VTDKGRQKIVSFTE---TTNQKTELHAIHLALQDSE-S 644
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+V + TDS Y G + + + + + +V L W+
Sbjct: 645 EVNIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEKIIEKERVYLSWVPA 691
Query: 128 HAGNQENEKVDRIARNAAVS 147
H G NE++D++ +
Sbjct: 692 HKGIGGNEQIDKLVSSGIRK 711
>gi|114430943|dbj|BAF31730.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|112351459|gb|ABI15250.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSEAEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|37221260|gb|AAQ89761.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|22596389|gb|AAN03164.1|AF457069_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRQTKLGKAGYVTDRGRQKVVSLPETTNQKTELYAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIEKDRVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|8885930|gb|AAF80301.1|AF156823_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1016
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 609 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 664 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 710
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 711 GGNEQVDKLVSAGIRK 726
>gi|324519243|gb|ADY47325.1| Ribonuclease H1 [Ascaris suum]
Length = 245
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALKYP 66
Y DGA G G G+ + +G + ++ ++ +
Sbjct: 69 VVYCDGAYDWLTGKAGIGIFWGPSDPRNLHLAVTGCKITNIRAEVQAVSIAILQASSLKM 128
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ + TD ++ K + W++KW++NGW+ + ++NID K + KV + +
Sbjct: 129 QRICIKTDCNFAVKVINLWMEKWRKNGWRKASGAHIENIDDIKKLNDRLELLKVRIEHVY 188
Query: 127 GHA 129
H
Sbjct: 189 AHQ 191
>gi|306477997|gb|ADM89373.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANREAKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477815|gb|ADM89282.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|259122622|gb|ACV92593.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLVGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|288899110|gb|ADC67087.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|256011012|gb|ACU55362.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDQSE-------------SEIVSKIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|256010881|gb|ACU55297.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPNQSE-------------SELVNQIIEQLIKKEKIYLXWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|242788493|ref|XP_002481230.1| hypothetical protein TSTA_039900 [Talaromyces stipitatus ATCC
10500]
gi|218721377|gb|EED20796.1| hypothetical protein TSTA_039900 [Talaromyces stipitatus ATCC
10500]
Length = 159
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 98 DKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GHA EN+ D A+ A S
Sbjct: 59 STDITCAAWPLRKRLPYTKSGSIQIRWVPGHAKIPENKVADLAAKEGAASI 109
>gi|170778909|gb|ACB36854.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|164415857|gb|AAU14922.2| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 699 GIGGNEQVDKLVSNGIRKI 717
>gi|158967428|gb|ABW86769.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIRKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|156037426|ref|XP_001586440.1| hypothetical protein SS1G_12425 [Sclerotinia sclerotiorum 1980]
gi|154697835|gb|EDN97573.1| hypothetical protein SS1G_12425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 292
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH Q NE D +A+ A
Sbjct: 126 EISLNWVPGHTSVQGNELADSLAKEA 151
>gi|156050867|ref|XP_001591395.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980]
gi|154692421|gb|EDN92159.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++ L W+ GH Q NE D +A+ A
Sbjct: 281 EISLNWVPGHTSVQGNELADSLAKEA 306
>gi|148745869|emb|CAK49323.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S ETTN + EL A L +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTNKGRQKVVS--LAETTNQKAELHAI--NLALQDSGSEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIRKEKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|114430953|dbj|BAF31739.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVISLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|33331456|gb|AAQ10902.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAINL----ALQDSGPEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRKI 714
>gi|306478221|gb|ADM89485.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|270160981|gb|ACZ63342.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|289469794|gb|ADC96552.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRET-KMGKAGYVTNRGRQKVVS--LADTTNQKTELQAIHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288187768|gb|ADC42374.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984118|gb|ACU46131.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|255984020|gb|ACU46082.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|256252344|dbj|BAH97380.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|256252334|dbj|BAH97371.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|195409358|gb|ACF95931.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + KG++K++S E T N+ + AI P +V
Sbjct: 595 YVDGAAXRETKXGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSGP-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + V L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEXVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|36365408|gb|AAQ86627.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ ++ +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEINI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRKI 713
>gi|14030516|gb|AAK52931.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSAGIRK 545
>gi|8885926|gb|AAF80299.1|AF156821_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1017
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 610 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQETELQAIHLALQ-----DSGLEVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 665 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 712 GGNEQVDKLVSAGIRK 727
>gi|325634627|gb|ADZ32603.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|306477927|gb|ADM89338.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477859|gb|ADM89304.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477675|gb|ADM89212.1| pol protein [Human immunodeficiency virus 1]
gi|306477919|gb|ADM89334.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477599|gb|ADM89174.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRDTRLGKAGYVTDRGRQKIISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K ++ L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSESELVNNIIEQLIKKE-------------RIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 543 GGNEKVDKLVSAEIRK 558
>gi|289469810|gb|ADC96560.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187902|gb|ADC42438.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256010998|gb|ACU55355.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYITDRGRQKVVPLTDTTNXKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010799|gb|ACU55256.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQESG-----SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984460|gb|ACU46302.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|238733949|gb|ACR55211.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRQTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 695 GGNEKVDKLVSSGIRK 710
>gi|238633513|gb|ACR51533.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|86277588|gb|ABC88310.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQSQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|55275117|gb|AAV49343.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 698 GGNDQVDKLVSAGIRK 713
>gi|38491916|gb|AAR22281.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 655 NIVTDSQYA--------LGIIQAQPDRSDSELVNLIIEKLIEKE-----KVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRK 719
>gi|22596284|gb|AAN03070.1|AF457058_2 pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + +V L W+ H
Sbjct: 652 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------RVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|4204992|gb|AAD10872.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALE-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|25166921|gb|AAN73700.1|AF484507_1 truncated gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1272
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ V R + K ++ + T +A + + +V
Sbjct: 1022 YVDGAASRETKLGKAGY-VTDRGRQKVVSLTETTNQKTELHAIYLALLDS------GSEV 1074
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ K+ L W+ H
Sbjct: 1075 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KIYLSWVPAHK 1121
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1122 GIGGNEQVDKLVSSGIRK 1139
>gi|8885982|gb|AAF80327.1|AF156849_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1025
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 618 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 672
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 673 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 719
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 720 GGNEQVDKLVSAGIR 734
>gi|334697|gb|AAA91931.1| pol polyprotein [Simian immunodeficiency virus]
gi|55982837|gb|AAV69858.1| Pol polyprotein [SIV vector pCLN8]
Length = 1056
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + ++TTN + EL A + AL +++
Sbjct: 644 YVDGSCNKQSKEGKAGYITDRGKDKV---KVLEQTTNQQAELEAFLMALADSGPKANIIV 700
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + ++ + W+ H G
Sbjct: 701 --DSQYVMGIITGCPTESE-------------SRLVNQIIEEMIKKTEIYVAWVPAHKGI 745
Query: 132 QENEKVDRIARNAAVS 147
N+++D +
Sbjct: 746 GGNQEIDHLVSQGIRQ 761
>gi|325714|gb|AAA43933.1| pol protein [Human immunodeficiency virus 2]
Length = 1049
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G + + + TTN + EL A LT KV +
Sbjct: 637 YTDGSCNRQSKEGKARYVTDRGRDKV---RVLERTTNQQAELEAFAMTLTDSGP--KVNI 691
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + V + W+ H G
Sbjct: 692 IVDSQYVMGIVVGQPTESE-------------SRIVNQIIEDMIKKEAVYVAWVPAHKGI 738
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 739 GGNQEVDHLVSQGIRQ 754
>gi|77416888|sp|P20892|POL_HV1OY RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1434
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1027 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1082 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1128
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1129 GGNEQVDKLVSAGIRK 1144
>gi|325636584|gb|ADZ34280.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYITDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|313574246|dbj|BAJ41070.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478273|gb|ADM89511.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477943|gb|ADM89346.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477921|gb|ADM89335.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477915|gb|ADM89332.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477843|gb|ADM89296.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477801|gb|ADM89275.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306477687|gb|ADM89218.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|270160973|gb|ACZ63335.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 642 GGNEKVDKLVSAGIRK 657
>gi|288187739|gb|ADC42360.1| pol protein [Human immunodeficiency virus 1]
Length = 668
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + +TTN + EL A AL +
Sbjct: 540 YVDGAANRDTKLGKAGYVTDKGRQKVVT---LTDTTNQKTELQAIYLALQDSGVEANI-- 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011748|gb|ACU55730.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIHAQPDKSESEXVSQIIEQLIXKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 698 GGNEQVDXLVSAGIRK 713
>gi|256011580|gb|ACU55646.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A+K +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALK-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAIPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011098|gb|ACU55405.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIFLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + +K KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEHLIKKE-------------KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011056|gb|ACU55384.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRXTXXGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIHAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984940|gb|ACU46542.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANXETKLGKAGYVTDRGREKVVPLTDTTNQKTELQAIXLALQ-----DSELEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|238633428|gb|ACR51463.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|226348548|gb|ACO50593.1| pol protein [Human immunodeficiency virus 1]
Length = 735
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVPLNDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|242822065|ref|XP_002487807.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712728|gb|EED12153.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 128
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + + W+ GHA +NE D A+ A S
Sbjct: 32 WPLRERLPHTKSGSIQIRWVPGHAEIPKNEAADLAAKEGAASI 74
>gi|37221236|gb|AAQ89749.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|4205010|gb|AAD10888.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGTAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKNESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|13095248|gb|AAK12200.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TD+ Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDTQYALGIIQAQPDQSE-------------SELVSQIIEQLIRKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|9931091|emb|CAC05362.1| gag-pol precursor polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGASNRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELQAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYQSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|325637363|gb|ADZ34933.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVINLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRRI 714
>gi|312601991|gb|ADQ92551.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 708 GGNEQIDKLVSAGIRK 723
>gi|312601816|gb|ADQ92466.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306477813|gb|ADM89281.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306477809|gb|ADM89279.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306477795|gb|ADM89272.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEQVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306416336|gb|ADM87015.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAXSRETKLGKAGY---VTDRGRKKVVSLTE---TTNQKTELHAIHLALQDSE-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|295314188|gb|ADF97436.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQSQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|288187674|gb|ADC42328.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRGTKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEK+D++
Sbjct: 543 GGNEKIDKLVSAGIRK 558
>gi|238633825|gb|ACR51789.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|222428534|gb|ACM50157.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGILQAQPDQSE-------------SELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|114801340|gb|ABI79931.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|63098344|gb|AAY32391.1| pol protein [Human immunodeficiency virus 1]
gi|212383275|gb|ACJ25925.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 592 YVDGAANRETKVGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSHGIRK 709
>gi|37221412|gb|AAQ89835.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGVRK 657
>gi|14289984|gb|AAK59172.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTE--TTNQKTELHAIXLALKDSGP--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKDKIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSRGIRK 713
>gi|25166821|gb|AAN73610.1|AF484497_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|50543706|ref|XP_500019.1| YALI0A12683p [Yarrowia lipolytica]
gi|49645884|emb|CAG83948.1| YALI0A12683p [Yarrowia lipolytica]
Length = 276
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 11 AYTDGACSGN--PGP-GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI----KALTAL 63
Y DGA + N GP G GV + ++ ++AAI +A+ +
Sbjct: 149 VYVDGAYARNGQGGPQAGVGVWFGRCNPMNVSEPLAGPIQTSQRAVLAAILKAYEAIATM 208
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKT 101
+ +YT+S+Y ++W + WQ NGW SD
Sbjct: 209 NNGLQYEIYTESTYAIDCLTKWHQMWQNNGWVNSDGDP 246
>gi|325637387|gb|ADZ34954.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVINLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRRI 714
>gi|312601801|gb|ADQ92460.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306477471|gb|ADM89110.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|302594694|gb|ADL59535.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NIVTDSQYGLGIIQAQPDRSESEIVNRIIEKLIEKD-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 101 GIGGNEQVDKLVSTGIRK 118
>gi|270485078|gb|ACZ82320.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|289469800|gb|ADC96555.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN R EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVS---LSDTTNQRTELQAIHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187280|gb|ADC92219.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+++ + T N+ + AI +V
Sbjct: 540 YVDGAANRETXXGKAGY---ITDKGRQKVVTLTD---TTNQKTELKAIHLALQDSGV-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHT 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 640 GIGGNEQIDKLVSAGIRK 657
>gi|255708281|dbj|BAH96497.1| Pol [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRRKAISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKDKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|238733914|gb|ACR55180.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + K+TTN R EL A AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQQVVS---LKDTTNQRAELQAIYLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIPAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|238633519|gb|ACR51537.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633431|gb|ACR51465.1| pol protein [Human immunodeficiency virus 1]
gi|238633440|gb|ACR51471.1| pol protein [Human immunodeficiency virus 1]
gi|238633510|gb|ACR51531.1| pol protein [Human immunodeficiency virus 1]
gi|238633798|gb|ACR51771.1| pol protein [Human immunodeficiency virus 1]
gi|238633804|gb|ACR51775.1| pol protein [Human immunodeficiency virus 1]
gi|238633810|gb|ACR51779.1| pol protein [Human immunodeficiency virus 1]
gi|238633816|gb|ACR51783.1| pol protein [Human immunodeficiency virus 1]
gi|238633822|gb|ACR51787.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633425|gb|ACR51461.1| pol protein [Human immunodeficiency virus 1]
gi|238633437|gb|ACR51469.1| pol protein [Human immunodeficiency virus 1]
gi|238633645|gb|ACR51644.1| pol protein [Human immunodeficiency virus 1]
gi|238633654|gb|ACR51650.1| pol protein [Human immunodeficiency virus 1]
gi|238633795|gb|ACR51769.1| pol protein [Human immunodeficiency virus 1]
gi|238633801|gb|ACR51773.1| pol protein [Human immunodeficiency virus 1]
gi|238633807|gb|ACR51777.1| pol protein [Human immunodeficiency virus 1]
gi|238633813|gb|ACR51781.1| pol protein [Human immunodeficiency virus 1]
gi|238633819|gb|ACR51785.1| pol protein [Human immunodeficiency virus 1]
gi|238633828|gb|ACR51791.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633422|gb|ACR51459.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|119507331|dbj|BAF42553.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNQGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|119507268|dbj|BAF42506.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNLIIEELIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|37221386|gb|AAQ89822.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDKGRQKVVS--LTDTTNQKTELQAIYLALQDSGV--EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|37221384|gb|AAQ89821.1| pol protein [Human immunodeficiency virus 1]
gi|37221388|gb|AAQ89823.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDKGRQKVVS--LTDTTNQKTELQAIYLALQDSGV--EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|7657890|emb|CAB89144.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKAISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|327458191|gb|AEA76535.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANKETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|326370912|gb|ADZ56659.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDTTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYMALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|325638350|gb|ADZ35774.1| pol protein [Human immunodeficiency virus 1]
gi|325638426|gb|ADZ35837.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|306477551|gb|ADM89150.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVP---LADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VMDSQYV-------------LGIIQAQPDKSESGLVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|281331908|emb|CAY83124.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1433
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 1026 YVDGAANRETKQGKAGY--------------------XTDRGRQKVVSLTETTNQKTELQ 1065
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + T ++ + + + KV L W+ H
Sbjct: 1066 AIYLALQDSGAEVNIVTDSQYALGIIQAQPDTSESELVNQIIEQLIQKDKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRK 1143
>gi|256010777|gb|ACU55245.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA N G G+ + + ++K+IS + T N+ + AI P +V
Sbjct: 596 YVDGAANRENKLGKAGY---VTDRXRQKVISITD---TTNQKTELQAIYLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + E + KV L W+ H
Sbjct: 649 NVVTDSQYA-------------LGIIQAQPDKSESELVSLIIEELIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|255984728|gb|ACU46436.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKAVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984164|gb|ACU46154.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|224986413|gb|ACN74968.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 599 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 652 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSPGIRK 716
>gi|238633659|gb|ACR51653.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633525|gb|ACR51541.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633522|gb|ACR51539.1| pol protein [Human immunodeficiency virus 1]
gi|238633528|gb|ACR51543.1| pol protein [Human immunodeficiency virus 1]
gi|238633531|gb|ACR51545.1| pol protein [Human immunodeficiency virus 1]
gi|238633537|gb|ACR51549.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|226348734|gb|ACO50686.1| pol protein [Human immunodeficiency virus 1]
Length = 758
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V L
Sbjct: 374 YVDGAANRETKVGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNL 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 429 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 476 GGNEQVDKLVSSGIRK 491
>gi|226348682|gb|ACO50660.1| pol protein [Human immunodeficiency virus 1]
Length = 753
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|156541724|ref|XP_001600610.1| PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia
vitripennis]
Length = 493
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAA 145
K+ LYW+ GH G + NE D +A AA
Sbjct: 316 RKLFLYWVPGHHGIRGNEIADELAGIAA 343
>gi|119507401|dbj|BAF42616.1| Pol [Human immunodeficiency virus 1]
gi|119507411|dbj|BAF42625.1| Pol [Human immunodeficiency virus 1]
Length = 1010
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|62822729|gb|AAY15128.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 528
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A+ KV +
Sbjct: 416 YTDGSCNRQSKEGKAGYVTDRGRDKVXVLEQTTNQQAELEAFAMALA-----DSGPKVNI 470
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + + + V + W+ H G
Sbjct: 471 IVDSQYVMGIVAGQPTESE-------------SKIVNQIIEDMTKKEAVYVAWVPAHKGI 517
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 518 GGNQEVDHL 526
>gi|37221232|gb|AAQ89747.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVXLTDTTNQKTELQAIQLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221276|gb|AAQ89769.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|329731576|gb|EGG67938.1| hypothetical protein SEVCU144_0428 [Staphylococcus epidermidis
VCU144]
Length = 131
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
+ D A GNPG ++++ + + E N+ E A + AL +
Sbjct: 3 KIHFDAATKGNPGRSACAIIIKENSQRYTFTHDLGEMDNHSAEWAAMLHALEHARELKVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LLYTDS + Q + K + ++ V
Sbjct: 63 NALLYTDSKLIEDSMMQGKV---------KNAKFKVYFENIEILEQSFDLMFVRW----- 108
Query: 128 HAGNQENEKVDRIARN 143
++N++ +++A+
Sbjct: 109 -IPRKQNKEANQLAQQ 123
>gi|325634974|gb|ADZ32906.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|312601828|gb|ADQ92472.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306478043|gb|ADM89396.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477955|gb|ADM89352.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEHLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477811|gb|ADM89280.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|304347449|gb|ADM25287.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + KG++K++S +TTN + EL A + AL +V
Sbjct: 441 YVDGAAXRETKLGKAGY---VTNKGRQKVVS--LTDTTNQKTELQAILLALXDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|289187315|gb|ADC92236.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288899112|gb|ADC67088.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 694 GGNEQIDKLVSSGIRK 709
>gi|288187943|gb|ADC42458.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187906|gb|ADC42440.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187805|gb|ADC42391.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187803|gb|ADC42390.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGTEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187795|gb|ADC42386.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011398|gb|ACU55555.1| pol protein [Human immunodeficiency virus 1]
Length = 870
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256010885|gb|ACU55299.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 593 YVDGAANRDTKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 648 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKIYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIR 709
>gi|255984238|gb|ACU46191.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDSSESELVSQIIEQLIKKDKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238633507|gb|ACR51529.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|226348686|gb|ACO50662.1| pol protein [Human immunodeficiency virus 1]
Length = 725
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLINKERVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|158536528|gb|ABW72764.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S E T N+ + AI+ +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDKGRQKAVSLTE---TTNQKAELQAIQLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSTGIRKI 718
>gi|86560185|gb|ABD04245.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|112361456|gb|ABI15766.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 598 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 637
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 638 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRNESEIVNQIIEEIIKKEKVHLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 698 GIGGNEQIDKLVSSGIRK 715
>gi|22596432|gb|AAN03201.1|AF457075_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIFLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|260533792|gb|ACX45185.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|255984666|gb|ACU46405.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|255984364|gb|ACU46254.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPNKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|238633434|gb|ACR51467.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|222428479|gb|ACM50113.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|186940953|dbj|BAG31088.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|186940943|dbj|BAG31079.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|86277618|gb|ABC88337.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIR 713
>gi|25167041|gb|AAN73808.1|AF484519_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 1027 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLKVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1082 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 1128
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1129 GGNEQVDKLVSNGIRKI 1145
>gi|327458383|gb|AEA76631.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGRAGY---VTDRGRQKVVS--LADTTNQKTELQAIYLALQDSG--SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIHAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSXGIRK 558
>gi|256011078|gb|ACU55395.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984756|gb|ACU46450.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|238633648|gb|ACR51646.1| pol protein [Human immunodeficiency virus 1]
gi|238633671|gb|ACR51661.1| pol protein [Human immunodeficiency virus 1]
gi|238633674|gb|ACR51663.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633534|gb|ACR51547.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|224147290|ref|XP_002336448.1| predicted protein [Populus trichocarpa]
gi|222835041|gb|EEE73490.1| predicted protein [Populus trichocarpa]
Length = 356
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAIKAL-----TALKY 65
DG+ G GP G G +LR I S +N EL A +KA+ +
Sbjct: 222 VDGSSLGKSGPSGIGGVLRNHNGILLGIFSLSVGILDSNVAELKAVVKAIELSASNCRLH 281
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+++ DS+ V + + + + S + + + + F
Sbjct: 282 HKHIIIECDSATVIRWMNNPHNRPWLHHNLFSSIQRLASCFGSLTFT------------- 328
Query: 126 KGHAGNQENEKVDRIARNA 144
H+ + N D +A+
Sbjct: 329 --HSFRESNHMADHMAKQG 345
>gi|194210357|ref|XP_001914869.1| PREDICTED: similar to Pro-Pol [Equus caballus]
Length = 1776
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 20/134 (14%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ +G +++ K + T+ + + A+ +
Sbjct: 717 VFTDGSSNGR-----AALVIGDSCKT-----QQTNETSAQRAELVAVITAFRELSNKEFN 766
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
LY+DS Y+ F Q K + + ++ + H + ++ H+G
Sbjct: 767 LYSDSQYITCLFPQIETATIPVY-----KTAISALLCQLQKLIRERSHPFYVGHVRAHSG 821
Query: 131 -----NQENEKVDR 139
++ NE D+
Sbjct: 822 LPGPIHRGNEIADQ 835
>gi|194210355|ref|XP_001914865.1| PREDICTED: similar to Pro-Pol [Equus caballus]
Length = 2090
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 20/134 (14%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
+TDG+ +G +++ K + T+ + + A+ +
Sbjct: 1272 VFTDGSSNGR-----AALVIGDSCKT-----QQTNETSAQRAELVAVITAFRELSNKEFN 1321
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
LY+DS Y+ F Q K + + ++ + H + ++ H+G
Sbjct: 1322 LYSDSQYITCLFPQIETATIPVY-----KTAISALLCQLQKLIRERSHPFYVGHVRAHSG 1376
Query: 131 -----NQENEKVDR 139
++ NE D+
Sbjct: 1377 LPGPIHRGNEIADQ 1390
>gi|186940983|dbj|BAG31115.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 600 YVDGAANRKTKLGKAGYVTDRGRXKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIKQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|114801360|gb|ABI79949.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|49574282|gb|AAT66812.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESQLVSQIIERLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSFGIRK 558
>gi|3132802|gb|AAC29069.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|25166649|gb|AAN73456.1|AF484479_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1429
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1022 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 1074
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1075 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 1121
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1122 GIGGNEQVDKLVSSGIRK 1139
>gi|61102626|gb|AAX37760.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 73 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRKI 138
>gi|62195119|gb|AAM81781.2| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAINLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSCGIRK 712
>gi|328834192|gb|AEB52629.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 22/137 (16%)
Query: 6 LREVHAYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+R Y DGA + G G+ +R T
Sbjct: 587 MRAETFYVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTN 626
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ +Y + G + ++ + + + KV L
Sbjct: 627 QKTELHAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKVYLS 686
Query: 124 WIKGHAGNQENEKVDRI 140
W+ H G NE+VD++
Sbjct: 687 WVPAHKGIGGNEQVDKL 703
>gi|325634619|gb|ADZ32596.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLTWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGVR 710
>gi|325634612|gb|ADZ32590.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLTWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGVR 710
>gi|325634589|gb|ADZ32570.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLTWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGVR 710
>gi|306478259|gb|ADM89504.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKJGKAGYVTDKGRQKVVSIXDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEXVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478143|gb|ADM89446.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVSI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|256011468|gb|ACU55590.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S +TTN + EL A AL +V +
Sbjct: 595 YVDGAANR-GTKLGKAGYVTDKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIR 711
>gi|255984028|gb|ACU46086.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIR 656
>gi|238633668|gb|ACR51659.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|237874801|gb|ACR27167.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + + + ETTN + EL A L +V +
Sbjct: 598 YVDGASSRETKKGKAGYVTDRGRQR---AVSLTETTNQKAELHAI--QLALQDSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIQKEKVYLSWVPAHKRI 699
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 700 GGNEQVDKL 708
>gi|158967379|gb|ABW86725.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIRKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|140053482|gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 21/140 (15%)
Query: 13 TDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIK---ALTALKYPC 67
DG+C G+P G+G L+R G +++ + + AI
Sbjct: 716 VDGSCIGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAIDMGIT 775
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ +Y+DS + T+ K + L + + L
Sbjct: 776 DMAVYSDSLLSINLIT------------TTSSKFHIHAALIQDIRDKLSLRNFSLN---- 819
Query: 128 HAGNQENEKVDRIARNAAVS 147
H + N+ D +A+ A+S
Sbjct: 820 HTLREGNQSADYLAKLGAMS 839
>gi|86277578|gb|ABC88301.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|37221248|gb|AAQ89755.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTBKGRQKVVSLTDTTNQQTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|17046889|gb|AAL34892.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL +
Sbjct: 599 YVDGAANRETKVGKAGYVTDRGRQKVIT---LTETTNQKAELQAIQLALQDSGSEANI-- 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEGVYLSWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSKGIRK 716
>gi|15281490|gb|AAK94273.1|AF361878_2 pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTDRGRQKVVSISDTTNQKTELHAIYLALQ-----DSGSEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLVKKERVYLSWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|61102634|gb|AAX37767.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 73 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRKI 138
>gi|31980417|dbj|BAC77738.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|328834173|gb|AEB52612.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++G + +A ++ +V
Sbjct: 596 YVDGAANRETKLGKAGY-VTDRGRQKVISLTGTTNQKAELHAIYLALQES------GSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSDSELVNLIIEKLIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|312602004|gb|ADQ92557.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|312601840|gb|ADQ92478.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|306478063|gb|ADM89406.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANREAKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477855|gb|ADM89302.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALR-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|289469852|gb|ADC96581.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 441 YVDGAANRETKXGKAGYVTNRGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGSAVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|288187791|gb|ADC42384.1| pol protein [Human immunodeficiency virus 1]
Length = 573
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011776|gb|ACU55744.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGASNRETKLGKAGYVTDRGRQKVISLSDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLXSSGIRK 716
>gi|256010681|gb|ACU55197.1| pol protein [Human immunodeficiency virus 1]
Length = 862
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETRLGKAGYVTNRXRQKVVPLTDTTNQKTELQXIYLALQ-----DSGAEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 700 GGNEKVDKLVSXGIRK 715
>gi|255984540|gb|ACU46342.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKJGKAGYVTNKGRQKVVSXTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|242763116|ref|XP_002340512.1| hypothetical protein TSTA_065780 [Talaromyces stipitatus ATCC
10500]
gi|218723708|gb|EED23125.1| hypothetical protein TSTA_065780 [Talaromyces stipitatus ATCC
10500]
Length = 190
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
V + W+ H+G + NE+ D+ A+ A
Sbjct: 101 RPVTIQWVPRHSGVEGNEQADQAAKRA 127
>gi|186940963|dbj|BAG31097.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|158536557|gb|ABW72789.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKAVSLTETTNQKAELQAIQIALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIRKI 718
>gi|112351529|gb|ABI15313.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++ E T N+ + AI +V +
Sbjct: 593 YVDGAANRET-KMGKAGYVTDRGRQKVVPLTE---TTNQKTELHAIHLALQDSG-SEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 648 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIR 709
>gi|32351103|gb|AAP76511.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKLGKAGYITDRGRQKVVPITDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRKI 1144
>gi|4510429|gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 314
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 11/132 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDGA GNPG G +LR N A + L + Y +
Sbjct: 158 TDGASRGNPGLASAGGVLRD-----EEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWE 212
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
+ + I + L F+ + ++ H +
Sbjct: 213 RRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRI------SHVYRE 266
Query: 133 ENEKVDRIARNA 144
N D +A A
Sbjct: 267 ANRLADGLANYA 278
>gi|14530238|gb|AAK65971.1|AF286237_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + ++ + + + +V L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGIIQAQPERSESEIVNQIIEKLIEKERVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|3808242|gb|AAC69280.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTEVHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDSSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|328906|gb|AAA75019.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.5 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|328880022|emb|CBY88596.1| Gag-pol polyprotein precursor [Simian immunodeficiency virus]
Length = 1443
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G L + + + E + T N+ + AIK KV +
Sbjct: 1047 YVDGAAEKEGKTGKAGYLTQSGKSKVV----ELDHTTNQQAELIAIKLALEDSK-SKVNI 1101
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + S+ + + + +V L W+ H G
Sbjct: 1102 VTDSQYALRLLSKRPT-------------ETDSELVKEIIELIKGKDEVYLSWVPAHKGI 1148
Query: 132 QENEKVDRIARNAAVSFK 149
N+++D++ +
Sbjct: 1149 GGNQEIDQLVSQGIRKRQ 1166
>gi|313661109|dbj|BAJ41134.1| Pol protein [Human immunodeficiency virus 1]
gi|313661119|dbj|BAJ41143.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VDR+
Sbjct: 698 GGNEQVDRLVSAGVR 712
>gi|306478019|gb|ADM89384.1| pol protein [Human immunodeficiency virus 1]
gi|306478085|gb|ADM89417.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477803|gb|ADM89276.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|270161045|gb|ACZ63398.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011364|gb|ACU55538.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTD---TTNQKTELEAIHLALQDSGV-EV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSKGIR 714
>gi|256011198|gb|ACU55455.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKIVSIADTTNQKTELQAINL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|256010807|gb|ACU55260.1| pol protein [Human immunodeficiency virus 1]
Length = 882
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLNNTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSYGIRK 713
>gi|256010749|gb|ACU55231.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVXSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLXKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|239918427|ref|YP_002957985.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
gi|281415376|ref|ZP_06247118.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
gi|239839634|gb|ACS31431.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 450
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 3/128 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--KYPCK 68
Y DG+ GG + G +E + + A +
Sbjct: 283 VYVDGSVLRGSRIGGAAAVAGPNMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGR 342
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +++DS + ++ G + L + +A +VD W+KG
Sbjct: 343 VTIHSDSRAALAMLNAARRERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKG 402
Query: 128 HAGNQENE 135
H G NE
Sbjct: 403 HVGVHGNE 410
>gi|157274081|gb|ABV28345.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNTGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|156254415|gb|ABU62697.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSTTDTTNQKTELQAIHLALQ-----DSGSEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 103 GGNVQVDKLVSAGIRK 118
>gi|114801272|gb|ABI79870.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|114801458|gb|ABI80037.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114801490|gb|ABI80063.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|11693505|gb|AAC82598.2| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|18073402|emb|CAC87993.1| POL protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I T N+ + AI +V +
Sbjct: 597 YVDGAANRETKIGKAGYVTDKGRQKVIT----LTETTNQKTELEAIHLALQDSGL-EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 699 GGNEQIDKLVSSGIRK 714
>gi|328834357|gb|AEB52775.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDSSDSEIVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|326370579|gb|ADZ56369.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETRLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|325638011|gb|ADZ35485.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|325637988|gb|ADZ35465.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|325637980|gb|ADZ35458.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|325637054|gb|ADZ34674.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|325637004|gb|ADZ34632.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|325636996|gb|ADZ34625.1| pol protein [Human immunodeficiency virus 1]
gi|325637012|gb|ADZ34639.1| pol protein [Human immunodeficiency virus 1]
gi|325637034|gb|ADZ34658.1| pol protein [Human immunodeficiency virus 1]
gi|325637059|gb|ADZ34678.1| pol protein [Human immunodeficiency virus 1]
gi|325637975|gb|ADZ35454.1| pol protein [Human immunodeficiency virus 1]
gi|325638003|gb|ADZ35478.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|306478103|gb|ADM89426.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469828|gb|ADC96569.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSKIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256274574|gb|ACU68507.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSITDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|256011762|gb|ACU55737.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256011538|gb|ACU55625.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +S + T + +A +V
Sbjct: 602 YVDGAANRETKLGRAGY-VTDRGRQKVVSLSDTTNQKTELQAIHLAL------QDSGLEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSAGIRK 719
>gi|256011202|gb|ACU55457.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 558 YVDGASNRETKLGKAGYVTNRGRQKVVSLTNTTNQQTELQAIYLALQ-----DSGLEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 613 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKIYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 660 GGNEQVDKLVSAGIRK 675
>gi|238633516|gb|ACR51535.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V L
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNL 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633157|gb|ACR51233.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633147|gb|ACR51224.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|226348672|gb|ACO50655.1| pol protein [Human immunodeficiency virus 1]
Length = 707
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 374 YVDGASNRETKLGKAGYVTDKGRQKVISLTDTSNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 429 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|158931140|sp|P12502|POL_SIVS4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1449
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 1037 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 1093
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1094 --DSQYVMGIIAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 1138
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1139 GGNQEVDHLVSQGIRQ 1154
>gi|156254413|gb|ABU62696.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKTGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 103 GGNEQIDKLVSAGIRK 118
>gi|119476003|ref|ZP_01616355.1| RNase H [marine gamma proteobacterium HTCC2143]
gi|119450630|gb|EAW31864.1| RNase H [marine gamma proteobacterium HTCC2143]
Length = 47
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+H+V+ +KG +G++EN+ D++A
Sbjct: 15 QRHEVEWRRVKGCSGHRENDIADQLANRGIDEL 47
>gi|114801214|gb|ABI79818.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|47118221|gb|AAT11211.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSINDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|22037885|gb|AAM90222.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 18/141 (12%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
V Y DGA + G G + K + + TTN + EL A + AL
Sbjct: 595 NAVTYYVDGAANRTSKLGKAGYV---TNTGKYRAIELEGTTNQQAELQAVLLALKEGPP- 650
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
++ L TDS YV S + + + E + V L W+
Sbjct: 651 -RMNLVTDSQYVMGIL-------------QSQPEVSTSPLVEQIIQELLGKEAVYLSWVP 696
Query: 127 GHAGNQENEKVDRIARNAAVS 147
H G N +VD++
Sbjct: 697 AHKGIGGNTEVDKLVSRGIRQ 717
>gi|45738221|gb|AAS75879.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKMGKAGYVTDRGRQKIVALTDTTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIR 708
>gi|62467699|gb|AAX83954.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|327458325|gb|AEA76602.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVXQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|312601953|gb|ADQ92533.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306477845|gb|ADM89297.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|289187310|gb|ADC92234.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|282597987|gb|ADA83237.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRRI 714
>gi|256011528|gb|ACU55620.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011436|gb|ACU55574.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S T N+ + AI +V
Sbjct: 596 YVDGAANRETRLGKAGY---ITDRGRQKVVSI---NDTTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TD Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDXQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|256010813|gb|ACU55263.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSIPDTTNQKTELQAIXLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVNEIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|255984060|gb|ACU46102.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQQTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSAGIRK 657
>gi|238635324|gb|ACR52610.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633651|gb|ACR51648.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|238633111|gb|ACR51192.1| pol protein [Human immunodeficiency virus 1]
gi|238633138|gb|ACR51216.1| pol protein [Human immunodeficiency virus 1]
gi|238633167|gb|ACR51242.1| pol protein [Human immunodeficiency virus 1]
gi|238633177|gb|ACR51251.1| pol protein [Human immunodeficiency virus 1]
gi|238635333|gb|ACR52617.1| pol protein [Human immunodeficiency virus 1]
gi|238635338|gb|ACR52621.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|116830483|gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 11/132 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDGA GNPG G +LR N A + L + Y +
Sbjct: 158 TDGASRGNPGLASAGGVLRD-----EEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWE 212
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
+ + I + L F+ + ++ H +
Sbjct: 213 RRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRI------SHVYRE 266
Query: 133 ENEKVDRIARNA 144
N D +A A
Sbjct: 267 ANRLADGLANYA 278
>gi|114801495|gb|ABI80067.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37221508|gb|AAQ89882.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|13095287|gb|AAK12213.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKAVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|41353553|gb|AAS01340.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXRETKIGKAGYVTDRGRQKVVPLTETTNQXTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|328834064|gb|AEB52515.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|326370762|gb|ADZ56529.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIRK 717
>gi|306478005|gb|ADM89377.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNKGKQKVVS---LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477841|gb|ADM89295.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|306477839|gb|ADM89294.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|306477469|gb|ADM89109.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|259122692|gb|ACV92656.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLVVKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|288187664|gb|ADC42323.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|255984162|gb|ACU46153.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKXVTLTDTTNQKTELQAIQLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + V W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIXKEXVYXAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|238633121|gb|ACR51201.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|222428632|gb|ACM50235.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTD---TTNQKTELEAIHLALQDSGL-EV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 650 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 697 GIGGNEQVDKLVSAGIRK 714
>gi|221501867|gb|EEE27620.1| ribonuclease H, putative [Toxoplasma gondii VEG]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 3 SKHLRE----VHAYTDGACSGNPG----PGGWGVLLRYKGKEKIISGGEKETTNNRMELM 54
+R+ ++ YTDGAC N G GV + + N+ +
Sbjct: 348 PARMRDDARILYIYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLMGQPQTNQRAEL 407
Query: 55 AAI 57
AI
Sbjct: 408 QAI 410
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
++ IKGH+GN NEK D++A A
Sbjct: 620 IEFVLIKGHSGNYGNEKADQLACLGAT 646
>gi|119508019|dbj|BAF42416.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNLIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|114801399|gb|ABI79984.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKRERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|13095156|gb|AAK12160.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQATHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYASGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRE 560
>gi|3779268|gb|AAD03316.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+++ E ++ + +V
Sbjct: 1028 YVDGAANRETKQGKAGY---VTDRGRQKVVTLTETTNQKTELQAINL----ALQDSGPEV 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 1081 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHK 1127
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1128 GIGGNEQVDKLVSNGIRK 1145
>gi|14030522|gb|AAK52934.1| pol polyprotein [Human immunodeficiency virus 1]
gi|14030524|gb|AAK52935.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSTGIRK 545
>gi|8885928|gb|AAF80300.1|AF156822_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1024
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 617 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 671
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 672 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 718
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 719 GGNEQVDKLVSAGIRK 734
>gi|87116093|gb|ABD19625.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|324121180|gb|ADY18651.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 601 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 653
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ K+ + W+ H
Sbjct: 654 NIVTDSQYAIGIIQAQPDRSESELVNQIIEKLIEKE-------------KIYMSWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|312601868|gb|ADQ92491.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLMDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478233|gb|ADM89491.1| pol protein [Human immunodeficiency virus 1]
Length = 818
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + ++ + +V
Sbjct: 411 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 463
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 464 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 510
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 511 GIGGNEQVDKLVSTGIRK 528
>gi|306477847|gb|ADM89298.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|259122702|gb|ACV92665.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLVVKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|295883781|gb|ADG57019.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELHAIXLALQ-----DSGPEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|288187828|gb|ADC42401.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011688|gb|ACU55700.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIQKXKVYLAWVPAHKGI 701
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 702 GGNEQVDKL 710
>gi|256010990|gb|ACU55351.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 598 YVDGAANRETKLGKAGY---ITDRGRQKVVS--LTDTTNQKTELQAIYLALQDSG--SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 651 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIQKEKIYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSTGIRK 715
>gi|255984690|gb|ACU46417.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSJXDTTNQKTELQAIHLALQ-----DSGVEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGVRK 158
>gi|255984230|gb|ACU46187.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRXTXXGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|238636097|gb|ACR53267.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 694 GGNEQVDKLVSTGIR 708
>gi|226348576|gb|ACO50607.1| pol protein [Human immunodeficiency virus 1]
Length = 682
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|190411477|gb|ACE78534.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + TTN + EL A L +V +
Sbjct: 602 YVDGAANRETKLGKAGYV---TNKGRQKAVPLTGTTNQKAELQAI--QLALQDSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGVRKI 720
>gi|164415912|gb|AAY24634.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIR 708
>gi|13095433|gb|AAK12271.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIITDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|25166831|gb|AAN73619.1|AF484498_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIQKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|326370922|gb|ADZ56668.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|325638294|gb|ADZ35725.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|325637427|gb|ADZ34989.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEHLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325637419|gb|ADZ34982.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEHLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325637411|gb|ADZ34975.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEHLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|312601830|gb|ADQ92473.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ T N+ + AI +V
Sbjct: 540 YVDGAANRETKSGKAGYA------TDRGRQKVVPLTDTTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|306478125|gb|ADM89437.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477583|gb|ADM89166.1| pol protein [Human immunodeficiency virus 1]
gi|306477585|gb|ADM89167.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|299758794|emb|CBI68502.1| polyprotein [Human immunodeficiency virus 1]
Length = 705
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ K+ L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KIYLSWVPAHK 694
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 695 GIGGNEQVDKL 705
>gi|289187258|gb|ADC92208.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011606|gb|ACU55659.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLNDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESXLVXQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010755|gb|ACU55234.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984730|gb|ACU46437.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKXVSMTDTTNQKTELQAINLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIR 157
>gi|255984452|gb|ACU46298.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI P +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGP-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+ TDS Y +J + +E + K+ L W+ H
Sbjct: 94 NIVTDSQYALGII--------------QAXPDKSESEJVSQIIEQLIKKEKIYLAWVPAH 139
Query: 129 AGNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 140 KGIGGNEQVDKLVSAGIRK 158
>gi|255984266|gb|ACU46205.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|238636033|gb|ACR53210.1| pol protein [Human immunodeficiency virus 1]
gi|238636042|gb|ACR53218.1| pol protein [Human immunodeficiency virus 1]
gi|238636107|gb|ACR53276.1| pol protein [Human immunodeficiency virus 1]
gi|238636142|gb|ACR53307.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 694 GGNEQVDKLVSTGIR 708
>gi|222428672|gb|ACM50267.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSDSELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|224476562|ref|YP_002634168.1| hypothetical protein Sca_1075 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421169|emb|CAL27983.1| conserved hypothetical protein with RNase H domain [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 130
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 13/135 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ D A GNPGP V++ + +I + T N+ E A I AL C
Sbjct: 3 KIFFDAAVKGNPGPASIAVVIVEESNHQIYTKDISPTDNHSAEWEAFIFAL-----ECAE 57
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
D++ V + ++ K K+ V + WI
Sbjct: 58 QQEVDTALVSTDSKLVVDSLEKGFTKNEKFKSYLMEAAKKMKVFDLC----LINWIP--- 110
Query: 130 GNQENEKVDRIARNA 144
+N++ + A+ A
Sbjct: 111 -RAQNKEANHHAQQA 124
>gi|88186440|gb|ABD39703.1| pol protein [Simian immunodeficiency virus]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + + TTN + EL A AL +V +
Sbjct: 593 YVDGAANRESKKGRAGYV---TDRGRYKTRDLENTTNQQAELWAIDLALRDSG--AQVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 648 VTDSQYVMGVLQGLPDQS-------------DSPIVEQIIQQLTQKAAIYLAWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 695 GGNEEVDKL 703
>gi|112497952|gb|ABI20348.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|60194|emb|CAA77622.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEHLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|328834255|gb|AEB52685.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 597 YVDGAANRETKLGRAGY--------------------VTDRGRQKVVSLTETTNQKTELH 636
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 637 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEKLIGKDKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 697 GIGGNEQVDKLVSSGIRK 714
>gi|325638211|gb|ADZ35655.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325637319|gb|ADZ34895.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKVGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|312601893|gb|ADQ92503.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478191|gb|ADM89470.1| pol protein [Human immunodeficiency virus 1]
Length = 847
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 440 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 494
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 495 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 541
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 542 GGNEQVDKLVSTGIRK 557
>gi|306477463|gb|ADM89106.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289187388|gb|ADC92272.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011144|gb|ACU55428.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRVGKAGYVTDRGRQKVVPLTXXTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|255984646|gb|ACU46395.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVIXLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|238733942|gb|ACR55205.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDRSESEIVNRIIEKLIEKE-------------RVYLSWVPAHKGI 702
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 703 GGNEQVDKL 711
>gi|222428375|gb|ACM50030.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDTSESEVVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|147744262|gb|ABQ51078.1| pol protein [Simian immunodeficiency virus]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + + TTN + EL A AL +V +
Sbjct: 593 YVDGAANRESKKGRAGYV---TDRGRYKTRDLENTTNQQAELWAIDLALXDSG--AQVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 648 VTDSQYVMGVLQGLPDQS-------------DSPIVEQIIQQLTQKAAIYLAWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 695 GGNEEVDKL 703
>gi|4205019|gb|AAD10896.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|13095225|gb|AAK12190.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T + + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTYQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRE 558
>gi|49574272|gb|AAT66807.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSPGIRK 558
>gi|308445395|gb|ADO32874.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV + W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYMAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVRK 713
>gi|306478271|gb|ADM89510.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAINIALQDAGP-----EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + V L W+ H G
Sbjct: 496 VXDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306477581|gb|ADM89165.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289469906|gb|ADC96608.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNRGRQKVVPLNDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|263200921|gb|ACY70028.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVSLAETTNQKTELHAIYLALQ-----DSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 655 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIRK 717
>gi|256011234|gb|ACU55473.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDXGRQKVVSIIDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|255984358|gb|ACU46251.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANREXKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 143 GGNEQVDKLVSNGIRK 158
>gi|159031795|dbj|BAF91869.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 404 YVDGAASRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELEAIHLALQDSGL-EV 456
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 457 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 503
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 504 GIGGNEQVDKL 514
>gi|37221193|gb|AAQ89728.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221191|gb|AAQ89727.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221195|gb|AAQ89729.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221250|gb|AAQ89756.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQQTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|16905446|gb|AAL31351.1|L36874_2 pol protein [Human immunodeficiency virus 2]
Length = 1064
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 644 YTDGSCNRTSKEGKAGYVTDRGRDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 698
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 699 IVDSQYVMGIVAGQPTETE-------------SPIVNKIIEEMIKKEAIYVGWVPAHKGL 745
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 746 GGNQEVDHLVSQGIRQ 761
>gi|328569|gb|AAA45053.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 697 GGNEQVDRLVSTGIRK 712
>gi|325637403|gb|ADZ34968.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEHLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325637395|gb|ADZ34961.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEHLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478335|gb|ADM89542.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDKGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306477567|gb|ADM89158.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP---LADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VVDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|289469900|gb|ADC96605.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|289187399|gb|ADC92277.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187537|gb|ADC42263.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011720|gb|ACU55716.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256011500|gb|ACU55606.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTXTTNQKTELEAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256011108|gb|ACU55410.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETXXGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGXEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|256011046|gb|ACU55379.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELEAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984370|gb|ACU46257.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKXKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSTGIRK 158
>gi|190411421|gb|ACE78485.1| pol protein [Human immunodeficiency virus 1]
gi|190411431|gb|ACE78494.1| pol protein [Human immunodeficiency virus 1]
gi|190411441|gb|ACE78503.1| pol protein [Human immunodeficiency virus 1]
gi|190411451|gb|ACE78512.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + TTN + EL A L +V +
Sbjct: 596 YVDGAANRETKLGKAGYV---TNKGRQKAVPLTGTTNQKAELQAI--QLALQDSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRKI 714
>gi|114801175|gb|ABI79783.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|13095199|gb|AAK12178.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNLKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|85700674|gb|ABC74775.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI+ +V
Sbjct: 591 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKAELQAIQLALQDSGL-EV 643
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 644 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 691 GIGGNEQVDKLVSSGIR 707
>gi|88853342|emb|CAJ01215.1| gag-pol precursor [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 1026 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 1065
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 1066 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDISESEIVNQIIEKLIEKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1126 GIGGNEQVDKLVSSGIRK 1143
>gi|77416897|sp|P15833|POL_HV2D2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1465
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A+ +V +
Sbjct: 1050 YTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALAL-----TDSEPQVNI 1104
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + V + W+ H G
Sbjct: 1105 IVDSQYVMGII-------------AAQPTETESPIVAKIIEEMIKKEAVYVGWVPAHKGL 1151
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1152 GGNQEVDHLVSQGIRQ 1167
>gi|71794614|emb|CAI28854.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1434
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1027 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELYAIFLALQ-----DSGSEVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1082 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEQLIGKDKVYLSWVPAHKGI 1128
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1129 GGNEQVDKLVSSGIRK 1144
>gi|328834039|gb|AEB52493.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRDTKLGKAGYVTNKGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIR 718
>gi|328833976|gb|AEB52437.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS + T N+ + AI +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDKGRQKVISLTD---TTNQKTELEAIHLALQDSGL-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLINKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSTGIRK 716
>gi|327458281|gb|AEA76580.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKEGKAGYVTDRGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSESELVC-------------QIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 543 GGNEQIDKLVSKGIR 557
>gi|325635669|gb|ADZ33496.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|306477837|gb|ADM89293.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|306477529|gb|ADM89139.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306416470|gb|ADM87082.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI+ +V
Sbjct: 441 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 541 GIGGNEQIDKLVSSGIRK 558
>gi|295314159|gb|ADF97411.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|270161037|gb|ACZ63391.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288187525|gb|ADC42257.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NEK+D++ +
Sbjct: 543 GGNEKIDKLVSSGIRK 558
>gi|256011604|gb|ACU55658.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|256011370|gb|ACU55541.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKEGKAGYVTDXGXQKIVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVC-------------QIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 698 GGNEQIDKLVSKGIR 712
>gi|226347271|gb|ACO50043.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSETEIVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|222428489|gb|ACM50121.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|190411461|gb|ACE78521.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + TTN + EL A L +V +
Sbjct: 596 YVDGAANRETKLGKAGYV---TNKGRQKAVPLTGTTNQKAELQAI--QLALQDSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRKI 714
>gi|38491566|gb|AAR21969.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRENKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|326370884|gb|ADZ56634.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 600 YVDGAANRETKLGKAGY--------------------ITNRGRQKVISLTDTTNQKTELH 639
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 640 AIYLALQDSGLEVNIVTDSQYGLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 700 GIGGNEQVDKLVSSGIRK 717
>gi|325638185|gb|ADZ35633.1| pol protein [Human immunodeficiency virus 1]
gi|325638216|gb|ADZ35659.1| pol protein [Human immunodeficiency virus 1]
gi|325638221|gb|ADZ35663.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325635622|gb|ADZ33455.1| pol protein [Human immunodeficiency virus 1]
gi|325635630|gb|ADZ33462.1| pol protein [Human immunodeficiency virus 1]
gi|325635638|gb|ADZ33469.1| pol protein [Human immunodeficiency virus 1]
gi|325635646|gb|ADZ33476.1| pol protein [Human immunodeficiency virus 1]
gi|325635654|gb|ADZ33483.1| pol protein [Human immunodeficiency virus 1]
gi|325635662|gb|ADZ33490.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|306477445|gb|ADM89097.1| pol protein [Human immunodeficiency virus 1]
gi|306477449|gb|ADM89099.1| pol protein [Human immunodeficiency virus 1]
gi|306477451|gb|ADM89100.1| pol protein [Human immunodeficiency virus 1]
gi|306477453|gb|ADM89101.1| pol protein [Human immunodeficiency virus 1]
gi|306477455|gb|ADM89102.1| pol protein [Human immunodeficiency virus 1]
gi|306477457|gb|ADM89103.1| pol protein [Human immunodeficiency virus 1]
gi|306477459|gb|ADM89104.1| pol protein [Human immunodeficiency virus 1]
gi|306477465|gb|ADM89107.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289187242|gb|ADC92200.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRESKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187594|gb|ADC42290.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRESKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011590|gb|ACU55651.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 654 VTDSQY-------------XLGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|213495556|gb|ACJ49026.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|148745875|emb|CAK49326.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYSLGIIQAQPDKSESELVNQIIEKLIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|148745855|emb|CAK49316.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 962
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ P +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIQLALQDSGP-EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|114801480|gb|ABI80055.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114801500|gb|ABI80071.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|87083822|gb|ABD19484.1| pol protein [Simian immunodeficiency virus]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGKQKIIPLTETTNQKAELQAIQLALQ-----DSGPEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q SD + V I + E KV L W+ H G
Sbjct: 654 VTDSQYALGIL--------QAQPDQSDSELVNQIIENLIKKE-----KVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|28872823|ref|NP_789740.1| Pol [Human immunodeficiency virus 1]
Length = 995
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 588 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 643 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 689
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 690 GGNEQVDKLVSAGIRK 705
>gi|61102545|gb|AAX37690.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|61102650|gb|AAX37781.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 20 YVDGAANKKTKLGRAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 73 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRKI 138
>gi|325638168|gb|ADZ35619.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325638156|gb|ADZ35609.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|306477589|gb|ADM89169.1| pol protein [Human immunodeficiency virus 1]
gi|306477591|gb|ADM89170.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477579|gb|ADM89164.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477577|gb|ADM89163.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477521|gb|ADM89135.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306416464|gb|ADM87079.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAVSRESKLGKAGY---VTDRGRQKVVSLIE---TTNQKSELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEVVSQIIEELIKKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594682|gb|ADL59529.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 114
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSDSELVNQIIEKLIEKDKVYLSWVPAHK 100
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 101 GIGGNEQVDKL 111
>gi|289469804|gb|ADC96557.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187919|gb|ADC42446.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187743|gb|ADC42362.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011510|gb|ACU55611.1| pol protein [Human immunodeficiency virus 1]
Length = 1016
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 609 YVDGAASRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 664 VTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 710
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 711 GGNEQVDKLVSTGIR 725
>gi|256011020|gb|ACU55366.1| pol protein [Human immunodeficiency virus 1]
Length = 931
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIXKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|255984734|gb|ACU46439.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|255984012|gb|ACU46078.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|194500416|gb|ACF75457.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSEAEVVNQIIEKLIEKE-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|158931141|sp|P19505|POL_SIVSP RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1449
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 1037 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 1093
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1094 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 1138
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1139 GGNQEVDHLVSQGIRQ 1154
>gi|114801389|gb|ABI79975.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114801370|gb|ABI79958.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114801471|gb|ABI80048.1| pol protein [Human immunodeficiency virus 1]
gi|114801510|gb|ABI80079.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|93210784|gb|ABF00750.1| pol protein [Human immunodeficiency virus 1]
gi|212382851|gb|ACJ25729.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAANRETKLGKAGYVTDRGRQKLVNLTETTNQKAELQAIQLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 693 GGNEQVDKLVSKGVR 707
>gi|38491734|gb|AAR22118.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+++ E T N+ + AI +V
Sbjct: 595 YVDGAANKETKVGRAGY---VTDKGRQKVVTLNE---TTNQKTELEAIHLALQDSGL-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|37221197|gb|AAQ89730.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDXGRQKVVSLXDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|62997618|gb|AAY24672.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|325638231|gb|ADZ35671.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325638180|gb|ADZ35629.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325638144|gb|ADZ35599.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|325638139|gb|ADZ35595.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|312601846|gb|ADQ92481.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|312214057|emb|CBX94059.1| hypothetical protein [Leptosphaeria maculans]
Length = 125
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI-KG 127
++ TDS YV KG ++W+ KW+ N W TS+ N+DL++ + K + I
Sbjct: 40 WIIATDSEYVVKGMTEWLPKWESNNWPTSNGTKPANLDLFLALDDLVTTQKANNLTIGFW 99
Query: 128 HAGNQENEKVDRIARNAA 145
H + N+ DR+A+ AA
Sbjct: 100 HIPREHNKLADRLAKAAA 117
>gi|306478199|gb|ADM89474.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDKGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|306478155|gb|ADM89452.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVVS---LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGVIHAQPDKSESELVSEIIEQLIKKEKIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477573|gb|ADM89161.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|295883786|gb|ADG57023.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGASNRETKIGRAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 697 GGNEQIDKLVSAGIRK 712
>gi|288187931|gb|ADC42452.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011700|gb|ACU55706.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984934|gb|ACU46539.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|255984290|gb|ACU46217.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIELLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984252|gb|ACU46198.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVXTINDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELXNQIIEQLIKKXXVYLXWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|119507278|dbj|BAF42515.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNLIIEELIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|114801379|gb|ABI79966.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|18074000|emb|CAC86565.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRK 712
>gi|24181479|gb|AAN47101.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVNLTETTNQKTELQAIQLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|25166791|gb|AAN73583.1|AF484494_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1027 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1079
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1080 NIITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1126
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1127 GIGGNEQVDKLVSNGIRKI 1145
>gi|77416891|sp|P24740|POL_HV1U4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1428
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1021 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1073
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1074 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHK 1120
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1121 GIGGNEQVDKLVSSGIRK 1138
>gi|1827919|pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
gi|4139432|pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAA 145
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGI 556
>gi|640348|pdb|3HVT|A Chain A, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
Length = 556
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAA 145
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGI 556
>gi|328834294|gb|AEB52719.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDKGRQKVVSLNE---TTNQKTELHAIYLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 650 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIRK 714
>gi|306477851|gb|ADM89300.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLAVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|270161013|gb|ACZ63370.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|302869110|ref|YP_003837747.1| phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
gi|302571969|gb|ADL48171.1| Phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
Length = 377
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALKYP 66
DG GNPGP G+G ++R + S TNN E I L A
Sbjct: 2 VIEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAAAEL 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + S+ + + W+ V A V W+
Sbjct: 62 GAAEV------EARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAA--VRFTWVP 113
Query: 127 GHAGNQENEK 136
+ N
Sbjct: 114 ----RERNRH 119
>gi|255984294|gb|ACU46219.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANREXKLGXAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VB++
Sbjct: 143 GGNEQVBKLVSAGIRK 158
>gi|255984158|gb|ACU46151.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|226348556|gb|ACO50597.1| pol protein [Human immunodeficiency virus 1]
Length = 467
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 84 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 138
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 139 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 185
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 186 GGNEQVDKLVSAGIRK 201
>gi|226348554|gb|ACO50596.1| pol protein [Human immunodeficiency virus 1]
Length = 478
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 96 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 150
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 151 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 197
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 198 GGNEQVDKLVSAGIRK 213
>gi|170676526|gb|ACB30411.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + K ++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNKRRQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|164415879|gb|AAU14949.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|114801448|gb|ABI80028.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37221518|gb|AAQ89887.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGKEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221516|gb|AAQ89886.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGKEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|4205028|gb|AAD10904.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|15788239|gb|AAL07692.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSIDDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|8885978|gb|AAF80325.1|AF156847_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 996
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 609 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 663
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 664 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 710
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 711 GGNEQVDKLVSAGIR 725
>gi|325638226|gb|ADZ35667.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|306477517|gb|ADM89133.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289469872|gb|ADC96591.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187955|gb|ADC42464.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187807|gb|ADC42392.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|255984802|gb|ACU46473.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKAISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984530|gb|ACU46337.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRXSKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGVEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSESELVSKIIEQLIKKE-------------KVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 143 GGNEKVDKLVSXGIRK 158
>gi|226348534|gb|ACO50586.1| pol protein [Human immunodeficiency virus 1]
Length = 464
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 81 YVDGAANRETKSGKAGYVTNKGRQKIISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 135
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 136 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 182
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 183 GGNEQVDKLVSAGIRK 198
>gi|164415872|gb|AAU14940.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 592 YVDGAANRENKLGKAGYVTDRGKQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|134254989|gb|ABO65217.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG S G G + ++ + + A++ +V +
Sbjct: 596 YVDGXASRETKRGKAGYVTNRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEELIKKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|82571350|gb|ABB84113.1| pol protein [Human immunodeficiency virus 1]
gi|212382849|gb|ACJ25728.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G+++++S E TTN + EL A L +V
Sbjct: 599 YVDGAANRETKLGRAGY---VTDRGRQRVVSLTE--TTNQKTELHAV--QLALQDSGSEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|319444174|gb|ADV58187.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIXK 716
>gi|306477963|gb|ADM89356.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSGVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|270161021|gb|ACZ63377.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|270160997|gb|ACZ63356.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256011226|gb|ACU55469.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 708 GGNEQVDKLVSAGIR 722
>gi|255984336|gb|ACU46240.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIR 157
>gi|255983930|gb|ACU46037.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETXLGKAGY---VTDRGRQKVVSITD---TTNQKTELQAIHLALQDSGX-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYAJGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSXGIRK 657
>gi|62822739|gb|AAY15133.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 520
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 408 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 462
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + + W+ H G
Sbjct: 463 IVDSQYVMGIVASQPTESE-------------SKIVNQIIEEMTKKEAIYVAWVPAHKGI 509
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 510 GGNQEVDHL 518
>gi|45361199|gb|AAS59390.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYPAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|4205037|gb|AAD10912.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|4205001|gb|AAD10880.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGTAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|25166701|gb|AAN73502.1|AF484485_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGASNRETKLGKAGYVTDRGRQKVVTITDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKKKVYLSWVPTHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRKI 1144
>gi|74273432|gb|ABA01417.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|61102610|gb|AAX37746.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|60651997|gb|AAX33075.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ G T N+ + AI +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQK----GVSLTDTTNQKTELQAIHLALQDSGL-EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|328834376|gb|AEB52792.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQRVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|306478175|gb|ADM89462.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQGIPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011576|gb|ACU55644.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010883|gb|ACU55298.1| pol protein [Human immunodeficiency virus 1]
Length = 873
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ +G++K++S + ++ + +V
Sbjct: 597 YVDGAABXETKLGKAGY---XTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 650 NIVTDSQYALGIJ-------------QAQPDKSESELVNQIIEQLIXKEKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIRKI 715
>gi|256010827|gb|ACU55270.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKAIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSAGIRK 719
>gi|256010707|gb|ACU55210.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A+ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGRQKVVSLXDTTNQKTELQAIXLALL-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLXWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|238633943|gb|ACR51881.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|222428444|gb|ACM50085.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGASNRETKLGKAGYVTDRGRRKVVSFADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 655 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 702 GGNEQVDKL 710
>gi|222428246|gb|ACM49927.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 702 GIGGNEKVDKLVSSGIRK 719
>gi|134284806|gb|ABO69495.1| pol [Feline immunodeficiency virus]
Length = 1153
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG GW + E E +N E A AL + ++
Sbjct: 615 YIDGGRKKEQKARAGW------WKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNII 668
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS Y++ + + E + K+ L W+ GH G
Sbjct: 669 --TDSQYIYNMV--------------KARPEPSDPLWKEIIEELQKKEKIFLNWVPGHRG 712
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 713 IPGNKEIDEL 722
>gi|108860426|dbj|BAE95945.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|32261485|gb|AAP76547.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1428
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI+ +V
Sbjct: 1021 YVDGAANRETKLGRAGY---VTDRGRQKIVSLTE---TTNQKTELHAIQLALQDSG-SEV 1073
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1074 NIVTDSQYA-------------LGIIQAQPDNSESEIVNQIIEQLINKEKVYLSWVPAHK 1120
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1121 GIGGNEQVDKLVSSGIRK 1138
>gi|14030508|gb|AAK52927.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSTGIRK 545
>gi|74273392|gb|ABA01381.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSTGIRK 718
>gi|325635862|gb|ADZ33662.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVHLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|295883818|gb|ADG57052.1| pol protein [Human immunodeficiency virus 1]
Length = 1017
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 610 YVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 664
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 665 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 712 GGNEKVDKLVSTGIRK 727
>gi|270161029|gb|ACZ63384.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L WI H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWIPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|270161005|gb|ACZ63363.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|288188458|gb|ADC42703.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187848|gb|ADC42411.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIKLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|283362101|dbj|BAI65905.1| polyprotein [Human immunodeficiency virus 1]
Length = 534
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 409 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 463
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 464 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 510
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 511 GGNEQVDKLVSNGIR 525
>gi|256011592|gb|ACU55652.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLXVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|256010877|gb|ACU55295.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDKGRQKVVS--LADTTNQKTELQAIHLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|255984908|gb|ACU46526.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVXSLXDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|226348644|gb|ACO50641.1| pol protein [Human immunodeficiency virus 1]
Length = 744
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 369 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGVEVNI 423
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 424 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 470
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 471 GGNEQVDKLVSAGIRK 486
>gi|226348538|gb|ACO50588.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G S ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQSQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSTGIRK 491
>gi|194399959|gb|ACF60928.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
NEKVD++ +
Sbjct: 697 GGNEKVDKLVSSGIRRI 713
>gi|90968071|emb|CAJ57812.1| pol protein [Simian immunodeficiency virus]
Length = 1019
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 46/137 (33%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + K G TTN + EL A + AL KV +
Sbjct: 604 YVDGAAHRESKEGKAGYVTTSG---KEHVVGLSNTTNQKAELEAVLLALKHSGP--KVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV+ + N + + + V L W+ H G
Sbjct: 659 VTDSQYVYGILVG-------------NPTETDNKIVEDIIQQLLGKEAVYLTWLPAHKGI 705
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 706 GGNEQVDKLVSQGIRRI 722
>gi|37221448|gb|AAQ89853.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVPLTDTTNQKAELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|13095152|gb|AAK12158.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIR 559
>gi|4205064|gb|AAD10936.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|325635924|gb|ADZ33716.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVHLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306477821|gb|ADM89285.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|306477555|gb|ADM89152.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVP---LADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VIDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187649|gb|ADC42316.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 642 GGNEQIDKLVSNGIRK 657
>gi|283362103|dbj|BAI65906.1| polyprotein [Human immunodeficiency virus 1]
Length = 535
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 409 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 463
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 464 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 510
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 511 GGNEQVDKLVSNGIR 525
>gi|256011642|gb|ACU55677.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLXKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSXGIRK 712
>gi|256011256|gb|ACU55484.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVRK 716
>gi|256011070|gb|ACU55391.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETXLGKAGYVTDRGRQKVVTLNDTTNQKTELQAINLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984926|gb|ACU46535.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETXLGKAGYVTNKGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|157005084|gb|ABV00784.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|156254359|gb|ABU62669.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 56 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKERVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 103 GGNEQVDKLVSTGIRKI 119
>gi|54124750|gb|AAV30091.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 657 VTDSQYALGIIQXQPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIR 718
>gi|37221342|gb|AAQ89800.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANKETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|150015529|ref|YP_001307783.1| hypothetical protein Cbei_0640 [Clostridium beijerinckii NCIMB
8052]
gi|149901994|gb|ABR32827.1| hypothetical protein Cbei_0640 [Clostridium beijerinckii NCIMB
8052]
Length = 316
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
D + ++ +HAY DG+ + + G +GV+ + I G ++ ++++ A +
Sbjct: 67 DESYPKDCLHAYVDGSYNSSDGRYSYGVVCVNDDVVEYIESGAEKDSSSKNIRQIAGELK 126
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
A++ L + V + I W+ ++ +++ + + + ++
Sbjct: 127 GAVRAVEYALEHGQKKVVLFHDYEGIAHHATGAWERKEESSMQYYKKMQELINSGM--EI 184
Query: 121 DLYWIKGHAGNQENEKVDR 139
+ H G+ NE VD
Sbjct: 185 IFVKVDSHTGDLFNELVDE 203
>gi|326370696|gb|ADZ56471.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++ N
Sbjct: 700 GGNEQIDKLVSNGIRKI 716
>gi|288188182|gb|ADC42576.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187785|gb|ADC42381.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187763|gb|ADC42372.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187696|gb|ADC42339.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011428|gb|ACU55570.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETXLGKAGY---VTDRGRQKVVSITD---TTNQKTELQAIYLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|256011330|gb|ACU55521.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDRGRQKVVS---LNDTTNQKTELQAIHLALQDSGV-EV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEXLIXKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSAGIRK 719
>gi|256010939|gb|ACU55326.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDTTNQQTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSXLEVNIVTDSQYALGIIQAQPDKSESALVSQIIEQLINKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|255984186|gb|ACU46165.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGXAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|226348726|gb|ACO50682.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKSGKAGYITDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|226348542|gb|ACO50590.1| pol protein [Human immunodeficiency virus 1]
Length = 465
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 83 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 137
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 138 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 184
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 185 GGNEQVDKLVSAGIRK 200
>gi|222428539|gb|ACM50161.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+IS + ++ + +V
Sbjct: 603 YVDGAANRETKLGKAGY---ITDKGRQKVISLTDTTNQKTELQAIQL----ALQDSGLEV 655
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 656 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 702
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 703 GIGGNEQIDKLVSSGIRK 720
>gi|170676533|gb|ACB30414.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 441 YVDGAADRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|148745853|emb|CAK49315.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTELHAINL----ALQDSGPEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + +V L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKE-------------RVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|112497942|gb|ABI20339.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ I + A+ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLAL-----XDSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|42592292|emb|CAF29007.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 568
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 425 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 479
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 480 VTDSQYA-------------LGIIQAQPNKSESEIVSQIIEQLINKERVYLAWVPAHKGI 526
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 527 GGNEQVDKLVSAGIRK 542
>gi|37221352|gb|AAQ89805.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|74273402|gb|ABA01390.1| pol protein [Human immunodeficiency virus 1]
gi|74273412|gb|ABA01399.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|61102521|gb|AAX37669.1| pol protein [Human immunodeficiency virus 1]
gi|61102553|gb|AAX37697.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|16118385|gb|AAL12749.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIELLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRKI 714
>gi|328834366|gb|AEB52783.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++ E T N+ + AI +V +
Sbjct: 596 YVDGAANRET-KMGKAGYVTDRGRQKVVPLTE---TTNQKTELHAIHLALQDSG-SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDSSESEVVNRIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|328834348|gb|AEB52767.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDTTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGILQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|325636033|gb|ADZ33811.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVHLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325635808|gb|ADZ33615.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVHLTDTTNQKTELQAINLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478095|gb|ADM89422.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011722|gb|ACU55717.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE VD++
Sbjct: 697 GGNEXVDKLVSAGIR 711
>gi|255984848|gb|ACU46496.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984546|gb|ACU46345.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|238733933|gb|ACR55197.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 656 VTDSQYALGIIQAQPDRSESEIVNRIIEKLIEKE-------------RVYLSWVPAHKGI 702
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 703 GGNEQVDKL 711
>gi|226348552|gb|ACO50595.1| pol protein [Human immunodeficiency virus 1]
Length = 478
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 92 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 146
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 147 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 193
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 194 GGNEQVDKLVSAGIRK 209
>gi|170778899|gb|ACB36849.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTNRGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|114801292|gb|ABI79888.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|42592276|emb|CAF28999.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 548
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 420 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 474
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 475 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 521
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 522 GGNEQVDKLVSAGIR 536
>gi|14486434|gb|AAK61540.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|14486438|gb|AAK61542.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|14486440|gb|AAK61543.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|13095229|gb|AAK12192.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDQSGSELVSQIIEQLIKKEEVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|14486444|gb|AAK61545.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|14486446|gb|AAK61546.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|14030520|gb|AAK52933.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSTGIRK 545
>gi|14486450|gb|AAK61548.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|7144656|gb|AAF37324.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|7144658|gb|AAF37325.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 431 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELKAIHLALQ-----DSGLEVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHTGI 532
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 533 GGNEQVDKLVSAGIR 547
>gi|7144666|gb|AAF37329.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 431 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 483
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 484 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEKLINKERVYLAWVPAHK 530
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 531 GIGGNEQVDKLVSTGIRK 548
>gi|25166841|gb|AAN73628.1|AF484499_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1431
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S + ++ + +V
Sbjct: 1024 YVDGAASRETKLGRAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1076
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1077 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLSWVPAHK 1123
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE++D++ N
Sbjct: 1124 GIGGNEQIDKLVSNGIRKI 1142
>gi|5081473|gb|AAD39399.1|AF128997_1 polymerase [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLEKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|61102684|gb|AAX37810.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESGLVTQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRKI 138
>gi|31980407|dbj|BAC77729.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S E T N+ + AI +V +
Sbjct: 596 YVDGAANRET-KLGMAGYVTDRGRQKVVSLNE---TTNQKTELHAIYLALQDSG-SEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|328834020|gb|AEB52476.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|327458283|gb|AEA76581.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKEGKAGYVTDRGRQKIXSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSESELVC-------------QIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 543 GGNEQIDKLVSKGIR 557
>gi|326370733|gb|ADZ56503.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVCQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478177|gb|ADM89463.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQGIPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478081|gb|ADM89415.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477559|gb|ADM89154.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKAELQAVHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VIDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477461|gb|ADM89105.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|288187892|gb|ADC42433.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187618|gb|ADC42302.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011508|gb|ACU55610.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + +TTN + EL A AL + +V
Sbjct: 599 YVDGAANRETKLGKAGY-----XTDXGRQKAIXLTDTTNQKTELQAIYLALQDSEL--EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEELIKKEXVYLAWVPAHX 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSAGIRK 716
>gi|255984322|gb|ACU46233.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|222428454|gb|ACM50093.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|222428266|gb|ACM49943.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A + AL +V +
Sbjct: 596 YVDGAANRETKLGKAGYV---TDKGRQKAVPLIDTTNQKTELHAILLALQDSGL--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|49574245|gb|AAT66795.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|328834237|gb|AEB52669.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|328834102|gb|AEB52549.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGVRK 713
>gi|306477853|gb|ADM89301.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLAVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 543 GGNEKVDKLVSAGIR 557
>gi|301503555|gb|ADK75281.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVIPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|289187219|gb|ADC92189.1| pol protein [Human immunodeficiency virus 1]
gi|289187221|gb|ADC92190.1| pol protein [Human immunodeficiency virus 1]
gi|289187384|gb|ADC92270.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|260533705|gb|ACX45107.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSE-------------SGIVNEIIEKLIEKDKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIRK 710
>gi|256011394|gb|ACU55553.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSASEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|256011122|gb|ACU55417.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTNKGRQKVVSLTDTTNQKTELQAIXL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256010843|gb|ACU55278.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVXLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV + W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|255984842|gb|ACU46493.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|170778859|gb|ACB36829.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAHPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|14030518|gb|AAK52932.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANKESKSGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSAGIRK 545
>gi|1289520|gb|AAC55950.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVGAGIRK 558
>gi|74273442|gb|ABA01426.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325635916|gb|ADZ33709.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601917|gb|ADQ92515.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306477819|gb|ADM89284.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRVGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKGRVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|306477587|gb|ADM89168.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVGQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256011438|gb|ACU55575.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 597 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIR 713
>gi|255984810|gb|ACU46477.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|255984642|gb|ACU46393.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSLTNTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 143 GGNDQVDKLVSAGIRK 158
>gi|226348724|gb|ACO50681.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I + A++ +V +
Sbjct: 374 YVDGAANRDTKLGKAGYVTDRGRQKVISLPDTTNQKTELQAIYLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIR 490
>gi|226348574|gb|ACO50606.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLTNTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 476 GGNEQVDKLVSSGIRK 491
>gi|170778897|gb|ACB36848.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|157274003|gb|ABV28275.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|13095161|gb|AAK12162.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANREAKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G ENE+VD++
Sbjct: 543 GIGENEQVDKLVSAGIRK 560
>gi|2286126|gb|AAB64273.1| pol polyprotein [Human immunodeficiency virus 1]
gi|2286135|gb|AAB64281.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|24753951|gb|AAN64078.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|327458207|gb|AEA76543.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIR 557
>gi|326416656|gb|ADZ73181.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K +K +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIKKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|321461852|gb|EFX72880.1| hypothetical protein DAPPUDRAFT_325810 [Daphnia pulex]
Length = 268
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---SGGEKETTNNRMELMAAIKALTALK 64
+ AYTDG+ S + + + KE G T A
Sbjct: 93 SIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 152
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
P + ++Y+DSS S + + S+ + L W
Sbjct: 153 CPPEAIIYSDSSSAITAISSNSL----------SENEAITAIREIIASLKSSGTRTRLTW 202
Query: 125 IKGHAGNQENEKVDRIA 141
I H G + NE+ DR+A
Sbjct: 203 IPSHTGIEGNERTDRLA 219
>gi|306478185|gb|ADM89467.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477569|gb|ADM89159.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVS---LADTTNQKAELQAVHLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYV-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|270160989|gb|ACZ63349.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256010986|gb|ACU55349.1| pol protein [Human immunodeficiency virus 1]
Length = 929
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 522 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIXLALQ-----DSGSEVNI 576
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + +V L W+ H G
Sbjct: 577 VTDSQYALGII--------------QAQPDKSESEJVSQIIEQLINKERVYLTWVPAHKG 622
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 623 IGGNEQVDKLVSTGIRK 639
>gi|255984138|gb|ACU46141.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---ITNKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 640 GIGGNEQIDKLVSAGIRK 657
>gi|255983990|gb|ACU46067.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQQTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|238634025|gb|ACR51947.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|222428389|gb|ACM50041.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTSKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSTGIRK 715
>gi|212382782|gb|ACJ25699.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 592 YVDGAANRETKMGKAGDVTDRGRQKVVPLSETTNQKTELQAIQLALQ-----DSGSKVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRRERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIRK 709
>gi|148745857|emb|CAK49317.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ I ETTN + EL A AL +
Sbjct: 595 YVDGAANRDTKLGKAGYVTDRGKQKIIT---LTETTNQKAELQAIQLALQDSGLEANI-- 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|114801409|gb|ABI79993.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|37221485|gb|AAQ89871.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|37221487|gb|AAQ89872.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|312601856|gb|ADQ92485.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|306478123|gb|ADM89436.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478013|gb|ADM89381.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRESKLGKAGYV---TNKGRQKAVSLTDTTNQQTELQAILLALQDSGV--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477885|gb|ADM89317.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIHAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|304347451|gb|ADM25288.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + + + V L W+ H G
Sbjct: 496 VTDSQYV-------------LGIIQAQPDKSESELVNQIIEQLIKKEXVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIRK 558
>gi|289469772|gb|ADC96541.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289187331|gb|ADC92244.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 595 VTDSQYALGII--------------QAQPDXSESEJVSQIIEQLIKKEKVYLAWVPAHKG 640
Query: 131 NQENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 641 IGGNEQIDKLVSSGIRK 657
>gi|256011384|gb|ACU55548.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ KG++K+JS T N+ + AI +V
Sbjct: 596 YVDGAANRETKJGKAGY---XTNKGRQKVJS---LXXTTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256011158|gb|ACU55435.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAXPDKSESELVNQIIEQLIKKEXVYLXWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|256010819|gb|ACU55266.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|238634109|gb|ACR52016.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|238633924|gb|ACR51866.1| pol protein [Human immunodeficiency virus 1]
gi|238633926|gb|ACR51867.1| pol protein [Human immunodeficiency virus 1]
gi|238633945|gb|ACR51882.1| pol protein [Human immunodeficiency virus 1]
gi|238634019|gb|ACR51944.1| pol protein [Human immunodeficiency virus 1]
gi|238634021|gb|ACR51945.1| pol protein [Human immunodeficiency virus 1]
gi|238634027|gb|ACR51948.1| pol protein [Human immunodeficiency virus 1]
gi|238634029|gb|ACR51949.1| pol protein [Human immunodeficiency virus 1]
gi|238634031|gb|ACR51950.1| pol protein [Human immunodeficiency virus 1]
gi|238634033|gb|ACR51951.1| pol protein [Human immunodeficiency virus 1]
gi|238634115|gb|ACR52019.1| pol protein [Human immunodeficiency virus 1]
gi|238634117|gb|ACR52020.1| pol protein [Human immunodeficiency virus 1]
gi|238634119|gb|ACR52021.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|226348632|gb|ACO50635.1| pol protein [Human immunodeficiency virus 1]
Length = 740
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|194270588|gb|ACF36840.1| pol polyprotein [Human immunodeficiency virus 1]
gi|194270590|gb|ACF36841.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|170778921|gb|ACB36860.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 543 GGNKQVDKLVSAGIRK 558
>gi|156254369|gb|ABU62674.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVHLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 103 GGNEQIDKLVSTGIRK 118
>gi|156254357|gb|ABU62668.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1 YVDGAANRETKLGRAGYVTNKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 55
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 56 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 102
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 103 GGNEQVDKLVSAGIRK 118
>gi|90960711|dbj|BAE92739.1| Pol [Human immunodeficiency virus 1]
gi|114431186|dbj|BAF31433.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|62822741|gb|AAY15134.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 530
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 419 YTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSGP--KVNI 473
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + + W+ H G
Sbjct: 474 IVDSQYVMGIVASQPTESE-------------SKIVNQIIEEMTKKEAIYVAWVPAHKGI 520
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 521 GGNQEVDHL 529
>gi|25166721|gb|AAN73520.1|AF484487_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRRI 1144
>gi|61102669|gb|AAX37797.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 20 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 74
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 75 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 121
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 122 GGNEQVDKLVSSGIRK 137
>gi|326416664|gb|ADZ73185.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESDLVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|325638286|gb|ADZ35718.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|312602008|gb|ADQ92559.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|306478195|gb|ADM89472.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306478021|gb|ADM89385.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|256011378|gb|ACU55545.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLANTTNQQTELQAIHLALQ-----DSRSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 699 GGNEQVDKL 707
>gi|238634113|gb|ACR52018.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|224093782|ref|XP_002309989.1| predicted protein [Populus trichocarpa]
gi|222852892|gb|EEE90439.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 19/139 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAI--KALTAL 63
+ DG GNPG G G ++R I + ++ EL A L
Sbjct: 83 RIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWD 142
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ KV L +DS V + + +N K + D +
Sbjct: 143 RGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKGMLGRDWEVTTY----------- 191
Query: 124 WIKGHAGNQENEKVDRIAR 142
H + N D +A
Sbjct: 192 ----HVYREANCVADWLAN 206
>gi|195409334|gb|ACF95913.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRESKQGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 695 GIGGNEQIDKLVSSGIRK 712
>gi|13095223|gb|AAK12189.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSITGTTNLKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|25167011|gb|AAN73781.1|AF484516_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRXTKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSELEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|25166911|gb|AAN73691.1|AF484506_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKLGKAGYVTDRGRQKVVSLIDTTNQKTELQAINLALQ-----DSGVEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRK 1143
>gi|31559652|dbj|BAC77477.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1027 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1082 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1128
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 1129 GGNEQIDKLVSAGIRK 1144
>gi|325638302|gb|ADZ35732.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|306478287|gb|ADM89518.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|255984880|gb|ACU46512.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSITDTTNQKTELHAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984120|gb|ACU46132.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKXVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGXIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|238734106|gb|ACR55350.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESDLVNQIIEMLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVRKI 714
>gi|116518662|gb|ABJ99548.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETRLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 702 GGNEQIDKLVSAGIRK 717
>gi|114801262|gb|ABI79861.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|37221510|gb|AAQ89883.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNX 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221452|gb|AAQ89855.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKAELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|25166901|gb|AAN73682.1|AF484505_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1126 GIGGNEQVDKLVSNGIRKI 1144
>gi|25166861|gb|AAN73646.1|AF484501_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1426
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1019 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 1071
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 1072 NIVTDSQYALGIIQAQPDRSESELVTLIIEKLIGKD-------------KVYLSWVPAHK 1118
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 1119 GIGGNEQVDKLVSSGIRKI 1137
>gi|325638730|gb|ADZ36095.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETRLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W++ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVQAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRKI 718
>gi|325635932|gb|ADZ33723.1| pol protein [Human immunodeficiency virus 1]
gi|325635955|gb|ADZ33743.1| pol protein [Human immunodeficiency virus 1]
gi|325635971|gb|ADZ33757.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325635893|gb|ADZ33689.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601933|gb|ADQ92523.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|289187360|gb|ADC92258.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187356|gb|ADC92256.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187343|gb|ADC92250.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188466|gb|ADC42707.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNTGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188454|gb|ADC42702.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187880|gb|ADC42427.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187864|gb|ADC42419.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187809|gb|ADC42393.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187745|gb|ADC42363.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187741|gb|ADC42361.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187668|gb|ADC42325.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187658|gb|ADC42320.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187627|gb|ADC42306.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|260533675|gb|ACX45080.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 593 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 632
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + KV L W+ H
Sbjct: 633 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSEAEIVSQIIEKLIDKDKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIR 709
>gi|256011550|gb|ACU55631.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|255984830|gb|ACU46487.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETXLGKAGY---VTNRGRQKVVSLTD---TTNQQTELQAIHLALQDSGX-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSTGIRK 158
>gi|167833268|gb|ACA02283.1| pol protein [Human immunodeficiency virus 1]
Length = 707
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|156542149|ref|XP_001601982.1| PREDICTED: similar to GA16357-PA, partial [Nasonia vitripennis]
Length = 826
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+F+ + ++ + YWI H G ENE ++A+ AA
Sbjct: 599 KKHNEFISKNPENDIKYYWIPAHVGILENEMAYQLAKEAAE 639
>gi|156254387|gb|ABU62683.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGRAGY---VTDRGRQKVVSITD---TTNQKTELQAIHLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 54 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPSHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++
Sbjct: 101 GIGGNEKVDKLVSTGIRK 118
>gi|114801311|gb|ABI79905.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + G++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGGQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|14486432|gb|AAK61539.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 566
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLXDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEXLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|1123014|gb|AAC54643.1| pol [Human immunodeficiency virus 1]
Length = 902
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 495 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNDTTNQKTELQAINL----ALQDSGLEV 547
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 548 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 594
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 595 GIGGNEQVDKLVSAGIRK 612
>gi|25166711|gb|AAN73511.1|AF484486_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1438
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1031 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1083
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 1084 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLSWVPAHK 1130
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 1131 GIGGNEQVDKLVSNGIRKI 1149
>gi|5305479|gb|AAD41667.1|AF075702_2 pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|61102642|gb|AAX37774.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 20 YVDGAANRETKLGRAGY---VTDRGRQKVVSLADTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 73 NIVTDSQYA-------------LGIIQAQPDKSESELVGQIIEELIKKEKVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRKI 138
>gi|71021213|ref|XP_760837.1| hypothetical protein UM04690.1 [Ustilago maydis 521]
gi|46100211|gb|EAK85444.1| hypothetical protein UM04690.1 [Ustilago maydis 521]
Length = 128
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
++ + WI GH NE+ D +A++AA
Sbjct: 63 RRITVVWISGHRDIPGNERADTLAQSAADDAIR 95
>gi|328834029|gb|AEB52484.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRESKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|326416780|gb|ADZ73243.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416776|gb|ADZ73241.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416770|gb|ADZ73238.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416758|gb|ADZ73232.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416754|gb|ADZ73230.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416752|gb|ADZ73229.1| pol protein [Human immunodeficiency virus 1]
gi|326416756|gb|ADZ73231.1| pol protein [Human immunodeficiency virus 1]
gi|326416760|gb|ADZ73233.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416746|gb|ADZ73226.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416744|gb|ADZ73225.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416742|gb|ADZ73224.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416734|gb|ADZ73220.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416732|gb|ADZ73219.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416728|gb|ADZ73217.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416726|gb|ADZ73216.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416720|gb|ADZ73213.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416718|gb|ADZ73212.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416714|gb|ADZ73210.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416712|gb|ADZ73209.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416706|gb|ADZ73206.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416702|gb|ADZ73204.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416700|gb|ADZ73203.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416698|gb|ADZ73202.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416692|gb|ADZ73199.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416690|gb|ADZ73198.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416686|gb|ADZ73196.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416684|gb|ADZ73195.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416670|gb|ADZ73188.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416668|gb|ADZ73187.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416662|gb|ADZ73184.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416660|gb|ADZ73183.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416658|gb|ADZ73182.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416654|gb|ADZ73180.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416650|gb|ADZ73178.1| pol protein [Human immunodeficiency virus 1]
gi|326416666|gb|ADZ73186.1| pol protein [Human immunodeficiency virus 1]
gi|326416672|gb|ADZ73189.1| pol protein [Human immunodeficiency virus 1]
gi|326416676|gb|ADZ73191.1| pol protein [Human immunodeficiency virus 1]
gi|326416680|gb|ADZ73193.1| pol protein [Human immunodeficiency virus 1]
gi|326416682|gb|ADZ73194.1| pol protein [Human immunodeficiency virus 1]
gi|326416688|gb|ADZ73197.1| pol protein [Human immunodeficiency virus 1]
gi|326416694|gb|ADZ73200.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416648|gb|ADZ73177.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416646|gb|ADZ73176.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416644|gb|ADZ73175.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416642|gb|ADZ73174.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416640|gb|ADZ73173.1| pol protein [Human immunodeficiency virus 1]
gi|326416678|gb|ADZ73192.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416636|gb|ADZ73171.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416632|gb|ADZ73169.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306478113|gb|ADM89431.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++KI+S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDKGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAIPDKSESELVSLIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|288187706|gb|ADC42344.1| pol protein [Human immunodeficiency virus 1]
Length = 572
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|256011670|gb|ACU55691.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDSSE-------------SEVVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010891|gb|ACU55302.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEXNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIRK 716
>gi|38491628|gb|AAR22024.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIHLALQDSG-TEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIR 711
>gi|37221264|gb|AAQ89763.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221532|gb|AAQ89894.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---ITNKGRQKVVSLTD---TTNQKAELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 640 GIGGNEQVDKL 650
>gi|7452910|emb|CAB86375.1| POL protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKD-------------KVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 693 GIGGNEQVDKLVSNGIRK 710
>gi|61102561|gb|AAX37704.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 16/133 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
YTDG+ G + ++ I G + AI
Sbjct: 965 IYTDGSKV----TGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFASKNAGK 1020
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ + + T + + + +S K+ L W+ H G
Sbjct: 1021 SV--------ICTDSLSSLSAIRNWNHNDPTTQEVR----HILSSHPKKITLLWVPSHQG 1068
Query: 131 NQENEKVDRIARN 143
NE D+ A+
Sbjct: 1069 IHGNELADKAAQE 1081
>gi|326370864|gb|ADZ56617.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638115|gb|ADZ35574.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|325638107|gb|ADZ35567.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|325638083|gb|ADZ35546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|325637808|gb|ADZ35313.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|325637776|gb|ADZ35285.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|325637760|gb|ADZ35271.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|306478111|gb|ADM89430.1| pol protein [Human immunodeficiency virus 1]
gi|306478133|gb|ADM89441.1| pol protein [Human immunodeficiency virus 1]
gi|306478189|gb|ADM89469.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187276|gb|ADC92217.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011692|gb|ACU55702.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRXRQKVVPLTDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEELIRKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256010731|gb|ACU55222.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTDKGRQKVITLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIR 712
>gi|222428316|gb|ACM49983.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|90903162|gb|ABE02173.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + KV
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTETTNQKTKLHAINL----ALQDSGSKV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESKLVNQIIKKLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 696 GIGGNEQVDKL 706
>gi|37221481|gb|AAQ89869.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANXETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAKPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 642 GGNEQVDXLVSAGIRK 657
>gi|18073999|emb|CAC86564.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1435
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 1028 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1081 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 1127
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1128 GIGGNEQVDKLVSNGIRK 1145
>gi|325636171|gb|ADZ33930.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|289187286|gb|ADC92222.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187554|gb|ADC42271.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|256011658|gb|ACU55685.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSDSEXVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSTGIRK 711
>gi|256011114|gb|ACU55413.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIR 712
>gi|255984610|gb|ACU46377.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|238633830|gb|ACR51792.1| pol protein [Human immunodeficiency virus 1]
gi|238633838|gb|ACR51799.1| pol protein [Human immunodeficiency virus 1]
gi|238633867|gb|ACR51824.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|222428564|gb|ACM50181.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|222428559|gb|ACM50177.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 699 GGNEQIDKLVSSGIRK 714
>gi|117910806|emb|CAL30194.1| pol protein [Simian immunodeficiency virus]
Length = 512
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + TTN + EL A + AL V +
Sbjct: 210 YVDGAANRESKQGKAGYVTDRGRQKI---RKLEGTTNQKAELEAVLLALEESGK--NVNI 264
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + E + + KV L W+ H G
Sbjct: 265 VTDSQYV-------------LGIIAASPDQSDSPLVQKIIEEMTTKEKVYLAWVPAHKGI 311
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 312 GGNEEIDKL 320
>gi|1123004|gb|AAC54634.1| pol [Human immunodeficiency virus 1]
Length = 902
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 495 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNDTTNQKTELQAINL----ALQDSGLEV 547
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 548 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 594
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 595 GIGGNEQVDKLVSAGIRK 612
>gi|327458193|gb|AEA76536.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANXETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQXIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|325638131|gb|ADZ35588.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|325637832|gb|ADZ35334.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|325637800|gb|ADZ35306.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|306478337|gb|ADM89543.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306478001|gb|ADM89375.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|289187337|gb|ADC92247.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187747|gb|ADC42364.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|256011542|gb|ACU55627.1| pol protein [Human immunodeficiency virus 1]
Length = 956
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 549 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 603
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 604 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKEKVYLAWVPAHKGI 650
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 651 GGNEQVDKLVSSGIRK 666
>gi|256010703|gb|ACU55208.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 603 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLKVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 705 GGNEQVDKLVSTGIR 719
>gi|238633845|gb|ACR51805.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|197257783|gb|ACH56098.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-TEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIR 711
>gi|154282427|ref|XP_001542009.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410189|gb|EDN05577.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 456
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 99 KKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KT KF + K GH G + NE+ DR+A+ A S
Sbjct: 235 DKTTFYHHPIHKFDFTTLDGKEKWTASPGHMGIEGNEEADRLAKRAVSS 283
>gi|334766|gb|AAB59770.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1022
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 610 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFSLALADSGPKANIIV 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 667 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 711
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 712 GGNQEVDHLVSQGIRQ 727
>gi|62997621|gb|AAY24674.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|325638099|gb|ADZ35560.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|325637792|gb|ADZ35299.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|325636138|gb|ADZ33902.1| pol protein [Human immunodeficiency virus 1]
gi|325636183|gb|ADZ33940.1| pol protein [Human immunodeficiency virus 1]
gi|325636202|gb|ADZ33956.1| pol protein [Human immunodeficiency virus 1]
gi|325636207|gb|ADZ33960.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601797|gb|ADQ92458.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478157|gb|ADM89453.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|296413118|ref|XP_002836263.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630076|emb|CAZ80454.1| unnamed protein product [Tuber melanosporum]
Length = 782
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 18/153 (11%)
Query: 6 LREVHAYTDGACSGNPG---PGGWGVLLRYKG------KEKIISGGEKETTNNRMELMAA 56
++V + DG+C + G+GV R + +E ++A
Sbjct: 276 PKQVLLFIDGSCISSGKLDSRPGYGVYFRREDNVYGRLEEYDGDDSASGVAEIWAAVIAL 335
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW----KTSDKKTVKNIDLWMKFV 112
+ KV+L D+ YV G + +KW GW K K L+ V
Sbjct: 336 QLRPWREEGFDKVVLACDAEYVVMGVCELAEKWAAKGWKAGGKPISGKDAWEKLLFELAV 395
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+ + +V + I + N D +AR A
Sbjct: 396 QEARGVRVQFWLIP----RKLN-LADPVARKGA 423
>gi|289469848|gb|ADC96579.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289187304|gb|ADC92231.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGGEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187779|gb|ADC42378.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|256011456|gb|ACU55584.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETKLGKAGYVTSRGRQKVVTLNDTTNQKTELQAINLALQ-----DSGLEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 695 GGNEQVDKLVSTGIRK 710
>gi|256011262|gb|ACU55487.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELPAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSXGIRK 716
>gi|255984818|gb|ACU46481.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|226348590|gb|ACO50614.1| pol protein [Human immunodeficiency virus 1]
Length = 748
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 369 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 423
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV + W+ H G
Sbjct: 424 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYMAWVPAHKGI 470
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 471 GGNEQVDKLVSNGIRK 486
>gi|222428499|gb|ACM50129.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANREIKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|37221506|gb|AAQ89881.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVXLTDTTNQKTELQAILLALQ-----DSGLEVNX 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221471|gb|AAQ89864.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|33359202|gb|AAQ17027.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|3002869|gb|AAD03225.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1436
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1029 YVDGAANKETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1084 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1131 GGNEQVDKLVSAGIRK 1146
>gi|328834624|gb|AEB53013.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGVRK 716
>gi|325638091|gb|ADZ35553.1| pol protein [Human immunodeficiency virus 1]
gi|325638123|gb|ADZ35581.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDKGRQKTVSLMD---TTNQKTELQAIHLALQDSGV-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|306477887|gb|ADM89318.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIHAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187846|gb|ADC42410.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|256010911|gb|ACU55312.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRESKLGRAGY--------------------VTDRGRQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGIXQAQPDKSESXIVSQIIEQLINKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256010861|gb|ACU55287.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTXLQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984884|gb|ACU46514.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984308|gb|ACU46226.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 ITDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLXWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|226348698|gb|ACO50668.1| pol protein [Human immunodeficiency virus 1]
Length = 683
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 335 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTSNQKTELQAIHLALQ-----DSGLEVNI 389
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 390 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 436
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 437 GGNEQVDKLVSAGIRK 452
>gi|222428355|gb|ACM50014.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 595 YVDGAANRETRLGKAGY---ITNKGRQKVVSLTD---TTNQKTELQAIHLALQDSEL-EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEELIKKEKVYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 695 GIGGNEQIDKLVSAGIRK 712
>gi|33390880|gb|AAQ17099.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSITE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDKSESELVNLIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGVRK 713
>gi|4205055|gb|AAD10928.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|25166991|gb|AAN73763.1|AF484514_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANKETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIRKI 1144
>gi|11066863|gb|AAG28736.1|AF287352_2 pol protein [synthetic construct]
gi|55775663|gb|AAV65100.1| HIV-1 YU-2 pol polyprotein [synthetic construct]
Length = 1001
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 696 GGNEQVDKLVSAGIRK 711
>gi|78172814|gb|ABB29349.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|62997624|gb|AAY24676.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|61102529|gb|AAX37676.1| pol protein [Human immunodeficiency virus 1]
gi|61102537|gb|AAX37683.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 73 NIITDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKKRVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 120 GIGGNEQVDKLVSNGIRK 137
>gi|56609272|gb|AAW03230.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKPELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNNIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
N++VD++ N
Sbjct: 698 GGNKQVDKLVSNGIR 712
>gi|326416764|gb|ADZ73235.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAVYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416708|gb|ADZ73207.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTETTNQQTELHAIYLALQDSGL--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|293573192|gb|ADE45276.1| pol protein [Human immunodeficiency virus 1]
gi|293573202|gb|ADE45285.1| pol protein [Human immunodeficiency virus 1]
gi|293573212|gb|ADE45294.1| pol protein [Human immunodeficiency virus 1]
gi|293573226|gb|ADE45307.1| pol protein [Human immunodeficiency virus 1]
gi|293573236|gb|ADE45316.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 598 YVDGAANRETKLGRAGY---VTDRGRQKVISLTD---TTNQKTELQAIHLALQDSG-SEV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + K+ L W+ H
Sbjct: 651 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIELLINKEKIYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSAGIRK 715
>gi|288187844|gb|ADC42409.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984062|gb|ACU46103.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTDRGRQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLXWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|255983994|gb|ACU46069.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAHPDKSESELVXQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|238634023|gb|ACR51946.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+ S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVASLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GIGGNEQVDKLVSSGIRK 716
>gi|238633662|gb|ACR51655.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTKQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|224108063|ref|XP_002314708.1| predicted protein [Populus trichocarpa]
gi|222863748|gb|EEF00879.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 19/139 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAI--KALTAL 63
+ DG GNPG G G ++R I + ++ EL A L
Sbjct: 83 RIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWD 142
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ KV L +DS V + + +N K + + +
Sbjct: 143 RGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKGMLGRNWEVTTY----------- 191
Query: 124 WIKGHAGNQENEKVDRIAR 142
H + N D +A
Sbjct: 192 ----HVYREANCVADWLAN 206
>gi|158380357|gb|ABW37394.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 698 GGNEKVDKLVSTGIRK 713
>gi|134252679|gb|ABO64929.1| pol protein [Human immunodeficiency virus 1]
Length = 712
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS ETTN + EL A AL +V
Sbjct: 601 YVDGAANRETKLGKAGY---VTDRGRQKVIS--LPETTNQKTELHAIYLALQDSG--SEV 653
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 654 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 700
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 701 GIGGNEQVDKL 711
>gi|114801439|gb|ABI80020.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETKLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|13095209|gb|AAK12183.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIELLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|28872819|ref|NP_057849.4| Gag-Pol [Human immunodeficiency virus 1]
gi|77416881|sp|P04585|POL_HV1H2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRK 1145
>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
Length = 891
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 97 SDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ I ++ ++ + W+ H G NEK D+ A A
Sbjct: 221 KNTSPRNEITSNIQACLVQSKKNIVFMWVPSHTGIIGNEKADKHAEQA 268
>gi|326416748|gb|ADZ73227.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|289469838|gb|ADC96574.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187870|gb|ADC42422.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187636|gb|ADC42310.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187574|gb|ADC42280.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTITDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|256011432|gb|ACU55572.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSELAVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011210|gb|ACU55461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEVVTQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010831|gb|ACU55272.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 647 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 694 GGNEQVDKLVSNGIR 708
>gi|255984384|gb|ACU46264.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRXGKAGYVTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKXI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984136|gb|ACU46140.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIR 656
>gi|194270580|gb|ACF36836.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|170778929|gb|ACB36864.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYITDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|170778885|gb|ACB36842.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITNRGRQKVVS--LTNTTNQKTELQAIHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIR 557
>gi|55275247|gb|AAV49460.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|885613|gb|AAC55686.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|325637840|gb|ADZ35341.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|306478059|gb|ADM89404.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|256011548|gb|ACU55630.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVTLXDTTNQKTELQAIYLALQ-----DSELEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSXGIR 711
>gi|256011474|gb|ACU55593.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984736|gb|ACU46440.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSTGIRK 158
>gi|226348626|gb|ACO50632.1| pol protein [Human immunodeficiency virus 1]
Length = 738
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S ++ + +V
Sbjct: 371 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTNTTNQQTELQAINL----ALQDSGLEV 423
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 424 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 470
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 471 GIGGNEQVDKLVSNGIRKI 489
>gi|148745879|emb|CAK49328.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R A T +
Sbjct: 595 YVDGAANRETKLGKAGY--------------------VTDRGRQKAVSLTETTNQKTELH 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 635 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSXGIRK 712
>gi|145606673|ref|XP_364540.2| hypothetical protein MGG_12018 [Magnaporthe oryzae 70-15]
gi|145014347|gb|EDJ98915.1| hypothetical protein MGG_12018 [Magnaporthe oryzae 70-15]
Length = 239
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 63 EVRVRWCPGHQGIPGNDRADELAKAG 88
>gi|114801419|gb|ABI80002.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 604 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + + +V L W+ H G
Sbjct: 659 VADSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIRK 721
>gi|114430813|dbj|BAF31613.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRKTKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|37221530|gb|AAQ89893.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---ITNKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLXKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 640 GIGGNEQVDKL 650
>gi|13095289|gb|AAK12214.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIR 559
>gi|3132812|gb|AAC29078.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRK 713
>gi|77416890|sp|P05959|POL_HV1RH RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1029 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1083
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1084 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1130
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 1131 GGNEQVDRLVSTGIRK 1146
>gi|325637816|gb|ADZ35320.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|312601951|gb|ADQ92532.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQNVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306478281|gb|ADM89515.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|306478159|gb|ADM89454.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|260179770|gb|ACX34551.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKGKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179766|gb|ACX34549.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011450|gb|ACU55581.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S T N+ + AI +V
Sbjct: 598 YVDGAANRETKLGKAGY---VTNKGRQKVVS---LNDTTNQQTELQAIYLALQDSGL-EV 650
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 651 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEELIKKEKVYLAWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 698 GIGGNEQVDKLVSAGVRK 715
>gi|256011156|gb|ACU55434.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|222428340|gb|ACM50002.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|222428325|gb|ACM49990.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDKGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|218753951|ref|ZP_03532747.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
GM 1503]
gi|289762391|ref|ZP_06521769.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289709897|gb|EFD73913.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
Length = 363
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 17/131 (12%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
GA NPGP G+G ++ TNN E I L
Sbjct: 10 GAS--NPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEA 67
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ Q +G + + + + + S +++ W+
Sbjct: 68 -------AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA-SQFRRINYEWVP----R 115
Query: 132 QENEKVDRIAR 142
N DR+A
Sbjct: 116 ARNTYADRLAN 126
>gi|63014621|gb|AAY25775.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+KI+S E TTN R EL A AL +V
Sbjct: 591 YVDGAANRETKLGKAGY---VTDRGKQKIVSLTE--TTNQRTELHAIYLALQDSGV--EV 643
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E +V L W+ H
Sbjct: 644 NIVTDSQYA--------LGIIQAQPDRSDSELVNQIIEKLIEKE-----RVYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 691 GIGGNEQIDKLVSSGIRK 708
>gi|38491490|gb|AAR21901.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNLIIEKLIGKDKVYLSWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 702 GIGGNEQVDKLVSSGIRK 719
>gi|38491703|gb|AAR22091.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|13095211|gb|AAK12184.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GVGGNEQVDKLVSAGIRK 560
>gi|8885980|gb|AAF80326.1|AF156848_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1021
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 614 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 668
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 669 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 715
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 716 GGNEQVDKLVSAGIR 730
>gi|306478235|gb|ADM89492.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 347 YVDGAANRETKLGKAGY---ITDKGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 399
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 400 NIVTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHK 446
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 447 GIGGNEQVDKLVSTGIRK 464
>gi|306478053|gb|ADM89401.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTSKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289469876|gb|ADC96593.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469850|gb|ADC96580.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|260533606|gb|ACX45018.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAQRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYAIGIIQAQPDRSESEVVNQIIEKLIGKD-------------KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|260179754|gb|ACX34543.1| pol protein [Human immunodeficiency virus 1]
gi|260179764|gb|ACX34548.1| pol protein [Human immunodeficiency virus 1]
gi|260179774|gb|ACX34553.1| pol protein [Human immunodeficiency virus 1]
gi|260179776|gb|ACX34554.1| pol protein [Human immunodeficiency virus 1]
gi|260179780|gb|ACX34556.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256010767|gb|ACU55240.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ V +
Sbjct: 596 YVDGAANRETXXGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGPXVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|255984930|gb|ACU46537.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIR 157
>gi|255984114|gb|ACU46129.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVXQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|226348660|gb|ACO50649.1| pol protein [Human immunodeficiency virus 1]
Length = 753
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 373 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 427
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 428 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 474
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 475 GGNEQVDKLVSAGIRK 490
>gi|222428251|gb|ACM49931.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQARPDKSESEVVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NEKVD++ N
Sbjct: 696 GIGGNEKVDKLVSNGIR 712
>gi|86277608|gb|ABC88328.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLQDTTNQKSELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 698 GGNEQIDKLVSSGIRK 713
>gi|49574431|gb|AAT66881.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 HVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNERVDKLVSTGIRK 558
>gi|4959869|gb|AAD34536.1| polymerase [Murine leukemia virus]
Length = 1180
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G V + ++I + + A+ + ++
Sbjct: 642 YTDGSSFLQEGQRKAGAAV----TTETEVIWARALPAGTSAQRELIALTQALKMAEGKRL 697
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGH 128
+YTDS Y + +++ G TS+ + +KN + ++A ++ + GH
Sbjct: 698 NVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 757
Query: 129 A-GN----QENEKVDRIARNAAVS 147
G+ + N D+ AR AA++
Sbjct: 758 QKGDSAEARGNRLADQAAREAAIN 781
>gi|1772626|gb|AAC32294.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANKETKLGKAGYVTNRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325637824|gb|ADZ35327.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|306477987|gb|ADM89368.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477983|gb|ADM89366.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477531|gb|ADM89140.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|260179768|gb|ACX34550.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179762|gb|ACX34547.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011506|gb|ACU55609.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI P +V
Sbjct: 599 YVDGASNRETKLGRAGY---VTNRGRQKVVSLTD---TTNQKTELHAIHLALQDSGP-EV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 699 GIGGNEQVDKLVSNGIRK 716
>gi|256011320|gb|ACU55516.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEELIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGXRKI 717
>gi|255984044|gb|ACU46094.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+ S + ++ + +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTDKGRQKVXSITDTTNQKTELQAIXL----ALQDSGLEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS Y + ++ + E + V L W+ H
Sbjct: 593 NXXTDSQYAJGII-------------QAQPDKSESELVSQIIEELIKKEXVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|238635298|gb|ACR52587.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYITDRGRQKIVPLTDTTNQKTELQAIYLALQ-----DSESEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDISESAIVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 703 GGNEQIDKLVSSGIRK 718
>gi|238635281|gb|ACR52572.1| pol protein [Human immunodeficiency virus 1]
gi|238635315|gb|ACR52602.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYITDRGRQKIVPLTDTTNQKTELQAIYLALQ-----DSESEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDISESAIVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 703 GGNEQIDKLVSSGIRK 718
>gi|125486708|gb|ABN42279.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|159031793|dbj|BAF91868.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 404 YVDGAANRETKLGKAGYVTDKGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGTEVNI 458
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 459 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 505
Query: 132 QENEKVDRI 140
NEKVD++
Sbjct: 506 GGNEKVDKL 514
>gi|3252938|gb|AAD12088.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 592 YVDGAANRETKIGKAGYA--------------------TDRGRQKIVTLTETTNQKTELQ 631
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + +V L WI H
Sbjct: 632 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKERVYLSWIPAHK 691
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 692 GIGGNEQVDKLVSNGIR 708
>gi|71794576|emb|CAI28818.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1432
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 1025 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIYLALQDSGP-EV 1077
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 1078 NVVTDSQYALGIIQAQPDQSESELVNQIIEKLIEKE-------------RVYLSWVPAHK 1124
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 1125 GIGGNEQVDKLVSNGIRK 1142
>gi|328834183|gb|AEB52621.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 593 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 646 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGVRK 710
>gi|326416736|gb|ADZ73221.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416730|gb|ADZ73218.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416724|gb|ADZ73215.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416652|gb|ADZ73179.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|326416638|gb|ADZ73172.1| pol protein [Human immunodeficiency virus 1]
gi|326416674|gb|ADZ73190.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|312601838|gb|ADQ92477.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRRRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|306478277|gb|ADM89513.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIHAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477989|gb|ADM89369.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477493|gb|ADM89121.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVIPITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|295314164|gb|ADF97415.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A+ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALH-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 650 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLIKKE-----KVYLAWVPAHKGI 696
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 697 GGNEQVDKL 705
>gi|289469830|gb|ADC96570.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289469770|gb|ADC96540.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256010879|gb|ACU55296.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRESKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|255984616|gb|ACU46380.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGXRK 158
>gi|255983970|gb|ACU46057.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTBRGRQKVXSLTBTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255983966|gb|ACU46055.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLXWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|255983922|gb|ACU46033.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETXLGKAGYVTDRGRQKVVAITDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSEGIR 656
>gi|145605184|ref|XP_365444.2| hypothetical protein MGG_13722 [Magnaporthe oryzae 70-15]
gi|145013034|gb|EDJ97675.1| hypothetical protein MGG_13722 [Magnaporthe oryzae 70-15]
Length = 312
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 90 EVRVRWCPGHQGIPGNDRADELAKAG 115
>gi|49574257|gb|AAT66800.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|71794596|emb|CAI28836.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 1023 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELYAIHLALQDSG-SEV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1076 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKA-------------KVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 1123 GIGGNEQVDKLVSSGIR 1139
>gi|288558579|dbj|BAI68346.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S + G+ E +R T + +
Sbjct: 192 YVDGAAS------------------RETKLGKAEYVTDRGRQKVVSLTETTNQKTELHAI 233
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
Y + G + + + E + KV L W+ H G
Sbjct: 234 YLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGI 293
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 294 GGNEQVDKLVSSGIRK 309
>gi|260179810|gb|ACX34571.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179802|gb|ACX34567.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179798|gb|ACX34565.1| pol protein [Human immunodeficiency virus 1]
gi|260179804|gb|ACX34568.1| pol protein [Human immunodeficiency virus 1]
gi|260179806|gb|ACX34569.1| pol protein [Human immunodeficiency virus 1]
gi|260179812|gb|ACX34572.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179788|gb|ACX34560.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|260179782|gb|ACX34557.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256010905|gb|ACU55309.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R + T +
Sbjct: 596 YVDGAANRETKLGRAGY--------------------VTDRGKQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGXEXNIVTDSQYALGIXHAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|256010863|gb|ACU55288.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRENKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRKI 715
>gi|328833914|gb|AEB52400.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638278|gb|ADZ35711.1| pol protein [Human immunodeficiency virus 1]
Length = 934
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 527 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 581
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 582 VTDSQYAIGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 628
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 629 GGNEQVDKLVSAGIRK 644
>gi|315258506|dbj|BAJ46180.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478285|gb|ADM89517.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRDTKLGKAGYVTNKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|288187625|gb|ADC42305.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|256011564|gb|ACU55638.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLTWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVSF 148
NE+ D++
Sbjct: 704 GGNEQXDKLVSAGIRKI 720
>gi|255984796|gb|ACU46470.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTNKGRQKVVSLTD---TTNQQTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|125486718|gb|ABN42288.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|157005024|gb|ABV00730.1| gag protein [Human immunodeficiency virus 1]
Length = 1441
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1034 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1088
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1089 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERIYLAWVPAHKGI 1135
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1136 GGNEQVDKLVSSGIRK 1151
>gi|37221217|gb|AAQ89740.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIRK 657
>gi|327458297|gb|AEA76588.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|327458295|gb|AEA76587.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|312602021|gb|ADQ92565.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + E + +V L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEELIKKERVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|306477937|gb|ADM89343.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A + AL +V
Sbjct: 441 YVDGAANRESKLGKAGY---VTNKGRQKVVS--LTDTTNQQTELQAILLALQDSG--GEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|302594708|gb|ADL59542.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A AL +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKTELHAVYLALQDSGP--EV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 54 NVVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIR 117
>gi|255984826|gb|ACU46485.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQXVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSXGIRK 158
>gi|125486697|gb|ABN42269.1| pol protein [Human immunodeficiency virus 1]
gi|125486727|gb|ABN42296.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|114801185|gb|ABI79792.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAADRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|82281206|sp|O93215|POL_HV190 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|4107489|gb|AAD03184.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S E T N+ + AI +V
Sbjct: 1028 YIDGAANRETKLGKAGY---VTDRGKQKVVSLTE---TTNQKTELQAIYLALQDSGL-EV 1080
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 1081 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHK 1127
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1128 GIGGNEQVDKLVSSGVRK 1145
>gi|11066869|gb|AAG28739.1|AF287355_1 pol protein [synthetic construct]
Length = 1002
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|68522154|gb|AAY98739.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + KG++KI+S E T N+ + AI+ +V
Sbjct: 592 YVDGAAHRETKTGKAGY---ITDKGRQKIVSLNE---TTNQKAELQAIQLALQDSGL-EV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIELLINKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE++D++ +
Sbjct: 692 GIGGNEQIDKLVSSGIRKA 710
>gi|313574256|dbj|BAJ41079.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306416408|gb|ADM87051.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G+ + +G++K++S E T N+ + AI +V
Sbjct: 441 YVDGAASKETKLEKAGY---VTDRGRQKVVSLTE---TTNQKTKLHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSK-------------SEIVNQIIEELIRKDKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G ++NE+VD++ +
Sbjct: 541 GIRKNEQVDKLVSSGIRK 558
>gi|306416394|gb|ADM87044.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + +V L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 541 GIGGNEQIDKLVSSGIRK 558
>gi|288187858|gb|ADC42416.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|255984396|gb|ACU46270.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKSGKAGYVTDKGRQKXXSJTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE D++
Sbjct: 143 GGNEHXDKLVSAGIRK 158
>gi|255984380|gb|ACU46262.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLXWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|222428414|gb|ACM50061.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|170676557|gb|ACB30422.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G + ++ + + A++ +V
Sbjct: 439 TLYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIR 557
>gi|38491870|gb|AAR22240.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E TTN + EL A L +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTE--TTNQKAELHAI--QLALRDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 649 NIVTDSQYS--------LGIIQAQPDRSDSELVNQIIEKLIEKE-----KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 696 GIGGNEQIDKLVSSGIRK 713
>gi|37221374|gb|AAQ89816.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTNRGRQKVISLTD---TTNQKTELEAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIRK 657
>gi|37221372|gb|AAQ89815.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTNRGRQKVISLTD---TTNQKTELEAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIRK 657
>gi|37221376|gb|AAQ89817.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGKAGY---VTNRGRQKVISLTD---TTNQKTELEAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIRK 657
>gi|14571891|gb|AAK67310.1| pol protein [Human immunodeficiency virus 1]
Length = 995
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E T N+ + AI +V
Sbjct: 588 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE---TTNQKTELHAIYLALQDSGL-EV 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 641 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLAWVPAHK 687
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 688 GIGGNEQVDKLVSSGIRK 705
>gi|83722764|gb|ABC41656.1| pol protein [Feline immunodeficiency virus]
Length = 1135
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL A ++
Sbjct: 605 YIDGGRKKGQKARAGW------WKNNQEWQIMELEGSNQTAEAQALNMALKAGPEKMNII 658
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + L W+ GH G
Sbjct: 659 --TDSQYVYNMVM--------------ARPEPTDPLWKEIIEELQKKEAIFLDWVPGHKG 702
Query: 131 NQENEKVDRI 140
N++VD I
Sbjct: 703 IPGNKEVDEI 712
>gi|78172417|gb|ABB29307.1| pol protein [Feline immunodeficiency virus]
Length = 1145
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL A ++
Sbjct: 607 YIDGGRKKGQKARAGW------WKNNQEWQIMELEGSNQTAEAQALNMALKAGPEKMNII 660
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + L W+ GH G
Sbjct: 661 --TDSQYVYNMVM--------------ARPEPTDPLWKEIIEELQKKEAIFLDWVPGHKG 704
Query: 131 NQENEKVDRI 140
N++VD I
Sbjct: 705 IPGNKEVDEI 714
>gi|49574234|gb|AAT66790.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|38326771|gb|AAR17513.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGVRKI 713
>gi|326416710|gb|ADZ73208.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIGKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306478055|gb|ADM89402.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR + T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGKQKVVSLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + +V L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|289469788|gb|ADC96549.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|266706153|gb|ACY78385.1| pol protein [Caprine arthritis encephalitis virus]
Length = 1104
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G + K + G + R A + + L
Sbjct: 577 YTDGGKKN--KMGSLGFIASTGEKFRKHEEGTNQQLELRAIEEALKQGPPTMN------L 628
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + D++ ++N A + K+ ++W+ GH G
Sbjct: 629 VTDSRYAFEFLLRNW-----------DEEVIRNPIQTRIMELAHKKEKIGVHWVPGHKGI 677
Query: 132 QENEKVDR------IARNA 144
+NE++DR +A+
Sbjct: 678 PQNEEIDRYISEIFLAKEG 696
>gi|256011100|gb|ACU55406.1| pol protein [Human immunodeficiency virus 1]
Length = 964
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 557 YVDGAASRETRLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 611
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 612 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLXWVPAHKGI 658
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 659 GGNEQVDKLVSTGIR 673
>gi|255984320|gb|ACU46232.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|57901080|gb|AAW57847.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGASNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638629|gb|ADZ36007.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|306478183|gb|ADM89466.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAVYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|255984768|gb|ACU46456.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVXSLADTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|255984688|gb|ACU46416.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDRGRQKVVSLNE---TTNQKTELHAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + V L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEXVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSXGIRK 158
>gi|328834415|gb|AEB52827.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSESEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|327458363|gb|AEA76621.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSKIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE VD +
Sbjct: 543 GGNEXVDXLVSAGIRK 558
>gi|325637784|gb|ADZ35292.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKAELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIR 716
>gi|312601905|gb|ADQ92509.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478209|gb|ADM89479.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478193|gb|ADM89471.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAVYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306478165|gb|ADM89457.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478163|gb|ADM89456.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478089|gb|ADM89419.1| pol protein [Human immunodeficiency virus 1]
gi|306478091|gb|ADM89420.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNLIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|302594688|gb|ADL59532.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 53
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + + KV L W+ H
Sbjct: 54 NIVTDSQYA--------LGIIQGQPDRSDSELVNLIIEKLIGKD-----KVYLSWVPAHK 100
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 101 GIGGNEQVDKLVSNGIRK 118
>gi|289187209|gb|ADC92184.1| pol protein [Human immunodeficiency virus 1]
Length = 655
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 18/134 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAA 145
NE++D++
Sbjct: 642 GGNEQIDKLVSAGI 655
>gi|288187737|gb|ADC42359.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGGEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|255984782|gb|ACU46463.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKVGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKXKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VB++
Sbjct: 143 GGNEQVBKLVSTGIRK 158
>gi|170676561|gb|ACB30424.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|47118231|gb|AAT11229.1| pol protein [Human immunodeficiency virus 1]
Length = 948
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 541 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 595
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 596 VTDSQYA-------------LGIIQAQPDKSESGLVNQIIEELIKKEKVYLAWVPAHKGI 642
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 643 GGNEQVDKLVSTGIRK 658
>gi|38491586|gb|AAR21987.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRRI 714
>gi|62997630|gb|AAY24680.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|328834406|gb|AEB52819.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEALIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601921|gb|ADQ92517.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306478215|gb|ADM89482.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306478015|gb|ADM89382.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A + AL +V
Sbjct: 441 YVDGAANRESKLGKAGY---VTNKGRQKVVS--LTDTTNQQTELQAILLALQDSGV--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306416456|gb|ADM87075.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VSNRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + +V L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 541 GIGGNEQIDKLVSSGIRK 558
>gi|256011728|gb|ACU55720.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011084|gb|ACU55398.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEHLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 699 GGNEKVDKLVSTGIRK 714
>gi|255984832|gb|ACU46488.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSMTDTTNQKTELXAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSTGIRK 158
>gi|255984568|gb|ACU46356.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSTGIRKI 159
>gi|251810868|ref|ZP_04825341.1| ribonuclease H [Staphylococcus epidermidis BCM-HMP0060]
gi|251805548|gb|EES58205.1| ribonuclease H [Staphylococcus epidermidis BCM-HMP0060]
gi|329737255|gb|EGG73509.1| EbsB family protein [Staphylococcus epidermidis VCU028]
Length = 130
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
+ D A GNPG ++++ + + E N+ E A + AL +
Sbjct: 3 KIHFDAATKGNPGRSACAIIIKENSQRYTFTHDLGEMDNHSAEWAAMLHALEHARELKVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LL+TDS + Q + K + ++ V
Sbjct: 63 NALLFTDSKLIEDSMMQGKV---------KNAKFKVYFENIEILEQSFDLMFVRW----- 108
Query: 128 HAGNQENEKVDRIARN 143
++N++ +++A+
Sbjct: 109 -IPRKQNKEANQLAQQ 123
>gi|145605194|ref|XP_365448.2| hypothetical protein MGG_02150 [Magnaporthe oryzae 70-15]
gi|145013040|gb|EDJ97681.1| hypothetical protein MGG_02150 [Magnaporthe oryzae 70-15]
Length = 269
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V + W GH G N++ D +A+
Sbjct: 93 EVRVRWCPGHQGIPGNDRADELAKAG 118
>gi|37221430|gb|AAQ89844.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|37221211|gb|AAQ89737.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|37221209|gb|AAQ89736.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|13095330|gb|AAK12229.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG+ K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRRKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQTIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD++
Sbjct: 543 GIGGNDQVDKLVSAGIRK 560
>gi|49574218|gb|AAT66783.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1289518|gb|AAC55949.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVATLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|312601931|gb|ADQ92522.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLKDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQITEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 698 GGNEQIDKLVSNGIRK 713
>gi|289469870|gb|ADC96590.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNXGXQKVVSLTDTTNQKTELXAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|260179796|gb|ACX34564.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011414|gb|ACU55563.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTDRGRQXVVSLADTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 651 VTDSQYALGIIHAQPDRSE-------------SEIVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|194270582|gb|ACF36837.1| pol polyprotein [Human immunodeficiency virus 1]
gi|194270584|gb|ACF36838.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|39777395|gb|AAR30975.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGVRKI 713
>gi|14030530|gb|AAK52938.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 428 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSG-AEV 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 481 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHK 527
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 528 GIGGNEQVDKLVSTGIRK 545
>gi|49574236|gb|AAT66791.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|60651987|gb|AAX33066.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|306478197|gb|ADM89473.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KGK+K+IS +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRET-KSGKAGYVTNKGKQKVIS--LTDTTNQKTELHAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIHAQPDKSESELVSEIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|255984492|gb|ACU46318.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGQAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984004|gb|ACU46074.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTNRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|167832866|gb|ACA02015.1| pol protein [Human immunodeficiency virus 1]
Length = 707
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKIITLTETTNQKTELQAIQLALQ-----DSGSXVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 648 XTDSQYAJGII-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 695 GGNEQVDKL 703
>gi|114430833|dbj|BAF31631.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|18766384|gb|AAL78990.1|AF465242_2 pol polyprotein [Simian-Human immunodeficiency virus]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|328834563|gb|AEB52959.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|328834544|gb|AEB52942.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIGKDKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|325638714|gb|ADZ36081.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|325638645|gb|ADZ36021.1| pol protein [Human immunodeficiency virus 1]
gi|325638653|gb|ADZ36028.1| pol protein [Human immunodeficiency virus 1]
gi|325638669|gb|ADZ36042.1| pol protein [Human immunodeficiency virus 1]
gi|325638693|gb|ADZ36063.1| pol protein [Human immunodeficiency virus 1]
gi|325638700|gb|ADZ36069.1| pol protein [Human immunodeficiency virus 1]
gi|325638708|gb|ADZ36076.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|306478251|gb|ADM89500.1| pol protein [Human immunodeficiency virus 1]
Length = 771
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + G++ + + A++ +V +
Sbjct: 364 YVDGAANRETKLGKAGYVTDRGGQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 418
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 419 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 465
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 466 GGNEQVDKLVSNGIRK 481
>gi|295810659|gb|ADG34202.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|289187364|gb|ADC92260.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187358|gb|ADC92257.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187193|gb|ADC92176.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187935|gb|ADC42454.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288187580|gb|ADC42283.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984342|gb|ACU46243.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIR 157
>gi|226348688|gb|ACO50663.1| pol protein [Human immunodeficiency virus 1]
Length = 752
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 374 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELHAIHLALQ-----DSGADVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIRKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 476 GGNEQVDKLVSSGIRK 491
>gi|194270586|gb|ACF36839.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|194270578|gb|ACF36835.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|49574223|gb|AAT66785.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|1906384|gb|AAB50259.1| pol polyprotein (NH2-terminus uncertain) [Human immunodeficiency
virus 1]
Length = 912
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 505 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 560 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 607 GGNEQVDKLVSAGIRK 622
>gi|74315760|gb|ABA02484.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQ-----DSGSQVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGVRK 713
>gi|325638722|gb|ADZ36088.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|284192167|gb|ADB82803.1| pol protein [Simian immunodeficiency virus]
Length = 743
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + K K+++ E T N+ + AIK P +V
Sbjct: 452 YVDGAANRTSKLGKAGY---ITARNKSKVVALEE---TTNQKAELEAIKLALQDSGP-RV 504
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y T+ N + + V L W+ H
Sbjct: 505 NIVTDSQYALGIL-------------TASPDQSDNPIVREIIELMIGKEGVYLGWVPAHK 551
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 552 GIGGNEQVDKLVSQGIRQ 569
>gi|260179808|gb|ACX34570.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSEAELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256011490|gb|ACU55601.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDXTXQKTELK 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ + G + ++ + E KV L W+ H
Sbjct: 636 AIHLALQDSGSXVNIVTXSQYALGIIQAQPDKSESELVSXIIEELIKXEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIXGNEQVDKLVSTGIRK 713
>gi|256011094|gb|ACU55403.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010685|gb|ACU55199.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|37221207|gb|AAQ89735.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|281407|pir||S28081 pol polyprotein - simian immunodeficiency virus
gi|334687|gb|AAB49569.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1009
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+ + L V Y DGA + + G G + + + A++
Sbjct: 593 LSPEPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQTELHAVKLALE- 651
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V + TDS YV S + + + K
Sbjct: 652 ----DSGSYVNIVTDSQYVVGIL-------------ASRPTETDHPIVKEIIELMKGKEK 694
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE++D++ +
Sbjct: 695 IYLSWLPAHKGIGGNEQIDKLVSSGIRK 722
>gi|325636212|gb|ADZ33964.1| pol protein [Human immunodeficiency virus 1]
gi|325636220|gb|ADZ33971.1| pol protein [Human immunodeficiency virus 1]
gi|325636236|gb|ADZ33985.1| pol protein [Human immunodeficiency virus 1]
gi|325636244|gb|ADZ33992.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKDKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|289187266|gb|ADC92212.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187759|gb|ADC42370.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|288187724|gb|ADC42353.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|260179800|gb|ACX34566.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSEAELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256010797|gb|ACU55255.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 603 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 657
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 658 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 704
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 705 GGNEQVDKLVSTGIRRI 721
>gi|226348640|gb|ACO50639.1| pol protein [Human immunodeficiency virus 1]
Length = 270
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 104 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAVHLALQ-----DSGLEVNI 158
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + ++ + E + KV L W+ H G
Sbjct: 159 VTDSQYV-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 205
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 206 GGNEQVDKLVSTGIRKI 222
>gi|170676551|gb|ACB30419.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|49574457|gb|AAT66894.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GRNEQVDKLVSTGIRK 558
>gi|6594659|gb|AAF18575.1| Pol polyprotein [Simian immunodeficiency virus]
Length = 1013
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + TTN + EL A AL ++ V +
Sbjct: 601 YVDGAANRETKKGKAGYVTDRGRQKIVN---LENTTNQKAELTAVYLALQDAEHI--VNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + E + K L W+ H G
Sbjct: 656 VTDSQYVLGIIHSQPDQSE-------------SELVNLIIEELIKKEKSYLSWVPAHKGV 702
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 703 GGNEQVDKL 711
>gi|88853349|emb|CAJ01227.1| gag-pol precursor [Human immunodeficiency virus 1]
Length = 1431
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1024 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 1076
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV + + +K ++ KV L W+ H
Sbjct: 1077 NIVTDSQYVLGIIQAQPDRSESGLVNQIIEKLIEKE-------------KVYLSWVPAHK 1123
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 1124 GIGGNEQVDKLVSSGIRK 1141
>gi|88853113|emb|CAJ01210.1| gag-pol precursor [Human immunodeficiency virus 1]
Length = 1434
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 1027 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 1066
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + K+ L W+ H
Sbjct: 1067 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKEKIYLSWVPAHK 1126
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 1127 GIGGNEKVDKLVSSGIRK 1144
>gi|306477999|gb|ADM89374.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477981|gb|ADM89365.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|289469792|gb|ADC96551.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRKI 559
>gi|282598023|gb|ADA83269.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++G + T +A +V
Sbjct: 596 YVDGAANRETKLGKAGY-VTDRGRQKVVSLTGTTNQKTELHAIHLAL------QDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|226348578|gb|ACO50608.1| pol protein [Human immunodeficiency virus 1]
Length = 688
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 370 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIHLALQ-----DSGLEVNI 424
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 425 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 471
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 472 GGNEQVDKLVSAGIR 486
>gi|114430773|dbj|BAF31577.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|49574228|gb|AAT66787.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|49574243|gb|AAT66794.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289469911|gb|ADC96610.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELHAIYIALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIXK 558
>gi|256011282|gb|ACU55497.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 20/138 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 654 VTDSQYALGII--------------QAQPDKSESEJVSQIIEQLINKEKVYLAWVPAHKG 699
Query: 131 NQENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 700 IGGNEQIDKLVSTGIRKI 717
>gi|255984506|gb|ACU46325.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S ETTN + EL A AL +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LPETTNQKTELHAIYLALQDSG--SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIEKERVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 141 GIGGNEQIDKLVSSGIRK 158
>gi|255984332|gb|ACU46238.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVXTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKXKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 143 GGNEXVDKLVSTGIRK 158
>gi|226348618|gb|ACO50628.1| pol protein [Human immunodeficiency virus 1]
Length = 445
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 84 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 138
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 139 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 185
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 186 GGNEQVDKLVSTGIRK 201
>gi|222428549|gb|ACM50169.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIHAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGVR 712
>gi|114801505|gb|ABI80075.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVGSGIRK 713
>gi|4239649|gb|AAD13359.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 591 YVDGAANRETKLGKAGYVTDRGRQIVVSLTETTNQKTELHAIHLALQ-----DSGSEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 646 VTDSEYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|312601957|gb|ADQ92535.1| pol protein [Human immunodeficiency virus 1]
Length = 987
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 580 YVDGAANRDTKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 634
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 635 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKDRVYLAWVPAHKGI 681
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 682 GGNEQIDKLVSAGIRK 697
>gi|306477913|gb|ADM89331.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|256011470|gb|ACU55591.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSKIIEELIKKEXVYLXWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|256011420|gb|ACU55566.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQKTELQAIHLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDXSESELVSQIIELLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVSAGIRK 715
>gi|255984484|gb|ACU46314.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIXLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|226348580|gb|ACO50609.1| pol protein [Human immunodeficiency virus 1]
Length = 567
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDTSESELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|222428603|gb|ACM50212.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 596 YVDGASNRETKLGRAGY--------------------VTNRGRQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQLIKKDKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|222428394|gb|ACM50045.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 601 YVDGAANRETKLGRAGY--------------------VTDRGRQKVVSLTDTTNQKTELQ 640
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 641 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 701 GIGGNEQVDKLVSAGIRK 718
>gi|188588924|ref|YP_001920108.1| ribonuclease HI [Clostridium botulinum E3 str. Alaska E43]
gi|188499205|gb|ACD52341.1| ribonuclease HI [Clostridium botulinum E3 str. Alaska E43]
Length = 317
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 15/151 (9%)
Query: 1 MDSKHLRE-VHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELM---- 54
+D K+ + +H Y DG+ + +GV++ + E I SG K +N + +
Sbjct: 66 LDGKYPNDCLHIYVDGSYNICTSQYSYGVVVVKENIVEYIDSGVGKNNPDNNIRQIAGEL 125
Query: 55 -AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
AIK + + + Y + ++ + K ++ +
Sbjct: 126 KGAIKGVEYALSCGEKKVVIFHDYAGICYHATGTWERKEESSKAYYKRMQEL-------- 177
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ +V + H G+ NE D + A
Sbjct: 178 MNNGIEVIFVKVDSHTGDFFNELADEKCKEA 208
>gi|157005015|gb|ABV00722.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELHAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|114430733|dbj|BAF31541.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|14269048|gb|AAK58005.1|AF362994_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSRIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|31559624|dbj|BAC77452.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI P +V
Sbjct: 1023 YVDGAASRETKLGKAGY---VTDRGRQKVVSLAE---TTNQKTELHAIHLALQDSGP-EV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + E + KV L W+ H
Sbjct: 1076 NIVTDSQYALEIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 1122
Query: 130 GNQENEKVDRI 140
G NEKVD++
Sbjct: 1123 GIGGNEKVDKL 1133
>gi|325638677|gb|ADZ36049.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|312601889|gb|ADQ92501.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478279|gb|ADM89514.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306478129|gb|ADM89439.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANREAKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477909|gb|ADM89329.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306477893|gb|ADM89321.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|238733957|gb|ACR55218.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430703|dbj|BAF31514.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430743|dbj|BAF31550.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430783|dbj|BAF31586.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|57869599|gb|AAW57646.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|18699194|gb|AAL78454.1|AF413987_9 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKTGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|77416892|sp|P35963|POL_HV1Y2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|11066865|gb|AAG28737.1|AF287353_1 gag-pol fusion protein [synthetic construct]
Length = 1435
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1130 GGNEQVDKLVSAGIRK 1145
>gi|327458311|gb|AEA76595.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRESKLGKAGYVTDKGRQKVVNLTDTTNQQTELQAVYLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + + + KV L W+ H G
Sbjct: 496 VTDSQYV-------------LGIIQAQPDQSDSALVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477977|gb|ADM89363.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477903|gb|ADM89326.1| pol protein [Human immunodeficiency virus 1]
gi|306477905|gb|ADM89327.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306477901|gb|ADM89325.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306477899|gb|ADM89324.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306477897|gb|ADM89323.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|299507991|dbj|BAJ09929.1| pol protein [Human immunodeficiency virus 2]
Length = 1041
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 621 YTDGSCNRVSKEGKAGYVTDRGRDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 675
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + V + W+ H G
Sbjct: 676 IVDSQYVMGIIAGQPTETE-------------SSIVNRIIEEMIKKEAVYVGWVPAHKGL 722
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 723 GGNQEVDHLVSQGIRQ 738
>gi|288187672|gb|ADC42327.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEHIDKLVSAGVRK 657
>gi|256011242|gb|ACU55477.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNRGRQKVVSLXDTTNQKTELQAIXLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|256010871|gb|ACU55292.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256010811|gb|ACU55262.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGXEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV W+ H G
Sbjct: 652 VTDSQYXJGII-------------QAQPDKSESELVXQIIEQLIKKEKVYXAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|148469887|gb|ABQ65877.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAATRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|114430653|dbj|BAF31469.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|57869590|gb|AAW57638.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|42592286|emb|CAF29004.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 569
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 426 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 480
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 481 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIQKEKVYLAWVPAHKGI 527
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 528 GGNEQVDKLVSTGIRK 543
>gi|37221280|gb|AAQ89771.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|61102618|gb|AAX37753.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|306478333|gb|ADM89541.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAXXLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + ++ +K KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDKSESELVSQIIEQLJKKE-------------KVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477979|gb|ADM89364.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477907|gb|ADM89328.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|306416328|gb|ADM87011.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 541 GIGGNEQIDKLVSSGIRK 558
>gi|289187406|gb|ADC92280.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|256011554|gb|ACU55633.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVTQIIEQLIKKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIRK 713
>gi|256010775|gb|ACU55244.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|255984922|gb|ACU46533.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKIVPLTDTTNQKTELHAIXLALQ-----DSGLEVNX 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|114801429|gb|ABI80011.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVGQIIEQLIKKGRVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114430803|dbj|BAF31604.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|14030510|gb|AAK52928.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 428 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 482
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 483 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 529
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 530 GGNEQVDKLVSTGIRK 545
>gi|312601814|gb|ADQ92465.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|306478253|gb|ADM89501.1| pol protein [Human immunodeficiency virus 1]
Length = 719
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 312 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 366
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 367 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 413
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 414 GGNEQVDKLVSTGIRK 429
>gi|306477985|gb|ADM89367.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477973|gb|ADM89361.1| pol protein [Human immunodeficiency virus 1]
gi|306477975|gb|ADM89362.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIQKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|256011648|gb|ACU55680.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|212674668|gb|ACJ37089.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 651 VTDSQYA--------LGIIQAEPDTSESELVNQIIEQLIKKE-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|170778883|gb|ACB36841.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRXTKIGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIR 557
>gi|114430643|dbj|BAF31460.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|37221514|gb|AAQ89885.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|37221512|gb|AAQ89884.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306477991|gb|ADM89370.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477755|gb|ADM89252.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477487|gb|ADM89118.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|306477483|gb|ADM89116.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|289187348|gb|ADC92252.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTBKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEXVNQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE VD++
Sbjct: 543 GGNEXVDKLVSAGVR 557
>gi|289187191|gb|ADC92175.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++DR+
Sbjct: 642 GGNEQIDRLVSTGIRK 657
>gi|256011352|gb|ACU55532.1| pol protein [Human immunodeficiency virus 1]
Length = 979
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 572 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 626
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 627 VTDSQYA-------------LGIIQAQPDKSESELVSQXIEQLIKKEKVYLAWVPAHKGI 673
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 674 GGNEQVDKLVSXGIRK 689
>gi|256011298|gb|ACU55505.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|255984428|gb|ACU46286.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 143 GGNEHIDKLVSAGIRK 158
>gi|222428271|gb|ACM49947.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 699 GGNEQIDKLVSAGIRK 714
>gi|170778907|gb|ACB36853.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|134058552|emb|CAK96440.1| unnamed protein product [Aspergillus niger]
Length = 299
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 11 AYTDGACSGN------PGPGGWGVLLRYKGKEKIISG-------------GEKETTNNRM 51
YT GAC N GW + R + + I+G T+ R
Sbjct: 124 VYTAGACHDNWKGDENYAKAGWSFVYRPQNPSRNITGGVAGRLEMTGPTKVYHRQTSTRA 183
Query: 52 ELMAAI----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
EL A I +++ TDSSYV G + WI+KW GW+++ K +KN DL
Sbjct: 184 ELRAVIAALKYLSHDGNTFDSLVIATDSSYVVNGATLWIRKWLSKGWRSAIGKPIKNKDL 243
Query: 108 WMKFVEASAQHKVDLYWIK-GHAGNQENEKVDRIARNA 144
W ++ + I H N+ R+A A
Sbjct: 244 WEALLKEVRCWYEEGREIYLWHIDRLHNQDAVRLANWA 281
>gi|114430903|dbj|BAF31694.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114431003|dbj|BAF31784.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|312601866|gb|ADQ92490.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478265|gb|ADM89507.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEXVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|255984224|gb|ACU46184.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETXLGXAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|147744252|gb|ABQ51069.1| pol protein [Simian immunodeficiency virus]
Length = 1000
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + + TTN + EL A AL +V +
Sbjct: 593 YVDGAANRESKKGRAGYV---TDRGRYRTKDLENTTNQQAELWAIDLALRDSG--AQVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 648 VTDSQYVIGVLQGLPDQS-------------DSPIVEQIIQQLTQKTAIYLAWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 695 GGNEEVDKL 703
>gi|119612025|gb|EAW91619.1| hCG1647242 [Homo sapiens]
Length = 526
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 5 HLREVHAYTDGAC-SGNP-GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+++ YTDG+ N G+ ++ + S T+ ++ + A+
Sbjct: 235 TNPDLNLYTDGSSVVENGIRRAGYAIV---SDVTILESKPLVPGTSAQLAELVALTRALE 291
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
L + +YTDS Y + W++ + TS + ++ +V +
Sbjct: 292 LGKGKIINVYTDSKYAYLILHAHAAIWKEWEFLTSGNPHGCHREVMELLHMVQETKEVGV 351
Query: 123 YWIKGHAG 130
+ H
Sbjct: 352 LHYQSHQN 359
>gi|114430623|dbj|BAF31442.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114431043|dbj|BAF31820.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430853|dbj|BAF31649.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430983|dbj|BAF31766.1| Pol [Human immunodeficiency virus 1]
gi|114430993|dbj|BAF31775.1| Pol [Human immunodeficiency virus 1]
gi|114431013|dbj|BAF31793.1| Pol [Human immunodeficiency virus 1]
gi|114431023|dbj|BAF31802.1| Pol [Human immunodeficiency virus 1]
gi|114431033|dbj|BAF31811.1| Pol [Human immunodeficiency virus 1]
gi|114431053|dbj|BAF31829.1| Pol [Human immunodeficiency virus 1]
gi|114431063|dbj|BAF31838.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|3002841|gb|AAD03200.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1438
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1031 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1085
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1086 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 1132
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1133 GGNEQVDKLVSAGIRK 1148
>gi|56609328|gb|AAW03280.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESGIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
N++VD++ N
Sbjct: 698 GGNKQVDKLVSNGIR 712
>gi|289187341|gb|ADC92249.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGIEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|260179794|gb|ACX34563.1| pol protein [Human immunodeficiency virus 1]
Length = 531
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 110 YVDGAANRETKVGKAGYVTNRGRQKVVSLADTTNQKTELQAINLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|256010947|gb|ACU55330.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLINKDKVYXAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIRK 712
>gi|226348630|gb|ACO50634.1| pol protein [Human immunodeficiency virus 1]
Length = 460
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 80 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 134
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 135 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 181
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++
Sbjct: 182 GGNEKVDKLVSAGIRK 197
>gi|124013767|gb|ABD39700.1| pol protein [Simian immunodeficiency virus]
Length = 1000
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + + TTN + EL A AL +V +
Sbjct: 593 YVDGAANRESKKGRAGYV---TDRGRYRTKDLENTTNQQAELWAIDLALRDSG--AQVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + + + + L W+ H G
Sbjct: 648 VTDSQYVIGVLQGLPDQS-------------DSPIVEQIIQQLTQKTAIYLAWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 695 GGNEEVDKL 703
>gi|37221213|gb|AAQ89738.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 540 YVDGAANRETXLGKAGYVTSRGRQXVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|60651957|gb|AAX33039.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|312601972|gb|ADQ92542.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|312601878|gb|ADQ92496.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478239|gb|ADM89494.1| pol protein [Human immunodeficiency virus 1]
Length = 808
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 401 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGGEVNI 455
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 456 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 502
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 503 GGNEQVDKLVSNGIR 517
>gi|306477491|gb|ADM89120.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|306477489|gb|ADM89119.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|306477479|gb|ADM89114.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|7321145|emb|CAB82227.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV + W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYVSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|11095912|gb|AAG30116.1|AF286365_2 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1130 GGNEQVDKLVSSGIRK 1145
>gi|328834083|gb|AEB52532.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNLIIEQLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRRI 714
>gi|326416750|gb|ADZ73228.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ ++ L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RIYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDQLVSSGIRK 657
>gi|325635331|gb|ADZ33206.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|312601929|gb|ADQ92521.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|312601899|gb|ADQ92506.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|312601791|gb|ADQ92455.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306477911|gb|ADM89330.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|299802368|gb|ADJ52025.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|238733828|gb|ACR55105.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + ETTN + EL A AL +V +
Sbjct: 596 YVDGAANRDSKIGKAGYVTDRGRQKVVS---LTETTNQKTELHAIYLALQDSGP--EVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQATPDRSESELVNQIIEKLIGKD-------------KVYLSWVPPHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|114430673|dbj|BAF31487.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|114430873|dbj|BAF31667.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ NR T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 636 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|38679159|gb|AAR26411.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 595 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIRKDKVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSPGIRK 712
>gi|37221528|gb|AAQ89892.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|22596243|gb|AAN03034.1|AF457053_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ K+ L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KIYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|312601937|gb|ADQ92525.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478065|gb|ADM89407.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A + AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNKGRQKVVS--LTDTTNQKTELHAILLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + +V L W+ H
Sbjct: 494 NIVTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 541 GIGGNEQVDKLVSNGIRK 558
>gi|306478047|gb|ADM89398.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AVYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|112351499|gb|ABI15286.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A+K +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRHKVVSLTDTTNQKTELQAIYLALKDSGLEAN-----I 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIQKERVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63014631|gb|AAY25784.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 594 YVDGAANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQ-----DSELEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIGKERVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 696 GGNEQVDKLVSSGIRK 711
>gi|49574248|gb|AAT66796.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNRIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|6651481|gb|AAF22329.1|AF193277_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDITNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKFYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|62956377|gb|AAY23511.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|326370902|gb|ADZ56650.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ NR T +
Sbjct: 602 YVDGAANRDTKLGKAGY--------------------VTNRGRQKVVSLTDTTNQKTELH 641
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 642 AIYLALQDSGLKVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSTGIRK 719
>gi|312601974|gb|ADQ92543.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306477731|gb|ADM89240.1| pol protein [Human immunodeficiency virus 1]
gi|306477733|gb|ADM89241.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477575|gb|ADM89162.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|288187642|gb|ADC42313.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE +D++ N
Sbjct: 543 GGNEHIDKLVSNGIRK 558
>gi|256010693|gb|ACU55203.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE+VB++
Sbjct: 708 GGNEQVBKLVSAGIRK 723
>gi|255984726|gb|ACU46435.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAHPDKSXSELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 143 GGNEQVDKL 151
>gi|186940973|dbj|BAG31106.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVR 712
>gi|157840813|gb|ABV83026.1| pol protein [Human immunodeficiency virus 2]
Length = 1039
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A++ +V +
Sbjct: 621 YTDGSCNKASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALQ-----DSGPQVNI 675
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + + + W+ H G
Sbjct: 676 IVDSQYVMGII-------------AAQPTETESPIVTXIIEEMIKKEAIYVGWVPAHKGL 722
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 723 GGNQEVDHLVSQGIRQ 738
>gi|56609292|gb|AAW03248.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESGIVNNIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
N++VD++ N
Sbjct: 698 GGNKQVDKLVSNGIR 712
>gi|328834386|gb|AEB52801.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 593 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 632
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 633 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 693 GIGGNEQVDKLVSSGIR 709
>gi|312601959|gb|ADQ92536.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306477829|gb|ADM89289.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|291534110|emb|CBL07223.1| RNase H [Megamonas hypermegale ART12/1]
Length = 114
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 51 MELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMK 110
EL + K + D V + +W WKT+ + T +
Sbjct: 23 SELHNVAGEIQGAMEATKWAIAHDEKIVICHDYIGLSEWALGNWKTNKELTKAYAEFMKP 82
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++ H V + GH G NE D++A+ A
Sbjct: 83 YL-----HLVTFKKVAGHTGVLGNELADKLAKQA 111
>gi|289469796|gb|ADC96553.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQXVXXLNDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE VD++ +
Sbjct: 543 GGNEHVDKLVSSGIRK 558
>gi|289187308|gb|ADC92233.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|255984184|gb|ACU46164.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ I + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIXKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|226348506|gb|ACO50572.1| pol protein [Human immunodeficiency virus 1]
Length = 747
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 370 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 424
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 425 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 471
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 472 GGNEQVDKLVSNGIRK 487
>gi|13095361|gb|AAK12243.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
DGA + G G + ++ + + A++ +V +
Sbjct: 444 VDGAANRETKLGEAGYVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGSEVNIV 498
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
TDS Y + + + + + + KV L W+ H G
Sbjct: 499 TDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGIG 545
Query: 133 ENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 546 GNEQVDKLVSAGIRK 560
>gi|326370893|gb|ADZ56642.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478031|gb|ADM89390.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306477941|gb|ADM89345.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306477735|gb|ADM89242.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477485|gb|ADM89117.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 496 VTDSQYALGIIQAQPDRGE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|289469860|gb|ADC96585.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|256011532|gb|ACU55622.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 558 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + KV L W+ H G
Sbjct: 613 VTDSQYAJGII-------------QAQPDKSESELVSQIIEXLINKEKVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 660 GGNEQVDKLVSAGIRK 675
>gi|255984126|gb|ACU46135.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYV---TBKGRQKAXSLTDTTNQKTELHAIHLALQDSG--SEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKXXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE VD++
Sbjct: 642 GGNEXVDKLVSAGIRK 657
>gi|226348636|gb|ACO50637.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 373 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 427
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 428 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 474
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 475 GGNEQVDKLVSSGIRK 490
>gi|288187832|gb|ADC42403.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYITNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 642 GGNEQIDKLVSAGVRKI 658
>gi|288187686|gb|ADC42334.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQQTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|301090357|ref|XP_002895397.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099018|gb|EEY57070.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 204
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 33/133 (24%), Gaps = 4/133 (3%)
Query: 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD 74
G GNPGPGG V++R T + +
Sbjct: 54 GGSRGNPGPGGSAVVIRTADATVRAQVCWIGTMSYANPRFTNSMGEHLGLFCGLKACDKH 113
Query: 75 SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQEN 134
+ +Q + K W A V + H + +
Sbjct: 114 TFEPLHVIGGSAMIIRQLKQRKPLKTKHLQNYYWQSRKLADRLDVVAWH----HHLREFS 169
Query: 135 EKVDRIARNAAVS 147
+ VD A A +
Sbjct: 170 KMVDTFANMAMDN 182
>gi|256011040|gb|ACU55376.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ V R K K +S + T + +A +V
Sbjct: 602 YVDGAABRXTKLGKAGY-VTDRGKQKVVSLSDTTNQKTELQAIHLAL------QDSGLEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 655 NIVTDSQYA-------------LGIIQAQPDKSDSELVSQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSTGIRK 719
>gi|157005103|gb|ABV00801.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIHLALQ-----DSGAEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 701 GGNEQXDKLVSXGIRK 716
>gi|39777435|gb|AAR31011.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS + + + +K + KV L W+ H
Sbjct: 649 NIVTDSQFALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|13095242|gb|AAK12197.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YIDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYSTWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|88174698|gb|ABD39438.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 601 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 653
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 654 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKERVYLAWVPAHK 700
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 701 GIGGNEQVDKLVSSGIRK 718
>gi|332138243|pdb|3QO9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
Length = 557
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 545 GGNEQVDKL 553
>gi|325637288|gb|ADZ34868.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIR 713
>gi|312601793|gb|ADQ92456.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|307568173|pdb|3KLF|A Chain A, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
gi|307568175|pdb|3KLF|E Chain E, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
gi|307568177|pdb|3KLF|I Chain I, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
gi|307568179|pdb|3KLF|M Chain M, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 557
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 545 GGNEQVDKL 553
>gi|306477737|gb|ADM89243.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|293651880|pdb|3IRX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
gi|293651882|pdb|3IS9|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate)
Length = 558
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 444 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 498
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 499 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 545
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 546 GGNEQVDKL 554
>gi|289469812|gb|ADC96561.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTDRGRQKAVPLTNTTNQKTELHAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|289187207|gb|ADC92183.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|284793965|pdb|3IG1|A Chain A, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
Length = 555
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|256011310|gb|ACU55511.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVISITD---TTNQKTELQAIYLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLINKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 696 GIGGNEQIDKLVSSGIRK 713
>gi|226348536|gb|ACO50587.1| pol protein [Human immunodeficiency virus 1]
Length = 739
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 373 YVDGAANRETKLGKAGYVTDRGRQKVIALTDTTNQKTELQAIHLALQ-----DSGLEVNI 427
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 428 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 474
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 475 GGNEQVDKLVSNGIR 489
>gi|222428652|gb|ACM50251.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIR 716
>gi|209156629|pdb|3DLK|A Chain A, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
Length = 556
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 442 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 496
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 497 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 543
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 544 GGNEQVDKL 552
>gi|167745057|pdb|3BGR|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 545 GGNEQVDKL 553
>gi|167745010|pdb|2ZE2|A Chain A, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 545 GGNEQVDKL 553
>gi|167745008|pdb|2ZD1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
Length = 557
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 498 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 545 GGNEQVDKL 553
>gi|119390049|pdb|2I5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 552
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|108860446|dbj|BAE95963.1| Pol [Human immunodeficiency virus 1]
Length = 1004
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 597 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 649
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + + KV L W+ H
Sbjct: 650 NIVTDSQYA-------------LGIIQAQPDKSDSEIVNLIIEKLIEKDKVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 697 GIGGNEQVDKLVSNGIR 713
>gi|42592288|emb|CAF29005.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 563
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 421 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELHAIHLALQDSGL-EV 473
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 474 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLAWVPAHK 520
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 521 GIGGNEQVDKLVSAGIR 537
>gi|83026786|gb|ABB96424.1| pol protein [Human immunodeficiency virus 1]
gi|312601901|gb|ADQ92507.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|13786913|pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|4389176|pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
gi|4389179|pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
gi|4389182|pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
gi|4389185|pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|328857106|gb|EGG06224.1| hypothetical protein MELLADRAFT_43586 [Melampsora larici-populina
98AG31]
Length = 73
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 92 NGWKTSDKKTVKNIDLWM------KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
N WKTS K V+N DL + ++ L ++KGH+G N++ D++AR A
Sbjct: 3 NNWKTSAGKPVENQDLINSIRLLLFKRDQIHRNGAQLIYVKGHSGLLGNDQADKLARLGA 62
Query: 146 VS 147
Sbjct: 63 SK 64
>gi|325637327|gb|ADZ34902.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|306416238|gb|ADM86966.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 441 YVDGAASRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + + ++ + E + K+ L W+ H
Sbjct: 481 AIYLALQDSGSEVNIVTDSQYALRIIQAQPDRSESEIVNQIIEELIKKEKIYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 541 EIGGNEQVDKLVSSGIRK 558
>gi|289187197|gb|ADC92178.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELKAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984464|gb|ACU46304.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|110815951|sp|Q76634|POL_HV2UC RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1471
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A++ +V +
Sbjct: 1051 YTDGSCNRASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALQ-----DSGPQVNI 1105
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 1106 IVDSQYVMGIVAGQPTETE-------------SPLVNQIIEEMIKKEAIYVGWVPAHRGL 1152
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 1153 GGNQEVDHLVSQGIRQ 1168
>gi|56609242|gb|AAW03203.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESGIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
N++VD++ N
Sbjct: 698 GGNKQVDKLVSNGIR 712
>gi|312601970|gb|ADQ92541.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|330919512|ref|XP_003298645.1| hypothetical protein PTT_09418 [Pyrenophora teres f. teres 0-1]
gi|311328058|gb|EFQ93259.1| hypothetical protein PTT_09418 [Pyrenophora teres f. teres 0-1]
Length = 362
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 46/149 (30%), Gaps = 12/149 (8%)
Query: 9 VHAYTDGA-CSGNPGPG-----------GWGVLLRYKGKEKIISGGEKETTNNRMELMAA 56
+ +TDGA CS G + LR G S + E + L A
Sbjct: 82 ITYWTDGAYCSKGSNKGVMGAGVVGVSGPFRYALRQNGGRYTGSSNDAELLAISLALKHA 141
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ V +YTDS + + QQ G + +
Sbjct: 142 KSQVQEGAEFRLVRIYTDSQRILNSLNDSTPSAQQLGPMIPGEMLALEVLFDHTEWLHRL 201
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAA 145
+L W+K H + NE D +A A
Sbjct: 202 GISTELVWVKSHHASNGNEAADALATLAI 230
>gi|306477965|gb|ADM89357.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306477673|gb|ADM89211.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|299802366|gb|ADJ52024.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|288187732|gb|ADC42357.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|255984532|gb|ACU46338.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKXGRAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|112497832|gb|ABI20240.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VB++
Sbjct: 698 GGNEQVBKLVSAGIRK 713
>gi|49574220|gb|AAT66784.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLGVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|325637343|gb|ADZ34916.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|325636228|gb|ADZ33978.1| pol protein [Human immunodeficiency virus 1]
Length = 925
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKDKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|312601864|gb|ADQ92489.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306477499|gb|ADM89124.1| pol protein [Human immunodeficiency virus 1]
gi|306477501|gb|ADM89125.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|305861997|gb|ADM72942.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVXI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 704 GGNEQIDKLVSNGIRK 719
>gi|289469844|gb|ADC96577.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKTGKAGYVTDRGRQKVVXLTDTTNQKTELXAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRRI 559
>gi|263200886|gb|ACY69997.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTETTNQQTELHAIHLALQDSG--AEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 653 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------RVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIRK 715
>gi|255984476|gb|ACU46310.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELXAIHLALQ-----DSGLEXNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQXQPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984210|gb|ACU46177.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAAXRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSEXELVSQIIEQLIQKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|238635723|gb|ACR52935.1| pol protein [Human immunodeficiency virus 1]
gi|238635732|gb|ACR52943.1| pol protein [Human immunodeficiency virus 1]
gi|238635756|gb|ACR52964.1| pol protein [Human immunodeficiency virus 1]
gi|238635765|gb|ACR52972.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANKETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|164415864|gb|AAU14931.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRDTKLGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SGLVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|74052549|gb|AAZ95228.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGM 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|56681249|gb|AAW21259.1| pol protein [Simian immunodeficiency virus]
Length = 1015
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + K ++TTN + EL A + AL KV +
Sbjct: 600 YVDGAAHRESKEGKAGYVTATG---KEHVIKLEKTTNQKAELEAVLLALKDSGP--KVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV+ + N + ++ V L W+ H G
Sbjct: 655 VTDSQYVYGILAG-------------SPTETDNKIIEDIIQLLLSKEAVYLAWLPAHKGI 701
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 702 GGNEQVDKLVSQGIRKI 718
>gi|46254437|gb|AAS86188.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRDTKIGKAGYVTDRGKQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIRKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 697 GGNEQIDKLVSTGIR 711
>gi|13891880|gb|AAG50319.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|325635233|gb|ADZ33125.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|312601966|gb|ADQ92539.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306477823|gb|ADM89286.1| pol protein [Human immunodeficiency virus 1]
gi|306477825|gb|ADM89287.1| pol protein [Human immunodeficiency virus 1]
gi|306477827|gb|ADM89288.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|306477509|gb|ADM89129.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|306477503|gb|ADM89126.1| pol protein [Human immunodeficiency virus 1]
gi|306477505|gb|ADM89127.1| pol protein [Human immunodeficiency virus 1]
gi|306477507|gb|ADM89128.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|259122672|gb|ACV92638.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y BGA + G G+ + +G +K++S E T N+ + AI +V
Sbjct: 595 YVBGAANRETKLGKAGY---VTDRGXQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K V+ KV L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDKSESEVVNQIIEKLVEKD-------------KVYLSWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 695 GIGGNEQVDKLVSSGIRK 712
>gi|289187352|gb|ADC92254.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGV 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187333|gb|ADC92245.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYXTDKGRQKVVTLHDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187290|gb|ADC92224.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE +D++
Sbjct: 642 GGNEXIDKLVSAGIRK 657
>gi|255984494|gb|ACU46319.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A J +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVS---LTDTTNQKTELHAI--XJALQDSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEXLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984242|gb|ACU46193.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRDTKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|229661922|gb|ACQ84376.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRENKLGNAGYVTDRGRQKVVPLTDTTNQKAELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIIKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|71907016|ref|YP_284603.1| ribonuclease H [Dechloromonas aromatica RCB]
gi|71846637|gb|AAZ46133.1| Ribonuclease H [Dechloromonas aromatica RCB]
Length = 216
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 20/140 (14%)
Query: 10 HAYTDGACSG-NPGPGGWGVLLR-YKGKEKIISGGEKETTNNRMELMAAIKALT--ALKY 65
HA+ DGA NPG G G LL+ G+ IS E TNN E A + L
Sbjct: 7 HAWFDGATKHTNPGIRGVGGLLKGPAGERIEISEDIGEGTNNEAEYAALMAVLDAAVAAK 66
Query: 66 PCKVLLYTDSSYVHKGFS-QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+++Y DS V K + +W+ + + + KV L W
Sbjct: 67 VQDLIVYGDSQLVIKQVNGEWLINAKGLVPMCKTVRRLMAQIP-----------KVSLAW 115
Query: 125 IKGHAGNQENEKVDRIARNA 144
I +EN + D +++ A
Sbjct: 116 IP----REENTEADALSKKA 131
>gi|4139434|pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 543 GGNQQVDKLVSAGIRK 558
>gi|325637304|gb|ADZ34882.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|306478355|gb|ADM89552.1| pol protein [Human immunodeficiency virus 1]
Length = 463
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 56 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 110
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 111 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKXKVYLAWVPAHKGI 157
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 158 GGNEQVDKLVSNGIRK 173
>gi|299802362|gb|ADJ52022.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 698 GGNKQVDKLVSAGIRK 713
>gi|289187228|gb|ADC92193.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVT---LTDTTNQKTELQAILLALQDSGVEANI-- 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|288899140|gb|ADC67102.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLADTTNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]
Length = 321
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARN 143
V L W+ H G +ENE D+IA+
Sbjct: 154 VHLIWVPAHYGIEENEHADQIAKQ 177
>gi|262272880|gb|ACY40653.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + TTN + EL A + AL +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIIK---LEGTTNQKAELEAVLLALKESGKQANI-- 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYVLGIIS-------------ATPDQSDSPLVQKIIEEMTKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRI 140
NE +D++
Sbjct: 694 GGNEDIDKL 702
>gi|256011142|gb|ACU55427.1| pol protein [Human immunodeficiency virus 1]
Length = 944
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 537 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQXTELQAINLALQ-----DSGLEVNI 591
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 592 VTDSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKEKVYLAWVPAHKGI 638
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 639 GGNEQVDKLVSSGIR 653
>gi|226348572|gb|ACO50605.1| pol protein [Human immunodeficiency virus 1]
Length = 360
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 18 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 72
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 73 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYMAWVPAHKGI 119
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 120 GGNEQVDKLVSTGIRK 135
>gi|187932911|ref|YP_001884948.1| ribonuclease HI [Clostridium botulinum B str. Eklund 17B]
gi|187721064|gb|ACD22285.1| ribonuclease HI [Clostridium botulinum B str. Eklund 17B]
Length = 319
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 1 MDSKHLRE-VHAYTDGACSGNPGPGGWGVL------LRYKGKEKIISGGEKETTNNRMEL 53
+D K+ + +H Y DG+ + +GV+ + Y S EL
Sbjct: 66 LDGKYPEDCLHIYVDGSYNIGTSQYSYGVVAVKDNVVEYIDSGIGESNPTNNIRQIAGEL 125
Query: 54 MAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113
AIK + + + Y + ++ K ++ +
Sbjct: 126 KGAIKGVEYALSCGEKKVVIFHDYAGICYHATGAWERKEASSKEYYKRMQEL-------- 177
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
++ +V + H G+ NE D + A +K+
Sbjct: 178 MNSGIEVIFVKVDSHTGDFFNELADEKCKEALDIKSDKV 216
>gi|49574230|gb|AAT66788.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRRKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|66864682|gb|AAY57410.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 830
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 697 GGNEQIDKLVSAGIRK 712
>gi|328834004|gb|AEB52462.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN + EL A AL +V
Sbjct: 594 YVDGAANRETKLGKSGY---VTDKGRQKVVSLTE--TTNQKAELHAIYLALQDSGL--EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|325637311|gb|ADZ34888.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|325637272|gb|ADZ34854.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|325635550|gb|ADZ33393.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|325635238|gb|ADZ33129.1| pol protein [Human immunodeficiency virus 1]
gi|325635255|gb|ADZ33143.1| pol protein [Human immunodeficiency virus 1]
gi|325635279|gb|ADZ33163.1| pol protein [Human immunodeficiency virus 1]
gi|325635298|gb|ADZ33179.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|288188470|gb|ADC42709.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|288187765|gb|ADC42373.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|260179784|gb|ACX34558.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +G++K++S + ++ + +V
Sbjct: 110 YVDGAANRETKVGKAGYA---TNRGRQKVVSLADTTNQKTELQAINL----ALQDSGLEV 162
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TD Y G + ++ + + + KV L W+ H
Sbjct: 163 NIVTDPQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 209
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 210 GIGGNEQVDKLVSAGIRK 227
>gi|256011254|gb|ACU55483.1| pol protein [Human immunodeficiency virus 1]
Length = 992
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 585 YVDGAANRETKLGKAGYVTDKGRQKVVNLTDTTNQQSELQAVYLALQ-----DSELEVNI 639
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + + + KV L W+ H G
Sbjct: 640 VTDSQYV-------------LGIIQAQPDQSDSALVSQIIEQLIKKEKVYLAWVPAHKGI 686
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 687 GGNEQVDKLVSSGIRK 702
>gi|242242721|ref|ZP_04797166.1| ribonuclease H [Staphylococcus epidermidis W23144]
gi|242233857|gb|EES36169.1| ribonuclease H [Staphylococcus epidermidis W23144]
gi|319400793|gb|EFV89012.1| cell wall enzyme EbsB [Staphylococcus epidermidis FRI909]
Length = 131
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
+ D A GNPG ++++ + + E N+ E A + AL +
Sbjct: 3 KIHFDAATKGNPGRSACAIIIKENSQRYAFTHDLGEMDNHSAEWAAMLHALEHARELKVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LLYTDS + K + K + ++ V
Sbjct: 63 NALLYTDSKLIEDS---------MLQGKVKNAKFKVYFENIEILEQSFDLMFVKW----- 108
Query: 128 HAGNQENEKVDRIARN 143
++N++ +++A+
Sbjct: 109 -IPRKQNKEANQLAQQ 123
>gi|119351329|gb|ABL63499.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQRVVTLNDTTNQKTELHAIHLALQ-----DSGAEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|112351539|gb|ABI15322.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNKIIEGLIGKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|37677805|gb|AAQ97480.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGVRK 713
>gi|49574254|gb|AAT66799.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA G G + ++ + + A++ +V +
Sbjct: 441 FVDGAADRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13891876|gb|AAG50317.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306478269|gb|ADM89509.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289187366|gb|ADC92261.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGKQKVVALTDTTNQKTELQAIYLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|288187783|gb|ADC42380.1| pol protein [Human immunodeficiency virus 1]
Length = 667
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVNNKGRQKVVTLNDTTNQKIELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011612|gb|ACU55662.1| pol protein [Human immunodeficiency virus 1]
Length = 966
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 559 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDTTNQQTELQ 598
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 599 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESALVSQIIEQLINKEKVYLAWVPAHK 658
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 659 GIGGNEQVDKLVSSGIRK 676
>gi|222428409|gb|ACM50057.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSEPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|325766|gb|AAA43942.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 1061
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + + A++ +V +
Sbjct: 641 YTDGSCNRASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALQ-----DSGPQVNI 695
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 696 IVDSQYVMGIVAGQPTETE-------------SPLVNQIIEEMIKKEAIYVGWVPAHRGL 742
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 743 GGNQEVDHLVSQGIRQ 758
>gi|62956367|gb|AAY23502.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 694 GGNEQIDKLVSAGIRK 709
>gi|325637280|gb|ADZ34861.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|325635250|gb|ADZ33139.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|289187339|gb|ADC92248.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQXTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984008|gb|ACU46076.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|49574319|gb|AAT66829.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|13891888|gb|AAG50323.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|325635593|gb|ADZ33430.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|325635314|gb|ADZ33192.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVITLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|312601836|gb|ADQ92476.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRATKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNM 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLGWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 700 GGNEQVDKLVGAGIRK 715
>gi|291603769|gb|ADE20160.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|288899134|gb|ADC67099.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A+ ++ +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLAL-----XDSGSEINI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + A+ KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIAKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 699 GGNEQVDKLVSSGIR 713
>gi|288558541|dbj|BAI68327.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 192 YVDGAASRETKLGKAGY--------------------VTDRGRQKVLSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + KV L W+ H
Sbjct: 232 AIYLALQDSGSEVNIVTDSQYALGIIQARPDRSDSEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 292 GIGGNEQVDKL 302
>gi|255984586|gb|ACU46365.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEJVSQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 143 GGNEQVDXLVSAGIRK 158
>gi|255984256|gb|ACU46200.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+ S +TTN + EL A AL +V
Sbjct: 41 YVDGAANRETXLGKAGY---VTNRGRQKVXS--LTDTTNQKTELQAIYLALQDSGL--EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ N
Sbjct: 141 GIGGNEQVDKLVSNGIRK 158
>gi|226348728|gb|ACO50683.1| pol protein [Human immunodeficiency virus 1]
Length = 715
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTSNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 429 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|226348678|gb|ACO50658.1| pol protein [Human immunodeficiency virus 1]
Length = 459
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 79 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTSNQKTELQAIHLALQ-----DSGLEVNI 133
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 134 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 180
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 181 GGNEQVDKLVSAGIRK 196
>gi|226348656|gb|ACO50647.1| pol protein [Human immunodeficiency virus 1]
Length = 752
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 369 YVDGAANRESKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSELEVNI 423
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 424 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 470
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 471 GGNEQVDKLVSSGIRK 486
>gi|222428613|gb|ACM50220.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|134284813|gb|ABO69501.1| pol [Feline immunodeficiency virus]
Length = 1145
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G G K E E +N E A AL A ++
Sbjct: 607 YIDGGRKKGKKARAG------RWKNSKEWQIMEIEGSNQVAEAQALNMALKAGPEKMNII 660
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 661 --TDSQYVYNMI--------------RARPEPSSPLWKEIIEELQKKEKIFLDWVPGHKG 704
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 705 IPGNKEIDEL 714
>gi|13540173|gb|AAK29340.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ + +G++K+IS + ++ + T +V
Sbjct: 596 YVDGAANRDTKLGKAGY---VTDRGRQKVISITDTTNQKTELQAINL----TLQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+V ++ +
Sbjct: 696 GIGGNEQVHKLVSSGIRK 713
>gi|74315770|gb|ABA02493.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIRRI 714
>gi|312602028|gb|ADQ92568.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|306478009|gb|ADM89379.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477835|gb|ADM89292.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQQTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHRGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|255984738|gb|ACU46441.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGXQKVVXLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|212536822|ref|XP_002148567.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
gi|210070966|gb|EEA25056.1| reverse transcriptase, putative [Penicillium marneffei ATCC 18224]
Length = 2083
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG--------GEKETTNNRMELMA 55
K V YTDG+ G G G +++ K+ E + L
Sbjct: 1690 KENSRVLIYTDGS--GYQGYIGTSMVMPQFSKQVTQCIGTEDTSTVNAAEACGIKFALET 1747
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
++ + KV +++DS K +T + +
Sbjct: 1748 VLRFADDDERLKKVAIFSDSQPALKALRSPRMV---------SGQTYIRDCINLYQECIE 1798
Query: 116 AQHKVDLYWIKGHAGNQENE 135
V L+WI GH G NE
Sbjct: 1799 NDIDVVLHWIPGHEGVPGNE 1818
>gi|83722758|gb|ABC41653.1| pol protein [Feline immunodeficiency virus]
Length = 1135
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G G K E E +N E A AL A ++
Sbjct: 605 YIDGGRKKGKKARAG------RWKNSKEWQIMEIEGSNQVAEAQALNMALKAGPEKMNII 658
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + K+ L W+ GH G
Sbjct: 659 --TDSQYVYNMI--------------RARPEPSSPLWKEIIEELQKKEKIFLDWVPGHKG 702
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 703 IPGNKEIDEL 712
>gi|1899136|gb|AAC57016.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E TTN R EL A AL +V
Sbjct: 592 YVDGAANRETKLGKAGY---VTDRGRQKIVSLTE--TTNQRAELHAIYLALQDSGL--EV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + ++ L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEKLIGKERIYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 692 GIGRNEQVDKLVSSGIRK 709
>gi|86753493|gb|ABD14927.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 593 YVDGAANRETRLGKAGYVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGSEVNI 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + L W+ H G
Sbjct: 648 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERTYLSWVPAHKGI 694
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 695 GGNEQVDKLVSSGIRK 710
>gi|327458259|gb|AEA76569.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K ++G + T + +A +V
Sbjct: 441 YVDGAXNRETKLGKAGY-VTDRGRQKVVSLTGTTNQKTELQAIHLAL------QDSGXEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|326416696|gb|ADZ73201.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
ENE+VD++ +
Sbjct: 642 GENEQVDKLVSSGIRK 657
>gi|325635601|gb|ADZ33437.1| pol protein [Human immunodeficiency virus 1]
Length = 992
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 585 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 639
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 640 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 686
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 687 GGNEQVDKLVSSGIR 701
>gi|307176190|gb|EFN65847.1| hypothetical protein EAG_02388 [Camponotus floridanus]
Length = 220
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
++ + +K + N + + + + K+ L WI H G
Sbjct: 26 YNHENVIIFSDCQGVLKALKNNKLSVYHNRYIMEARELYWKIVTQFRIKIYLIWIPSHKG 85
Query: 131 NQENEKVDRIARNAA 145
NE D +A+ A
Sbjct: 86 FIGNEIADILAKQGA 100
>gi|306478023|gb|ADM89386.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AVYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|256010994|gb|ACU55353.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + ++ + + A++ +V +
Sbjct: 558 YVDGASNRETKXXKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 612
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + +V L W+ H G
Sbjct: 613 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIRKXRVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 660 GGNEQVDKLVSAGIRKI 676
>gi|256010921|gb|ACU55317.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+ D++
Sbjct: 698 GGNEQXDKLVSXGIRKI 714
>gi|255984772|gb|ACU46458.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGASNRETKLGKAGYVTNKGRQKVXTLTDTTNQKTELXAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAXPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|61102569|gb|AAX37711.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIR 136
>gi|61102661|gb|AAX37790.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 20 YVDGAANKETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 72
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 73 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 119
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 120 GIGGNEQVDKLVSSGIRK 137
>gi|328834498|gb|AEB52901.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ +DS Y G + ++ + E + +V L W+ H
Sbjct: 655 NIVSDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKERVYLTWVPAHK 701
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSTGIR 718
>gi|312601789|gb|ADQ92454.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|306478027|gb|ADM89388.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AVYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289187230|gb|ADC92194.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKIGRAGYVTNKGRQKVVTLADTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIR 656
>gi|256010909|gb|ACU55311.1| pol protein [Human immunodeficiency virus 1]
Length = 966
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 559 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 613
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 614 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 660
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 661 GGNEQVDKLVSTGVRK 676
>gi|256010829|gb|ACU55271.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|167651295|gb|ABZ91093.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL +
Sbjct: 592 YVDGAANKETKLGKAGYVTDKGRQKIIT---LTETTNQKAELQAIQLALQDSGLEANI-- 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|159039131|ref|YP_001538384.1| phosphoglycerate mutase [Salinispora arenicola CNS-205]
gi|157917966|gb|ABV99393.1| Phosphoglycerate mutase [Salinispora arenicola CNS-205]
Length = 402
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAI 57
R V DG GNPGP G+G ++R + S TNN E I
Sbjct: 3 PRVVVVEADGGSRGNPGPAGYGAVVRAPDTGEVLAERSAAIGTATNNVAEYRGLI 57
>gi|114801204|gb|ABI79809.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETRLGKAGYVTDRGRQKAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 701 GGNEQVDKLVSSGIK 715
>gi|22532293|gb|AAM97886.1|AF492624_2 pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + T N+ + AI +V +
Sbjct: 594 YVDGAANRETKVGKAGYVTDRGRQKVVT----LTETTNQKTELEAIHLALQDSGL-EVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 649 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 696 GGNEQVDKL 704
>gi|3193273|gb|AAD03326.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAASRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 1128 GGNEQVDKLVSTGIR 1142
>gi|7144662|gb|AAF37327.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 431 YVDGAANRETKLGKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 532
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 533 GGNEQVDKL 541
>gi|326416704|gb|ADZ73205.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------RVYLSWVPTHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 642 GGNEQVDKLVSSGIRK 657
>gi|306478051|gb|ADM89400.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AVYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|306477787|gb|ADM89268.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477777|gb|ADM89263.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289469882|gb|ADC96596.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + T ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDTSESEVVNQIIEQLIKKEKVYLXWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|289469842|gb|ADC96576.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETXJGKAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSXGIRK 558
>gi|289187378|gb|ADC92267.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|288187704|gb|ADC42343.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYITNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011138|gb|ACU55425.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 20/136 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 650 VTDSQYALGII--------------QAQPDKSESEJVSQIIEQLIKKEKVYLAWVPAHKG 695
Query: 131 NQENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 IGGNEQVDKLVSAGIR 711
>gi|256011006|gb|ACU55359.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQ-----DSGPEVNV 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKXYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|256010873|gb|ACU55293.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVTIADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|170778913|gb|ACB36856.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S + T N+ + AI +V +
Sbjct: 441 YVDGAANRET-KAGKAGYVTNRGRQKVVSLTD---TTNQKTELKAIHLALQDSGL-EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 543 GGNKQVDKLVSAGVRK 558
>gi|116518613|gb|ABJ99504.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 601 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 703 GGNEQIDKLVSAGIR 717
>gi|885633|gb|AAC55696.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|71794586|emb|CAI28827.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 1023 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIYLALQDSGQ-EV 1075
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 1076 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 1122
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 1123 GIGGNEQVDKLVSNGIR 1139
>gi|306477785|gb|ADM89267.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477467|gb|ADM89108.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSLIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|302393331|dbj|BAJ14386.1| pol protein [Simian immunodeficiency virus]
Length = 442
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 271 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 327
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 328 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 372
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 373 GGNQEVDHLVSQGIRQ 388
>gi|288899142|gb|ADC67103.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLDDTTNQKTELHAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011306|gb|ACU55509.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + ++ + +V
Sbjct: 607 YVDGAANRETKLGKAGY---VTDKGRQKVVSLTDTTNQKTELQAIYL----XLQDSGLEV 659
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K+ L W+ H
Sbjct: 660 NIITDSQYALGIIHAQPDRSE-------------SELVSQIIEELIKKEKIYLAWVPAHK 706
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 707 GIGGNEQVDKLVSAGIRK 724
>gi|256010968|gb|ACU55340.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSXADTTNQKTELQAIXLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVXAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 697 GGNEQVDKLVSAGIRK 712
>gi|255984188|gb|ACU46166.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRXTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSDSELVSQIIEQLINKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIR 656
>gi|238734120|gb|ACR55362.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN + EL A AL +V
Sbjct: 594 YVDGAANRETKLGKSGY---VTDKGRQKVVSLTE--TTNQKAELHAIYLALQDSGL--EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|306478275|gb|ADM89512.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGXIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NEKVD++
Sbjct: 543 GGNEKVDKL 551
>gi|260533664|gb|ACX45070.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + +K ++ KV L W+ H G
Sbjct: 650 VTDSQYALGVIQAQPDKSESELVNQIIEKLIEKD-------------KVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIR 711
>gi|256011294|gb|ACU55503.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSISDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 698 GGNEQIDKLVSNGIRK 713
>gi|255984392|gb|ACU46268.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTBRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVSF 148
NE VD++
Sbjct: 143 GGNEXVDKLVSAGXRKI 159
>gi|238734139|gb|ACR55379.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 612 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 666
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 667 VTDSQYAIGII-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 713
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 714 GGNEQVDKLVSTGIR 728
>gi|238734130|gb|ACR55371.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E TTN + EL A AL +V
Sbjct: 594 YVDGAANRETKLGKSGY---VTDKGRQKVVSLTE--TTNQKAELHAIYLALQDSGL--EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 694 GIGGNEQVDKLVSSGIRK 711
>gi|222428509|gb|ACM50137.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIYLALQ-----DSGIEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIRK 713
>gi|312601911|gb|ADQ92512.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|306477779|gb|ADM89264.1| pol protein [Human immunodeficiency virus 1]
gi|306477781|gb|ADM89265.1| pol protein [Human immunodeficiency virus 1]
gi|306477783|gb|ADM89266.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|302393306|dbj|BAJ14368.1| pol protein [Simian immunodeficiency virus]
Length = 441
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 270 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 326
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 327 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 371
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 372 GGNQEVDHLVSQGIRQ 387
>gi|301503536|gb|ADK75268.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTDRGRQKAVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 703 GGNEQVDKLVSTGIRK 718
>gi|289469856|gb|ADC96583.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKXGKAGYVTDKGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSXGIR 557
>gi|256011112|gb|ACU55412.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAXRETKLGKAGYVTNKGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 698 GGNXQVDKLVSAGIRK 713
>gi|255984774|gb|ACU46459.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 143 GGNEQVDKL 151
>gi|255983954|gb|ACU46049.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRXTKXGXAGYVTDRGRQKVVPLXDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEXXYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|2281654|gb|AAB64164.1| polymerase polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 698 GGNEQIDKLVSNGIRK 713
>gi|327458313|gb|AEA76596.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANREXKLGKAGYVTDKGRQKVVNLTDTTNQQTELQAVYLALQ-----DSELEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV G + + + + + KV L W+ H G
Sbjct: 496 VTDSQYV-------------LGIIQAQPDQSDSALVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477497|gb|ADM89123.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKJGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|256011086|gb|ACU55399.1| pol protein [Human immunodeficiency virus 1]
Length = 967
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 560 YVDGAXNRZTKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 615 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 661
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 662 GGNEQVDKLVSNGIRK 677
>gi|255984712|gb|ACU46428.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|13891878|gb|AAG50318.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|16118292|gb|AAL12668.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGPEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGVRK 714
>gi|306477775|gb|ADM89262.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289187298|gb|ADC92228.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTJTDTTNQKTELQAIXLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 642 GGNEQXDKLVSAGIRK 657
>gi|288187560|gb|ADC42274.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLADTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|257146455|emb|CAT00600.1| gag/pol precursor [HIV-1 M_02CD.LBTB084]
Length = 1428
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1021 YVDGAANRESKLGKAGYVTDRGRQKIISLTDTTNQKTELHAIYLALQ-----DSGSEVNI 1075
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 1076 VTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE-------------KVYLSWVPAHKGI 1122
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 1123 GGNEQIDKLVSSGIRK 1138
>gi|256011278|gb|ACU55495.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|255984356|gb|ACU46250.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTNKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|195409346|gb|ACF95922.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL + +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTETTNQKAELHAIYLALQ--ESGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KIYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 697 GGNEQIDKLVSSGIRK 712
>gi|86560215|gb|ABD04272.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKSELQAIYIALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|37677795|gb|AAQ97471.1| Pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 590 YVDGAANRETKLGRAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 692 GGNEQVDKLVSNGIRK 707
>gi|37677785|gb|AAQ97462.1| Pol protein [Human immunodeficiency virus 1]
Length = 997
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 590 YVDGAANRETKLGRAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 644
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 645 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 691
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 692 GGNEQVDKLVSNGIRK 707
>gi|4205046|gb|AAD10920.1| pol polyprotein [Human immunodeficiency virus 1]
gi|4205073|gb|AAD10944.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ V R + K +S + T + +A +V
Sbjct: 505 YVDGAANRETTLGKAGY-VTDRGRQKVVSLSDTTNQKTELQAIHLAL------QDSGLEV 557
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 558 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 604
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 605 GIGGNEQVDKLVSAGIRK 622
>gi|312601805|gb|ADQ92462.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|306477793|gb|ADM89271.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYV---TNKGRQKAVTLTDTTNQKTELQAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477789|gb|ADM89269.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A + AL +V +
Sbjct: 441 YVDGAANRETKLGKAGYV---TNKGRQKAVTLTDTTNQKTELQAILLALQDSGL--EVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|256011546|gb|ACU55629.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIFLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSXGIR 712
>gi|222159573|gb|ACM47290.1| pol protein [Human immunodeficiency virus 1]
Length = 434
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K+I+ E ++ + +V
Sbjct: 84 YVDGAANRETKLGKAGY---VTDRGKQKVITLTETTNQKTELQAINL----ALQDSGSEV 136
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + +V L W+ H
Sbjct: 137 NIITDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKERVYLSWVPAHK 183
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 184 GIGGNEQVDKLVSSGIRK 201
>gi|110815939|sp|O41798|POL_HV19N RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL + +V +
Sbjct: 1028 YVDGAANRETKLGKAGHVTDKGKQKIIT---LTETTNQKAELHAIQLALQDSRP--EVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDRSGSELVNQIIEQLIKKEKVYLSWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 1130 GGNEQVDKLVSSGIRK 1145
>gi|13891890|gb|AAG50324.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|66864692|gb|AAY57419.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|325193999|emb|CCA28121.1| hypothetical protein SS1G_12417 [Albugo laibachii Nc14]
Length = 691
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII----SGGEKETTNNRMELMAA 56
M S V AY+DG+ G P WG +L +G+ G + + A
Sbjct: 394 MSSLPSDTVLAYSDGSSCG-PARSAWGYVLYKEGQLIGQGAGAMPGAEVYDAEILGAQKA 452
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
++A + + D+S V + + K Q +
Sbjct: 453 LEAAILKAGNSPIKVLLDNSAVVRALQRGRSKSSQAIVDK-------------YIAQTRV 499
Query: 117 QHKVDLYWIKGHAGNQENE 135
V+ WI GH G NE
Sbjct: 500 HPAVETRWIPGHTGITGNE 518
>gi|306478201|gb|ADM89475.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|306477917|gb|ADM89333.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELEAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSNIIEQLIKKEKVYMAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477791|gb|ADM89270.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKDKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|299508001|dbj|BAJ09938.1| pol protein [Human immunodeficiency virus 2]
Length = 1041
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 621 YTDGSCNRVSKEGKAGYITDRGRDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 675
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + V + W+ H G
Sbjct: 676 IVDSQYVMGIIAGQPTETE-------------SSIVNRIIEEMIKKEAVYVGWVPAHKGL 722
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 723 GGNQEVDHLVSQGIRQ 738
>gi|288187830|gb|ADC42402.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSEAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIR 656
>gi|288187519|gb|ADC42254.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKIYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011524|gb|ACU55618.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETXLGKAGY--------------------XTDRGRQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + K+ L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGILQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRK 713
>gi|256010903|gb|ACU55308.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKIVSJTDTTNQKTELQAINLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYAJGII-------------QAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIRK 717
>gi|255984888|gb|ACU46516.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---ITNKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + V L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|255984276|gb|ACU46210.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|255984042|gb|ACU46093.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIR 656
>gi|306477773|gb|ADM89261.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289469868|gb|ADC96589.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESDLVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|222428256|gb|ACM49935.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|221481155|gb|EEE19560.1| ribonuclease H, putative [Toxoplasma gondii GT1]
Length = 657
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
++ IKGH+GN NEK D++A A
Sbjct: 620 IEFVLIKGHSGNYGNEKADQLACLGAT 646
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 3 SKHLRE----VHAYTDGACSGNPG----PGGWGVLLRYKGKEKIISGGEKETTNNRMELM 54
+R+ ++ YTDGAC N G GV + + N+ +
Sbjct: 348 PARMRDDARILYIYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLTGQPQTNQRAEL 407
Query: 55 AAI 57
AI
Sbjct: 408 QAI 410
>gi|167651315|gb|ABZ91111.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 23/150 (15%)
Query: 1 MDSKHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAI 57
++ + ++ V Y DGA + G G+ + +G++K++S E TTN + EL A
Sbjct: 580 LEKEPIQGVETFYVDGAANRETKLGKAGY---VTDRGRQKVVSLTE--TTNQKAELQAIQ 634
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
AL + TDS Y K + + + + +
Sbjct: 635 LALQDSGSEANI--VTDSQYALGIIQGQPDKSE-------------SEVVNQIIEQLILK 679
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 680 ERVYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|212382776|gb|ACJ25696.1| pol protein [Human immunodeficiency virus 1]
Length = 715
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 41 GGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG-----------------FS 83
G + + + ++ + Y D YV +
Sbjct: 303 GWKGSPAIFQASMTRILEPFRTQNPEIVIYQYMDDLYVGSDLEIGQHRARIEELKGPEVN 362
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
G + ++ + + + +V L W+ H G NE+VD++ +
Sbjct: 363 IVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGIGGNEQVDKLVSS 422
Query: 144 AAVS 147
Sbjct: 423 GIRK 426
>gi|237844543|ref|XP_002371569.1| ribonuclease H, putative [Toxoplasma gondii ME49]
gi|211969233|gb|EEB04429.1| ribonuclease H, putative [Toxoplasma gondii ME49]
Length = 657
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
++ IKGH+GN NEK D++A A
Sbjct: 620 IEFVLIKGHSGNYGNEKADQLACLGAT 646
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 3 SKHLRE----VHAYTDGACSGNPG----PGGWGVLLRYKGKEKIISGGEKETTNNRMELM 54
+R+ ++ YTDGAC N G GV + + N+ +
Sbjct: 348 PARMRDDARILYIYTDGACRSNGRGKEAKAGVGVFFGDGDPRNVSRRLTGQPQTNQRAEL 407
Query: 55 AAI 57
AI
Sbjct: 408 QAI 410
>gi|125661206|gb|ABN49551.1| pol protein [Human immunodeficiency virus 1]
gi|125661216|gb|ABN49560.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTNRGKQKVISLTDTTNQKTELHAIHLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDESESELVNQIIEQLIKKDKVYLTWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|66473531|gb|AAY46411.1| pol protein [Human immunodeficiency virus 1]
gi|312602043|gb|ADQ92575.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETRLGRAGYVTDRGRQKVIPLTDTTNQKTELQAINLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 697 GGNEQVDKLVSNGIRK 712
>gi|55740247|gb|AAV63819.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKIGKAGYVTDRGRQKVVPLTATTNQKTELQAVYLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + Q + + + + +V L W+ H G
Sbjct: 650 VTDSQYVLGIIQAQPDQSQ-------------SELVSQIIEQLIKKERVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 697 GGNAQVDKLVSQGIRK 712
>gi|37221524|gb|AAQ89890.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + T N+ + AI +V
Sbjct: 540 YVDGAANKETKLGRAGY---VTNRGRQKVISLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|85700664|gb|ABC74766.1| pol protein [Human immunodeficiency virus 1]
Length = 719
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 41 GGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG-----------------FS 83
G + + + ++ + Y D YV +
Sbjct: 306 GWKGSPAIFQASMTRILEPFRTQNPEIVIYQYMDDLYVGSDLEIGQHRARIEELKGPEVN 365
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
G + ++ + + + +V L W+ H G NE+VD++ +
Sbjct: 366 IVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGIGGNEQVDKLVSS 425
Query: 144 AAVS 147
Sbjct: 426 GIRK 429
>gi|306478339|gb|ADM89544.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + +K KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSESELVNQIIEHLIKKE-------------KVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306478011|gb|ADM89380.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306477923|gb|ADM89336.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|306416200|gb|ADM86947.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S E T N+ + AI +V
Sbjct: 441 YVDGAXNRETKLGKAGY---VTNKGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + +V L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIKKERVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 541 GIGGNEQVDKLVSSGIRK 558
>gi|289469802|gb|ADC96556.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGRAGY---VTDKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 541 GIGGNEKVDKLVSSGIRK 558
>gi|269986096|gb|ACZ57349.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|295402276|ref|ZP_06812232.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111501|ref|YP_003989817.1| hypothetical protein GY4MC1_2505 [Geobacillus sp. Y4.1MC1]
gi|294975669|gb|EFG51291.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216602|gb|ADP75206.1| hypothetical protein GY4MC1_2505 [Geobacillus sp. Y4.1MC1]
Length = 221
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 5/144 (3%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+++ +V AY DG G GV++ YK A A
Sbjct: 67 METEP-HDVIAYFDGGFDRGTLQAGVGVVIYYKQNNGQYRLRANRQLEALKSNNEAEYAA 125
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
L V + Q +G + E ++ +
Sbjct: 126 FWFLMQTLEELGVHHLPVIFRGDSHVVLKQLSGDWP--CFEDDYHAWLDRIEEKISELGI 183
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ D++AR A
Sbjct: 184 QPIYEP--ISRKQNKEADQLARQA 205
>gi|134284744|gb|ABO69442.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 608 YIDGGRKKGQKARAGW------WKNSTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 705
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 706 IPGNKEIDEL 715
>gi|37682431|gb|AAQ98128.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI+ P +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTE---TTNQKTELHAIQLALQDSGP-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDRSDSEIVNQIIEKLIEKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIRK 713
>gi|8885968|gb|AAF80320.1|AF156842_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1030
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 624 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 676
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 677 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 723
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 724 GIGGNEQIDKLVSAGIRK 741
>gi|256010771|gb|ACU55242.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNXGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|255984446|gb|ACU46295.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|255984314|gb|ACU46229.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|8885964|gb|AAF80318.1|AF156840_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1004
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 617 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 669
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 670 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 716
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 717 GIGGNEQIDKLVSAGIRK 734
>gi|306478075|gb|ADM89412.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|256010897|gb|ACU55305.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|255984892|gb|ACU46518.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|194763072|ref|XP_001963658.1| GF20175 [Drosophila ananassae]
gi|190629317|gb|EDV44734.1| GF20175 [Drosophila ananassae]
Length = 138
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ QH + L W+ GH ++ N D ++R
Sbjct: 1 MAEQHDIYLIWVPGHRDHEGNCAADELSRAG 31
>gi|13891886|gb|AAG50322.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|13891882|gb|AAG50320.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|13891884|gb|AAG50321.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|317471619|ref|ZP_07930963.1| ribonuclease HI [Anaerostipes sp. 3_2_56FAA]
gi|316900934|gb|EFV22904.1| ribonuclease HI [Anaerostipes sp. 3_2_56FAA]
Length = 149
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ DS Y + + K + + +V +KGH
Sbjct: 49 MQYAVDSGYQKLAIYYDYEGIAKWCTGEWAAKKEGTKAYRSFYDSVKDRLQVRFVKVKGH 108
Query: 129 AGNQENEKVDRIARNA 144
+ ++ N+K D +A++A
Sbjct: 109 SNDEYNDKADMLAKSA 124
>gi|312844572|gb|ADR03144.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I +ETTN + EL A + AL +
Sbjct: 593 YVDGAANRETKLGKAGYVTDRGRQKIIK---LEETTNQKAELEAVLLALKESGEQANI-- 647
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + KV L W+ H G
Sbjct: 648 VTDSQYVLGIIS-------------ATPDQSDSPLVQKIIEEMTKKEKVYLSWVPAHKGI 694
Query: 132 QENEKVDRI 140
NE +D++
Sbjct: 695 GGNENIDKL 703
>gi|306478087|gb|ADM89418.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|306477739|gb|ADM89244.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + +K KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSESELVNQIIEHLIKKE-------------KVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|306477699|gb|ADM89224.1| pol protein [Human immunodeficiency virus 1]
Length = 827
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 420 YVDGAANRESKKGKAGYVTDRGRQKAVPLTETTNQKAELQAIQLALQ-----DSGSEVNI 474
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS G + ++ + + + K+ L W+ H G
Sbjct: 475 VTDSQCA-------------LGVIQAQPDKSESELVNQIIEQLIKKEKIYLSWVPAHKGI 521
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 522 GGNEQVDRLVSTGIRK 537
>gi|288187592|gb|ADC42289.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|134284778|gb|ABO69471.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW + E E +N E A AL A ++
Sbjct: 608 YIDGGRKKGQKAKAGW------WKNNQEWQIMEIEGSNQIAEAQALNMALKAGPEKMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH G
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPIDPLWKEIIEELQRKEAIFIDWVPGHKG 705
Query: 131 NQENEKVDRI 140
N+++D I
Sbjct: 706 IPGNKEIDEI 715
>gi|83722746|gb|ABC41647.1| pol protein [Feline immunodeficiency virus]
Length = 1136
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 606 YIDGGRKKGQKARAGW------WKNSTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 659
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 660 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 703
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 704 IPGNKEIDEL 713
>gi|8885970|gb|AAF80321.1|AF156843_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1014
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 607 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 659
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 660 NIVTDSQYA-------------LGIIQAHPDKSESDLVNQIIEQLIKKEKVYLAWVPAHK 706
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 707 GIGGNEQIDKLVSAGIRK 724
>gi|8885966|gb|AAF80319.1|AF156841_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1034
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 628 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 680
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 681 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 727
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 728 GIGGNEQIDKLVSAGIRK 745
>gi|289469818|gb|ADC96564.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGVRK 558
>gi|222612692|gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
L V TDGA S N GGWG ++R + + +G +
Sbjct: 1432 RRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 1491
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A+K + + S + S ++ Q+ +++ + V
Sbjct: 1492 AIKTASERGM---SRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVS 1548
Query: 122 LYWIKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 1549 Y------SPRSCNKVAHELA 1562
>gi|108706113|gb|ABF93908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L + E++ + +N E A +
Sbjct: 450 MPEEKMEYWTVHFDGSKRLTGT--GAGVVLIFPTGERLSYVLWIHFSASHNVAEYEALLH 507
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 508 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLELT- 564
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 565 -----------HVLRHNNEAADRLAN 579
>gi|34333792|gb|AAQ64619.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSKIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|25807926|gb|AAN74514.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQRVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|321472777|gb|EFX83746.1| hypothetical protein DAPPUDRAFT_239865 [Daphnia pulex]
Length = 49
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
V ++K H G + NE D +A+ A ++K
Sbjct: 6 VPENYVKAHKGIEGNEYADMLAKAGAANYK 35
>gi|312601955|gb|ADQ92534.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 606 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 661 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 708 GGNEQIDKLVSAGIRK 723
>gi|306478255|gb|ADM89502.1| pol protein [Human immunodeficiency virus 1]
Length = 809
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 402 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 456
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 457 VTDSQYALGIIQAQPDQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 503
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 504 GGNEQVDKLVSNGIRK 519
>gi|256011426|gb|ACU55569.1| pol protein [Human immunodeficiency virus 1]
Length = 990
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 583 YVDGAANKETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 637
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 638 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHKGI 684
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 685 GGNEQVDKLVSAGIR 699
>gi|159031791|dbj|BAF91867.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 404 YVDGAANRETKLGKAGYVTNRGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 458
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 459 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 505
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 506 GGNEQVDKL 514
>gi|8885962|gb|AAF80317.1|AF156839_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1023
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 628 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 680
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 681 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 727
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 728 GIGGNEQIDKLVSAGIRK 745
>gi|256011766|gb|ACU55739.1| pol protein [Human immunodeficiency virus 1]
Length = 923
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKXGYVTDRGRQKVVSLTDTTNQKTELQAICLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|170676555|gb|ACB30421.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIILAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|116518623|gb|ABJ99513.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANKETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSELEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAHPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|86560205|gb|ABD04263.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|87241451|gb|ABD33309.1| Ribonuclease H [Medicago truncatula]
Length = 1378
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 15/149 (10%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKA 59
S R + DG C NP G+G L R + G TT + EL A +
Sbjct: 1176 TSPTRRFIKLNVDGCCMDNPRSAGYGGLFRDVDGNWLGGFYGSLGFTTKMKAELYAICQG 1235
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L + ++ Y+ + + + + +
Sbjct: 1236 LITAWDFGYRNILVETDYLEAIKHIEEANIEHDAYGSLVADIRSLMQRNWSLNLD----- 1290
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSF 148
H+ ++N D ++R A
Sbjct: 1291 --------HSLKEDNACADILSRIGAEQH 1311
>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
Length = 1234
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
K+ + WI GH+G NE D+ A+ A
Sbjct: 1040 KIKIMWIPGHSGIIGNELADQAAKLA 1065
>gi|255984026|gb|ACU46085.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIXKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|222428657|gb|ACM50255.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRESKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y Q TS+ + V I + E KV L W+ H G
Sbjct: 655 VTDSQYA--------LGIIQAQPDTSESELVNQIIEQLINKE-----KVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIR 716
>gi|288188472|gb|ADC42710.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|288187822|gb|ADC42398.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I +TTN R EL A AL +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVIT---LTDTTNQRTELQAIHLALQDSGV--EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|288187614|gb|ADC42300.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|256011782|gb|ACU55747.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGKQKVISLADTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVXXAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256011304|gb|ACU55508.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ K K +TTN + EL A + AL +V
Sbjct: 604 YVDGAANRETKLGKAGY-----XTNKGKQKVVSLTDTTNQKTELQAILLALQDSGL--EV 656
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 657 NIVTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLINKEKVYLAWVPAHK 703
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 704 GIGGNEQVDKLVSTGIR 720
>gi|255984740|gb|ACU46442.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIR 157
>gi|240949194|ref|ZP_04753538.1| ribonuclease H [Actinobacillus minor NM305]
gi|240296310|gb|EER46954.1| ribonuclease H [Actinobacillus minor NM305]
gi|255669559|gb|ACT22521.2| ribonuclease HI [Actinobacillus minor]
Length = 188
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 6 LREVHAYTDGACSGNPGPGGWGV-----LLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+R V YTDG+CS + G G + S G + NNRMEL+A ++ L
Sbjct: 1 MRNVQLYTDGSCSSHLKGKGLGGIGYILYFPDNQTLEQGSKGYYLSNNNRMELIAVLEGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+LK P V + TDS +V G + + + DLW K QHK+
Sbjct: 61 KSLKKPHNVKIITDSQFVEAGIQKLLSSLEL---------PKSEQDLWRKLSLLIQQHKI 111
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
H + E+ ++A A
Sbjct: 112 SCSRSSSH---PQIEQCHKLANKA 132
>gi|74273422|gb|ABA01408.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325089740|gb|EGC43050.1| WD40 repeat-containing protein [Ajellomyces capsulatus H88]
Length = 2052
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 95 KTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
S ++ V I +K +E+ H V L + GH N N+ D +A+ AA
Sbjct: 1879 NKSGQQIVHAILRVVKDLESQNIH-VRLQCVPGHCNNPGNDTADFLAKEAAD 1929
>gi|302393432|dbj|BAJ14455.1| pol protein [Simian immunodeficiency virus]
Length = 456
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 271 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 327
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 328 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 372
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 373 GGNQEVDHLVSQGIRQ 388
>gi|289469878|gb|ADC96594.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|288187527|gb|ADC42258.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTDKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011312|gb|ACU55512.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDXGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|256010929|gb|ACU55321.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKJGKAGYVTDRGRQKVVSLTBTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSHIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|255984946|gb|ACU46545.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGXIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|255984778|gb|ACU46461.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVXLADTTNQKTELQAIQLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + V L W+ H G
Sbjct: 96 VTDSQYAJGIIQAQPDXSE-------------SELVXQIIEQLIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|212674676|gb|ACJ37096.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y BGA + G G + ++ + + A++ +V +
Sbjct: 597 YVBGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQATPDKSESXLVSQIIEXLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIRKI 715
>gi|321476812|gb|EFX87772.1| hypothetical protein DAPPUDRAFT_96634 [Daphnia pulex]
Length = 291
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNR--MELMAAIKALTAL 63
V YTDG C P G GV + + + ++ E+ AAI+A+
Sbjct: 144 VRVYTDGICLQKGHPDAQAGIGVWFGRNHQLNLSEPLDDRDDTSKSAAEVRAAIEAIKIA 203
Query: 64 KYP--CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
K ++ ++T+S Y+ I W NGW+ + +K+ LW + + + V+
Sbjct: 204 KAWGIGRMAIHTESKYLRNVIENLIFYWMDNGWRKTTGNLIKHRKLWRELLFTLEEMDVE 263
Query: 122 LYWIKGH-AGNQENEKVDRIARNAAVSF 148
++KG + + R+AR A +
Sbjct: 264 WKYLKGPGIYDDGSSAAKRLAREGAERY 291
>gi|289187278|gb|ADC92218.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIXLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSXGIRK 657
>gi|255984910|gb|ACU46527.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+ S T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---ITDRGRQKVXS---LNDTTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 141 GIGGNEQXDKLVSXGIRK 158
>gi|158931137|sp|P22382|POL_SIVGB RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1441
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 19/148 (12%)
Query: 1 MDSKHLREVH-AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
+ + L V Y DGA + + G G + + + A++
Sbjct: 1025 LSPEPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQTELHAVKLALE- 1083
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V + TDS YV S + + + K
Sbjct: 1084 ----DSGSYVNIVTDSQYVVGIL-------------ASRPTETDHPIVKEIIELMKGKEK 1126
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ L W+ H G NE++D++ +
Sbjct: 1127 IYLSWLPAHKGIGGNEQIDKLVSSGIRK 1154
>gi|108708760|gb|ABF96555.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1659
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1093 MPEEKMEYWTMHFDGSKRLTG--AGAGVVLISPTGERLSYVLWIHFSASHNMAEYEALLH 1150
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1151 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCQ--DDNMTAYRQEVRKLEDKFDGLELT- 1207
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1208 -----------HVLRHNNEAADRLAN 1222
>gi|37991853|gb|AAR06299.1| putative gag-pol protein [Oryza sativa Japonica Group]
Length = 1653
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1093 MPEEKMEYWTMHFDGSKRLTG--AGAGVVLISPTGERLSYVLWIHFSASHNMAEYEALLH 1150
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1151 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCQ--DDNMTAYRQEVRKLEDKFDGLELT- 1207
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1208 -----------HVLRHNNEAADRLAN 1222
>gi|2944128|gb|AAC05235.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|4139739|pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
gi|6980904|pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKTQLQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDESESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|328834271|gb|AEB52699.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGIRK 713
>gi|306477769|gb|ADM89259.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|256011410|gb|ACU55561.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGRAGY--------------------VTDRGRQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + K+ L W+ H
Sbjct: 636 AIYLALQDSGLEVNIVTDSQYALGIIHAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSXGIRK 713
>gi|222428226|gb|ACM49911.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|37682510|gb|AAQ98199.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 593 YVDGAANRETKLGRAGY---VTDRGRQKIVSLTETTNQKTELQAIQL----ALQDSGVEV 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 646 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ +
Sbjct: 693 GIGGNEQIDKLVSSGIRK 710
>gi|32261495|gb|AAP76556.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1288
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 69 VLLYTDSSYVHKGFSQWIK------KWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ D + ++ + + K + T+D K + + + +V L
Sbjct: 910 IQKQGDDQWTYQIYQESFKNLKTGKYAKMRTAHTNDVKQLTEAVQKIATESIIKKERVYL 969
Query: 123 YWIKGHAGNQENEKVDRIARNAAVS 147
W+ H G NE+VD++ +
Sbjct: 970 SWVPAHKGIGGNEQVDKLVSSGIRK 994
>gi|89101279|ref|ZP_01174098.1| hypothetical protein B14911_07333 [Bacillus sp. NRRL B-14911]
gi|89084013|gb|EAR63195.1| hypothetical protein B14911_07333 [Bacillus sp. NRRL B-14911]
Length = 163
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 4/137 (2%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ Y DG + + G G ++ YK +K E + A A
Sbjct: 18 DITVYFDGGFNKDTYQAGLGAVIYYKQGKKKFRIRANERISEMETNNEAEYAAMHYAVTL 77
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + Q G + E + ++ +
Sbjct: 78 LEEMGAHHMTCRFLGDSQVVLKQLEGEWP--CYEESLNRWLDRIEEKIKKLGLEPKYEP- 134
Query: 128 HAGNQENEKVDRIARNA 144
EN++ D++A A
Sbjct: 135 -IPRSENKEADKLASQA 150
>gi|288187836|gb|ADC42405.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011276|gb|ACU55494.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYMAWVPAHKGI 697
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 698 GGNEQVDKL 706
>gi|255984524|gb|ACU46334.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKIGRAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|112497802|gb|ABI20213.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVISLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|82294408|sp|Q82851|POL_JEMBR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;
Contains: RecName: Full=Matrix protein p16; Short=MA;
Contains: RecName: Full=Capsid protein p26; Short=CA;
Contains: RecName: Full=Transframe peptide; AltName:
Full=p11; Contains: RecName: Full=Protease; AltName:
Full=P119; AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; AltName: Full=P72;
Contains: RecName: Full=Integrase; Short=IN
gi|733069|gb|AAA64389.1| gag-pol precursor [Jembrana disease virus]
gi|1581037|prf||2116345B gag-pol gene
Length = 1432
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 21/133 (15%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G+ R + + TN + EL A + AL ++
Sbjct: 966 YTDGGKKGSK---AAAAYWREGKIRREVF----PGTNQQAELKAVLMALQDGPAKMNII- 1017
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y +G + + W + G + ++ + V + W+ GH G
Sbjct: 1018 -TDSRYAFEGMREEPETWGREGLWKEIGEELRRKEY------------VGVSWVPGHKGI 1064
Query: 132 QENEKVDRIARNA 144
N +VD+ + A
Sbjct: 1065 GGNTEVDQEVQKA 1077
>gi|306477831|gb|ADM89290.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +TTN + EL A AL +V
Sbjct: 441 YVDGAANRETRLGKAGY---ITNKGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGVRK 558
>gi|288187552|gb|ADC42270.1| pol protein [Human immunodeficiency virus 1]
Length = 564
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGVRK 558
>gi|256011290|gb|ACU55501.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIELLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984386|gb|ACU46265.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S TTN + EL A AL +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTDKGRQKVVS--LPNTTNQKTELQAIHLALQDSGP--EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 141 GIGGNEQXDKLVSAGIRK 158
>gi|148745889|emb|CAK49333.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGIR 712
>gi|255984534|gb|ACU46339.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTDXGRQKVVSJTDTTNQKTELQAIQLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKIYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|255984302|gb|ACU46223.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRXTKJGKAGYVTDRGRZKVVPLTDTTNQXTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEZXIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|325635691|gb|ADZ33515.1| pol protein [Human immunodeficiency virus 1]
gi|325635706|gb|ADZ33528.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 607 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 661
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 662 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHKGI 708
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 709 GGNEQVDKL 717
>gi|256011742|gb|ACU55727.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ T N+ + AI +V
Sbjct: 596 YXDGAANRETKLGKAGY------XTNRGRQKVXSLXDTTNQKTELQAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAGIRKI 714
>gi|312601968|gb|ADQ92540.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIPAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|288188452|gb|ADC42701.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRGTKLGKAGYVTNKGRQKVVALSDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|256011716|gb|ACU55714.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 600 YVDGAANRETXLGKAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 653 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSTGIRK 717
>gi|255984722|gb|ACU46433.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 143 GGNEQXDKLVSAGIRK 158
>gi|255984608|gb|ACU46376.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 143 GGNEQVDKL 151
>gi|255984090|gb|ACU46117.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETXLGKAGYVTNKGRQKVVTLNDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|226348634|gb|ACO50636.1| pol protein [Human immunodeficiency virus 1]
Length = 451
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 79 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 133
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 134 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 180
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 181 GGNEQVDKLVSTGIRK 196
>gi|242207755|ref|XP_002469730.1| predicted protein [Postia placenta Mad-698-R]
gi|220731150|gb|EED84997.1| predicted protein [Postia placenta Mad-698-R]
Length = 319
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
F+ + + V L W+ H + NE VD +A+ A +
Sbjct: 79 CSALRAFLAGNPRRWVLLLWVPAHKNIEPNEFVDELAKAALDGIQ 123
>gi|170778925|gb|ACB36862.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|113706890|gb|ABI36555.1| pol protein [Human immunodeficiency virus 1]
Length = 768
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNKGRQKVVALTDTTNQKTELQAIHLALQ-----DSGEEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 701 GGNEQIDKLVSTGIRK 716
>gi|7144664|gb|AAF37328.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 431 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 485
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 486 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 532
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 533 GGNEQVDKL 541
>gi|312601860|gb|ADQ92487.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|289187386|gb|ADC92271.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|288899108|gb|ADC67086.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGVEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 699 GGNEQIDKLVSKGIR 713
>gi|288187939|gb|ADC42456.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|255984702|gb|ACU46423.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTDTTNQKTELQAIQL----ALQDSGLEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + K+ L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKIYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|226933750|gb|ACO91937.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 595 YVDGAANRETKLGXAGYVTDKGKQKVITIQETTNQKAELHAIQLALQ-----DSGSEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + + L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIXKERXYLXWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIRK 712
>gi|158828300|gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 15/134 (11%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDGA GNPG G +LR + + + A + + +Y
Sbjct: 638 TDGASKGNPGLATAGGILR-------------QQDGSWIGGFAVNIGICSAPLAELWRVY 684
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI--KGHAG 130
+ ++ + T + + F+ + WI H
Sbjct: 685 YGLYIAWERKITRLEVEVDSELVVGFLTTWISDSHPLSFLVRLCYGFISRDWIVRISHVY 744
Query: 131 NQENEKVDRIARNA 144
+ N D +A A
Sbjct: 745 REANRLADGLANYA 758
>gi|45361065|gb|AAS59296.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G N++VD++ N
Sbjct: 696 GIGGNDQVDKLVSNGIRKI 714
>gi|38679133|gb|AAR26388.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 602 YVDGADDRDTKLGKAGYVTDRGRQKIITLTETTNQKIELQAIQLALQ-----DSESEVHI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV + W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYITWVPAHKGI 703
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIR 718
>gi|302393367|dbj|BAJ14410.1| pol protein [Simian immunodeficiency virus]
Length = 453
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 268 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 324
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 325 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 369
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 370 GGNQEVDHLVSQGIRQ 385
>gi|288187730|gb|ADC42356.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKGESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIR 656
>gi|29409327|gb|AAM67403.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 591 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTETTNQKTELH 630
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 631 AIYLALQDSGPEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHK 690
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 691 GIGGNEQVDKLVSSGIRK 708
>gi|288187588|gb|ADC42287.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011610|gb|ACU55661.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTXNQKXELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 651 VTDSQYALGII--------------QAQPDKSESEJVSQIIEQLIXKEKVYLAWVPAHKG 696
Query: 131 NQENEKVDRIARNAAV 146
NE VD++
Sbjct: 697 IGGNEXVDKLVSXGIR 712
>gi|256010867|gb|ACU55290.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANKETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIR 712
>gi|255984496|gb|ACU46320.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + ++ A++ V +
Sbjct: 41 YVDGAAXXETKLGKAGYVTDRGRQKVVPIXDTTNQKTELQAILLALQ-----DSGLDVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|255984206|gb|ACU46175.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 143 GGNEQVDKL 151
>gi|37221338|gb|AAQ89799.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|8885974|gb|AAF80323.1|AF156845_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1016
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 609 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 661
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 662 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 708
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 709 GIGGNEQIDKLVSAGIRK 726
>gi|9758579|dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 11/134 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGA GNPG G +LR + G + L + +
Sbjct: 148 VKVNTDGASRGNPGLASAGGVLRD-CEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWE 206
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + S+ I + + G S + + V +Y
Sbjct: 207 KKV---PRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIVYVY----- 258
Query: 129 AGNQENEKVDRIAR 142
+ N D +A
Sbjct: 259 --REANCLADGLAN 270
>gi|306477765|gb|ADM89257.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|289187296|gb|ADC92227.1| pol protein [Human immunodeficiency virus 1]
Length = 558
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGXEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++ +
Sbjct: 543 GGNEQXDKLVSSGIRK 558
>gi|255984394|gb|ACU46269.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNXGRQKVVSJTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|306478257|gb|ADM89503.1| pol protein [Human immunodeficiency virus 1]
Length = 639
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 232 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 286
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H G
Sbjct: 287 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKGI 333
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 334 GGNEQVDRLVSAGIRK 349
>gi|302393404|dbj|BAJ14436.1| pol protein [Simian immunodeficiency virus]
Length = 481
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 102 YVDGSCNRQSREGKAGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 158
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 159 --DSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 203
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 204 GGNQEVDHLVSQGIRQ 219
>gi|301503587|gb|ADK75306.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIR 713
>gi|289187203|gb|ADC92181.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVFPLTDTTNQKAELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSGGIRK 657
>gi|254548002|gb|ACT66823.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + TTN + EL A + AL +
Sbjct: 592 YVDGAANRETKLGKAGYVTDRGRQKIIK---LEGTTNQKAELEAVLLALKESGKQANI-- 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV S + + + E + + KV L W+ H G
Sbjct: 647 VTDSQYVLGIIS-------------ATPDQSDSPLVQKIIEEMTKKEKVYLSWVPAHKGI 693
Query: 132 QENEKVDRI 140
NE +D++
Sbjct: 694 GGNENIDKL 702
>gi|226348522|gb|ACO50580.1| pol protein [Human immunodeficiency virus 1]
Length = 755
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSTGIRK 491
>gi|212383207|gb|ACJ25895.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKIIPLTETTNQKAELQAIQLALQ-----DSGPEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKTYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|112497812|gb|ABI20222.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVISLTETTNQKTELHAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|25167001|gb|AAN73772.1|AF484515_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 1026 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 1078
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 1079 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 1125
Query: 130 GNQENEKVDRIARNAAVSF 148
G N++VD++ N
Sbjct: 1126 GIGGNDQVDKLVSNGIRKI 1144
>gi|301503572|gb|ADK75293.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 652 VTDSQYS-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 699 GGNEQVDKLVSTGIR 713
>gi|255984780|gb|ACU46462.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGXQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 143 GGNEQVDXLVSXGIRK 158
>gi|18699126|gb|AAL78401.1|AF413972_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 182 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 236
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 237 VTDSQYALGIIQAQPDRSELEIVNKIIEKLIEKE-------------RVYLTWVPAHKGI 283
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 284 GGNEQVDKL 292
>gi|8885972|gb|AAF80322.1|AF156844_1 pol polyprotein [Human immunodeficiency virus 1]
Length = 1024
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 617 YVDGAANRETKLGRAGY---VTDRGKQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 669
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 670 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 716
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 717 GIGGNEQIDKLVSAGIRK 734
>gi|303288161|ref|XP_003063369.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455201|gb|EEH52505.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 208
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 6/150 (4%)
Query: 9 VHAYTDGACSGN--PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ A+ DG+ P G GV R + NN EL+A AL
Sbjct: 2 IVAHVDGSVEPKRFPPVAGVGVYYRPGDALNYAARAPLAEDNNATELLAVFVALVRHPRR 61
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---VDLY 123
+ + TDS + + +K + + + ++ A + +
Sbjct: 62 SPITIRTDSRATLDVLERLARGDGLRAFKFKGARGAASCRATLFWLRAVLFWREAATAVR 121
Query: 124 WIKGHAG-NQENEKVDRIARNAAVSFKNKI 152
+K HA +N D +AR A + ++
Sbjct: 122 KVKAHAAATPDNATADALARVGANASAKRV 151
>gi|288187953|gb|ADC42463.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
N+++D++
Sbjct: 642 GGNDQIDKLVSAGIRK 657
>gi|288187773|gb|ADC42376.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
N+++D++
Sbjct: 642 GGNDQIDKLVSAGIRK 657
>gi|49574327|gb|AAT66833.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|332796401|ref|YP_004457901.1| ribonuclease H [Acidianus hospitalis W1]
gi|332694136|gb|AEE93603.1| ribonuclease H [Acidianus hospitalis W1]
Length = 148
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 27/149 (18%)
Query: 6 LREVHAYTDGACSG-NPG-PGGWGVLLR--------YKGKEKIISGGEKETTNNRMELMA 55
+ +V+ DG C NPG + +++ Y EK S M
Sbjct: 1 MAKVN--FDGLCEPKNPGGIATYAYVIKIDNQVLQGYGLAEKPWSKDSTNNVAEYMGAYC 58
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
AI+ L L + Y DS V + S +
Sbjct: 59 AIRKLIQLGITKAI-FYGDSQLVIRQLSGEYRIK----------SPRLKRIYDKIQESLK 107
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++ WI +EN + DR+ R A
Sbjct: 108 NFEHIEFKWIP----REENTEADRLTRIA 132
>gi|301503533|gb|ADK75266.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKAVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIRK 657
>gi|288187656|gb|ADC42319.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKSELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGVRK 558
>gi|256011424|gb|ACU55568.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + KG++K++S + TN + EL A AL +V +
Sbjct: 597 YVDGAANRET-KSGRAGYVTDKGRQKVVS--LADXTNQKTELQAIHLALQDSGL--EVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKXYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 699 GGNEQVDKLVSAGIRK 714
>gi|226348722|gb|ACO50680.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGQAGYVTDRGRQKVVTLADTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|58220931|gb|AAW68116.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKIIPLTETTNQKAELQAIQLALQ-----DSGPEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKTYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 700 GGNEQVDKLVSSGIRK 715
>gi|37221266|gb|AAQ89764.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|328834073|gb|AEB52523.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325638342|gb|ADZ35767.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|325638310|gb|ADZ35739.1| pol protein [Human immunodeficiency virus 1]
gi|325638318|gb|ADZ35746.1| pol protein [Human immunodeficiency virus 1]
gi|325638326|gb|ADZ35753.1| pol protein [Human immunodeficiency virus 1]
gi|325638334|gb|ADZ35760.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|289469909|gb|ADC96609.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIINQIIEELINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|289469776|gb|ADC96543.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTNRGRQKVVHLTDTTNQKSELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|256011644|gb|ACU55678.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 596 YVDGAAHRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLVKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|256011214|gb|ACU55463.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 599 YVDGAANRETKLGKAGY--------------------VTNRGRQKVVSLTDTTNQKTELQ 638
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV + W+ H
Sbjct: 639 AIYLALQDSGLEXNIVTDSQYALGIIQAQPDKSESELVGQIIEQLIKKZKVYMAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 699 GIGGNEQVDKLVSAGIR 715
>gi|256010992|gb|ACU55352.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLINKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIR 715
>gi|306478237|gb|ADM89493.1| pol protein [Human immunodeficiency virus 1]
Length = 563
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 156 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIYLALQ-----DSGSEVNI 210
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 211 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 257
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 258 GGNEQVDKLVSTGIRK 273
>gi|289469836|gb|ADC96573.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAXNRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIJ-------------QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRKI 559
>gi|288899104|gb|ADC67084.1| pol protein [Human immunodeficiency virus 1]
gi|288899106|gb|ADC67085.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 652 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 698
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 699 GGNEQIDKLVSKGIR 713
>gi|255984296|gb|ACU46220.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKXGKAGYVTDRGRQKVXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 143 GGNEQXDKLVSAGIRK 158
>gi|222428662|gb|ACM50259.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVR 712
>gi|288187852|gb|ADC42413.1| pol protein [Human immunodeficiency virus 1]
Length = 551
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 543 GGNEQIDKL 551
>gi|288187755|gb|ADC42368.1| pol protein [Human immunodeficiency virus 1]
Length = 569
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKVGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|255984896|gb|ACU46520.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI V
Sbjct: 41 YVDGAANRETXLGKAGY---VTDRGRQKVVSITD---TTNQKTELQAIHLALQDSGLA-V 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 94 NIVTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSTGIRK 158
>gi|255983972|gb|ACU46058.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTBKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNX 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYAJGII-------------QAQPDKSESELVNQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 642 GGNEQVDKLVSNGIRK 657
>gi|156937941|ref|YP_001435737.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
gi|156566925|gb|ABU82330.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
Length = 163
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 6/146 (4%)
Query: 1 MDSKHLREVHAYTDGACSG-NPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M R + Y DG C NPG +G +++ GK G ++ +
Sbjct: 1 MSGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVA 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
TAL + LL + + ++ + L+ + E ++
Sbjct: 61 EYTALIKALECLLEKGLEGAEVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKF 120
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
K +L W+ + NE+ D ++R A
Sbjct: 121 KAELQWVP----RELNEEADALSREA 142
>gi|49574317|gb|AAT66828.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|288187688|gb|ADC42335.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+++ + ++ + +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTNKGRQKVVTLTDTTNQKTELQAINL----ALQDSGEEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 640 GIGGNEQIDKLVSAGIRK 657
>gi|255984754|gb|ACU46449.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYAJGII-------------QAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE VD++
Sbjct: 143 GGNEXVDKLVSAGIR 157
>gi|226348514|gb|ACO50576.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 476 GGNEQVDKLVSTGIR 490
>gi|13095409|gb|AAK12260.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQCALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|49574250|gb|AAT66797.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYPAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|60651829|gb|AAX32924.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGCVSDRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS + + + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQFAYGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|60652056|gb|AAX33128.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGCVSDRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS + + + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQFAYGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|325637296|gb|ADZ34875.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRENKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|289469840|gb|ADC96575.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 441 YVDGAXSRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|226348620|gb|ACO50629.1| pol protein [Human immunodeficiency virus 1]
Length = 455
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 79 YVDGAANRETKLGKAGYVTDRGRQKVVSISDTTNQKTELQAIHLALQ-----DSGLEVNI 133
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 134 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 180
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 181 GGNEQVDKLVSSGIRK 196
>gi|157274042|gb|ABV28310.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIRK 713
>gi|49574312|gb|AAT66826.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|328834450|gb|AEB52858.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 592 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 631
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 632 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKVYLSWVPAHK 691
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 692 GIGGNEQVDKL 702
>gi|312601963|gb|ADQ92538.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 596 YVDGAASRETKLGRAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|255984346|gb|ACU46245.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 143 GGNEQVDKLVSSGIRK 158
>gi|255984036|gb|ACU46090.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVXPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 642 GGNEQXDKLVSAGIRK 657
>gi|255541964|ref|XP_002512046.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223549226|gb|EEF50715.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 244
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDGA G GP G L+R I + + + LK K+
Sbjct: 89 TDGAKRGEDGPAAAGGLIRDSRGRWIRGFKCYMGLGSTSVKAELLGLIEGLKLARKIGC- 147
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
+ + ++ + + + + + + Q + W H N+
Sbjct: 148 --EKLIVETDNEGVVQMIKIKTNRQND---------NYILASEIQQLLQKGWEVQHCKNK 196
Query: 133 ENEKVDRIAR 142
+N DR+A
Sbjct: 197 QNRCADRLAN 206
>gi|224141789|ref|XP_002324246.1| predicted protein [Populus trichocarpa]
gi|222865680|gb|EEF02811.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 19/139 (13%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAI--KALTAL 63
+ DG GNPG G G ++R I + ++ EL A L
Sbjct: 83 RIKLNVDGCSKGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAWD 142
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ KV L +DS V + + +N K + D +
Sbjct: 143 RGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKDMLGRDWEVTTY----------- 191
Query: 124 WIKGHAGNQENEKVDRIAR 142
H + N D +A
Sbjct: 192 ----HVYREANCVADWLAN 206
>gi|38491638|gb|AAR22033.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE++D++ N
Sbjct: 696 GIGGNEQIDKLVSNGIRRI 714
>gi|328833912|gb|AEB52399.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTNRGRQKVLSLTD---TTNQQTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|289187260|gb|ADC92209.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVXLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|37496577|emb|CAD83157.1| polymerase [Simian immunodeficiency virus Qu]
Length = 631
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDGA + G G + K G + TTN + EL A L + P K+ L
Sbjct: 342 YTDGAANRESKLGKAGYV---TNTGKRACIGLENTTNQKAELEAV--KLALKEGPRKMNL 396
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV F + SD V++I + E V L W+ H G
Sbjct: 397 VTDSQYVLNIF--------AGAPEVSDHPLVEDIIQLLLGKE-----SVYLTWVPAHKGI 443
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 444 GGNEEVDKLVSSGIRQ 459
>gi|28933403|gb|AAO62617.1|AF468970_2 pol protein [Human immunodeficiency virus 1]
Length = 879
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
N+++D++ +
Sbjct: 642 GGNDQIDKLVSSGIRK 657
>gi|18699123|gb|AAL78399.1|AF413971_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 182 YVDGAANRETKTGKAGYVTDRGRQKVVPLTEATNQKTELHAIHLALQ-----DSGSEVNI 236
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 237 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 283
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 284 GGNEQVDKL 292
>gi|312601989|gb|ADQ92550.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVYLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESKLVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 704 GGNEQIDKLVSTGIRK 719
>gi|312601874|gb|ADQ92494.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|283444818|gb|ADB20294.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 592 YVDGAANRETKTGKAGYVTDRGRQKVVTLNETTNQKTELQAIQLALQ-----DSGLEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + +V L W H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKERVYLSWXPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 694 GGNEQVDKLVSSGIRK 709
>gi|328834396|gb|AEB52810.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 593 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 632
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + K+ L W+ H
Sbjct: 633 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIGKDKIYLSWVPAHK 692
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 693 GIGGNEQVDKLVSTGIR 709
>gi|306477767|gb|ADM89258.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|306477511|gb|ADM89130.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVISLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIR 557
>gi|238634123|gb|ACR52023.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 599 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGLEV 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 652 NIVTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKERVYLAWVPAHK 698
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 699 GMGGNEQVDKLVSSGIRK 716
>gi|212541462|ref|XP_002150886.1| hypothetical protein PMAA_060570 [Penicillium marneffei ATCC 18224]
gi|210068185|gb|EEA22277.1| hypothetical protein PMAA_060570 [Penicillium marneffei ATCC 18224]
Length = 423
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 16 ACSGNPGPGGWGVLLR------YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
A + G G GV L+ ++ E +I G + + + +A++ P +
Sbjct: 128 AAEQDDGRTGAGVALQTVPEALWEHLELLIYTGFEVFDAELVGVASALEWALERHLPGPI 187
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ D+ K +++ + V + W+ GH
Sbjct: 188 HVLLDAQNAIKRLQSTEPG---------AGQSLALRPHMTASRLRLSGRPVTIQWVPGHN 238
Query: 130 GNQENEKVDRIARNAAVS 147
+ NE+ D+ A+ A
Sbjct: 239 RVEGNEQADQAAKPTASK 256
>gi|112497872|gb|ABI20276.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKVXKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGPEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|42592290|emb|CAF29006.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 567
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 425 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 479
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 480 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 526
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 527 GGNEQVDKLVSNGIR 541
>gi|60651839|gb|AAX32933.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGCVSDRGRQKVVPLTDTTNQKTELQAILLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS + + + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQFAYGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|289469886|gb|ADC96598.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTNKGRQKVVSLTD---TTNQKTELEAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSTGIRK 558
>gi|289187226|gb|ADC92192.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIR 656
>gi|255984248|gb|ACU46196.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|255984874|gb|ACU46509.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTNRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|37221203|gb|AAQ89733.1| pol protein [Human immunodeficiency virus 1]
Length = 653
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIRKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 642 GGNEQVDKL 650
>gi|49574310|gb|AAT66825.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|325635824|gb|ADZ33629.1| pol protein [Human immunodeficiency virus 1]
gi|325635840|gb|ADZ33643.1| pol protein [Human immunodeficiency virus 1]
gi|325635870|gb|ADZ33669.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 654 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIR 715
>gi|288558507|dbj|BAI68311.1| polyprotein [Human immunodeficiency virus 1]
Length = 330
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 193 YVDGAASRETKLGKAGY--------------------VTDRGRQKXVSLTETTNQKTELH 232
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + E + K L W+ H
Sbjct: 233 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEELIKKEKXYLSWVPAHK 292
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 293 GIGGNEQVDKLVSSGIRK 310
>gi|256010847|gb|ACU55280.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSIADTTNQKTELQAINL----ALQDSGLEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIR 712
>gi|317038539|ref|XP_001401641.2| hypothetical protein ANI_1_1680184 [Aspergillus niger CBS 513.88]
Length = 279
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 11 AYTDGACS------GNPGPGGWGVLLRYKGKEKIISG-------------GEKETTNNRM 51
YT GAC N GW + R + + I+G T+ R
Sbjct: 104 VYTAGACHDNWKGDENYAKAGWSFVYRPQNPSRNITGGVAGRLEMTGPTKVYHRQTSTRA 163
Query: 52 ELMAAI----KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
EL A I +++ TDSSYV G + WI+KW GW+++ K +KN DL
Sbjct: 164 ELRAVIAALKYLSHDGNTFDSLVIATDSSYVVNGATLWIRKWLSKGWRSAIGKPIKNKDL 223
Query: 108 WMKFVEASAQHKVDLYWIK-GHAGNQENEKVDRIARNA 144
W ++ + I H N+ R+A A
Sbjct: 224 WEALLKEVRCWYEEGREIYLWHIDRLHNQDAVRLANWA 261
>gi|306477523|gb|ADM89136.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPNQSE-------------SETVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|255984354|gb|ACU46249.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|328834312|gb|AEB52735.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIVEQLINKEQVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVR 712
>gi|327458209|gb|AEA76544.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESDLVNQIIEQLIKKEKXYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIRK 558
>gi|289469822|gb|ADC96566.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|255984684|gb|ACU46414.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAXNRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYAIGIIQAQPDQSE-------------SELVSQIIEQLIXKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984624|gb|ACU46384.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTNKGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 141 GIGGNEQIDKLVSAGIRK 158
>gi|118082356|ref|XP_001234909.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
Length = 477
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+T + + TDS V++G + T + + D+W+
Sbjct: 1 MVITQEPGNSALNICTDSWAVYRGLT-LWIAQWATQDWTIHARPIWGKDMWVDIWNVVRH 59
Query: 118 HKVDLYWIKGHAG--NQENEKVDRIAR 142
V Y + GH + N++ D +AR
Sbjct: 60 RTVRAYHVSGHQPLQSPGNDEADTLAR 86
>gi|322800141|gb|EFZ21232.1| hypothetical protein SINV_06007 [Solenopsis invicta]
Length = 91
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
++ L WI GH G + NE+ D +AR A ++
Sbjct: 19 EIKLIWIPGHIGIKSNERTDHLARKAIRDGRD 50
>gi|289187256|gb|ADC92207.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNKGRQKVVTLTDTTNQKTELQAIXLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 642 GGNEQXDKLVSTGIRK 657
>gi|255984094|gb|ACU46119.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ V +
Sbjct: 540 YVDGAANRXTKLGXAGYVTNRGRQKVISLTDTTNQKTELQAIXLALQ-----DSGXXVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNNIIEQLIKKEKXYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIRK 657
>gi|37221205|gb|AAQ89734.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|37221201|gb|AAQ89732.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|49574321|gb|AAT66830.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++ + ++ + T +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVPLTDTTNQKTELQAINL----TLQDSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVSF 148
G N +VD++
Sbjct: 541 GIGGNTQVDKLVSAGIRKI 559
>gi|289187240|gb|ADC92199.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|134284827|gb|ABO69513.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 608 YIDGGRKKGQKARAGW------WKNSTEWQIMEIEGSNQIAEAQALNMALKAGSERMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 705
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 706 IPGNKEIDEL 715
>gi|49574308|gb|AAT66824.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|256010923|gb|ACU55318.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 20/136 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ A++ +V
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAXHLALQ-----DSGLEVNX 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 651 VTDSQYXXGII--------------QAQPDKSESEJVXQIIEQLIKKEKVYLAWVPAHKG 696
Query: 131 NQENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 IGGNEQVDKLVSTGIR 712
>gi|242827044|ref|XP_002488757.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712149|gb|EED11576.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 8 EVHAYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ YTDG+ G G+ G + ++ E E + L A++
Sbjct: 1652 HIAIYTDGS-----GYQGYIGASMVFQHSENNER---TEVCGIKFALETALQIADQDIRT 1703
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K+++++DS K Q + L E V L WI
Sbjct: 1704 KKLVIFSDSQAALKTLMNLRMVSGQTYIQ------GCVDSLRKCTDEDI---DVTLRWIP 1754
Query: 127 GHAGNQENE 135
GH G NE
Sbjct: 1755 GHEGVPGNE 1763
>gi|312601976|gb|ADQ92544.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIRK 713
>gi|289187270|gb|ADC92214.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIR 656
>gi|255984410|gb|ACU46277.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVTLXDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++ +
Sbjct: 143 GGNEQXDKLVSSGIRK 158
>gi|18389684|gb|AAL68749.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 999
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ + KG++K+++ E T N+ + AI +V
Sbjct: 592 YVDGAANRETKIRKAGY---ITDKGRQKVVTLTE---TTNQKTELEAIHLALQDSGL-EV 644
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 645 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 691
Query: 130 GNQENEKVDRIARNAAVS 147
G NE VD++
Sbjct: 692 GIGGNELVDQLVSAGVRK 709
>gi|255984378|gb|ACU46261.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|119507391|dbj|BAF42607.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTDKGRQKVVTVNDTTNQKTELQAIYLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|329733410|gb|EGG69742.1| hypothetical protein SA21193_2492 [Staphylococcus aureus subsp.
aureus 21193]
Length = 133
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG V+++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAVVIKEDEQHYTYTHELGEMDNHTAEWAACIYALKHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + F+ + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSFN---------AGYVKNAKFKPYFDQLEIFEQDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|256011540|gb|ACU55626.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + +TTN + EL A + AL +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVS---LADTTNQKTELQAILLALQDSGAEXNI-- 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDISESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|256010745|gb|ACU55229.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 595 YVDGAANRETRLGRAGY--------------------VTNRGRQKVVSLTDTTNQKTELQ 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + K+ L W+ H
Sbjct: 635 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSAGIR 711
>gi|255984950|gb|ACU46547.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984652|gb|ACU46398.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|222428345|gb|ACM50006.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGASNRETKIGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLALQ-----DSGLEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 653 VTDSQYALGILQAQPDRSE-------------SEIVSQIIEQLINKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 700 GGNEQIDKL 708
>gi|157849824|gb|ABV89702.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRKKIVSLNETTNQKTELQAICI----ALQDSGPEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + + L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERAYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 694 GIGGNEQVDKLVSNGIR 710
>gi|327458221|gb|AEA76550.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|263200996|gb|ACY70095.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKLGKAGYVTDRGRQKVVTLNNTTNQKTELQAIKLALQ-----DSGLEVNV 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVSQIIELLINKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 700 GGNEQVDKLVSNGIR 714
>gi|256011730|gb|ACU55721.1| pol protein [Human immunodeficiency virus 1]
Length = 1016
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + + G G+ T N+ + AI +V
Sbjct: 609 YVDGAANRDTKLGKAGY------XTDRGRQKVXSLXDTTNQKTELQAIHLALQDSGL-EV 661
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 662 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHK 708
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 709 GIGGNEQVDKLVSNGIR 725
>gi|255984632|gb|ACU46388.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANREXKLEKAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYS-------------LGIIQAQPDKSESELVNQIIEQLIKKKKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSAGIRK 158
>gi|118088210|ref|XP_001234954.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
gi|118090211|ref|XP_001234200.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
Length = 477
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+T + + TDS V++G + T + + D+W+
Sbjct: 1 MVITQEPGNSALNICTDSWAVYRGLT-LWIAQWATQDWTIHARPIWGKDMWVDIWNVVRH 59
Query: 118 HKVDLYWIKGHAG--NQENEKVDRIAR 142
V Y + GH + N++ D +AR
Sbjct: 60 RTVRAYHVSGHQPLQSPGNDEADTLAR 86
>gi|118086512|ref|XP_001231293.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
gi|118087430|ref|XP_429751.2| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
gi|118093064|ref|XP_001234629.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
Length = 477
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+T + + TDS V++G + T + + D+W+
Sbjct: 1 MVITQEPGNSALNICTDSWAVYRGLT-LWIAQWATQDWTIHARPIWGKDMWVDIWNVVRH 59
Query: 118 HKVDLYWIKGHAG--NQENEKVDRIAR 142
V Y + GH + N++ D +AR
Sbjct: 60 RTVRAYHVSGHQPLQSPGNDEADTLAR 86
>gi|49574252|gb|AAT66798.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|289187262|gb|ADC92210.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYXAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|288188482|gb|ADC42715.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K+++ + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---ITNKGRQKVVTLTD---TTNQKTELQAIHLALQDSG-AEV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 640 GIGGNEQIDKLVSAGIRK 657
>gi|282916700|ref|ZP_06324458.1| ribonuclease HI [Staphylococcus aureus subsp. aureus D139]
gi|283770504|ref|ZP_06343396.1| ribonuclease HI [Staphylococcus aureus subsp. aureus H19]
gi|282319187|gb|EFB49539.1| ribonuclease HI [Staphylococcus aureus subsp. aureus D139]
gi|283460651|gb|EFC07741.1| ribonuclease HI [Staphylococcus aureus subsp. aureus H19]
Length = 133
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQRYTYTHELGEMDNHTAEWAACIYALKHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEQNFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|194399839|gb|ACF60820.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDQSE-------------SEIVNQIIEQLIKKEKVYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 697 GGNEQVDKLVSTGIR 711
>gi|118103477|ref|XP_001232570.1| PREDICTED: similar to Pro-Pol-dUTPase polyprotein; RNaseH; dUTPase;
integrase; protease; reverse transcriptase [Gallus
gallus]
Length = 477
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+T + + TDS V++G + T + + D+W+
Sbjct: 1 MVITQEPGNSALNICTDSWAVYRGLT-LWIAQWATQDWTIHARPIWGKDMWVDIWNVVRH 59
Query: 118 HKVDLYWIKGHAG--NQENEKVDRIAR 142
V Y + GH + N++ D +AR
Sbjct: 60 RTVRAYHVSGHQPLQSPGNDEADTLAR 86
>gi|49574314|gb|AAT66827.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|116753484|ref|YP_842602.1| ribonuclease H [Methanosaeta thermophila PT]
gi|116664935|gb|ABK13962.1| ribonuclease H [Methanosaeta thermophila PT]
Length = 142
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 9 VHAYTDGACSG-NPG-PGGWGVLLRYKGKEKIISGG--------EKETTNNRMELMAAIK 58
+ + DG CS NPG +G L Y+ E + G L+AAI+
Sbjct: 2 ITVFFDGLCSPKNPGGVAAYG-YLVYRNGELLHRGWGVVGEGSGMTNNVAEYEALLAAIR 60
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ +V+ DS+ V K S + + +
Sbjct: 61 WIQKNAPGERVVFKGDSNLVIKQMSGEWRVR-----------SHTSKRYVPIIKSMLEGI 109
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ + W+ +EN + D ++++A ++
Sbjct: 110 EHEFVWVP----REENAEADALSKHAYEIYRR 137
>gi|312602039|gb|ADQ92573.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQVDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGVRK 657
>gi|289469874|gb|ADC96592.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKAVPLIDTTNQKTELHAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|288187787|gb|ADC42382.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAIQLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGVR 656
>gi|226348658|gb|ACO50648.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGQAGYVTDRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIRK 491
>gi|226348526|gb|ACO50582.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGRAGYVTSKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGSEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGIR 490
>gi|49574325|gb|AAT66832.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++
Sbjct: 543 GGNTQVDKLVSAGIRKI 559
>gi|256011516|gb|ACU55614.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNXGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGXIQAQPDQSE-------------SELVNQIIEQLIQKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVSF 148
NE+ D++
Sbjct: 698 GGNEQXDKLVSAGIRKI 714
>gi|255984058|gb|ACU46101.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + +G++K++S + T N+ + AI P +V +
Sbjct: 540 YVDGAANR-GTRLGKAGYVTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGP-EVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + K L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEXLINKEKXYLXWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|226348738|gb|ACO50688.1| pol protein [Human immunodeficiency virus 1]
Length = 705
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTSNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 429 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 476 GGNEQVDKLVSAGVRK 491
>gi|226348710|gb|ACO50674.1| pol protein [Human immunodeficiency virus 1]
Length = 439
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 80 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTSNQKTELQAIHLALQ-----DSGLEVNI 134
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 135 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 181
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 182 GGNEQVDKLVSAGIR 196
>gi|83722762|gb|ABC41655.1| pol protein [Feline immunodeficiency virus]
Length = 1136
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 606 YIDGGRKKGQKARAGW------WKNSTEWQIMEIEGSNQIAEAQALNMALKAGSERMNII 659
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 660 --TDSQYVYNMVM--------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 703
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 704 IPGNKEIDEL 713
>gi|60652007|gb|AAX33084.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 698 GGNEQVDGLVSAGIRK 713
>gi|261865410|gb|ACY01941.1| pol protein [HIV whole-genome vector AA1305#18]
Length = 1003
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 698 GGNEQVDGLVSAGIRK 713
>gi|325637133|gb|ADZ34740.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSA-SEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + + + + + KV L W+ H
Sbjct: 655 NIVTDSQYALGIIQGHPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ N
Sbjct: 702 GIGGNEQIDKLVSNGIRK 719
>gi|289469824|gb|ADC96567.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|289187211|gb|ADC92185.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|2570326|gb|AAC32654.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ETTN + EL A AL + +V +
Sbjct: 505 YVDGAANRETKLGKAGHVTDKGKQKIIT---LTETTNQKAELHAIQLALQDSRP--EVNI 559
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 560 VTDSQYA-------------LGIIQAQPDRSGSELVNQIIEQLIKKEKVYLSWVPAHKGI 606
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 607 GGNEQVDKLVSSGIRK 622
>gi|306478223|gb|ADM89486.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQARPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 543 GGNEQVDKLVSNGIGK 558
>gi|301609602|ref|XP_002934358.1| PREDICTED: hypothetical protein LOC100487718 [Xenopus (Silurana)
tropicalis]
Length = 913
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 12/138 (8%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ RE+H +TD A G G+G K S N + ++
Sbjct: 780 PRPNRELHLFTDAA-----GSAGFGAYFAGKW--CAASWPNTWVENKLTGNLTLLEFFPI 832
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + F+ + TS + V N+ + + +
Sbjct: 833 IVAIELWGTQLKNQ-SVVFFTDNMSVVMAITNLTSGSRPVLNLLKHLVLRCLQLNVRFEA 891
Query: 123 YWIKGHAGNQENEKVDRI 140
+ GH NE D +
Sbjct: 892 KHVPGHT----NEIADSL 905
>gi|299508011|dbj|BAJ09947.1| pol protein [Human immunodeficiency virus 2]
Length = 1041
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 621 YTDGSCNRVSKEGKAGYVTDRGRDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 675
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + E + V + W+ H G
Sbjct: 676 IVDSQYVMGIIAGQPTETESSIVNK-------------IIEEMIKKEAVYVGWVPAHKGL 722
Query: 132 QENEKVDRIARNAAVS 147
N+ VD +
Sbjct: 723 GGNQXVDHLVSQGIRQ 738
>gi|255983996|gb|ACU46070.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 595 VTDSQYALGII--------------QAQPDRSESEJVNQIIEQLXKKEKVYLTWVPAHKG 640
Query: 131 NQENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 641 IGGNEQXDKLVSTGIRK 657
>gi|149127146|gb|ABR20515.1| pol protein [Human immunodeficiency virus 1]
Length = 682
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 574 YVDGAANRETKQGKAGY---VTDRGRQKVVSITETTNQKTELQAINL----ALQDSGSEV 626
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 627 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKDKVYLTWVPAHK 673
Query: 130 GNQENEKVD 138
G NE+VD
Sbjct: 674 GIGGNEQVD 682
>gi|49574280|gb|AAT66811.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESQLVSQIIEQLIKKEKVYLTWVPTHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSFGIRK 558
>gi|289469814|gb|ADC96562.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTDTTNQKTELQAINL----ALQDSGSEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ +DS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GLGGNEQVDKLVSTGIRK 558
>gi|289187317|gb|ADC92237.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 441 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 543 GGNEQIDKLVSSGIRK 558
>gi|255984236|gb|ACU46190.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +G++KI+S + T N+ + AI +V
Sbjct: 41 YVDGAANRETXXGKAGY---XTDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGX-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 141 GIGGNEQVDKLVSXGIRK 158
>gi|192335087|gb|ACF04071.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKAVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y K + + + + + +V L W+ H G
Sbjct: 651 VSDSQYALGIIQALPDKSE-------------SELVNQIIEQLINKERVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|67541861|ref|XP_664698.1| hypothetical protein AN7094.2 [Aspergillus nidulans FGSC A4]
gi|40742109|gb|EAA61299.1| hypothetical protein AN7094.2 [Aspergillus nidulans FGSC A4]
gi|259483586|tpe|CBF79097.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 334
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 42/136 (30%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ Y+DG+ G+G + + I
Sbjct: 78 ISVYSDGS--RTSQGAGYGYAIYFGP----------------------ILVSKGHGPAGP 113
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
D+ + Q ++ K ++ WI GH
Sbjct: 114 RTEVYDAEIMGAVEGLHAALGQPCVGYSTQLKPLQVC------------------WIPGH 155
Query: 129 AGNQENEKVDRIARNA 144
+G N+ D++A+
Sbjct: 156 SGIAGNKLADKLAKLG 171
>gi|257146469|emb|CAT00612.1| gag/pol precursor [HIV-1 M_97CD.MBFE250]
Length = 1431
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1024 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELHAIYLALQ-----DSGSEVNV 1078
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 1079 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHKGI 1125
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 1126 GGNEQIDKLVSSGIRK 1141
>gi|255984328|gb|ACU46236.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 96 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|255984234|gb|ACU46189.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKAXSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 143 GGNEQVDKL 151
>gi|306478243|gb|ADM89496.1| pol protein [Human immunodeficiency virus 1]
Length = 553
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 146 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAIYLALQ-----DSGSEVNI 200
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 201 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 247
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 248 GGNEQVDKLVSTGIRK 263
>gi|233956501|gb|ACQ91221.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 702 GGNEQIDKLVSTGIRK 717
>gi|289469862|gb|ADC96586.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVNLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIXKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|289469854|gb|ADC96582.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 441 YVDGAANRETXLGKAGYVTNRGRQKVXSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|226348702|gb|ACO50670.1| pol protein [Human immunodeficiency virus 1]
Length = 464
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 81 YVDGAASRETKLGQAGYVTDRGRQKVVALTDTTNQKTELQAIYLALQ-----DSGLEVNI 135
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 136 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 182
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 183 GGNEQVDKLVSAGIRK 198
>gi|189310224|emb|CAP72504.1| Pol protein [SIV-wrc Pbt-05GM-X02]
Length = 1012
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 23/140 (16%)
Query: 10 HAYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
Y DG+ + G G+ K + +K T + +
Sbjct: 608 EMYIDGSANKESKEGKAGY--------WTKTRNKIQKITNTTNQQTELIALRMALEDSSD 659
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
KV + TDS YV T + + + ++ + W+
Sbjct: 660 KVNIITDSQYV---------LGIIKDHPTQSESPLMQ----EIIDLLKGKEEIYITWVPA 706
Query: 128 HAGNQENEKVDRIARNAAVS 147
H G N ++D + S
Sbjct: 707 HKGIGGNTEIDALVSAGIRS 726
>gi|330468264|ref|YP_004406007.1| ribonuclease H [Verrucosispora maris AB-18-032]
gi|328811235|gb|AEB45407.1| ribonuclease H [Verrucosispora maris AB-18-032]
Length = 263
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 11/141 (7%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TD + GG G ++ + T ++ +
Sbjct: 94 TDASWK--DRAGGIGYVVSDGHYGLRGRCSVRMDTTGCSRVLINELRAVDFLLGAHDVPP 151
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA---------SAQHKVDLY 123
+ + Q +T+ ++ + + ++
Sbjct: 152 VGMVVLLDSLAALRYLHQWQAGETTAMPAGYSLRPRQWSDQPTLVRLAQLVQQRPELSFE 211
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+KGH+G+ NE D ++ A
Sbjct: 212 HVKGHSGHPLNEAADALSHMA 232
>gi|257449256|gb|ACV53613.1| pol polyprotein [Caprine arthritis encephalitis virus]
Length = 981
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 25/145 (17%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G + + + G + R A + P + +
Sbjct: 563 YTDGGKKN--KIGSLGFIASTGKRFRKHEEGTNQQLELRAIEEA------CKQGPDSMNI 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + D++++ N + + ++W+ GH G
Sbjct: 615 VTDSRYAYEFLLRDW-----------DEESIVNPIQARIMRIVHHKTALGVHWVPGHKGI 663
Query: 132 QENEKVDRI------ARNAAVSFKN 150
+NE++D+ AR AA +
Sbjct: 664 PQNEEIDKYISEVFPAREAASHGRE 688
>gi|256011770|gb|ACU55741.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K+IS + ++ + +V
Sbjct: 603 YVDGAANRETKLGKAGY---VTDRGRQKVISLTDTTNQKTELQAINL----ALQDSGLEV 655
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 656 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 702
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 703 GIGGNEQVDKLVSTGIR 719
>gi|226348550|gb|ACO50594.1| pol protein [Human immunodeficiency virus 1]
Length = 456
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + ++ + + A++ +V +
Sbjct: 73 YVDGAANRDTKLGRAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 127
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 128 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 174
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 175 GGNEQVDKLVSAGIRK 190
>gi|170676553|gb|ACB30420.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|288187834|gb|ADC42404.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984640|gb|ACU46392.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 20/136 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNKGRQKXVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 96 VTDSQYALGII--------------QAQPDKSESEJVNQIIEQLIKKEKVYLAWVPAHKG 141
Query: 131 NQENEKVDRIARNAAV 146
NE+VD++
Sbjct: 142 IGGNEQVDKLVSAGIR 157
>gi|255984498|gb|ACU46321.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + Z + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEZLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+ D++
Sbjct: 143 GGNEQXDKLVSXGIR 157
>gi|255984156|gb|ACU46150.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAXNRETKLGKAGYVTDRGRQKVVSITDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + V L W+ H G
Sbjct: 595 VTDSQYAIGIIQXQPDKSE-------------SELVXQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GGNEQVDKLVSAGIRK 657
>gi|307108525|gb|EFN56765.1| hypothetical protein CHLNCDRAFT_144235 [Chlorella variabilis]
Length = 515
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 10/132 (7%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYK------GKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ YTDG+ + G GV+ + K + T EL+AA+ + A
Sbjct: 52 NVYTDGSKLTSGAIGA-GVITETGPGTAEQQEVKPDGHDLQLNTVPYAELVAALHGIAAA 110
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
++ D+S + K + +I + L+
Sbjct: 111 PPGAARHIFLDASTAMWLT---RMALHERVRTKKHKGILTHIVAQLCSRAMMQGTTFALH 167
Query: 124 WIKGHAGNQENE 135
++ H G NE
Sbjct: 168 KVRAHIGVLGNE 179
>gi|306477857|gb|ADM89303.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKCVSLTDTTNQKTELQAIYLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 543 GGNEQVDKL 551
>gi|328834227|gb|AEB52660.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGAANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SDIVSQIIEQLIKKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 699 GGNEQVDKL 707
>gi|288187789|gb|ADC42383.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+DS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VSDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|256011694|gb|ACU55703.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGXRK 713
>gi|308800666|ref|XP_003075114.1| exonuclease-like protein (ISS) [Ostreococcus tauri]
gi|116061668|emb|CAL52386.1| exonuclease-like protein (ISS) [Ostreococcus tauri]
Length = 428
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 14/141 (9%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DG G G GV Y + + + +N M A+ A
Sbjct: 26 HVDGGVELERGRSGVGVWYAYGHRLNYAASASGRSMDNNAVEMCAVYAAL---------S 76
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV---DLYWIKGH 128
D + S + TS ++ + + ++ H
Sbjct: 77 RHDGEAPLELRSDSRWVCKALERLTSGNVVGMRVNAVTIGAAFVLSQRTGGTIIQKVRAH 136
Query: 129 AG--NQENEKVDRIARNAAVS 147
G + +N + D++A S
Sbjct: 137 VGGNHTDNARADQLAAVGMRS 157
>gi|50897347|gb|AAT85798.1| GAG-POL protein, putative [Oryza sativa Japonica Group]
gi|108709085|gb|ABF96880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 403
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 232 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 289
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V ++ +E +
Sbjct: 290 GLRIAICLGIRRLIVRGDSQLVVNQVMKEWSC--PDDNMTAYRQEVHKLENKFDGLELT- 346
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 347 -----------HVLRHNNEAADRLAN 361
>gi|9759309|dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V TDGA GNPG G ++R + + + A + +
Sbjct: 516 VTMNTDGASHGNPGQATAGGVIRDEH-------------GSWLVGFALNIGVCSAPLAEL 562
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI--K 126
+Y + + ++ + ++ + F+ + WI
Sbjct: 563 WGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRI 622
Query: 127 GHAGNQENEKVDRIARNA 144
H + N D +A A
Sbjct: 623 THVYREANRLADGLANYA 640
>gi|255984006|gb|ACU46075.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGXIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSXGIR 656
>gi|332983014|ref|YP_004464455.1| ribonuclease H [Mahella australiensis 50-1 BON]
gi|332700692|gb|AEE97633.1| ribonuclease H [Mahella australiensis 50-1 BON]
Length = 287
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 10 HAYTDGACSGNPGPGGW-GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
DGAC+GNPG G GV+++ S + TNN E +A I AL + C
Sbjct: 18 TVNVDGACAGNPGLMGIGGVIVKSGETIHSFSEAKGFGTNNEAEYLAVITALEYMIPLCP 77
Query: 69 --VLLYTDSSYVHKGFSQWI 86
V++ +DS V +
Sbjct: 78 ESVIIISDSQLVVNQINGIY 97
>gi|256011780|gb|ACU55746.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +
Sbjct: 605 YVDGAANRETKLGKAGYVTDRGRQKIVSITDTTNQKTELQAILLALQ-----DSGLEXNX 659
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 660 VTDSQY-------------XLGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 706
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 707 GGNEQVDKLVSTGIRK 722
>gi|256011240|gb|ACU55476.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIQLALQ-----DSGPEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWXPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GGNEQVDKLVSAGIRK 717
>gi|255984272|gb|ACU46208.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEELIKKEKVYLAWXPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIRK 158
>gi|306477771|gb|ADM89260.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|289469898|gb|ADC96604.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGASNRETKLGRAGYVTBRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKXKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIRK 558
>gi|255984786|gb|ACU46465.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGXAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 143 GGNEQXDKLVSXGIRK 158
>gi|37677815|gb|AAQ97489.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEXLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGVRK 713
>gi|46109122|ref|XP_381619.1| hypothetical protein FG01443.1 [Gibberella zeae PH-1]
Length = 339
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 9 VHAYTDGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ YTDG+ GN PG G GV + N+ + AI +
Sbjct: 263 IRIYTDGSSLGNGKPGCSAGLGVFFGTGDMRNLSERLPGLPQTNQRAELLAILRAMEM 320
>gi|260533596|gb|ACX45009.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIYLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGVRK 713
>gi|256011374|gb|ACU55543.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + A++ +V +
Sbjct: 596 YVDGAANXETKLGKAGYXTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|226348690|gb|ACO50664.1| pol protein [Human immunodeficiency virus 1]
Length = 751
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 372 YVDGAANRETKLGQAGYVTDRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGLEVNI 426
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 427 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 473
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 474 GGNEQVDKLVSAGIRK 489
>gi|325638386|gb|ADZ35803.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKAYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIRK 716
>gi|289187238|gb|ADC92198.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELXAIHLALQ-----DSGXEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIR 656
>gi|8927259|gb|AAF82029.1|AF208027_2 pol protein [Human immunodeficiency virus 2]
Length = 1018
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A AL KV +
Sbjct: 606 YTDGSCNKTSKEGKAGYVTDRGKDKV---KVLEQTTNQQAELEAFAMALQDSGP--KVNI 660
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 661 IVDSQYVMGIIAGQPTETE-------------SPLVNKIIEEXIKKEXLYVGWVPAHKGI 707
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 708 GGNQEVDXLVSQGIRQ 723
>gi|289187215|gb|ADC92187.1| pol protein [Human immunodeficiency virus 1]
Length = 654
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRESKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|226933730|gb|ACO91919.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+KII+ E T N+ + AI+ +V
Sbjct: 595 YVDGAANRETKLGKAGY---ITDRGKQKIITIQE---TTNQKTELHAIQLALQDSG-SEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 648 NIVTDSQYAIGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLTWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++ +
Sbjct: 695 GVGGNEQXDKLVSSGIRK 712
>gi|93210983|gb|ABF00929.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ETTN + EL A AL +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVP---LTETTNQKTELHAIYLALQDSGP--EVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSEAEIVNQIIEKLIEKE-------------RVYLSWVPAHKGI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|289187254|gb|ADC92206.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANKETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIR 656
>gi|147678788|ref|YP_001213003.1| ribonuclease HI [Pelotomaculum thermopropionicum SI]
gi|146274885|dbj|BAF60634.1| ribonuclease HI [Pelotomaculum thermopropionicum SI]
Length = 138
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 21/151 (13%)
Query: 3 SKHLREVHAYTDGACS----GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ Y DG+ G P + R SG + EL A ++
Sbjct: 4 PDTMHTYTIYCDGSVLPHRQGKPSFAAFAA-CRGNTVVAEWSGRIEAVDVTAAELQAILE 62
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL + Q + ++ K +++ +
Sbjct: 63 ALQWAAGRRAKGV------------QVFTDSKAAVLTIQGRRLEKYMEILWQIRSLVKTL 110
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
K + W+ + N D + R AA ++
Sbjct: 111 KASVNWVP----REMNAYADGLCRKAARKYQ 137
>gi|288187947|gb|ADC42460.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIR 656
>gi|255984000|gb|ACU46072.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELHAIYLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|238734064|gb|ACR55313.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E ++ + +V
Sbjct: 596 YVDGAANIETKEGKAGY---VTDRGRQKVVSLTETTNPKTELQAIYL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAHPDKSESELVNQIIEQLIKKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 696 GIGGNEQIDKLVSAGVRK 713
>gi|226348666|gb|ACO50652.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 374 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 426
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + KV L W+ H
Sbjct: 427 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIELLIKKEKVYLAWVPAHK 473
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 474 GIGGNEQVDKLVSAGIRK 491
>gi|222151331|ref|YP_002560487.1| hypothetical protein MCCL_1084 [Macrococcus caseolyticus JCSC5402]
gi|222120456|dbj|BAH17791.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 129
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 37/134 (27%), Gaps = 13/134 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A +P G++ R+ + N+ E + I AL
Sbjct: 3 QVYIDAATRQDPLQSACGIIFRHDSDIVEYGEYLGDIDNHHAEWQSLIIALRLSLQNN-- 60
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y K + K +K I L V + WI
Sbjct: 61 -------YTSLLIKTDSKIVADSIHKKFVRKEAYKIYLQEYLALEPQFELVIIDWIP--- 110
Query: 130 GNQENEKVDRIARN 143
EN+ D IAR
Sbjct: 111 -RTENKHADTIARR 123
>gi|256011050|gb|ACU55381.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G +G++K++ + ++ + +V +
Sbjct: 600 YVDGAANRET-KMGKAGYXTNRGRQKVVPLTDTTNQKTELQAINL----ALQDSGSEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 702 GGNEQVDKLVSSGIR 716
>gi|212674635|gb|ACJ37060.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLGRAGY---VTDRGRQKXVSLTD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|25166741|gb|AAN73538.1|AF484489_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1026 YVDGAANRETKLGKAGYVTDRGRQKVVSLSDTTNQKTELQAINLALQ-----DSGLEVNI 1080
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1081 VTDSQYA-------------LGIIQAQPDKSESELVSQIVEQLIKKEKVYLSWVPAHKGI 1127
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ N
Sbjct: 1128 GGNEQVDKLVSNGIR 1142
>gi|288188184|gb|ADC42577.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|255708311|dbj|BAH96524.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|224048416|ref|XP_002195204.1| PREDICTED: similar to Gag-Pro-Pol-Env protein [Taeniopygia guttata]
Length = 1158
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 16/143 (11%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 681 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 735
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 736 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 791
Query: 129 AGN-----QENEKVDRIARNAAV 146
+ N + D +A AA
Sbjct: 792 TDLPGAIAEGNRRADHLA--AAR 812
>gi|255708301|dbj|BAH96515.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|222428320|gb|ACM49986.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
N+KVD++ N
Sbjct: 698 GGNKKVDKLVSNGIR 712
>gi|49574238|gb|AAT66792.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+ DGA + G G + ++ + + A++ +V +
Sbjct: 441 FVDGAANRETKLGKAGSVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESGIVNQIIEQLVKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|60651907|gb|AAX32994.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQNVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSPYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|182418430|ref|ZP_02949724.1| ribonuclease HI [Clostridium butyricum 5521]
gi|237666445|ref|ZP_04526430.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377812|gb|EDT75356.1| ribonuclease HI [Clostridium butyricum 5521]
gi|237657644|gb|EEP55199.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 320
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 9 VHAYTDGACSGNPGPGGWGVL------LRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+HAY DG+ S + G +GV+ + Y EK EL A++A
Sbjct: 75 LHAYVDGSYSVSDGRYAYGVVCVKNNIVEYVENGAEKDTSEKNIRQIAGELKGALRAALY 134
Query: 63 --LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
K KV+++ D + + S + ++
Sbjct: 135 ALDKGEKKVVIFHDYEGIANHATGAW----------SRNEQSSVEYHRQMQELMKNGLEI 184
Query: 121 DLYWIKGHAGNQENEKVDR 139
+ H G+ NE VD
Sbjct: 185 IFVKVDSHTGDLFNELVDE 203
>gi|39970171|ref|XP_366476.1| hypothetical protein MGG_02552 [Magnaporthe oryzae 70-15]
gi|145017671|gb|EDK02034.1| hypothetical protein MGG_02552 [Magnaporthe oryzae 70-15]
Length = 222
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
W GH G N++ D +A+
Sbjct: 4 RWCPGHQGIPGNDRADELAKAG 25
>gi|289187335|gb|ADC92246.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNXGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|226348498|gb|ACO50568.1| pol protein [Human immunodeficiency virus 1]
Length = 744
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 373 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 425
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 426 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLAWVPAHK 472
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ N
Sbjct: 473 GIGGNEQIDKLVSNGIRK 490
>gi|170778871|gb|ACB36835.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDXGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSDSELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVSF 148
NE++D++
Sbjct: 543 GGNEQIDKLVSAGVRRI 559
>gi|157737704|ref|YP_001490387.1| ribonuclease H-like protein [Arcobacter butzleri RM4018]
gi|157699558|gb|ABV67718.1| ribonuclease H-like protein [Arcobacter butzleri RM4018]
Length = 159
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 6 LREVHAYTDGACSGNP-GPGGWGVLL-------RYKGKEKIISGGEKETTNNRMELMAAI 57
++++ + D S NP G+G L K+ I +T++ ++EL + +
Sbjct: 1 MKKIKLFVD--SSVNPQAKVGFGAFLEVFDDLSIDDLKKNIKIKRFDDTSSTKLELQSLL 58
Query: 58 KALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
AL ++ K+ +YTD + ++ +K + N +K+S KT+ N +L+ F +
Sbjct: 59 WALDEIEMLADTKIEVYTDCQNIVGLQNRK-EKLEANDYKSSTGKTINNYELYKLFFKKI 117
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRI 140
+ +D IKGH ++N D +
Sbjct: 118 EKLNIDFIKIKGH---KKNSLKDEL 139
>gi|294992466|gb|ACU55388.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVXTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ +K + L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDISESELVNKIIEQLIKKEKXY-------------LAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSKGIR 712
>gi|255984106|gb|ACU46125.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + K+ L W+ H
Sbjct: 593 NIVTDSQYALGIIQSQPDSSE-------------SXLVNQIIEQLIKKEKIYLAWVPAHK 639
Query: 130 GNQENEKVDRI 140
G NE+VD++
Sbjct: 640 GIGGNEQVDKL 650
>gi|117581802|gb|ABK41333.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + +A++ +V +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYSALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W H G
Sbjct: 651 VTDSQYALGIIQAQPDRSE-------------SEIVNQIIEELIRKDKVYLSWAPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|77416886|sp|P12497|POL_HV1N5 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1083 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 1130 GGNEQVDGLVSAGIRK 1145
>gi|302680230|ref|XP_003029797.1| hypothetical protein SCHCODRAFT_111500 [Schizophyllum commune H4-8]
gi|300103487|gb|EFI94894.1| hypothetical protein SCHCODRAFT_111500 [Schizophyllum commune H4-8]
Length = 274
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ F+ + + W+ H G N + ++A+
Sbjct: 206 NRMYGFLRGDPSRSILVEWVPAHCGIPGNARAHQLAKA 243
>gi|283470646|emb|CAQ49857.1| cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus ST398]
Length = 133
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG V+++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAVVIKEDEQHFTYTHELGEMDNHTAEWAACIYALKHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEQDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|224178823|ref|XP_002198426.1| PREDICTED: similar to Gag-Pro-Pol-Env protein, partial [Taeniopygia
guttata]
Length = 1556
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1164 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1218
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1219 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1274
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1275 TDLPGAIAEGNRRADHLA 1292
>gi|224178717|ref|XP_002195234.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 916
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 352 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 406
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 407 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 462
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 463 TDLPGAIAEGNRRADHLA 480
>gi|224172001|ref|XP_002199055.1| PREDICTED: similar to Gag-Pro-Pol-Env protein, partial [Taeniopygia
guttata]
Length = 1582
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1117 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1171
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1172 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1227
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1228 TDLPGAIAEGNRRADHLA 1245
>gi|224167236|ref|XP_002198925.1| PREDICTED: similar to Gag-Pro-Pol-Env protein [Taeniopygia guttata]
Length = 2293
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1117 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1171
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1172 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1227
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1228 TDLPGAIAEGNRRADHLA 1245
>gi|224162113|ref|XP_002199002.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 1345
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 712 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 766
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 767 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 822
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 823 TDLPGAIAEGNRRADHLA 840
>gi|224149732|ref|XP_002198585.1| PREDICTED: similar to pol/env ORF (bases 3878-8257) first start
codon at 4172; Xxx; putative, partial [Taeniopygia
guttata]
Length = 696
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 365 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 419
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 420 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 475
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 476 TDLPGAIAEGNRRADHLA 493
>gi|224147917|ref|XP_002196886.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 934
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 435 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 489
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 490 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 545
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 546 TDLPGAIAEGNRRADHLA 563
>gi|224093452|ref|XP_002188090.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 750
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 251 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 305
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 306 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 361
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 362 TDLPGAIAEGNRRADHLA 379
>gi|224090835|ref|XP_002186649.1| PREDICTED: similar to Gag-Pro-Pol-Env protein [Taeniopygia guttata]
Length = 1196
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 698 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 752
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 753 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 808
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 809 TDLPGAIAEGNRRADHLA 826
>gi|224089535|ref|XP_002190382.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 745
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 247 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 301
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 302 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 357
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 358 TDLPGAIAEGNRRADHLA 375
>gi|224049970|ref|XP_002188867.1| PREDICTED: similar to Gag-Pro-Pol-Env protein [Taeniopygia guttata]
Length = 1360
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1164 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1218
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1219 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1274
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1275 TDLPGAIAEGNRRADHLA 1292
>gi|224046902|ref|XP_002191900.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 1662
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1077 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1131
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1132 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1187
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1188 TDLPGAIAEGNRRADHLA 1205
>gi|224046900|ref|XP_002191847.1| PREDICTED: similar to Gag-Pro-Pol protein, partial [Taeniopygia
guttata]
Length = 1474
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 994 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1048
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1049 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 1104
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1105 TDLPGAIAEGNRRADHLA 1122
>gi|328834130|gb|AEB52574.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSRYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|306478249|gb|ADM89499.1| pol protein [Human immunodeficiency virus 1]
Length = 710
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + K + + +TTN + EL A + AL +V +
Sbjct: 303 YVDGAANRESKLGKAGYV---TNKGRQKAVSLTDTTNQQTELQAILLALQDSGV--EVNI 357
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 358 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 404
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 405 GGNEQVDKLVSSGVRK 420
>gi|289469890|gb|ADC96600.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQQTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIR 557
>gi|289187264|gb|ADC92211.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKXGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKXYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|256011504|gb|ACU55608.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ I + A++ V +
Sbjct: 596 YVDGAXXRETKLGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGLXVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDQSE-------------SELVNQIIEELIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|22596233|gb|AAN03025.1|AF457052_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ +R T +
Sbjct: 596 YVDGAAHRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ +
Sbjct: 696 GIGGNEQVDKLVSSGIR 712
>gi|255984854|gb|ACU46499.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRESKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|255984636|gb|ACU46390.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +G++K++S E T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGKAGY---XTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + + + + + V L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDRSDSXLVNQIIEKLIGKEXVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 141 GIGGNEQVDKLVSSGIRK 158
>gi|87137451|gb|ABD27941.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +G++KI S ++TTN R EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTDRGRQKIHS--LEDTTNQRAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SEIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|289187268|gb|ADC92213.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKAELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIR 656
>gi|288187726|gb|ADC42354.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984852|gb|ACU46498.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG + G G + ++ I + A++ +V +
Sbjct: 41 YVDGXANRETKLGKAGYVTDRGRQKVISLNDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|255984806|gb|ACU46475.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYXTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYAJGII-------------QAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|116518633|gb|ABJ99522.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ NR T +
Sbjct: 595 YVDGAANRETKLEKAGY--------------------VTNRGRQKVVSLTDTTNQKTELQ 634
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV + W+ H
Sbjct: 635 AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYMAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSAGIRKI 713
>gi|113205274|gb|ABI34321.1| RNase H family protein [Solanum demissum]
Length = 945
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
++ ++ V TDG+ S G G G ++R + I++ + ++ A
Sbjct: 748 NTPNINCVKINTDGSFSS--GNAGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFG 805
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L + K ++ Q K + E +
Sbjct: 806 ILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLKIKGVVEDIIQVVAKMNCEVN------ 859
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVS 147
H + N+ D +A++A +S
Sbjct: 860 ------HCYREANQVADALAKHAVIS 879
>gi|17046763|gb|AAL34779.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G + ++ + + A++ +V +
Sbjct: 592 YVDGAAHRETKVEKAGYVTDRGRQKIVNLTETTNQKTELQAIQLALQ-----DSGSEVNI 646
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 647 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 693
Query: 132 QENEKVDRIARNAAVS 147
ENE+VD++ +
Sbjct: 694 GENEQVDKLVSSGIRK 709
>gi|255984270|gb|ACU46207.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETXLGKAGYVTBRGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSXGIR 157
>gi|37221408|gb|AAQ89833.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLXKAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSAGIRK 657
>gi|256011180|gb|ACU55446.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R T +
Sbjct: 594 YVDGAASRETKLGKAGY--------------------VTDRGXQKVVSLTETTNQKTELH 633
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + G + ++ + + KV L W+ H
Sbjct: 634 AIQLAXQDSGSEVNIVTXSQYALGIIQAQPDRSESXXVNQIIEXLIKKEKVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSXGIR 710
>gi|255984268|gb|ACU46206.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVAITDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 96 VTDSQYALGII--------------QAQPDKSESEJVSQIIEQLIKKEKVYLAWVPAHKG 141
Query: 131 NQENEKVDRIARNAAVS 147
NE++D++
Sbjct: 142 IGGNEQIDKLVSAGIRK 158
>gi|145616864|ref|XP_369689.2| hypothetical protein MGG_05775 [Magnaporthe oryzae 70-15]
gi|145022620|gb|EDK06536.1| hypothetical protein MGG_05775 [Magnaporthe oryzae 70-15]
Length = 249
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
+W GH G N++ D +A+
Sbjct: 31 FWCPGHQGIPGNDRADELAKAG 52
>gi|242797117|ref|XP_002482947.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218719535|gb|EED18955.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 482
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + + + W+ GH ENE D A+
Sbjct: 311 WPLRERLPHTKNGSIQIRWVPGHTKIPENEAADFAAKEG 349
>gi|228483801|gb|ACQ42713.1| pol protein [Human immunodeficiency virus 1]
Length = 711
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 22/136 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + G++K++S +TTN + EL A AL +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDGGRQKVVS--LTDTTNQKTELQAIYLALQDSG--SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + +V L W+ H
Sbjct: 649 NIVTDSPYA-------------LGIIQAQPDKSESEIVSQIIEQLINKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAA 145
G NE+VD++ N
Sbjct: 696 GIGGNEQVDKLVSNGI 711
>gi|312601987|gb|ADQ92549.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGKQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 657 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 704 GGNEQIDKLVSTGIRK 719
>gi|256011228|gb|ACU55470.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGNVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|255984070|gb|ACU46107.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 540 YVDGAANRETKIGKAGYVTDRGRQKVXSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 595 VTDSQY-------------XLGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSXGIR 656
>gi|226348714|gb|ACO50676.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGQAGYVTDRGRQKVVALTDTTNQKTELQAIHLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 475
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 476 GGNEQVDKLVSSGIRK 491
>gi|330684984|gb|EGG96659.1| EbsB family protein [Staphylococcus epidermidis VCU121]
Length = 132
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG V+++ + + + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGRSTCAVVIKEEDQHHVFTHDLGEMDNHSAEWAACIHALEHARE 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ S + + K ++ + + W+
Sbjct: 59 LKVNNALLYTDSKLIADSVEAGYVK-----NAKFKPYFEQLEILEQD----FDLLFVKWV 109
Query: 126 KGHAGNQENEKVDRIARNA 144
++N++ ++ A+ A
Sbjct: 110 P----REQNKEANQHAQQA 124
>gi|289469884|gb|ADC96597.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKXYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 543 GGNEQVDKLVSSGIRK 558
>gi|256010717|gb|ACU55215.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K +S + T N+ + AI +V
Sbjct: 594 YVDGAANRETKLGRAGY---VTDRGRQKAVSLTD---TTNQKTELQAIHLALQDSGL-EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + E + KV L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVSXIIEELIKKEKVYLAWVPAHK 693
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSAGIR 710
>gi|227487602|ref|ZP_03917918.1| hypothetical protein HMPREF0294_0752 [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092420|gb|EEI27732.1| hypothetical protein HMPREF0294_0752 [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 264
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 41/142 (28%)
Query: 2 DSKHLREVHAYTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ R++ TD + GN ++ Y + I + A+
Sbjct: 115 RPRQRRDIVVATDASLARGNT-RAAIAMISTYGKVQTRIRRVAGINEAELHAVQLAV--- 170
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + TDS Y F + V
Sbjct: 171 -------NLHILTDSRYAFTTFECPPTTAK-----------------------------V 194
Query: 121 DLYWIKGHAGNQENEKVDRIAR 142
L+W++GH GN N DR AR
Sbjct: 195 HLHWVRGHNGNVLNGLADRAAR 216
>gi|6910969|gb|AAF31320.1|AF146728_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLSDTTNQKTELQAIQLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N+KVD +
Sbjct: 698 GGNDKVDSLVSAGIRK 713
>gi|15920984|ref|NP_376653.1| hypothetical protein ST0753 [Sulfolobus tokodaii str. 7]
gi|158428359|pdb|2EHG|A Chain A, Crystal Structure Of Hyperthermophilic Archaeal Rnase Hi
gi|15621768|dbj|BAB65762.1| 149aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 149
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 26/149 (17%)
Query: 12 YTDGACSG-NPG-PGGWGVLLR--------YKGKEKIISGGEKETTNNRMELMAAIKALT 61
Y DG C NPG +G ++ Y EK S L+ ++ +
Sbjct: 5 YFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETML 64
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L + + DS V K + K + I L+ K +E +
Sbjct: 65 RLGISSPI-IKGDSQLVIKQMNGEY-----------KVKAKRIIPLYEKAIELKKKLNAT 112
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFKN 150
L W+ +EN++ DR++R A +
Sbjct: 113 LIWVP----REENKEADRLSRVAYELVRR 137
>gi|295314220|gb|ADF97464.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G G + +G++K +S E ++ + KV +
Sbjct: 596 YVDGASNRDTKKGKAGYV-TDRGRQKAVSLTETTNQKAELQAIGL----ALQDSGSKVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N++V+++ N
Sbjct: 698 GGNKQVNKLVSNGIRK 713
>gi|289187284|gb|ADC92221.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKAELQAIHLALQ-----DSXVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIR 656
>gi|262165108|ref|ZP_06032845.1| ribonuclease H [Vibrio mimicus VM223]
gi|262024824|gb|EEY43492.1| ribonuclease H [Vibrio mimicus VM223]
Length = 42
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V + + GH+G + NE DR+A AA
Sbjct: 13 VSVEHVAGHSGIKGNEHSDRLASQAA 38
>gi|255984538|gb|ACU46341.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGRAGYVTNRGRQKVVSLTDTTNQKTELQAIQLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDXSESELVNQIIEELIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 143 GGNEQIDKLVSAGIRK 158
>gi|77555695|gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
L V TDGA S N GGWG +++ + + +G +
Sbjct: 1459 RRPPLNFVKINTDGAYSSNMKQGGWGFVIKDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 1518
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A+K + + S + S ++ Q+ +++ + V
Sbjct: 1519 AIKTASERGM---SRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVS 1575
Query: 122 LYWIKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 1576 Y------SPRSCNKVAHELA 1589
>gi|251831289|gb|ACT21557.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGASNRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + KV L W+ H
Sbjct: 636 AIYLALQDSGTEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEKLIEKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G N +VD++ +
Sbjct: 696 GIGGNXQVDKLVSSGIRK 713
>gi|51854462|gb|AAU10841.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1528
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 17/147 (11%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIK 58
D + + + Y DG+ S G +L + + + +TTNN E A +
Sbjct: 1069 DPEPVEQPWVMYFDGSWSHRG--AGIAAVLTSPNGAPIRYAARLQFDTTNNAAEYEAILL 1126
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L K L + + + V++++ +
Sbjct: 1127 GLRKAKALGVRCLLIRTDSKLVAGHIDKSFEAKEEGMKKYLEAVQSMEKCFTGITVE--- 1183
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAA 145
H +NE+ D +A++AA
Sbjct: 1184 ---------HLPRGQNEEADALAKSAA 1201
>gi|36365435|gb|AAQ86651.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ + +G++K++S +TTN + EL A + AL +V
Sbjct: 595 YVDGAANRETKLEKAGY---VTNRGRQKVVS--LTDTTNQKTELQAILLALQDSGL--EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K+ L W+ H
Sbjct: 648 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKKKIYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 695 GIGGNEQVDKLVSNGIRKI 713
>gi|31559690|dbj|BAC77511.1| Gag-Pol fusion protein [Human immunodeficiency virus 1]
Length = 1438
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + ++ A++ +V +
Sbjct: 1031 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQ-----DSGVEVNI 1085
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1086 VTDSQYA-------------LGIIQAQPGKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1132
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 1133 GGNEQIDKL 1141
>gi|288187799|gb|ADC42388.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIRK 657
>gi|255984116|gb|ACU46130.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 540 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 592
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + K+ L W+ H
Sbjct: 593 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHK 639
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 640 GIGGNEQVDKLVSTGIR 656
>gi|13095431|gb|AAK12270.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + K L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKAYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|130634|sp|P04026|POL_IPHA RecName: Full=Putative Pol polyprotein; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
Contains: RecName: Full=Integrase; Short=IN
Length = 863
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 21/144 (14%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+ G G + K+++IS ET+ +E + ++ L +P +
Sbjct: 413 VVYTDGS------KTGLGAYVV---KDRVISKQYNETSPQVVECLIVLEVLE--AFPGPL 461
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ +DSSYV + + G S + + + + V + ++ H+
Sbjct: 462 NIVSDSSYVVNAVN----LLEIAGIIRSSSRVANIFQKIQAAL-LNRRFPVFITHVRAHS 516
Query: 130 GNQ-----ENEKVDRIARNAAVSF 148
G N+ D+ + A +
Sbjct: 517 GLPGPMSLGNDLADKATKLVATAL 540
>gi|255984898|gb|ACU46521.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 24/139 (17%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + ++ + +V
Sbjct: 41 YVDGAANRETKLGKAGY---VTNRGRQKVVSITDTTNQKTELQAINL----ALQDSGSEV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGH 128
+ TDS Y + +J + +E + KV L W+ H
Sbjct: 94 NIVTDSQYALGII--------------QAQPDXSESEJVSQIIEQLIKKEKVYLAWVPAH 139
Query: 129 AGNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 140 KGIGGNEQXDKLVSXGIRK 158
>gi|126360750|gb|ABO09896.1| pol protein [Simian immunodeficiency virus]
Length = 661
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + + + TTN + EL A + ALT +
Sbjct: 361 YVDGAANRTSKLGRAGY-----VTDRGQEKAIDLENTTNQKAELQAILMALTDGPPKMNI 415
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS Y + + + + + + + + L W+ H
Sbjct: 416 --VTDSQYALGIITTAPETSE-------------SPLVEKIIQQLLTKEAIYLSWVPAHK 460
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD +
Sbjct: 461 GIGGNQEVDHLVSKGIRQ 478
>gi|62822735|gb|AAY15131.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 534
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A ALT KV +
Sbjct: 423 YTDGSCNRQSKEGKAGYITDRGRDKV---RVLEQTTNQQAELEAFAMALTDSGP--KVNI 477
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 478 IVDSQYVMGIVAGQPTESE-------------SKIVNQIIEEMIKKEALYVAWVPAHKGI 524
Query: 132 QENEKVDRI 140
N++VD +
Sbjct: 525 GGNQEVDHL 533
>gi|71016881|ref|XP_758934.1| hypothetical protein UM02787.1 [Ustilago maydis 521]
gi|46098465|gb|EAK83698.1| predicted protein [Ustilago maydis 521]
Length = 118
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V + W+ GH G N++ D A+NAA
Sbjct: 8 RRVTVVWVPGHRGFPGNKRADYAAQNAAD 36
>gi|288187598|gb|ADC42292.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|170037640|ref|XP_001846664.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880948|gb|EDS44331.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 180
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 9 VHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
V+ YTDG+ GN G GV +SG AI+
Sbjct: 63 VYVYTDGSWEGNGTAAACAGLGVYFGEGHTLNAVSGRATNNCREFQAAALAIRLAKQQGI 122
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V D + + + K + + +T +++T ++ V + W
Sbjct: 123 --TVKNQVDVEELDRELADKSIKIKWSHVETLNRETGLSLLNRSGNVCFELGNTDKFCW 179
>gi|306477895|gb|ADM89322.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKERIYLTWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
N++VD++
Sbjct: 543 GGNKQVDKLVSAGIR 557
>gi|289469913|gb|ADC96611.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQRVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|256011186|gb|ACU55449.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 596 YVDGAANXETKLGKAGYVTNXGRXKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIRK 713
>gi|255984784|gb|ACU46464.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELHAINLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGVRK 158
>gi|255984148|gb|ACU46146.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 20/136 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGSEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAG 130
TDS Y + +J + +E + KV L W+ H G
Sbjct: 595 VTDSQYALGII--------------QAQPDKSESEJVNQIIEQLIKKEKVYLAWVPAHKG 640
Query: 131 NQENEKVDRIARNAAV 146
NE+VD++
Sbjct: 641 IGGNEQVDKLVSTGIR 656
>gi|22596294|gb|AAN03079.1|AF457059_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG + G G+ + +G++K+IS + ++ + +V
Sbjct: 595 YVDGGANRETKLGKAGY---VTDRGRQKVISLTDTTNQKTELQAINL----ALQDSGLEV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + ++ + + + KV L W+ H
Sbjct: 648 NIVTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 694
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSKGVR 711
>gi|49574270|gb|AAT66806.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 13 TDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 442 VDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EVN 494
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS Y G + ++ + + + KV L W+ H G
Sbjct: 495 IVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKG 541
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 IGGNEQVDKLVSSGIRK 558
>gi|49574268|gb|AAT66805.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 13 TDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 442 VDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EVN 494
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS Y G + ++ + + + KV L W+ H G
Sbjct: 495 IVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKG 541
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 IGGNEQVDKLVSSGIRK 558
>gi|86148658|ref|ZP_01066938.1| hypothetical ribonuclease HI [Vibrio sp. MED222]
gi|85833539|gb|EAQ51717.1| hypothetical ribonuclease HI [Vibrio sp. MED222]
Length = 118
Score = 41.8 bits (96), Expect = 0.028, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI 38
++ +TDGAC NPG G G+ + +
Sbjct: 88 DIKIFTDGACEPNPGEAGTGLAVYQNNQLTE 118
>gi|289469808|gb|ADC96559.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKJGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|288558565|dbj|BAI68339.1| polyprotein [Human immunodeficiency virus 1]
Length = 327
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 191 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 243
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y Q SD + V I + E KV L W+ H
Sbjct: 244 NIVTDSQYA--------LGIIQAQPDRSDSEVVNQIIEGLIKKE-----KVYLSWLPAHK 290
Query: 130 GNQENEKVDRIARNAAVS 147
G NEKVD++ +
Sbjct: 291 GIGGNEKVDKLVSSGIRK 308
>gi|157885657|gb|ABV91578.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYITNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGVRK 713
>gi|30038315|gb|AAP12628.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 597 YVDGASNKETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 651
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 652 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLINKEKVYLAWVPAHKGI 698
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 699 GGNEQIDKL 707
>gi|256010809|gb|ACU55261.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALE------------- 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ SQ+ Q S+ + V I + E KV L W+ H G
Sbjct: 643 DSGLEVNIVTXSQYALGIIQAQPDKSESELVSQIIEQLIKKE-----KVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|126272506|ref|XP_001379802.1| PREDICTED: similar to pol protein [Monodelphis domestica]
Length = 755
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 8 EVHAYTDGAC-SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ + DG+ N ++ G+ + K T+ + +L A +AL +
Sbjct: 287 DLILFMDGSSFLENGHHLPGAAVVNAAGETVWATALPKGTSAQKSDLFAPTQALRKAEGK 346
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWI 125
+Y DS Y +Q+ G+ TS V N+ F+ V + +
Sbjct: 347 RA-TIYRDSRYAFATLHVHAPVYQERGFVTSGGVPVYNLPELQNFLPAVWKPKAVTMVHV 405
Query: 126 KGHA-GN----QENEKVDRIARNAAV 146
GH G+ Q N D +A+ AA
Sbjct: 406 LGHQKGDSSEAQGNRLADWVAKLAAR 431
>gi|119191229|ref|XP_001246221.1| hypothetical protein CIMG_05662 [Coccidioides immitis RS]
Length = 162
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 31/159 (19%)
Query: 8 EVHAYTDGACSGNPGPGGWG-------VLLRYKGKEKIISGGE---KETTNNRMELMAAI 57
+ Y DG C N G+ +L+Y+ E TN R E+ A I
Sbjct: 4 RMEIYVDGGCRYN----GYSNAIAAAAAVLQYRWGNNYEYRTCQVSGEATNQRAEITAII 59
Query: 58 KALTA---------LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
L V +Y+DS Y ++WI KW NGW S + V N DL
Sbjct: 60 LGLQMALDRYKELDTSPSIDVTIYSDSRYAIGCMTKWIYKWSNNGWTNSRGEEVANRDLI 119
Query: 109 MK----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ + V WI ++N+ D+
Sbjct: 120 QEASDLDDDVQDLGSVTYRWIP----REDNDLADKHCNE 154
>gi|49574266|gb|AAT66804.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 13 TDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 442 VDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EVN 494
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS Y G + ++ + + + KV L W+ H G
Sbjct: 495 IVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKG 541
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 IGGNEQVDKLVSSGIRK 558
>gi|19072104|dbj|BAB85751.1| Gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1434
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1027 YVDGAANRETKSGKAGYVTDRGRQKVVPIADTTNQKTELQAIHLALQ-----DSGLEVNI 1081
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1082 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVLAHKGI 1128
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 1129 GGNEQVDKLVSTGIRK 1144
>gi|256011134|gb|ACU55423.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG S G G + ++ I + A++ +V +
Sbjct: 599 YVDGXASRETKEGKAGYVTNRGRQKVIPLTDTTNQKTELHAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|18699120|gb|AAL78397.1|AF413970_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 182 YVDGAANRETKTGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQ-----DSGSEVNI 236
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 237 VTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKE-------------RVYLSWVPAHKGI 283
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 284 GGNEQVDKL 292
>gi|49574290|gb|AAT66816.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 13 TDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 442 VDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EVN 494
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS Y G + ++ + + KV L W+ H G
Sbjct: 495 IVTDSQYA-------------LGIIQAQPDKSESELVSQVIERLIKKEKVYLTWVPAHKG 541
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 IGGNEQVDKLVSSGIRK 558
>gi|289187236|gb|ADC92197.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESEXVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|303315623|ref|XP_003067819.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240107489|gb|EER25674.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|320031440|gb|EFW13404.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 162
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 31/159 (19%)
Query: 8 EVHAYTDGACSGNPGPGGWG-------VLLRYKGKEKIISGGE---KETTNNRMELMAAI 57
+ Y DG C N G+ +L+Y+ + TN R E+ A I
Sbjct: 4 RMEIYVDGGCRYN----GYSNAIAAAAAVLQYRWGNNYKYRTCQVSGDATNQRAEITAII 59
Query: 58 KALTALKYPC---------KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLW 108
L V +Y+DS Y ++WI KW NGW S + V N DL
Sbjct: 60 LGLQMALDRYEELDTSPSIDVTIYSDSRYAIGCMTEWIYKWSNNGWTNSRGEEVANRDLI 119
Query: 109 MK----FVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ + V WI ++N+ D+
Sbjct: 120 QEASDLDDDVQDLGSVTYRWIP----REDNDLADKHCNE 154
>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]
Length = 492
Score = 41.8 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 39/140 (27%), Gaps = 18/140 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIKALTA--LKYP 66
DGA GNPG G +L+ + I G TNN E I L +
Sbjct: 161 IEFDGASKGNPGLSGAAAVLKTEDGSLICKVRQGLGIATNNAAEYHGLILGLKHAIERGY 220
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K+ + DS + Q KW+ N S +
Sbjct: 221 KKIKVKGDSKLICM---QIKGKWKVNNEVLSKLHEEAKQLTNEC---------ISFE--I 266
Query: 127 GHAGNQENEKVDRIARNAAV 146
H N D A A
Sbjct: 267 SHVLRNLNSAADEQANLAVR 286
>gi|256011558|gb|ACU55635.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVPLTXTTNQKTELQAINLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEXVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIR 712
>gi|256011274|gb|ACU55493.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 595 YVDGAANRETKLGRAGY---VTDRGRQKVVS--LTDTTNQKTELQAIYLALQDSGL--EV 647
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + ++ L W+ H
Sbjct: 648 NIVTDSQYAXXXXXXXXXX-------------XXSELVNQIIEQLINKERIYLTWVPAHK 694
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 695 GIGGNEQVDKLVSAGIRK 712
>gi|55251106|emb|CAH68964.1| novel protein similar to vertebrate ribonuclease H1 (RNASEH1)
[Danio rerio]
Length = 160
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 9 VHAYTDGACSGNPG---PGGWGVLLRYKGKE 36
V YTDG CSGN G GV
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPR 160
>gi|306478057|gb|ADM89403.1| pol protein [Human immunodeficiency virus 1]
gi|306478061|gb|ADM89405.1| pol protein [Human immunodeficiency virus 1]
gi|306478067|gb|ADM89408.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R A T +
Sbjct: 441 YVDGAANRETKLGRAGY--------------------VTDRGRQKAVSLTDTTNQKTELQ 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 481 AIYLALQDSGLKVNIVTDSQYALGIIQAQPDRSESELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 541 GIGGNEQVDKLVSAGIRK 558
>gi|288187728|gb|ADC42355.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 642 GGNEQIDKLVSSGIRK 657
>gi|224154339|ref|XP_002191518.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 950
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 454 LTVFTDGS-----GRSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 508
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 509 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 564
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 565 TDLPGAIAEGNRRADHLA 582
>gi|242797659|ref|XP_002483006.1| hypothetical protein TSTA_008970 [Talaromyces stipitatus ATCC
10500]
gi|218716351|gb|EED15772.1| hypothetical protein TSTA_008970 [Talaromyces stipitatus ATCC
10500]
Length = 533
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + + W+ GHA EN D A+ A S
Sbjct: 442 WPLRERLPHTKSGSIRIRWVPGHAKIPENGAADLAAKEGAASI 484
>gi|255984500|gb|ACU46322.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|227541314|ref|ZP_03971363.1| hypothetical protein HMPREF0293_0633 [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182865|gb|EEI63837.1| hypothetical protein HMPREF0293_0633 [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 272
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 31/141 (21%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
+ R++ TD + + ++ Y + I + A+
Sbjct: 115 RPRQRRDIVVATDASLARGGTRAAIAMISTYGKVQTRIRRVTGINEAELHAVQLAVAEYG 174
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ + TDS Y F + V
Sbjct: 175 KRAV--NLHILTDSRYAFTTFECPPTTAK-----------------------------VH 203
Query: 122 LYWIKGHAGNQENEKVDRIAR 142
L+W++GH GN N DR AR
Sbjct: 204 LHWVRGHNGNVLNGLADRAAR 224
>gi|126643676|gb|ABO25842.1| gag-pro-pol polyprotein [Walleye dermal sarcoma virus]
Length = 1751
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ + G GG V++ R + II + + + + A+ A L
Sbjct: 1224 DMTLFSDGSYT--TGRGGAAVVMHRPVTDDFIIIHQQPGGASAQTAELLALAAACHLATD 1281
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWI 125
V +YTDS Y + + W G+ TS +KN ++ +V + I
Sbjct: 1282 KTVNIYTDSRYAYGVVHDFGHLWMHRGFVTSAGTPIKNHKEIEYLLKQIMKPKQVSVIKI 1341
Query: 126 KGHA 129
+ H
Sbjct: 1342 EAHT 1345
>gi|87137455|gb|ABD27943.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +GK+KI S ++TTN R EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTNRGKQKIHS--LEDTTNQRAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SDIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|14530255|gb|AAK65986.1|AF286239_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELHAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 651 VTDSQYALGIIQAQPDRSESEIVNLIIEKLIEKE-------------RVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
ENE+VD++ +
Sbjct: 698 GENEQVDKLVSSGIRK 713
>gi|9629908|ref|NP_045937.1| Pr gag-pro-pol [Walleye dermal sarcoma virus]
gi|2801525|gb|AAC82611.1| Pr gag-pro-pol [Walleye dermal sarcoma virus]
Length = 1751
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLL-RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
++ ++DG+ + G GG V++ R + II + + + + A+ A L
Sbjct: 1224 DMTLFSDGSYT--TGRGGAAVVMHRPVTDDFIIIHQQPGGASAQTAELLALAAACHLATD 1281
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWI 125
V +YTDS Y + + W G+ TS +KN ++ +V + I
Sbjct: 1282 KTVNIYTDSRYAYGVVHDFGHLWMHRGFVTSAGTPIKNHKEIEYLLKQIMKPKQVSVIKI 1341
Query: 126 KGHA 129
+ H
Sbjct: 1342 EAHT 1345
>gi|71148676|gb|AAZ28934.1| polyprotein [Phanerochaete chrysosporium RP-78]
Length = 1121
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 10 HAYTDGACSGNPG-------PGGWGVLLR---YKGKEKIISGGEKE-TTNNRMELMAAIK 58
++DG+ G +L + S + M A+
Sbjct: 601 VVFSDGSSLKARTAKRPYRVKTGAAYVLLTTDDHMNRQTRSRAIGCGQVSPYDAEMMALY 660
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L + + S + +V K++E A+
Sbjct: 661 MGILAACRTNTLQAKTIHVFADNKAAITGILKPTASGPSQRLSVLTCQAVRKWLEDDAER 720
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+W GH G NE D A+ AA +
Sbjct: 721 TFHTHWCPGHVGIDLNETADIEAKAAAKEY 750
>gi|60418832|gb|AAX19843.1| HIV SAVINE 2 [synthetic construct]
Length = 1887
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 101 TVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + +V L W+ H G NE+VD++
Sbjct: 1385 KNWMTETLLVQNANPDCERVYLAWVPAHKGIGGNEQVDKLVSAGIRK 1431
>gi|49483624|ref|YP_040848.1| hypothetical protein SAR1446 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425497|ref|ZP_05601922.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428157|ref|ZP_05604555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430788|ref|ZP_05607170.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433547|ref|ZP_05609905.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436388|ref|ZP_05612435.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904015|ref|ZP_06311903.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
C160]
gi|282905780|ref|ZP_06313635.1| ribonuclease HI [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908750|ref|ZP_06316568.1| ribonuclease HI [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911013|ref|ZP_06318815.1| ribonuclease HI [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914223|ref|ZP_06322010.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
M899]
gi|282919145|ref|ZP_06326880.1| ribonuclease HI [Staphylococcus aureus subsp. aureus C427]
gi|282924328|ref|ZP_06332002.1| ribonuclease HI [Staphylococcus aureus subsp. aureus C101]
gi|283958198|ref|ZP_06375649.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293501249|ref|ZP_06667100.1| ribonuclease HI [Staphylococcus aureus subsp. aureus 58-424]
gi|293510210|ref|ZP_06668918.1| ribonuclease H [Staphylococcus aureus subsp. aureus M809]
gi|293526804|ref|ZP_06671488.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
M1015]
gi|295427944|ref|ZP_06820576.1| ribonuclease HI [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297591091|ref|ZP_06949729.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
gi|49241753|emb|CAG40443.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271954|gb|EEV04092.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274998|gb|EEV06485.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278916|gb|EEV09535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281640|gb|EEV11777.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284670|gb|EEV14790.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313715|gb|EFB44108.1| ribonuclease HI [Staphylococcus aureus subsp. aureus C101]
gi|282316955|gb|EFB47329.1| ribonuclease HI [Staphylococcus aureus subsp. aureus C427]
gi|282322291|gb|EFB52615.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
M899]
gi|282324708|gb|EFB55018.1| ribonuclease HI [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327014|gb|EFB57309.1| ribonuclease HI [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331072|gb|EFB60586.1| ribonuclease HI [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595633|gb|EFC00597.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
C160]
gi|283790347|gb|EFC29164.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920362|gb|EFD97426.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
M1015]
gi|291096254|gb|EFE26515.1| ribonuclease HI [Staphylococcus aureus subsp. aureus 58-424]
gi|291467154|gb|EFF09672.1| ribonuclease H [Staphylococcus aureus subsp. aureus M809]
gi|295128302|gb|EFG57936.1| ribonuclease HI [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575977|gb|EFH94693.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
gi|312438164|gb|ADQ77235.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH60]
gi|315195329|gb|EFU25716.1| hypothetical protein CGSSa00_06650 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 133
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEQDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A F K
Sbjct: 109 -----IPREQNKEANQHAQQALYKFIKK 131
>gi|255984388|gb|ACU46266.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.8 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 143 GGNEQIDKLVSTGIR 157
>gi|288187694|gb|ADC42338.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 41.8 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANKETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIVEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 642 GGNEQIDKLVSAGIR 656
>gi|312601781|gb|ADQ92450.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YADGAANRETKLGKAGYVTDRGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|167832827|gb|ACA01989.1| pol protein [Human immunodeficiency virus 1]
Length = 711
Score = 41.8 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 18/134 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I ++ A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVITLNDTTNQKTELQAILLALQ-----DAGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVGQIIEQLIKKEKVXLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAA 145
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGI 711
>gi|325637152|gb|ADZ34756.1| pol protein [Human immunodeficiency virus 1]
gi|325637171|gb|ADZ34772.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSA-SEV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y K + + + + + KV L W+ H
Sbjct: 655 NIVTDSQYALGIIQGHPDKSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++
Sbjct: 702 GIGGNEQIDKLVSTGIRK 719
>gi|119197373|ref|XP_001249288.1| hypothetical protein CIMG_10450 [Coccidioides immitis RS]
Length = 207
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 3/142 (2%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
R + Y+D + + G GV + K EL KA
Sbjct: 44 RSLILYSDRSKAEESQYAGAGVYDLQD-NIRFSWNLGKYLEVFNAELFTIDKAFKLASSI 102
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + S SQ + N S +++I K ++ + L+W+
Sbjct: 103 SQSQSRSISDIWVFSDSQAAIQRLINQDLNSGLYYLQSIRKTAKSIKNQQI-NLHLHWVP 161
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
H NE+ D +A A
Sbjct: 162 AHVNIHGNEEPD-LAVKKATEL 182
>gi|34333796|gb|AAQ64622.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|218304252|emb|CAN86226.1| pol protein [Simian immunodeficiency virus]
Length = 1021
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 19/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+ + + G G K K + + A L K+ +
Sbjct: 618 YIDGSANRDSKEGKAGFWTNSKEKVINL------YNTTNQQAELAALKLALEDGGSKINI 671
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS YV + + + + ++ + W+ H G
Sbjct: 672 ITDSQYVMGIVKDHPTISE-------------SALVQEIIDLLKQKEEIYIEWVPAHKGI 718
Query: 132 QENEKVDRIARNAAVS 147
N ++D++ S
Sbjct: 719 GGNTEIDKLVSAGIRS 734
>gi|49574274|gb|AAT66808.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 13 TDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DGA + G G+ + +G++KI+S + T N+ + AI +V
Sbjct: 442 VDGAANRETKLGKAGY---ITDRGRQKIVSLTD---TTNQKTELQAIHLALQDSGL-EVN 494
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 495 IVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKG 541
Query: 131 NQENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 542 IGGNEQVDKLVSSGIRK 558
>gi|66864702|gb|AAY57428.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 698 GGNEQIDKLVSAGIRK 713
>gi|328834120|gb|AEB52565.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 600 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELH 639
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 640 AIYLALQDSGSEVNIVTDSQDALGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 699
Query: 130 GNQENEKVDRIARNAAV 146
G NE++D++ +
Sbjct: 700 GIGGNEQIDKLVSSGIR 716
>gi|49574323|gb|AAT66831.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++ + ++ + +V
Sbjct: 441 YVDGAANRETKLGRAGY---ITDRGRQKVVPLTDTTNQKTELQAINL----ALQDSGLEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVSF 148
G N +VD++
Sbjct: 541 GIGGNTQVDKLVSAGIRKI 559
>gi|297835996|ref|XP_002885880.1| hypothetical protein ARALYDRAFT_899583 [Arabidopsis lyrata subsp.
lyrata]
gi|297331720|gb|EFH62139.1| hypothetical protein ARALYDRAFT_899583 [Arabidopsis lyrata subsp.
lyrata]
Length = 183
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 6/132 (4%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
DG+ G G L ++ +I G + A+ A+ ++ Y
Sbjct: 45 VDGSWIDPTSKAGIGWALYNTERQCLIKGSSSIEPTSSALETEALALREAILQIKRL-NY 103
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
D ++ + + ++E +Y K + +
Sbjct: 104 CDVTFCGDSK----ILYTYLETAMQQDQPPPGNLEIQNYLEDILLINKGMYHFK-YIPRE 158
Query: 133 ENEKVDRIARNA 144
N D++AR A
Sbjct: 159 INAMADKLAREA 170
>gi|242825709|ref|XP_002488494.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
10500]
gi|218712312|gb|EED11738.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
10500]
Length = 230
Score = 41.8 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + + + + W+ GHA ENE D A+ S
Sbjct: 101 WPLRERLPHTKSGSIQVRWVPGHAKIPENETADLAAKEGVAS 142
>gi|144953373|gb|ABP04064.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + KG++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDKGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G E+VD++ +
Sbjct: 696 GIGGKEQVDKLVSSGIRK 713
>gi|288187631|gb|ADC42308.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELHAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
N+++D++
Sbjct: 642 GGNDQIDKLVSAGIRK 657
>gi|257152875|emb|CAT00576.1| gag/pol precursor [HIV-1 M_97CD.KTB119]
Length = 1435
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1028 YVDGAANRETKLGKAGYVTDRGRQKIISLTETTNQKTELHAIYLALQ-----DSGSEVNV 1082
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ +V L W+ H G
Sbjct: 1083 VTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKE-------------RVYLSWVPAHKGI 1129
Query: 132 QENEKVDRIARNAAV 146
NE++D++ +
Sbjct: 1130 GGNEQIDKLVSSGIR 1144
>gi|255984762|gb|ACU46453.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAXXRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIRK 158
>gi|60544778|gb|AAX22724.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + +T N + EL A + AL +V
Sbjct: 596 YVDGAATREAKLGKAGY-----TTDRGRQKVVPLTDTPNQKTELQAILLALQDSGL--EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|306478135|gb|ADM89442.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKIVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKAYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|13095178|gb|AAK12169.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWAPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|288187610|gb|ADC42298.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 41.8 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|256011784|gb|ACU55748.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A
Sbjct: 596 YVDGAANRETRLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA-------------XQ 642
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ SQ+ SD V + E KV W+ H G
Sbjct: 643 DSGLEVNIVTXSQYALGIIHAQPDKSDSXLVSQXIEQLIKKE-----KVYXAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|63014402|gb|AAY25582.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.8 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
N+++D++
Sbjct: 698 GGNDQIDKLVSAGIRK 713
>gi|74220954|dbj|BAE33649.1| unnamed protein product [Mus musculus]
Length = 212
Score = 41.8 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 36 EKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWK 95
E I + T+ + + A+ + K+ +YTDS Y + +++ G
Sbjct: 6 EVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLL 65
Query: 96 TSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHA-GN----QENEKVDRIARNAAV 146
TS+ K +KN + ++A ++ + GH GN + N D+ AR AA+
Sbjct: 66 TSEGKEIKNKSEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM 122
>gi|4324757|gb|AAD17021.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 41.8 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ V +
Sbjct: 1020 YVDGAANRETKIGKAGYVTDRGRQRIVSLTETTNQKTELQAIQLALQ-----DSGSGVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
E+VD++ +
Sbjct: 1122 GGKEQVDKLVSSGIRK 1137
>gi|242826842|ref|XP_002488714.1| hypothetical protein TSTA_008290 [Talaromyces stipitatus ATCC
10500]
gi|218712106|gb|EED11533.1| hypothetical protein TSTA_008290 [Talaromyces stipitatus ATCC
10500]
Length = 147
Score = 41.8 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
Q + T I + +S Q+ + W+ H G NEK D++A+
Sbjct: 29 QNPPHNEDTREATIYTDNQAAIRAIHQPGRSSGQYILRRIWVLEHEGVPGNEKADQLAKR 88
Query: 144 AA 145
AA
Sbjct: 89 AA 90
>gi|37221268|gb|AAQ89765.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 41.8 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIL-------------QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGX 641
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 642 GGNEQVDKLVSTGIR 656
>gi|255984660|gb|ACU46402.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.8 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + T N+ + AI +V
Sbjct: 41 YVDGAANRETKLGRAGY---VTDRGRQKVVSLTD---TTNQKTELQAIHLALQDSGL-EV 93
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 94 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLSWVPAHK 140
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+ D++
Sbjct: 141 GIGGNEQXDKLVSAGIRK 158
>gi|301595381|ref|ZP_07240389.1| hypothetical protein AbauAB059_06212 [Acinetobacter baumannii
AB059]
Length = 59
Score = 41.8 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 7 REVHAYTDGACSGNPGPGG 25
+ + Y DGAC GNPG GG
Sbjct: 41 QTITLYVDGACRGNPGLGG 59
>gi|308490085|ref|XP_003107235.1| hypothetical protein CRE_14515 [Caenorhabditis remanei]
gi|308252341|gb|EFO96293.1| hypothetical protein CRE_14515 [Caenorhabditis remanei]
Length = 155
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 10 HAYTDGACSGNPG----PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
AYTDG+C NPG G+GV + NNR EL AA +A+
Sbjct: 33 IAYTDGSCF-NPGRRNAKAGFGVFWYDGCEYNCCGKVTGIQDNNRAELCAACRAIRMAYN 91
>gi|256011336|gb|ACU55524.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
DGA + G G + ++ + + A++ +V +
Sbjct: 600 VDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSXLEVNIV 654
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
DS Y G + ++ + + + KV L W+ H G
Sbjct: 655 XDSQYA-------------LGIIQAQPDKSESELVSXIIEQLIKKEKVYLAWVPAHKGIG 701
Query: 133 ENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 702 GNEQVDKLVSAGIRK 716
>gi|226348700|gb|ACO50669.1| pol protein [Human immunodeficiency virus 1]
Length = 455
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 79 YVDGAANRETKLGQAGYVTDRGRQKVVALTNTTNQKTELQAIHLALQ-----DSGLEVNI 133
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 134 VTDSQYA-------------LGIIQAQPDKSESELVSQTIEQLIKKEKVYLAWVPAHKGI 180
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 181 GGNEQVDKLVSNGIRK 196
>gi|134284757|gb|ABO69453.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 608 YIDGGRKRGQKARAGW------WKNSSEWQIMEIEGSNQVAEAQALNMALKAGSEKMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ Y + + E + + + W+ GH
Sbjct: 662 TNSQYVYNMVM----------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 705
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 706 IPGNKEIDEL 715
>gi|313661129|dbj|BAJ41152.1| Pol protein [Human immunodeficiency virus 1]
gi|313661139|dbj|BAJ41161.1| Pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 701 GGNEQIDKLVSAGIRK 716
>gi|258422534|ref|ZP_05685442.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257847291|gb|EEV71297.1| conserved hypothetical protein [Staphylococcus aureus A9635]
Length = 133
Score = 41.8 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG ++++ + I + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYIYTHELGEMDNHTAEWAACIYALKHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEQDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|239636887|ref|ZP_04677886.1| cell wall enzyme EbsB [Staphylococcus warneri L37603]
gi|239597561|gb|EEQ80059.1| cell wall enzyme EbsB [Staphylococcus warneri L37603]
Length = 132
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG ++++ + + + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGRSACAIVIKEEDQHHVFTHDLGEMDNHSAEWAACIHALEHARE 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ S + + K ++ + + W+
Sbjct: 59 LKVNNALLYTDSKLIADSVEAGFVK-----NAKFKPYFEQLEILEQD----FDLLFVKWV 109
Query: 126 KGHAGNQENEKVDRIARNA 144
+N++ ++ A+ A
Sbjct: 110 P----RDQNKEANQHAQQA 124
>gi|224169542|ref|XP_002197879.1| PREDICTED: similar to Gag-Pro-Pol protein, partial [Taeniopygia
guttata]
Length = 1600
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 1037 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1091
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 1092 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----ILHVRAH 1147
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 1148 TDLPGAIAEGNRRADHLA 1165
>gi|62822727|gb|AAY15127.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 531
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + ++TTN + EL A AL KV +
Sbjct: 422 YTDGSCNRQSKEGKAGYVTDRGRDKV---RVLEQTTNQQAELEAFAMALADSGP--KVNI 476
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + + + + V + W+ H G
Sbjct: 477 IVDSQYVMGIVAGQPTESE-------------SKIVNQIIEDMTKKEAVYVAWVPAHKGI 523
Query: 132 QENEKVDR 139
N++VD
Sbjct: 524 GGNQEVDH 531
>gi|218304263|emb|CAN87025.1| pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 4 KHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ L EV Y DG+ + + G G+ K KEK++S + L
Sbjct: 610 EPLPEVETYYIDGSANRDSKEGKAGY----WTKSKEKVVS----VQNTTNQQTELIALKL 661
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHK 119
K+ + TDS YV D T+ L + +E + +
Sbjct: 662 ALEDGGQKMNIITDSQYVMGIV--------------KDHPTMSESPLVQEIIELLKGKEE 707
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + W+ H G N ++DR+ S
Sbjct: 708 IYIDWVPAHKGIGGNTEIDRLVSAGIRS 735
>gi|47118251|gb|AAT11238.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLNDTTNQKTELQAILLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + V L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEXVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLVSTGIRK 657
>gi|29119343|gb|AAO63256.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 41.4 bits (95), Expect = 0.037, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 602 YVDGAANRETKSGKAGYVTDRGRQKVVSLTDTTNQKTELHAINLALQ-----DSGSEVNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K L W+ H G
Sbjct: 657 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKTYLAWVPAHKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 704 GGNEQVDKLVSSGIRK 719
>gi|83722750|gb|ABC41649.1| pol protein [Feline immunodeficiency virus]
Length = 1136
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G GW E E +N E A AL A ++
Sbjct: 606 YIDGGRKRGQKARAGW------WKNSSEWQIMEIEGSNQVAEAQALNMALKAGSEKMNII 659
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ Y + + E + + + W+ GH
Sbjct: 660 TNSQYVYNMVM----------------SRPEPVDPLWKEIIEELQKKEAIFIDWVPGHKN 703
Query: 131 NQENEKVDRI 140
N+++D +
Sbjct: 704 IPGNKEIDEL 713
>gi|289469880|gb|ADC96595.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRXKVVXLTDTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 543 GGNEQIDKLVSAGIRK 558
>gi|2995620|gb|AAC09234.1| pol polyprotein [Simian immunodeficiency virus]
Length = 525
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + ++TTN + EL A AL +++
Sbjct: 360 YVDGSCNRQSREGKTGYVTDRGRDK---AKLLEQTTNQQAELEAFYLALADSGPKANIIV 416
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + + + E + + + W+ H G
Sbjct: 417 --DSQYVMGIIAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 461
Query: 132 QENEKVDRIARNAAVS 147
N +VD +
Sbjct: 462 GGNPEVDHLVSQGIRQ 477
>gi|331229368|ref|XP_003327350.1| hypothetical protein PGTG_09899 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309306340|gb|EFP82931.1| hypothetical protein PGTG_09899 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1673
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAV 146
V LYW GH G NE+ D++A++ A
Sbjct: 1477 VALYWCPGHEGLAANEQADKLAKSEAQ 1503
>gi|256011170|gb|ACU55441.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A+ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYIAL-----XDSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + K W+ H G
Sbjct: 651 VTDSQYAIGII-------------QAQPDKSESELVXQIIEQLIKKEKXYXXWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIR 712
>gi|226348670|gb|ACO50654.1| pol protein [Human immunodeficiency virus 1]
Length = 619
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + G + A++ +V +
Sbjct: 237 YVDGAANRETKLGKAGYVTDKGRQKVVSLTGTTNQKTELQAIYLALQ-----DSGLEVNI 291
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 292 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKERVYLAWVPAHKGI 338
Query: 132 QENEKVDRIARNAAVS 147
N++VD++
Sbjct: 339 GGNDQVDKLVSAGIRK 354
>gi|256011698|gb|ACU55705.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKDKVYLAWVPAHKXI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSYGIRK 716
>gi|256011032|gb|ACU55372.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEELIKKEXXYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIR 712
>gi|242815637|ref|XP_002486608.1| hypothetical protein TSTA_105810 [Talaromyces stipitatus ATCC
10500]
gi|218714947|gb|EED14370.1| hypothetical protein TSTA_105810 [Talaromyces stipitatus ATCC
10500]
Length = 485
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 3/132 (2%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ + YTDG+ G G G +++ GK++ G + T+ IK
Sbjct: 123 RKNEHIAIYTDGS--GYQGYIGTSMVIPAFGKQRTECIGTEGTSTVYAAEACGIKFALET 180
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
V SQ + N S + + + ++ V L
Sbjct: 181 TLQIADQNIQTKKLVIFSDSQAALRTLMNPRMVSGQTYIHDCIDSLRKC-IDEDIDVTLR 239
Query: 124 WIKGHAGNQENE 135
WI GH NE
Sbjct: 240 WIPGHEDIPGNE 251
>gi|13095174|gb|AAK12167.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKDKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
ENE+VD++
Sbjct: 543 EIGENEQVDKLVSAGIRK 560
>gi|6690754|gb|AAF24313.1|AF197338_1 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ + +G++K++S E T N+ + AI +V
Sbjct: 596 YVDGAASRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + KV L W+ H
Sbjct: 649 NIVTDSQYALGIIQAQPDRSE-------------SEVVNQIIEELIKKEKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G +E+VD++ +
Sbjct: 696 GIGGDEQVDKLVSSGIRK 713
>gi|158534853|gb|ABW72071.1| TE2 [Blumeria graminis f. sp. hordei]
Length = 156
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V++ WI H+G N++VD++A+ A
Sbjct: 51 VEVRWIPRHSGITGNKQVDKLAKAA 75
>gi|108862665|gb|ABA98419.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1316
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ + G GV+L E++ + +N E A +
Sbjct: 1139 MPEEKMEYWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYAALLH 1196
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V ++ +E +
Sbjct: 1197 GLRIAICLGIRRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVCKLEDKFDGLELT- 1253
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1254 -----------HVLRHNNEAADRLAN 1268
>gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 353
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 38/140 (27%), Gaps = 18/140 (12%)
Query: 11 AYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYP 66
DGA GNPG G +L + G TNN E A I L K
Sbjct: 219 IEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGY 278
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + DS V Q +W+ N + + V
Sbjct: 279 KNIKVKGDSKLVCM---QIKGQWKVNHEVLAKLHKEAKLLCNKC---------VSFE--I 324
Query: 127 GHAGNQENEKVDRIARNAAV 146
H N D A A
Sbjct: 325 SHVLRNLNADADEQANLAVR 344
>gi|256011406|gb|ACU55559.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIELLIKKEKVYLAWVXAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|242806255|ref|XP_002484707.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715332|gb|EED14754.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 178
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ + + + + W+ H +NE D A+ AVS
Sbjct: 100 WPLRERLPHTKSGSIQIRWVPRHTKIPKNEAADLAAKEGAVSI 142
>gi|312601978|gb|ADQ92545.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGTQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIR 712
>gi|288187523|gb|ADC42256.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G G + ++ + + A++ +V +
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGEEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKAYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ N
Sbjct: 642 GGNEQIDKLVSNGIRK 657
>gi|87137447|gb|ABD27939.1| pol protein [Simian immunodeficiency virus]
gi|87137449|gb|ABD27940.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +G+++I S ++TTN R EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTDRGRQRIHS--LEDTTNQRAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SEIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|298694727|gb|ADI97949.1| probable cell wall enzyme [Staphylococcus aureus subsp. aureus
ED133]
gi|323438449|gb|EGA96203.1| hypothetical protein SAO11_2712 [Staphylococcus aureus O11]
gi|323444087|gb|EGB01698.1| hypothetical protein SAO46_0197 [Staphylococcus aureus O46]
Length = 133
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEQDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|325637262|gb|ADZ34846.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 599 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGQEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKAYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 701 GGNEQVDKLVSAGIR 715
>gi|226348528|gb|ACO50583.1| pol protein [Human immunodeficiency virus 1]
Length = 457
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 77 YVDGAANRETKLGRAGYVTNKGRQRVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 131
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L WI H G
Sbjct: 132 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWIPAHKGI 178
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 179 GGNEQVDKLVSAGIRK 194
>gi|255984564|gb|ACU46354.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G ++ + + A++ +V +
Sbjct: 41 YVDGAXNRETRLGKAGYXTDRGRQKVVSLSDTTNQKTELQAIHLALQ-----DSGSEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKXKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIR 157
>gi|59897228|gb|AAX12023.1| ribonuclease HI [Enterobacteria phage T5]
Length = 111
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM------KFVEASAQHKVD 121
+++YTDS+Y G W+ WQ+ GWK +D + N++L +
Sbjct: 20 PIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELGQEAFKLTQQYINFHNTNPT 79
Query: 122 LYWIKGHAGNQENEKVDRIAR 142
+KGH+G NE VD +
Sbjct: 80 FIKVKGHSGISGNEAVDALCN 100
>gi|302545892|ref|ZP_07298234.1| Ribonuclease HI [Streptomyces hygroscopicus ATCC 53653]
gi|302463510|gb|EFL26603.1| Ribonuclease HI [Streptomyces himastatinicus ATCC 53653]
Length = 147
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRY---KGKEKIISGGEKETTNNRMELMAAI 57
R DG GNPGP G+G ++ ++ TNN E I
Sbjct: 49 RRFIVEADGGSRGNPGPAGYGAVVLDAVTGEPLAEVAEYIGTATNNVAEYKGLI 102
>gi|256011638|gb|ACU55675.1| pol protein [Human immunodeficiency virus 1]
Length = 965
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++
Sbjct: 558 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIXLALQ------------- 604
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ SQ+ Q S+ + V I + E KV L W+ H G
Sbjct: 605 DSGLEVNIVTXSQYALGIIQAQPDKSESELVSQIIEQLIKKE-----KVYLAWVPAHKGI 659
Query: 132 QENEKVDRIARNAAVS 147
NEKVD++ +
Sbjct: 660 GGNEKVDKLVSSGIRK 675
>gi|306477993|gb|ADM89371.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ KV +
Sbjct: 441 YVDGAANRETKLGRAGYVTDRGRQKAVSLTDTTNQKTELQAIYLALR-----DSGLKVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|224152776|ref|XP_002337272.1| predicted protein [Populus trichocarpa]
gi|222838663|gb|EEE77028.1| predicted protein [Populus trichocarpa]
Length = 148
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 13 TDGACSGNPGPGGWGVLLR--YKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ G P P G G +LR + + S +N EL A +KA+ L C
Sbjct: 14 VDGSSLGKPDPSGIGGVLRNHHGHLLGMFSVPVGILDSNIAELRAIVKAIELLASNCLFH 73
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+ H K + + + + H
Sbjct: 74 ------HQHLIIESDSVNAISWMNKPHSRPWKHHNLFSSVNRLKAYFGSITF----SHIF 123
Query: 131 NQENEKVDRIARNAAV 146
+ N D +A+
Sbjct: 124 RESNCMADCMAKQGVQ 139
>gi|325974074|emb|CCA30187.1| hypothetical protein TbgDal_II490 [Trypanosoma brucei gambiense
DAL972]
Length = 329
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 101 TVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + + ++ L ++ GH G + NE D++A+ AA
Sbjct: 15 PILRRLWRLLLQVQRRKIRIRLQFVFGHCGVKRNEVCDKMAKKAAD 60
>gi|312601939|gb|ADQ92526.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YIDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 642 GRNEQVDKLVSAGIRK 657
>gi|256011232|gb|ACU55472.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKXI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|13095220|gb|AAK12188.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVSAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRE 560
>gi|115442602|ref|XP_001218108.1| predicted protein [Aspergillus terreus NIH2624]
gi|114187977|gb|EAU29677.1| predicted protein [Aspergillus terreus NIH2624]
Length = 856
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 125 IKGHAGNQENEKVDRIARNAAV 146
I HA NE D++AR AA+
Sbjct: 716 IPAHARVPGNEVADQLARQAAL 737
>gi|5106564|gb|AAD39753.1|AF131870_2 Pol protein [Simian immunodeficiency virus]
Length = 1027
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 12 YTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + G+ ++ E T N+ + AIK V
Sbjct: 624 YVDGAAEKLEKRGKAGY---ITQGGRSRVKK---LENTTNQQAELEAIKMALEDSR-SSV 676
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + S+ + + + +V L W+ H
Sbjct: 677 NIVTDSQYALRLLSKRPT-------------ETDSELVKEIVELIRQKDQVYLGWVPAHK 723
Query: 130 GNQENEKVDRIARNAAVSFK 149
G N+++D++ +
Sbjct: 724 GIGGNQEIDQLVSQGIRKRQ 743
>gi|282876126|ref|ZP_06284993.1| putative cell wall enzyme EbsB [Staphylococcus epidermidis SK135]
gi|281295151|gb|EFA87678.1| putative cell wall enzyme EbsB [Staphylococcus epidermidis SK135]
Length = 130
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPC 67
+ D A GNPG ++++ + + E N+ E A + AL +
Sbjct: 3 KIHFDAATKGNPGRSTCAIIIKENSQRYTFTHDLGEMDNHSAEWAAMLHALEHARELKVS 62
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
LL+TDS + Q + K + ++ V
Sbjct: 63 NALLFTDSKLIEDSMMQGKV---------KNAKFKVYFENIEILEQSFDLMFVRW----- 108
Query: 128 HAGNQENEKVDRIARN 143
++N++ +++A+
Sbjct: 109 -IPRKQNKEANQLAQQ 123
>gi|256010974|gb|ACU55343.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + +V +
Sbjct: 596 YVDGAXNRETKLGKAGYVTNKGRQKVISJTNTTNQKTELQAIY-----XXXXXXGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ N
Sbjct: 698 GGNEQVDKLVSNGIRK 713
>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 38/150 (25%), Gaps = 16/150 (10%)
Query: 11 AYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKYP 66
DGA GNPG G +L + G TNN E A I L K
Sbjct: 210 IEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGY 269
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA----------SA 116
+ + DS V S ++ + + W E
Sbjct: 270 KNIKVKGDSKLVCMQVSLMNHIRFYLLTFSTLSEKQQIKGQWKVNHEVLAKLHKEAKLLC 329
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
V H N D A A
Sbjct: 330 NKCVSFE--ISHVLRNLNADADEQANLAVR 357
>gi|256010925|gb|ACU55319.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S +TTN + EL A AL +V
Sbjct: 602 YVDGAANRETKLGRAGY---VTDRGRQKVVS--LTDTTNQKTELQAVHLALQDSGL--EV 654
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS YV G + ++ + + + KV L W+ H
Sbjct: 655 NIVTDSQYV-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 701
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++
Sbjct: 702 GIGGNEQVDKLVSTGIR 718
>gi|227541312|ref|ZP_03971361.1| hypothetical protein HMPREF0293_0631 [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182863|gb|EEI63835.1| hypothetical protein HMPREF0293_0631 [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 293
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
TD A G G + ++ + + E A ALT V
Sbjct: 123 VVATD-ASLGTGHRAGIAAVATRG---RVRARSLLVESVADAEFWAVEMALTTWAGKTPV 178
Query: 70 -LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ TDS V+K + +K K + + +V ++W++GH
Sbjct: 179 LHILTDSQIVYKALNG-------------AEKPTGCATSLRKCFKRMDRAEVYVHWVRGH 225
Query: 129 AGNQENEKVDRIARNAAV 146
GN NE +A + A+
Sbjct: 226 RGNVLNE----LANDVAM 239
>gi|227487600|ref|ZP_03917916.1| hypothetical protein HMPREF0294_0750 [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092418|gb|EEI27730.1| hypothetical protein HMPREF0294_0750 [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 293
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 22/138 (15%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
TD A G G + ++ + + E A ALT V
Sbjct: 123 VVATD-ASLGTGHRAGIAAVATRG---RVRARSLLVESVADAEFWAVEMALTTWAGKTPV 178
Query: 70 -LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ TDS V+K + +K K + + +V ++W++GH
Sbjct: 179 LHILTDSQIVYKALNG-------------AEKPTGCATSLRKCFKRMDRAEVYVHWVRGH 225
Query: 129 AGNQENEKVDRIARNAAV 146
GN NE +A + A+
Sbjct: 226 RGNVLNE----LANDVAM 239
>gi|28195237|gb|AAO27434.1| polymerase [Homo sapiens]
Length = 727
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 325 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 373
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 374 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 428
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 429 AHTNLPGPLTKANEEADLLVSSALIKAQE 457
>gi|52000846|sp|Q9UQG0|POK20_HUMAN RecName: Full=HERV-K_3q27.3 provirus ancestral Pol protein;
Includes: RecName: Full=Reverse transcriptase; Short=RT;
Includes: RecName: Full=Ribonuclease H; Short=RNase H;
Includes: RecName: Full=Integrase; Short=IN
Length = 969
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEEADLLVSSALIKAQE 594
>gi|257146462|emb|CAT00606.1| gag/pol precursor [HIV-1 M_02CD.MBTB047]
Length = 1430
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1023 YVDGAANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELHAIYLALQ-----DSGLEVNI 1077
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ KV L W+ H G
Sbjct: 1078 VTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKE-------------KVYLSWVPAHKGI 1124
Query: 132 QENEKVDRIARNAAVS 147
NE++D++ +
Sbjct: 1125 GGNEQIDKLVSSGIRK 1140
>gi|256011092|gb|ACU55402.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + N+ T + +
Sbjct: 596 YVDGAANKETKIGKAGYV------------------TNKGRQKVVSLTDTTNQKTELQAI 637
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
Y + G + ++ + + + K+ L W+ H G
Sbjct: 638 YLALQDSGSEXNIVTXSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGVRK 713
>gi|289187325|gb|ADC92241.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANKETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE++D++
Sbjct: 642 GGNEQIDKL 650
>gi|306478187|gb|ADM89468.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVISITDTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWAPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558
>gi|112351509|gb|ABI15295.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 596 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLTDTTNQKTELQ 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + +V L W+ H
Sbjct: 636 AIYLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSKIIEQLIKKERVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSAEIRK 713
>gi|18568275|gb|AAL76007.1|AF466646_15 prpol [Zea mays]
Length = 1317
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G G G VL+ + + N + A+ +
Sbjct: 749 TVFCDGSW-GTFGAGAAAVLVSPSKVKICYAAKLDFNCTNNIAEYEALVLGLRKLKAMGI 807
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ K SQ + K D K K +D+ + + V
Sbjct: 808 R-----RAILKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEASFEGFSVKN------I 856
Query: 130 GNQENEKVDRIARNAAVSF 148
+NE D +A++AA
Sbjct: 857 PRGQNEHADLLAKSAAQGL 875
>gi|256011372|gb|ACU55542.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGXAGYVTDKGRQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y W+ H G
Sbjct: 651 VTDSQYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------WVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|13095195|gb|AAK12176.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DG + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGVANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|161936085|gb|ABX80624.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
YTDG+C+ G G+ + +GK+K+ + + K V
Sbjct: 648 YTDGSCNKQSKEGKAGY---ITDRGKDKVKVLEQTTXXXXXXXXXXXXXXXSGPKANIIV 704
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
DS YV + + + + + E + ++ + W+ H
Sbjct: 705 ----DSQYVIGIITGCPTESE-------------SRLVNQIIEEMIKKSEIYVAWVPAHK 747
Query: 130 GNQENEKVDRIARNAAVS 147
G N+++D +
Sbjct: 748 GIGGNQEIDHLVSQGIRQ 765
>gi|13095122|gb|AAK12145.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGNVTDKGRQKVVSITDTTNQKTELQAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 498 ITDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|256011380|gb|ACU55546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAXNRETKLGKAGYVTDRGRQKXVSLTDTTNQKTELQAIHLALQ-----DSGXEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKXYLTWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|32488767|emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa Japonica Group]
Length = 1748
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT 61
+ + + DG+ PG G GV+L K K+ + ++N E A + L
Sbjct: 1384 EKMEHWTMHFDGSKRL-PGTGA-GVVLISPTGRKIKLCAWIHFSASHNVAEYEALLHGLR 1441
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + + ++ V+ + +E
Sbjct: 1442 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMMAYRQEVRKWEDKFDGLEL----- 1494
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1495 -------SHVLRHNNEAADRLAN 1510
>gi|328834150|gb|AEB52592.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 41.0 bits (94), Expect = 0.048, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKMGKAGYVTDRGRQKVVPLTETTNQKTELQAIYLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIQKERVYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+V+++ N
Sbjct: 700 GGNEQVNKLVSNGIRK 715
>gi|4007993|gb|AAC95341.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 1055
Score = 41.0 bits (94), Expect = 0.048, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG C+ G G + + ++TTN + EL A A+T +++
Sbjct: 643 YTDGPCNRQSKEGKAGYITDRGRDKV---KVLEQTTNQQAELEAFALAVTDSGPKANIIV 699
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + + + N + E + + + W+ H G
Sbjct: 700 --DSQYVMGIVAGQPTESE-------------NRIVNQIIEEMIKKEAIYVAWVPAHKGI 744
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 745 GGNQEVDHLVSQGIRQ 760
>gi|256011208|gb|ACU55460.1| pol protein [Human immunodeficiency virus 1]
Length = 807
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R + T +
Sbjct: 555 YVDGAANXETKLGKAGY--------------------VTDRGKQKVVPLTETTNQKTELH 594
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + + + + + KV L W+ H
Sbjct: 595 AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSELVNXIIEKLIEKDKVYLSWVPAHK 654
Query: 130 GNQENEKVDRIARNAAV 146
G NE+VD++ N
Sbjct: 655 GIGGNEQVDKLVSNGIR 671
>gi|256010817|gb|ACU55265.1| pol protein [Human immunodeficiency virus 1]
Length = 911
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++
Sbjct: 598 YVDGAANRETXLGKAGYVTDRGRQKVVPLADTTNQKTELQAIHLALQDXGLEGNM----- 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHKGI 699
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 700 GGNEQVDKLVSXGIR 714
>gi|224164877|ref|XP_002198690.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 667
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 14/143 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + + +TDG+ G V+ K K + + A
Sbjct: 335 QEPVEGMTIFTDGS-----GKTHKSVVTWQNPKTGEWESDIKIVQGSPQIVELAAVVRVF 389
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + L TDS+YV K+ + + K +D + + + L M+ + + QHK +
Sbjct: 390 QLFREPLNLITDSAYVANVV----KRLEGSLLKHTDNEILYSYLLCMRTILENRQHKYFV 445
Query: 123 YWIKGHAGN-----QENEKVDRI 140
I+ H+ + N DR+
Sbjct: 446 AHIRAHSSLPGFLAEGNAHADRL 468
>gi|87137457|gb|ABD27944.1| pol protein [Simian immunodeficiency virus]
gi|87137463|gb|ABD27947.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +G++KI S ++TTN R EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTNRGRQKIHS--LEDTTNQRAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SDIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|49574345|gb|AAT66842.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|302333045|gb|ADL23238.1| cell wall enzyme EbsB-like protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 133
Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK- 64
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALKHARE 58
Query: 65 -YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
LLYTDS + + + K D F + V
Sbjct: 59 LNVSNALLYTDSKLIADSVN---------AGYVKNAKFKPYFDQLEIFEKDFDLLFVKW- 108
Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 109 -----IPREQNKEANQHAQQALYKLIKK 131
>gi|242222489|ref|XP_002476962.1| predicted protein [Postia placenta Mad-698-R]
gi|220723717|gb|EED77834.1| predicted protein [Postia placenta Mad-698-R]
Length = 367
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 91 QNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
+ + S + F+ + + +V L W+ H + NE VD +A+ A +
Sbjct: 48 CSDNRPSQLAAISACSALRTFLAGNPRRRVLLLWVPAHKNIEPNEFVDELAKAALDGVQ 106
>gi|289706830|ref|ZP_06503173.1| ribonuclease HI [Micrococcus luteus SK58]
gi|289556515|gb|EFD49863.1| ribonuclease HI [Micrococcus luteus SK58]
Length = 451
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 3/128 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL--KYPCK 68
Y DG+ GG + G +E + + A +
Sbjct: 283 VYVDGSVLRGSRIGGAAAVAGPSMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGR 342
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V +++DS + ++ G + L + +A +VD W+KG
Sbjct: 343 VTIHSDSRAALALLNAARRERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKG 402
Query: 128 HAGNQENE 135
H G NE
Sbjct: 403 HVGVHGNE 410
>gi|157849817|gb|ABV89696.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++KI+S E ++ + +V
Sbjct: 594 YVDGAANRETKLGKAGY---VTDRGRKKIVSLNETTNQKTELQAICI----ALQDSGPEV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + +V L W+ H
Sbjct: 647 NIVTDSQYA-------------LGIIQAQPDKSESELVNQIIDHLIKKERVYLSWVPAHK 693
Query: 130 GNQENEKVDRIARNAAV 146
G E+VD++ N
Sbjct: 694 GIGGKEQVDKLVSNGIR 710
>gi|169838898|ref|ZP_02872086.1| hypothetical protein cdivTM_17623 [candidate division TM7
single-cell isolate TM7a]
Length = 43
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 122 LYWIKGHAGNQENEKVDRIARNAAVSFK 149
L W++GH G++ NE D A A K
Sbjct: 12 LIWVRGHVGHEGNELADTWANKAREGEK 39
>gi|156540059|ref|XP_001599613.1| PREDICTED: similar to Cat Eye Syndrome critical region protein,
partial [Nasonia vitripennis]
Length = 721
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+KV L + GH G + NE DR+A A
Sbjct: 286 HNNKVRLLCVPGHTGIRGNEIADRLAALGAK 316
>gi|331249489|ref|XP_003337361.1| hypothetical protein PGTG_18955 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316351|gb|EFP92942.1| hypothetical protein PGTG_18955 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 313
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V LYW GH G NE+ D++A++ + +I
Sbjct: 113 VSLYWCPGHEGITANEQADKMAKSEVQLSEKEI 145
>gi|306416430|gb|ADM87062.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G+ + +GK+K++S E T N+ + AI +V
Sbjct: 441 YVDGAASRETKLEKAGY---VTDRGKQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + E + KV L W+ H
Sbjct: 494 NIVTDSQYALEIIQAQPDRSK-------------SEVVNQIIEELIKKKKVYLSWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+++++ +
Sbjct: 541 GIGGNEQINKLVSSGIRK 558
>gi|15217240|gb|AAK92584.1|AC074354_18 Putative retroelement [Oryza sativa Japonica Group]
Length = 1705
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 2 DSKHLREV-HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIK 58
+ + + ++ Y+DG+ S G +L + + + +TTNN E A +
Sbjct: 1234 EPEPVEQLWVMYSDGSWSHKG--AGIAAVLNSPNGVPIRYAARLQFDTTNNAAEYEAILL 1291
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L K ++L+ TDS V + + ++++ + +
Sbjct: 1292 GLRKAKALGIRRLLIRTDSKLVAGHIDNPFEAKEGMKRYLEAVRSMEKCFIGIMVE---- 1347
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAA 145
H +NE+ D +A++AA
Sbjct: 1348 -----------HLPRGQNEEADALAKSAA 1365
>gi|256011252|gb|ACU55482.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKXKIYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 698 GGNEQIDKLVSTGIR 712
>gi|49574347|gb|AAT66843.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|299537595|ref|ZP_07050888.1| hypothetical protein BFZC1_16295 [Lysinibacillus fusiformis ZC1]
gi|298726964|gb|EFI67546.1| hypothetical protein BFZC1_16295 [Lysinibacillus fusiformis ZC1]
Length = 220
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 36/146 (24%), Gaps = 24/146 (16%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEK---------IISGGEKETTNNRMELMAAIKA 59
+ Y DG G G ++ Y+ K +A ++
Sbjct: 74 ITIYFDGGFDRGTRQAGLGCVIYYEQNGKPLRLRRNAFSSELKSNNEAEYAALYLALVEL 133
Query: 60 LTALKYPCKVLLYTDSSYVHKGFS-QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V + DS V + +W ++ +
Sbjct: 134 ELLNVHHLPVRIIGDSQVVINQLNGEWPALEKELASWADKIDAKLEQLHIQAEYQL---- 189
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
++N + DR+A A
Sbjct: 190 ----------VTRKDNSEADRLATQA 205
>gi|256011160|gb|ACU55436.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ +V L
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVXSLTDTTNQKTELQAIYLALQ-----DSGLEVNL 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNLIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++ +
Sbjct: 698 GGNEQXDKLVSSGIRK 713
>gi|49574339|gb|AAT66839.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITVLGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|256011514|gb|ACU55613.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S +
Sbjct: 596 YVDGAANRETKLGKAGY---VTDKGRQKVVS----LSDTTNQXXXXXXXXXXXXXXXXXX 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE++D++ N
Sbjct: 696 GIGGNEQIDKLVSNGIRK 713
>gi|219116282|ref|XP_002178936.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409703|gb|EEC49634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 376
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 19/161 (11%)
Query: 8 EVHAYTDGACSGNPG---------------PGGWGVLLRYKGKEKIISGG---EKETTNN 49
++H DG GNPG G G+ R + G E +
Sbjct: 167 KIHINFDGGSRGNPGVAGAGVAVVLTDLDWRIGDGLCERLNVHLRFFVGTGATNNEAEYS 226
Query: 50 RMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
+ ++ V +G S+ I + + + K + +
Sbjct: 227 GALWALTVAREETRRFESFYDCEAHVQLVVQGDSKLIIQQLKGNYTCKSPKLKPYYEKAI 286
Query: 110 KFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ ++ H + N++ D +A A + ++
Sbjct: 287 QLLDDFQSFA-QFRLSLEHVYRESNKQADGLANEAMDAQRS 326
>gi|328834159|gb|AEB52600.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANTETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYG-------------LGIIQAQPDKSESELVSPIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GRNEQVDKLVSAGIRK 713
>gi|288187533|gb|ADC42261.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + + + + KV L W+ H G
Sbjct: 595 VTDSQYALGIIQALPDKSE-------------SELVNQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NEK+D++ +
Sbjct: 642 GGNEKIDKLVSSGIRK 657
>gi|255984670|gb|ACU46407.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKAGYVTNRGRQKVVSLNDTTNQKTELQAIYLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+ D++
Sbjct: 143 GGNEQXDKLVSXGIR 157
>gi|328714487|ref|XP_003245372.1| PREDICTED: hypothetical protein LOC100572687 [Acyrthosiphon pisum]
Length = 366
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
K + +E + + + WI H NE+ D AR A S
Sbjct: 247 KISNKMIWVSIDETTDIEVQSGYSIIWIWILSHNQITGNERSDEKARQAITS 298
>gi|297790111|ref|XP_002862964.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308751|gb|EFH39223.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 157
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 40/135 (29%), Gaps = 12/135 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
TDG+ G G L I+ G + A+ L L Y V L
Sbjct: 25 TDGSWINPESKAGIGWALFNAQHRNILQGFSSLEPTSSAIEAEALLQLRKLNYR-NVTLC 83
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQ 132
DSS + Q + + ++E D Y K Q
Sbjct: 84 GDSSTLFHYLEQAEQHSE----------PNSGHIEIQAYLEDILAMAEDFYHFKF-IPRQ 132
Query: 133 ENEKVDRIARNAAVS 147
N DR+A+ A +
Sbjct: 133 FNVLADRLAKKARLK 147
>gi|325636133|gb|ADZ33898.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNPG--PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G+ + +G++K++S + T N+ + AI +V
Sbjct: 596 YVDGAANRETKLEKAGY---VTDRGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 649 NIVTDSQYA-------------LGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 696 GIGGNEQVDKLVSTGIRK 713
>gi|307194212|gb|EFN76629.1| hypothetical protein EAI_07164 [Harpegnathos saltator]
Length = 110
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARN 143
+ + + + WI H NE VD +A+
Sbjct: 63 KGKYHPLVYMMRDIIHNLYLQNITIAFIWIPEHHNIPGNEAVDLLAKE 110
>gi|226348752|gb|ACO50695.1| pol protein [Human immunodeficiency virus 1]
Length = 756
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 374 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 428
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 429 VTDSQYA-------------LGIIQAQPDKSESELVNEIIEKLIRKDKVYLSWVPAHKGT 475
Query: 132 QENEKVDRIARNAAVSF 148
N++VD++ N
Sbjct: 476 GGNDQVDKLVSNGIRKI 492
>gi|55139301|gb|AAV41320.1| pol protein [Human immunodeficiency virus 1]
gi|212383220|gb|ACJ25901.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 598 YVDGAANRETKIGKAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQ-----DSGSEVNI 652
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 653 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 699
Query: 132 QENEKVDRIARNAAVS 147
NE+V ++ +
Sbjct: 700 GGNEQVGKLVSSGIRK 715
>gi|55376649|ref|YP_134500.1| RNaseH [Haloarcula marismortui ATCC 43049]
gi|55229374|gb|AAV44794.1| RNaseH [Haloarcula marismortui ATCC 43049]
Length = 224
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 32/139 (23%), Gaps = 11/139 (7%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V Y DG+ N GP G G +++ G + N +
Sbjct: 90 RVVLYVDGSAHSN-GPAGAGAVIQADETPIARLGRPVGSRTNN----NVAEYAALHLGLQ 144
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ D V G S K + A H+ +
Sbjct: 145 ALATRCDPESVEIRIDSMTVINHIWGDSESTVKATPYSTAITDHLSALPTHE--WTHLAD 202
Query: 128 HAGNQENEKVDRIARNAAV 146
N D A A
Sbjct: 203 SDPNP----ADAQATVGAD 217
>gi|49574343|gb|AAT66841.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SGVVSQIIEQLIKKEKVHLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|315637482|ref|ZP_07892692.1| ribonuclease H [Arcobacter butzleri JV22]
gi|315478200|gb|EFU68923.1| ribonuclease H [Arcobacter butzleri JV22]
Length = 159
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 6 LREVHAYTDGACSGNPG-PGGWGVLL-------RYKGKEKIISGGEKETTNNRMELMAAI 57
++++ + D S NP G+G L K+ I +T++ ++EL + +
Sbjct: 1 MKKIKLFVD--SSVNPQEKVGFGAFLEVFDDLSIDDLKKNIKIKRFDDTSSTKLELQSLL 58
Query: 58 KALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
AL ++ K+ +YTD + ++ +K + N +K+S K + N +L+ F +
Sbjct: 59 WALDEIEILADTKIEVYTDCQNIVGLQNRK-EKLEANDYKSSTGKIINNYELYKLFFKKI 117
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRI 140
+ +D IKGH ++N D +
Sbjct: 118 EKLDIDFIKIKGH---KKNSLKDEL 139
>gi|9665118|gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 32/134 (23%), Gaps = 15/134 (11%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTALKYPCKVL 70
TDGA GNP G ++R S + EL A L
Sbjct: 116 TDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQ 175
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L + + + L + ++ H
Sbjct: 176 LEMEID-------SEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRI------SHVY 222
Query: 131 NQENEKVDRIARNA 144
+ N D +A A
Sbjct: 223 REANRLADGLANYA 236
>gi|134140572|gb|ABO61045.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACS--GNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA G G+ + GKEK++S + TTN + EL A + AL +
Sbjct: 597 YVDGAAHKVSKLGKAGY---VTNTGKEKVVS--LENTTNQKAELEAVLLALKEGPPSMNI 651
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
TDS YV G S + + + + + V L W+ H
Sbjct: 652 --VTDSQYV-------------LGIVASQPQESTSPLVEEIIQQLLTKEAVYLSWVPAHK 696
Query: 130 GNQENEKVDRIARNAAVS 147
G NE VD++ +
Sbjct: 697 GIGGNEDVDKLVSHGIRQ 714
>gi|36365426|gb|AAQ86643.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAILLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + K+ L W+ H G
Sbjct: 650 VTDSQYALGIIQAQPDRSE-------------SEVVNQIIEQLIKKEKIYLAWVPAHKGI 696
Query: 132 QENEKVDRIARNAAVSF 148
N +VD++ N
Sbjct: 697 GGNGQVDKLVSNGIRKI 713
>gi|256010962|gb|ACU55337.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 600 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 702 GGNEQVDKLVSTGIR 716
>gi|88801618|ref|ZP_01117146.1| putative ribonuclease H1 [Polaribacter irgensii 23-P]
gi|88782276|gb|EAR13453.1| putative ribonuclease H1 [Polaribacter irgensii 23-P]
Length = 211
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 11 AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT--ALKYPCK 68
D AC+GNPG + +L + +E G + TNN E +A + + K
Sbjct: 82 ISVDAACAGNPGKMEYRGVLTHNKQEIFKRGPYERGTNNIGEFLALVHGIALLKNKNKED 141
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ +Y+DS + K + S+K+ + I +++ + L W
Sbjct: 142 IPIYSDSRTAMSWV-KQKKCKTNLAFDASNKELLILIKRAENWLKENTVKNPILKW 196
>gi|325637335|gb|ADZ34909.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 595 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 649
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H
Sbjct: 650 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKRI 696
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 697 GGNEQVDKLVSSGIR 711
>gi|254520156|ref|ZP_05132212.1| ribonuclease HI [Clostridium sp. 7_2_43FAA]
gi|226913905|gb|EEH99106.1| ribonuclease HI [Clostridium sp. 7_2_43FAA]
Length = 316
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 2/131 (1%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+H Y DG+ S + +G++ + I + A + A+K
Sbjct: 75 LHIYVDGSYSISTEKYSYGLVAVRDNIVEYIESSAAKDNTKSNIRQIAGELEAAIKGVEY 134
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ D V + I W+ ++ ++ + + +++ +V + H
Sbjct: 135 AIRNNDKKVVIFHDYEGIAHHATGFWERREESSINYYNKMNELIKSGI--EVIFVKVDSH 192
Query: 129 AGNQENEKVDR 139
G+ NE D
Sbjct: 193 TGDLFNEIADE 203
>gi|224092749|ref|XP_002189286.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 1166
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 668 LTLFTDGS-----GKSHKSVITWKDPESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 722
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E + ++ H
Sbjct: 723 FNLVTDSAYVAGIAERAEHAMLKEIQNKKLFGLLTELIWLISHREQPYH----IMHVRAH 778
Query: 129 AGN-----QENEKVDRIA 141
+ N + D +A
Sbjct: 779 TDLPGAIAEGNRRADHLA 796
>gi|38344494|emb|CAE05173.2| OSJNBa0013A04.10 [Oryza sativa Japonica Group]
Length = 1230
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M +++ + DG+ + G GV+L E++ + +N E A +
Sbjct: 1073 MPEENMEHWTMHFDGSKRLSGT--GVGVVLISPTGERLSYILWIHFSASHNVAEYEALLH 1130
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V +
Sbjct: 1131 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL----------DDNMIAYRQEVRKLEDK 1180
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1181 FDGLELTHVLRHN----NEAADRLAN 1202
>gi|38345992|emb|CAE01940.2| OSJNBa0073L13.2 [Oryza sativa Japonica Group]
Length = 943
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
Y+DG+ S G +L + + +TTNN +E A + L K
Sbjct: 403 VMYSDGSWSHKG--AGAAAVLTLPRGVPIWYAARLQFDTTNNTIEYEAVLLGLRKAKELG 460
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + S+ + ++T ++ + ++ + A V+
Sbjct: 461 VR------RLLIRTDSKLVASHVDKSFETKEEGMKRYLEAVRSMEKCFAGITVE------ 508
Query: 128 HAGNQENEKVDRIARNAA 145
H +NE+ D +A++AA
Sbjct: 509 HLPRGQNEEADTLAKSAA 526
>gi|322703801|gb|EFY95404.1| ribonuclease H1, putative [Metarhizium anisopliae ARSEF 23]
Length = 206
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 2 DSKHLREVHAYTDGACSGNPGP---GGWGVLLRYKG-----------KEKIISGGEKETT 47
++ Y D AC N P GW + + + +++ G E T
Sbjct: 95 RRDDPEQILIYADDACLNNGQPNPRAGWAFVFKPETNQPTGIVSGRLEKRGPFGDESSQT 154
Query: 48 NNRMELMAAIKALTALKY----PCKVLLYTDSSYVHKGFSQWIKKW 89
+NR EL A + AL + ++ DS YV +G + WI+ W
Sbjct: 155 SNRAELRAVLAALRFRHWQGEGFTTLVFAADSEYVAEGATTWIRSW 200
>gi|307206620|gb|EFN84599.1| hypothetical protein EAI_12749 [Harpegnathos saltator]
Length = 87
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 98 DKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + + + L WI G+ NE DR+A
Sbjct: 44 KSHRIIQRIKFSLWQTSREGCNIVLAWIPGYKNIPGNEMADRLA 87
>gi|168186761|ref|ZP_02621396.1| ribonuclease HI [Clostridium botulinum C str. Eklund]
gi|169295350|gb|EDS77483.1| ribonuclease HI [Clostridium botulinum C str. Eklund]
Length = 256
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 6 LREV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
++V H Y DG+ + + +++ G K I G N++ ++ L A
Sbjct: 71 PKDVPHFYVDGSYNIETKKYAYALVMVESGVVKYIENG-GADNNSKKDVRQIAGELKASI 129
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
K + + + G +++ + + V
Sbjct: 130 KSIKYAAENNIKNIVLIHDYVGVCYHATGVWKRREESSEKYYNEFNKIVNDNHINVTFVK 189
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ H G+ NE VD A+ A
Sbjct: 190 VDSHTGDLFNEIVDEFAKYA 209
>gi|108709395|gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1258 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 1315
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS ++ + T+ ++ V+ ++ +E +
Sbjct: 1316 GLRIAISLGIRRLIVRGDSQLGVNQVTKEWSCL--DVNMTAYRQEVRKLEDKFDGLELT- 1372
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1373 -----------HVLRHNNEAADRLAN 1387
>gi|77556713|gb|ABA99509.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2003
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1535 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 1592
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1593 GLRIAISLGIHRLIIRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLENKFDGLELT- 1649
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1650 -----------HVLRHNNEAADRLAN 1664
>gi|328701619|ref|XP_001944874.2| PREDICTED: hypothetical protein LOC100166471 [Acyrthosiphon pisum]
Length = 672
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 124 WIKGHAGNQENEKVDRIARNAAVSF 148
WI H NEK D A+ AA +
Sbjct: 2 WIPAHKNIPGNEKADVAAKEAATNI 26
>gi|312601927|gb|ADQ92520.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRKTKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + ++ + + + +V L W+ H G
Sbjct: 595 VTDSQYAIGII-------------QAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+V+++
Sbjct: 642 GGNEQVNKLVSAGIRK 657
>gi|255984198|gb|ACU46171.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D +
Sbjct: 642 GGNEQXDXLVSXGIRK 657
>gi|52000770|sp|P63132|POK5_HUMAN RecName: Full=HERV-K_19p13.11 provirus ancestral Pol protein;
AltName: Full=HERV-K113 Pol protein; Includes: RecName:
Full=Reverse transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H; Short=RNase H; Includes: RecName:
Full=Integrase; Short=IN
Length = 956
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGLKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|110289671|gb|ABG66296.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ K + +N E A +
Sbjct: 1066 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWKHFSASHNVAEYEALLH 1123
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1124 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLELT- 1180
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1181 -----------HVLRHNNEAADRLAN 1195
>gi|255983932|gb|ACU46038.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.6 bits (93), Expect = 0.063, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
NE+ D++
Sbjct: 642 GGNEQXDKL 650
>gi|6466846|gb|AAF13061.1| Gag-Pol [Human immunodeficiency virus 1]
Length = 1429
Score = 40.6 bits (93), Expect = 0.064, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 1022 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 1074
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K + KV L W+ H
Sbjct: 1075 NIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKD-------------KVYLSWVPAHK 1121
Query: 130 GNQENEKVDRI 140
G NE+VD +
Sbjct: 1122 GIGGNEQVDNL 1132
>gi|114801233|gb|ABI79835.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 40.6 bits (93), Expect = 0.064, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 600 YVDGAANRETRLGKAGYVTDRGRQRAVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 654
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 655 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKERVYLAWVPAHKGI 701
Query: 132 QENEKVDRIARNAAVS 147
N +VD++ +
Sbjct: 702 GGNGQVDKLVSSGIRK 717
>gi|63098334|gb|AAY32382.1| pol protein [Human immunodeficiency virus 1]
gi|212383281|gb|ACJ25928.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 40.6 bits (93), Expect = 0.064, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A + G G+ + KG++KI+S E ++ + +V
Sbjct: 607 YVDEAANRETKTGKAGY---VTDKGRQKIVSLSETTNQKTELQAIQL----ALQDSGPEV 659
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 660 NIITDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIKKEKVYLSWVPAHK 706
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++ +
Sbjct: 707 GIGGNEQVDKLVSSGIRK 724
>gi|49574305|gb|AAT66823.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.064, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S + N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVSLTDA---TNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G +E+VD++ +
Sbjct: 541 GIGGDEQVDKLVSSGIRK 558
>gi|60652065|gb|AAX33136.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y +GA + G G + ++ + + A++ +V +
Sbjct: 596 YVEGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIRK 713
>gi|256010913|gb|ACU55313.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLPDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV L W H G
Sbjct: 651 VTDSQYA-------------LGIIQAIPDKSESELVSQIIEELIKKEKVYLAWXPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSTGIRK 713
>gi|14530264|gb|AAK65994.1|AF316544_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y +GA + G G + ++ I + A++ +V +
Sbjct: 596 YVEGAANRETKLGKAGYVTDKGKQKIINLTETTNQKTELHAIQLALQ-----DSGSEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDSSEAEIVNQIIEQLIRKEKVYLSWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|256011560|gb|ACU55636.1| pol protein [Human immunodeficiency virus 1]
Length = 823
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 582 YVDGAANRETKLGKAGYVTDRGRQKVITLTETTNQKTELHAIHLALQ-----BSGSEVNI 636
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + +K ++ K+ L W+ H G
Sbjct: 637 VTDSQYALGIIQAQPDRSEAELVNQXIEKLIEKD-------------KIXLSWVPAHKGI 683
Query: 132 QENEKVDRIARNAAVS 147
NE+VD+ +
Sbjct: 684 GGNEQVDKXVSSGIRK 699
>gi|256011250|gb|ACU55481.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S + T N+ + AI +V
Sbjct: 594 YVDGAANRETKLGRAGY---VTDRGKQKVVSLVD---TTNQKTELQAIYLALQDSGL-EV 646
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + E + K L W+ H
Sbjct: 647 NIVTDSQYALGIIQAQPDRSE-------------SELVSQIIEELIKKEKXYLAWVPAHK 693
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 694 GIGGNEQVDKLVSAGIXK 711
>gi|5802821|gb|AAD51797.1|AF164614_1 Gag-Pro-Pol protein [Homo sapiens]
Length = 1879
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 1385 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 1433
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 1434 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 1488
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 1489 AHTNLPGPLTKANEQADLLVSSALIKAQE 1517
>gi|3600067|gb|AAC63291.1| polymerase [Homo sapiens]
Length = 596
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 461 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 509
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 510 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 564
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 565 AHTNLPGPLTKANEQADLLVSSALIKAQE 593
>gi|27356948|gb|AAN34507.1| pol protein [Simian immunodeficiency virus]
Length = 657
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 4 KHLREVH-AYTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
+ L EV Y DG+ + + G G+ K KEK++S + L
Sbjct: 339 EPLPEVETYYIDGSANRDSKEGKAGY----WSKSKEKVVS----VQNTTNQQTELIALKL 390
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHK 119
K+ + TDS YV D T+ L + +E + +
Sbjct: 391 ALEDGGQKMNIITDSQYVMGIV--------------KDHPTMSESPLVQEIIELLKGKEE 436
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + W+ H G N ++DR+ S
Sbjct: 437 IYIDWVPAHKGIGGNTEIDRLVSAGIRS 464
>gi|13021822|gb|AAK11553.1|AF298587_1 polymerase [Homo sapiens]
Length = 956
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|13021825|gb|AAK11554.1|AF298588_1 polymerase [Homo sapiens]
Length = 956
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|5802814|gb|AAD51793.1|AF164611_1 Gag-Pro-Pol-Env protein [Homo sapiens]
Length = 2294
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 1385 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 1433
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 1434 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 1488
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 1489 AHTNLPGPLTKANEQADLLVSSALIKAQE 1517
>gi|5802819|gb|AAD51796.1|AF164613_1 Gag-Pro-Pol protein [Homo sapiens]
Length = 1755
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 1385 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 1433
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 1434 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 1488
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 1489 AHTNLPGPLTKANEQADLLVSSALIKAQE 1517
>gi|52000773|sp|P63135|POK12_HUMAN RecName: Full=HERV-K_1q22 provirus ancestral Pol protein; AltName:
Full=HERV-K(III) Pol protein; AltName: Full=HERV-K102
Pol protein; Includes: RecName: Full=Reverse
transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H; Short=RNase H; Includes: RecName:
Full=Integrase; Short=IN
Length = 1459
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|52000839|sp|Q9BXR3|POK2_HUMAN RecName: Full=HERV-K_7p22.1 provirus ancestral Pol protein;
AltName: Full=HERV-K(C7) Pol protein; AltName:
Full=HERV-K(HML-2.HOM) Pol protein; AltName:
Full=HERV-K108 Pol protein; Includes: RecName:
Full=Reverse transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H; Short=RNase H; Includes: RecName:
Full=Integrase; Short=IN
gi|4456990|gb|AAD21097.1| polymerase [Homo sapiens]
gi|9558704|gb|AAF88167.1| polymerase [Homo sapiens]
Length = 956
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|4185947|emb|CAA76885.1| pol protein [Human endogenous retrovirus K]
Length = 872
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 378 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 426
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 427 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 481
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 482 AHTNLPGPLTKANEQADLLVSSALIKAQE 510
>gi|4185939|emb|CAA76879.1| pol protein [Human endogenous retrovirus K]
Length = 872
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 378 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 426
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 427 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 481
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 482 AHTNLPGPLTKANEQADLLVSSALIKAQE 510
>gi|118444199|ref|YP_877651.1| ribonuclease HI [Clostridium novyi NT]
gi|118134655|gb|ABK61699.1| ribonuclease HI [Clostridium novyi NT]
Length = 234
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 6 LREV-HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
+++ H Y DG+ + + +++ G K I G E + + A + +++
Sbjct: 49 PKDIPHFYVDGSYNIEIQKYAYALVMVENGVVKYIENGGAENNSKKDVRQIAGELKASIR 108
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + + G +++ + + V
Sbjct: 109 SLKY-AAEHNIKNILIIHDYVGVCYHATGVWKRKEESSEIYYNEFNKIVKDNDINVTFVK 167
Query: 125 IKGHAGNQENEKVDRIARNA 144
+ H G+ NE VD A+ A
Sbjct: 168 VDSHTGDLFNEIVDEFAKYA 187
>gi|49574329|gb|AAT66834.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|49574331|gb|AAT66835.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|212541456|ref|XP_002150883.1| hypothetical protein PMAA_060540 [Penicillium marneffei ATCC 18224]
gi|210068182|gb|EEA22274.1| hypothetical protein PMAA_060540 [Penicillium marneffei ATCC 18224]
Length = 370
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
V + W+ GH + NE+ D+ A+ A
Sbjct: 174 RPVTIQWVPGHNRVEGNEQADQAAKPTASK 203
>gi|255984710|gb|ACU46427.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y D A + G G + ++ + + A++ +V +
Sbjct: 41 YVDXAANRETKLGKAGYVTDRGRQKVVPITDTTNQKTELQAIHLALQ-----DSGAEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGIRK 158
>gi|222618468|gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
Length = 639
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
L V TDGA S N GGWG ++R + + +G +
Sbjct: 399 RRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 458
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A+K + + S + S ++ Q+ +++ + V
Sbjct: 459 AIKTASERGM---SRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVS 515
Query: 122 LYWIKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 516 Y------SPRSCNKVAHELA 529
>gi|126273599|ref|XP_001363913.1| PREDICTED: similar to secretory pathway component Sec31B-1
[Monodelphis domestica]
Length = 2073
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Query: 8 EVHAYTDGAC--SGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
++ +T+G+ S G V+ + I E T+ + + A+ A
Sbjct: 1742 DLLFFTNGSSFMSPQGRRAGAAVV--DHTGQVIWDASLPEGTSAQKAELIALAAALWAAK 1799
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYW 124
+V +YTDS Y +++ G+ TS + V +++ + H V +
Sbjct: 1800 DKQVTIYTDSRYAFSTLHVHAPIYRERGFVTSAGRPVAHLEDIQDLLAAVWEPHAVAVVH 1859
Query: 125 IKGHA 129
GH
Sbjct: 1860 TPGHQ 1864
>gi|21913262|gb|AAM81191.1| pol protein [Oryctolagus cuniculus]
Length = 863
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGA GG G + + +++ + ++
Sbjct: 455 VTIFTDGA------KGGTGAAIFNNQRYFVLTASPSPQHAELAIITTVLRRE-----SAP 503
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + +DS+YV + +V + + + +H + + I+ H
Sbjct: 504 MNILSDSAYVVNAVQMLATQCLIL-----KSSSVYSYLSENQGLLNQREHAIYIGHIRAH 558
Query: 129 AGNQ-----ENEKVDR-----IARNAAVSFKN 150
+ N D +A A K
Sbjct: 559 SNLPGPLTRGNMMADHYSRFLLASTALEQAKE 590
>gi|256011076|gb|ACU55394.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG + G G ++ + + A++ +V +
Sbjct: 604 YVDGXANRETKLGKAGYXTDKGRQKIVXXXXXXNQKTELQAIYLALQ-----DSGLEVNI 658
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 659 VTDSQYA-------------LGIXQAQPDKSESXLVSQIIEQLIKKEKVYLAWVPAHKGI 705
Query: 132 QENEKVDRIARNAAV 146
NE+VD++ +
Sbjct: 706 GGNEQVDKLVSSGIR 720
>gi|1899038|gb|AAB49923.1| Pol polyprotein [Feline immunodeficiency virus]
Length = 1150
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G KGK + E +N R E+MA + AL + +
Sbjct: 625 YIDGG--RKKGQSAKAAYWTDKGK---WEVMQIEGSNQRAEVMALLMALRSGGEEMNI-- 677
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ Q + E + + + W+ GH G
Sbjct: 678 VTDSQYILNILRQKPDLMEGL--------------WQEILEEIEKKVAIFIDWVPGHKGI 723
Query: 132 QENEKVDRI 140
N +VD +
Sbjct: 724 PGNTEVDNL 732
>gi|51980735|gb|AAU20798.1| pol protein [Feline immunodeficiency virus]
Length = 1150
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG G KGK + E +N R E+MA + AL + +
Sbjct: 625 YIDGG--RKKGQSAKAAYWTDKGK---WEVMQIEGSNQRAEVMALLMALRSGGEEMNI-- 677
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y+ Q + E + + + W+ GH G
Sbjct: 678 VTDSQYILNILRQKPDLMEGL--------------WQEILEEIEKKVAIFIDWVPGHKGI 723
Query: 132 QENEKVDRI 140
N +VD +
Sbjct: 724 PGNTEVDNL 732
>gi|237826274|gb|ACR20933.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKKAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|49574341|gb|AAT66840.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|68522135|gb|AAY98722.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAANRETKLGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQ-----DSGPEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L + H G
Sbjct: 646 VTDSQYA-------------LGIIQAQPDKSESEIVNQIIEQLIKKERVYLSRVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 693 GGNEQVDKLVSSGIRK 708
>gi|242821171|ref|XP_002487626.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712547|gb|EED11972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 372
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
K + + + + W+ GHA ENE D + A S
Sbjct: 176 WPLRKRLPHTKSGSIQIRWVPGHAKIPENEAADLTTKEGAASI 218
>gi|149182905|ref|ZP_01861364.1| hypothetical protein BSG1_01465 [Bacillus sp. SG-1]
gi|148849408|gb|EDL63599.1| hypothetical protein BSG1_01465 [Bacillus sp. SG-1]
Length = 217
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 38/150 (25%), Gaps = 22/150 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRY---------KGKEKIISGGEKETTNNRMELMAA 56
+ Y DG G G+++ Y + EK+
Sbjct: 71 PENITVYFDGGYDKENALAGLGMVIYYQKGGVNYRVRKNEKLHELENNNEAEYAALYSCM 130
Query: 57 IKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ ++ DS V K +++ + E
Sbjct: 131 QLLEEMGVHHVPCVVKGDSQVVLKQLEGEWPCYEET-----------LNSWLDRIEEKMK 179
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
+ + ++N++ D++A A
Sbjct: 180 TLGIKPIYEA--INRKQNKEADQLANQAMQ 207
>gi|312601820|gb|ADQ92468.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+V+++
Sbjct: 642 GGNEQVNKLVSAGIRK 657
>gi|304384148|ref|ZP_07366601.1| ribonuclease H [Prevotella marshii DSM 16973]
gi|304334775|gb|EFM01052.1| ribonuclease H [Prevotella marshii DSM 16973]
Length = 177
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
D ACSGNPGP + + G+E G TNN E +A + AL ++ V
Sbjct: 50 VDAACSGNPGPMEYRAVDLATGEEVFHYGPV-HGTNNIGEFLAIVHALALMEQRHIVDKT 108
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
S + K+ + + + + + + S KV +
Sbjct: 109 IYSDSYNAILWVHKKQCKTTLKRNEKTEKLYEVIARAEQWLKSHAVKVPIVKW 161
>gi|9628896|ref|NP_043924.1| gag-pol polyprotein [Snakehead retrovirus]
gi|1335769|gb|AAC54861.1| gag-pol polyprotein [Snakehead retrovirus]
Length = 2017
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 12 YTDGACSGNPGPGGW--GVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ + GG+ G + K+ + G + + ++ + A++ L+ +
Sbjct: 1262 WIDGSRYWDHDKGGYVTGWAALREDKKNQLGGALEGHVSAQVAELVALREALRLQR--PL 1319
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSD---KKTVKNIDLWMKFVEASAQHKVDLYWIK 126
LYTDS+YV ++++ W++ G +D + + +E + + + +K
Sbjct: 1320 TLYTDSTYVLGICTKYLAVWKRRGMVNADGSQISNQNILQEIWQLIEHDSTQTLGIVKVK 1379
Query: 127 GHAGNQ-------ENEKVDRIARNAAVS 147
H + N VD+ A+ A
Sbjct: 1380 AHTQRKCSTHEQQLNNDVDQPAKQYAKE 1407
>gi|52000847|sp|Q9WJR5|POK3_HUMAN RecName: Full=HERV-K_19q12 provirus ancestral Pol protein; AltName:
Full=HERV-K(C19) Pol protein; Includes: RecName:
Full=Reverse transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H; Short=RNase H; Includes: RecName:
Full=Integrase; Short=IN
Length = 959
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + KE++I + R EL+A I L
Sbjct: 465 NALTVFTDGSSN---GKAAY-----TGPKERVIKTQY--QSAQRAELVAVITVLQDFDQ- 513
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 514 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 568
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 569 AHTNLPGPLTKANEQADLLVSSALIKAQE 597
>gi|4185943|emb|CAA76882.1| pol protein [Human endogenous retrovirus K]
Length = 875
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + KE++I + R EL+A I L
Sbjct: 381 NALTVFTDGSSN---GKAAY-----TGPKERVIKTQY--QSAQRAELVAVITVLQDFDQ- 429
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 430 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 484
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 485 AHTNLPGPLTKANEQADLLVSSALIKAQE 513
>gi|313618216|gb|EFR90290.1| ribonuclease HI [Listeria innocua FSL S4-378]
Length = 42
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 10 HAYTDGACSGNPGPGGWGVLLR 31
+ DGA +GNPGP G G++L+
Sbjct: 2 EVFVDGASAGNPGPSGAGIVLK 23
>gi|322711855|gb|EFZ03428.1| ATP-dependent DNA helicase PIF1 [Metarhizium anisopliae ARSEF 23]
Length = 1829
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 10/130 (7%)
Query: 8 EVHAYTDGACSGNPGPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ Y+DG+ S G G+G + + + +G E A++ A
Sbjct: 139 SLVVYSDGSLSP-SGAAGYGYAVHQNRRSVCQGAGRLGPAEVFDAEAKGALEGFKAALRL 197
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ A K ++ WI
Sbjct: 198 --------PQSATQRIVVCFDNIAAAACLRGKPSDSSQRVFLTFQALAKTHRKTEVRWIP 249
Query: 127 GHAGNQENEK 136
GH N +
Sbjct: 250 GHTEIPGNAR 259
>gi|242788649|ref|XP_002481263.1| hypothetical protein TSTA_040230 [Talaromyces stipitatus ATCC
10500]
gi|218721410|gb|EED20829.1| hypothetical protein TSTA_040230 [Talaromyces stipitatus ATCC
10500]
Length = 119
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV-SFKNKI 152
V L WI GH G N+ DR A+ A+ + +I
Sbjct: 76 DVTLRWIPGHEGVPRNKAADRAAKRTALIGARRQI 110
>gi|327458323|gb|AEA76601.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG + + G G + ++ + + A++ +V +
Sbjct: 441 YVDGXANRDTKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIR 557
>gi|327310689|ref|YP_004337586.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
gi|326947168|gb|AEA12274.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
Length = 193
Score = 40.6 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 11 AYTDGACSG-NPGPGG-WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
Y DGAC NPG G +G ++ +G ++ G + A
Sbjct: 5 VYFDGACEPVNPGGLGTYGYVIYDEGGRRLDRGYGVACHGDGCTNNVAEYVALREALRRA 64
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L D +G SQ + + + W + K ++ D + A+ V+
Sbjct: 65 KELGCD-EVEIRGDSQLVVRQIKGEWAVNSLKLMELKDEVEALLAGFARWSVEW------ 117
Query: 129 AGNQENEKVDRIARNA 144
+ N++ D +++ A
Sbjct: 118 VPREANKEADGLSQIA 133
>gi|255984942|gb|ACU46543.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 41 YVDGAANRETKLGKXGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEXNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSAGVR 157
>gi|290978653|ref|XP_002672050.1| predicted protein [Naegleria gruberi]
gi|284085623|gb|EFC39306.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 40.6 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 15/151 (9%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M+ +++ TDG+ N GG G++ K + + + + ++ + +
Sbjct: 5 MEEENM---IIATDGSFKDN--EGGIGIVTEKGEKINMNAFAAASSFDCEIQAIYIACKM 59
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
T + + + ++ + + + KV
Sbjct: 60 TKGNIQILTDSMASIKIIEGDRKTNNPYVKAIRKEKQRITLRHIKSHQVETQQMTHEEKV 119
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKNK 151
+ N + D A +NK
Sbjct: 120 LIQ---------LNNEADIEANRG-RKNRNK 140
>gi|289187306|gb|ADC92232.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRI 140
NE+ D++
Sbjct: 543 GGNEQXDKL 551
>gi|256010751|gb|ACU55232.1| pol protein [Human immunodeficiency virus 1]
Length = 869
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S E T N+ + AI +V
Sbjct: 600 YVDGAANRETKLGKAGY---VTDRGRQKVVSLTE---TTNQKTELHAIHLALQDSG-SEV 652
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ KV L W+
Sbjct: 653 NIVTDSQYALGIIQSQPDRSESELVNQIIEKLIEKD-------------KVYLSWVPAXK 699
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 700 GIGGNEQVDKLVSXGIRK 717
>gi|4206306|gb|AAD11615.1| prpol [Zea mays]
Length = 1317
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRY-KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ DG+ G G G VL+ K K ++ + TNN E A + L LK
Sbjct: 749 TVFCDGSW-GTFGAGAAAVLVSPSKVKTCYVAKLDFSCTNNIAEYEALLLGLRKLKAMGI 807
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
K SQ + K D K K +D+ + + V
Sbjct: 808 RRAVL------KTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEASFEGFSVKN------ 855
Query: 129 AGNQENEKVDRIARNAAVSF 148
+NE D +A++AA
Sbjct: 856 IPRGQNEHADLLAKSAAQGL 875
>gi|302393275|dbj|BAJ14348.1| pol protein [Simian immunodeficiency virus]
Length = 439
Score = 40.2 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DG+C+ G G + + + + ++TTN + EL A AL +++
Sbjct: 79 YVDGSCNRQSREGKAGYV---TNRGRDKAKLLEQTTNQQAELEAFYLALADSGPKANIIV 135
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+S YV + + + + + E + + + W+ H G
Sbjct: 136 --NSQYVMGIVAGQPTESE-------------SRLVNQIIEEMIKKEAIYVAWVPAHKGI 180
Query: 132 QENEKVDRIARNAAVS 147
N++VD +
Sbjct: 181 GGNQEVDHLVSQGIRQ 196
>gi|255567445|ref|XP_002524702.1| nuclease, putative [Ricinus communis]
gi|223536063|gb|EEF37721.1| nuclease, putative [Ricinus communis]
Length = 201
Score = 40.2 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 18/143 (12%)
Query: 14 DGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL----TALKYPCKV 69
DG+C G G G G + R E ++ E + A V
Sbjct: 47 DGSCKGREGKGSIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWSNV 106
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L D+ + + + K + + +L I H
Sbjct: 107 WLEGDAKTLLEIIVKRRKVRCAQMQRHVSDINLIIPELDNC--------------IVSHV 152
Query: 130 GNQENEKVDRIARNAAVSFKNKI 152
+ N D++A+ K KI
Sbjct: 153 YREGNRAADKLAQIGHQLQKPKI 175
>gi|169607779|ref|XP_001797309.1| hypothetical protein SNOG_06952 [Phaeosphaeria nodorum SN15]
gi|160701489|gb|EAT85603.2| hypothetical protein SNOG_06952 [Phaeosphaeria nodorum SN15]
Length = 1154
Score = 40.2 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 8 EVHAYTDGACSGNP---GPGGWGVLLRYKGKEKI---------ISGGEKETTNNRMELMA 55
+ + DGAC GN +GV + + E R L
Sbjct: 637 SLVVHIDGACRGNGTSSAKASYGVYFGPESSHNTKGILPQSLPQTSTRAEIEALRQALDV 696
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNID---LWMKFV 112
+ + + TDSS++ S+W+ +W +N S+ + V + + +
Sbjct: 697 ICRVTDQDFTLTYIKIATDSSFLVNAMSRWMDQWIENDDVGSNGQRVAHFEVLKELHDKL 756
Query: 113 EASAQHKVDLYWI-KGHAGNQENEKVD 138
+ + N + D
Sbjct: 757 DYMEYSDEGGRHVQFWLIPRDLNGEAD 783
>gi|148705007|gb|EDL36954.1| ribonuclease H1, isoform CRA_b [Mus musculus]
Length = 199
Score = 40.2 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 8 EVHAYTDGACSGNPGP---GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
V YTDG CS N G GV + G + + + + +
Sbjct: 139 SVIVYTDGCCSSNGRKRARAGIGVYWGPGHP--FLQGHHASQGSEHQQAGSVHRQHVHHQ 196
Query: 65 Y 65
+
Sbjct: 197 W 197
>gi|20279456|gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 40.2 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG-----GEKETTNNRMELMAA 56
L V TDGA S N GGWG ++R + + +G ++ + + AA
Sbjct: 1374 RRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 1433
Query: 57 IKALTALKYPCKVLLYTDS---SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
+ + ++ L TDS Y + ++ + G +
Sbjct: 1434 AIKTASERGMSRIELETDSMMLRYSPRSCNKVAHELAAYGCNLQTVSSWAGCPP 1487
>gi|325955836|ref|YP_004286446.1| ribonuclease HI [Lactobacillus acidophilus 30SC]
gi|325332401|gb|ADZ06309.1| ribonuclease HI [Lactobacillus acidophilus 30SC]
Length = 99
Score = 40.2 bits (92), Expect = 0.084, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIK 126
+L DS YV +Q + + +KN+ W + W K
Sbjct: 17 HLLFVLDSKYVLNAINQHWLQGWKKRGWKRSSGPLKNVPEWKELDRLLQSFPDSTFEWTK 76
Query: 127 GHAGNQENEKVDRIARNAAVSF 148
GHA N+ NE VD
Sbjct: 77 GHANNRGNEYVDHALNRYMDEH 98
>gi|289187093|gb|ADC92126.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.2 bits (92), Expect = 0.084, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 629 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 657
>gi|256010978|gb|ACU55345.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 40.2 bits (92), Expect = 0.084, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 694 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 722
>gi|13095346|gb|AAK12237.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 40.2 bits (92), Expect = 0.084, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 443 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 495
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W H
Sbjct: 496 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWGPAHK 542
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 543 GIGGNEQVDKLVSAGIRK 560
>gi|256011350|gb|ACU55531.1| pol protein [Human immunodeficiency virus 1]
Length = 944
Score = 40.2 bits (92), Expect = 0.085, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 537 YVDGAANRETKLGKAGYVTDRGRQKXVPLTDTTNQKTELQAIHLALQ-----DSGXEVNI 591
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
T S Y G + ++ + + + KV L W+ H G
Sbjct: 592 VTXSQYA-------------LGIIQAQPDKSESXLVSQIIEQLIKKEKVYLAWVPAHKGI 638
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 639 GGNEQVDKLVSTGIR 653
>gi|18266640|gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|31433656|gb|AAP55140.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 40.2 bits (92), Expect = 0.085, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 517 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 574
Query: 59 ALTALKYPC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V Q + T+ ++ V+ ++ +E +
Sbjct: 575 GLRIAISLSIRRLIVRGDSQLVVNQVMQEWSCL--DDNMTAYRQEVRKLEDKFDGLELT- 631
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 632 -----------HVLRHNNEAADRLAN 646
>gi|238635826|gb|ACR53026.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y +GA + G G + ++ + + A++ +V +
Sbjct: 599 YVNGAANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 653
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 654 VTDSQYA-------------LGIIQAQPDKSESEVVNQIIEQLIQKERVYLAWVPAHKGI 700
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 701 GGNEQVDKLVSTGIRK 716
>gi|52080707|ref|YP_079498.1| hypothetical protein BL05230 [Bacillus licheniformis ATCC 14580]
gi|52786080|ref|YP_091909.1| hypothetical protein BLi02336 [Bacillus licheniformis ATCC 14580]
gi|319645334|ref|ZP_07999567.1| hypothetical protein HMPREF1012_00600 [Bacillus sp. BT1B_CT2]
gi|52003918|gb|AAU23860.1| hypothetical protein BL05230 [Bacillus licheniformis ATCC 14580]
gi|52348582|gb|AAU41216.1| YpeP [Bacillus licheniformis ATCC 14580]
gi|317393143|gb|EFV73937.1| hypothetical protein HMPREF1012_00600 [Bacillus sp. BT1B_CT2]
Length = 219
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 21/146 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYK--------GKEKIISGGEKETTNNRMELMAAI 57
E+ Y DG+ G G+++ Y K K A
Sbjct: 72 PDEITVYFDGSYDKESQLAGLGIVIYYSLGGERYRLRKNKSFRLTTNNEAEYAALYEAVK 131
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
+ V++ DS +Q W S L + +
Sbjct: 132 ELRDLGASRNSVVIKGDS---LVVLNQLEGSWPCYDPVHSKWLDRIESQLQKLKLTPTYI 188
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARN 143
++N++ D++A+
Sbjct: 189 ----------QISRKDNKEADQLAKK 204
>gi|73662614|ref|YP_301395.1| RNase H [Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|72495129|dbj|BAE18450.1| putative RNase H [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 135
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 13/134 (9%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D A +GNPG V++ + + + + N+ E +
Sbjct: 3 KIYFDAATAGNPGESASAVVIITEEERFHYTKSLGQMDNHSAEWAS--------FQFALE 54
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ ++ + K+ + +E + + + W+
Sbjct: 55 CAIAHNITTGLVYTDSKLIEDSFNRGNVKNEKFKSYYNEIIKLEQKFEL-LFVRWVP--- 110
Query: 130 GNQENEKVDRIARN 143
+N++ + A+
Sbjct: 111 -RNQNKEANHHAKQ 123
>gi|256011734|gb|ACU55723.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +GK+K++S E + + +V
Sbjct: 596 YVDGAANRETKLGKAGY---VTDRGKQKVVSLTETTNQKTELHAIXL----ALQDSGSEV 648
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + ++ KV L W+ H
Sbjct: 649 NIVTDSQYXLGIIQAQPDRSESELVNQIIEXLIEKD-------------KVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
NE+VD + N
Sbjct: 696 XIGGNEQVDXLVSNGIRK 713
>gi|321466291|gb|EFX77287.1| hypothetical protein DAPPUDRAFT_247862 [Daphnia pulex]
Length = 211
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 122 LYWIKGHAGNQENEKVDRIA-RNAAVSFKNK 151
L WI H G + NE DR+A A N+
Sbjct: 67 LAWIPSHTGIEGNETADRLASNECANPSGNQ 97
>gi|47118241|gb|AAT11220.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + A++ V +
Sbjct: 540 YVDGASNRETKQGKAGYVTDRGRQKVVPLTETTNQXAELHAXQLALQ-----DSGSXVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS Y G + ++ + + V L W+ H G
Sbjct: 595 VXDSXYA-------------LGIIQAQPDKSESGLVNQIIEQLXEXEXVYLSWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE++D++
Sbjct: 642 GGNEQIDKLXSAGIRK 657
>gi|3600069|gb|AAC63292.1| polymerase [Homo sapiens]
Length = 572
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 445 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 493
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 494 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 548
Query: 127 GHAGNQE-----NEKVDRIARNA 144
H NE+ D + +A
Sbjct: 549 AHTNLPGPLTKANEEADLLVSSA 571
>gi|52000771|sp|P63133|POK6_HUMAN RecName: Full=HERV-K_8p23.1 provirus ancestral Pol protein;
AltName: Full=HERV-K115 Pol protein; Includes: RecName:
Full=Reverse transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H; Short=RNase H; Includes: RecName:
Full=Integrase; Short=IN
Length = 956
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRVVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|13095314|gb|AAK12222.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 40.2 bits (92), Expect = 0.089, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTNQKTELRAIHLALQ-----DSGLEVNI 497
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W H G
Sbjct: 498 VTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWGPAHKGI 544
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 545 GGNEQVDKLVSAGIRK 560
>gi|224069346|ref|XP_002302961.1| predicted protein [Populus trichocarpa]
gi|222844687|gb|EEE82234.1| predicted protein [Populus trichocarpa]
Length = 406
Score = 40.2 bits (92), Expect = 0.089, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 13/153 (8%)
Query: 1 MDSKHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEK--IISGGEKETTNNRMELMAAI 57
M S + DG+ PGP G G +LR I S +N EL A I
Sbjct: 259 MQSPPMTNRFKWNVDGSSIEKPGPSGIGGVLRNHHGILLGIFSLSVGILDSNVAELRAVI 318
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ 117
KA+ C + + H ++ + + AS
Sbjct: 319 KAIELSASNCFLH------HKHIIIESDSANVISWMNNLHNRPWIHHKLFSSAQRLASCF 372
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+ + + + N D +A+ +
Sbjct: 373 DSITYTY----SYRESNHMSDHLAKQGVHRISD 401
>gi|242808962|ref|XP_002485270.1| hypothetical protein TSTA_047630 [Talaromyces stipitatus ATCC
10500]
gi|218715895|gb|EED15317.1| hypothetical protein TSTA_047630 [Talaromyces stipitatus ATCC
10500]
Length = 134
Score = 40.2 bits (92), Expect = 0.091, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+V ++WI H G + NE+ D A+ A
Sbjct: 41 QVTIHWILAHQGIKGNERADIAAKEA 66
>gi|237633292|gb|ACR05968.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|110288963|gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISG-----GEKETTNNRMELMAA 56
L V TDGA S N GGWG ++R + + +G ++ + + AA
Sbjct: 1370 RRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 1429
Query: 57 IKALTALKYPCKVLLYTDS---SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
+ + ++ L TDS Y + ++ + G +
Sbjct: 1430 AIKTASERGMSRIELETDSMMLRYSPRSCNKVAHELAAYGCNLQTVSSWAGCPP 1483
>gi|49574226|gb|AAT66786.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>gi|289187248|gb|ADC92203.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGTEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + + + + + K W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSXSELVSQIIEQLIKKEKXYXAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D++
Sbjct: 642 GGNEQXDKLVSAGIRK 657
>gi|288558557|dbj|BAI68335.1| polyprotein [Human immunodeficiency virus 1]
Length = 321
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 192 YVDGAXNRETKLGKAGY--------------------VTDRGRQKIVSLTETTNQKTELH 231
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + E + KV L W+ H
Sbjct: 232 AIYLALQDSGLEVNIVSDSQYALGIIQAQPDRSESEVVNQIIEELIKKEKVYLSWVPAHK 291
Query: 130 GNQENEKVDRIARNAAV 146
G NE++D++ +
Sbjct: 292 GIGGNEQIDKLVSSGIR 308
>gi|170067777|ref|XP_001868615.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863835|gb|EDS27218.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 443
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKG 34
V+ YTDG+C GN G GV
Sbjct: 119 VYVYTDGSCEGNGTAAARAGMGVYFDEGH 147
>gi|288187558|gb|ADC42273.1| pol protein [Human immunodeficiency virus 1]
Length = 569
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAINLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPARKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVGAGIRK 558
>gi|237828062|gb|ACR21824.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|306478331|gb|ADM89540.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.2 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGVEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAXPDKSESELVSQIIEELIKKEXVYLAWVXAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 543 GGNEQVDKLVSTGIR 557
>gi|108711454|gb|ABF99249.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1552
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 998 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 1055
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1056 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLENKFDGLELT- 1112
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1113 -----------HVLRHNNEAADRLAN 1127
>gi|50355721|gb|AAT75246.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1512
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 958 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 1015
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1016 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLENKFDGLELT- 1072
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1073 -----------HVLRHNNEAADRLAN 1087
>gi|237826790|gb|ACR21191.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|237826124|gb|ACR20858.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|134284764|gb|ABO69459.1| pol [Feline immunodeficiency virus]
Length = 1146
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G G E E +N E A AL A ++
Sbjct: 608 YIDGGRKKGQKARAG------RWKNNTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 661
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 662 --TDSQYVYNMVM--------------SRPEPLDPLWKEIIEELQKKEAIFIDWVPGHKN 705
Query: 131 NQENEKVDRI 140
N++VD +
Sbjct: 706 IPGNKEVDEL 715
>gi|322710455|gb|EFZ02030.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1566
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 31/124 (25%), Gaps = 9/124 (7%)
Query: 22 GPGGWG-VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80
G G+G V+ + +G E A++ L A +
Sbjct: 6 GAAGYGYVVHQSGRSVCQGAGRLGPAEVFDAEAKGALEGLKAALRL--------PQSGTQ 57
Query: 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRI 140
+ A K ++ WI GH NE+ D
Sbjct: 58 RIVVCLDNIAAAKCLRGKPSDSSQRVFLTFQALAKTHRKTEVRWIPGHTKIPGNEQADIP 117
Query: 141 ARNA 144
A+
Sbjct: 118 AKTG 121
>gi|321472624|gb|EFX83593.1| hypothetical protein DAPPUDRAFT_239595 [Daphnia pulex]
Length = 205
Score = 40.2 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 121 DLYWIKGHAGNQENEKVDRIA 141
L WI H G ++NE+ DR+A
Sbjct: 50 RLTWIPSHTGMEDNERADRLA 70
>gi|294931605|ref|XP_002779950.1| hypothetical protein Pmar_PMAR025318 [Perkinsus marinus ATCC 50983]
gi|239889684|gb|EER11745.1| hypothetical protein Pmar_PMAR025318 [Perkinsus marinus ATCC 50983]
Length = 119
Score = 40.2 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
KV L W GH G Q NE VD++A
Sbjct: 31 KVQLNWCPGHEGVQWNEAVDQLANTGRKQL 60
>gi|49574335|gb|AAT66837.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.2 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V++
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVII 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQIIEQLLKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|49574264|gb|AAT66803.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + +G++K++S TTN + EL A AL +V
Sbjct: 441 YVDGAANRETKLGKAGY---ITDRGRQKVVS--LTNTTNQKTELQAIHLALQDSGL--EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y G + ++ + + + KV L W+ H
Sbjct: 494 NIVTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKREKVYLTWVPAHT 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE V+++ +
Sbjct: 541 GIGGNEPVNKLVSSGIRK 558
>gi|31559662|dbj|BAC77486.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1439
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 1032 YVDGAANRETKLGRAGYVTNKGRQKVITLTDTTNQKTELQAINLALQ-----DSGVEVNI 1086
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 1087 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 1133
Query: 132 QENEKVDRIARNAAV 146
NE++D++
Sbjct: 1134 GGNEQIDKLVSAGIR 1148
>gi|256010837|gb|ACU55275.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +
Sbjct: 596 YVDGAANXETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEXXX 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPXHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++ +
Sbjct: 698 GGNEQVDKLVSSGIRK 713
>gi|83722752|gb|ABC41650.1| pol protein [Feline immunodeficiency virus]
Length = 1136
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 12 YTDGA-CSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
Y DG G G E E +N E A AL A ++
Sbjct: 606 YIDGGRKKGQKARAG------RWKNNTEWQIMEIEGSNQVAEAQALNMALKAGSERMNII 659
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
TDS YV+ + + E + + + W+ GH
Sbjct: 660 --TDSQYVYNMVM--------------SRPEPLDPLWKEIIEELQKKEAIFIDWVPGHKN 703
Query: 131 NQENEKVDRI 140
N++VD +
Sbjct: 704 IPGNKEVDEL 713
>gi|269124303|ref|YP_003297673.1| ribonuclease H [Thermomonospora curvata DSM 43183]
gi|268309261|gb|ACY95635.1| ribonuclease H [Thermomonospora curvata DSM 43183]
Length = 284
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+ GH+G+ NE D +A A
Sbjct: 224 RFEHVAGHSGHPLNEAADGLAGLA 247
>gi|256011660|gb|ACU55686.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
KV L W+ H G NE+VD++ N
Sbjct: 684 KVYLSWVPAHKGIGGNEQVDKLVSNGIRKI 713
>gi|288187640|gb|ADC42312.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLEKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + ++ KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLISKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
ENE +D++
Sbjct: 642 GENEHIDKLVSAGIRK 657
>gi|260179758|gb|ACX34545.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 396
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G + ++ I + A++ +V +
Sbjct: 110 YVDGASNRETKLEKAGYVTNRGRQKVISLTDTTNQKTELQAIHLALQ-----DSGLEVNI 164
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + E + KV + W+ H G
Sbjct: 165 VTDSQYA-------------LGIIQAQPDKSESELVSAIIEELIKKDKVYMAWVPAHKGI 211
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 212 GGNEQVDKLVSAGIRK 227
>gi|149458721|ref|XP_001516339.1| PREDICTED: similar to truncated pol/envelope fusion protein
[Ornithorhynchus anatinus]
Length = 464
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 24 GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83
G+ + E S T+ + + A+ L + +Y DS Y
Sbjct: 284 AGYATVSSNAVNE---SEPLPSGTSAQKAELMALLRALELGKGLWLNVYMDSKYAFHILH 340
Query: 84 QWIKKWQQNGWKTSDKKT-VKNIDLWMKFVEASAQHKVDLYWIKGHAGN-----QENEKV 137
W++ G S ++++ ++ + GH + + N
Sbjct: 341 AHGVIWKERGLLRSKGSPVKHSMEILRLLAAVRLPKEIAVICCHGHQTDDSLVARGNNFA 400
Query: 138 DRIARNAAVSFKNKI 152
D +AR AA K+++
Sbjct: 401 DSMARQAAS--KDQL 413
>gi|70607450|ref|YP_256320.1| hypothetical protein Saci_1721 [Sulfolobus acidocaldarius DSM 639]
gi|68568098|gb|AAY81027.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 148
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 27/144 (18%)
Query: 12 YTDGACSG-NPG-PGGWGVLLR---------YKGKEKIISGGEKETTNNRMELMAAIKAL 60
Y DG C NPG +G ++ Y K S ++ ++
Sbjct: 5 YFDGLCEPKNPGGIATYGFVIILEDGNTVKGYGLASKPFSKDSTNNVAEYTGIICLMR-K 63
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ DS V + K+++ L+ K +E Q
Sbjct: 64 MIELKLSNPKIRGDSQLVIRQLRGEY-----------KVKSLRIKPLYEKALELVRQLNA 112
Query: 121 DLYWIKGHAGNQENEKVDRIARNA 144
+L W+ +ENE+ D+++R A
Sbjct: 113 ELEWVP----REENEEADQLSRVA 132
>gi|237828987|gb|ACR22285.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|301609174|ref|XP_002934156.1| PREDICTED: hypothetical protein LOC100488992 [Xenopus (Silurana)
tropicalis]
Length = 1158
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ E+ +TD A G G+G Y G+ N +A ++
Sbjct: 1003 PRPNEELQFFTDAA-----GSAGFGAY--YAGRWCAAPWPNAWGENKLTSNLAFLELFPI 1055
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + F+ + TS + V + + +
Sbjct: 1056 VVAVELWGAQLRNQ-SVVFFTDNMSVVMAITNLTSASRPVLKLLKHLVLRCLQLNVRFGA 1114
Query: 123 YWIKGHAGNQENEKVDRIAR 142
+ GH NE D ++R
Sbjct: 1115 KHVPGHT----NEIADSLSR 1130
>gi|296423793|ref|XP_002841437.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637676|emb|CAZ85628.1| unnamed protein product [Tuber melanosporum]
Length = 184
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARN 143
+V W+KG +G + NE+ R+AR
Sbjct: 159 QVRDEWVKGQSGVKGNEEAHRLARK 183
>gi|237632680|gb|ACR05662.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD +A
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLASQGIRQ 94
>gi|156539995|ref|XP_001599888.1| PREDICTED: similar to pol-like protein [Nasonia vitripennis]
Length = 963
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
+ L WI H NE DR A+ A+ +I
Sbjct: 864 FNIQLVWIPSHKNISGNEIADREAK-GALKLPLQI 897
>gi|21283052|ref|NP_646140.1| hypothetical protein MW1323 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486275|ref|YP_043496.1| hypothetical protein SAS1376 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|300911992|ref|ZP_07129435.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
gi|21204491|dbj|BAB95188.1| MW1323 [Staphylococcus aureus subsp. aureus MW2]
gi|49244718|emb|CAG43153.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|300886238|gb|EFK81440.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
Length = 133
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARE 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
+ S + ++ K + + DL ++
Sbjct: 59 LNVQNALLYTDSKIIADSIEAGYVK-----NANFKPYFDQIEI-------FEKDFDLLFV 106
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K ++N++ ++ A+ A K
Sbjct: 107 KW-IPREQNKEANQHAQQALYKLIKK 131
>gi|307213149|gb|EFN88665.1| hypothetical protein EAI_15637 [Harpegnathos saltator]
Length = 92
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ + L+W GH G NE D +A A S
Sbjct: 54 WKAFIKGLDISLFWTSGHKGILGNEIADGLAGLGARS 90
>gi|256011146|gb|ACU55429.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 688 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 716
>gi|57650390|ref|YP_186318.1| cell wall enzyme EbsB, putative [Staphylococcus aureus subsp.
aureus COL]
gi|87161806|ref|YP_494023.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195167|ref|YP_499968.1| hypothetical protein SAOUHSC_01443 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221555|ref|YP_001332377.1| hypothetical protein NWMN_1343 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509601|ref|YP_001575260.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221142057|ref|ZP_03566550.1| ribonuclease H [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253732073|ref|ZP_04866238.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733320|ref|ZP_04867485.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH130]
gi|258451092|ref|ZP_05699127.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|262048963|ref|ZP_06021842.1| hypothetical protein SAD30_1241 [Staphylococcus aureus D30]
gi|282927531|ref|ZP_06335148.1| ribonuclease HI [Staphylococcus aureus A9765]
gi|284024434|ref|ZP_06378832.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
132]
gi|294850758|ref|ZP_06791476.1| ribonuclease HI [Staphylococcus aureus A9754]
gi|297207908|ref|ZP_06924341.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|304380987|ref|ZP_07363644.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|57284576|gb|AAW36670.1| cell wall enzyme EbsB, putative [Staphylococcus aureus subsp.
aureus COL]
gi|87127780|gb|ABD22294.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202725|gb|ABD30535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374355|dbj|BAF67615.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368410|gb|ABX29381.1| possible ribonuclease H [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724189|gb|EES92918.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728860|gb|EES97589.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH130]
gi|257861147|gb|EEV83960.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|259162895|gb|EEW47458.1| hypothetical protein SAD30_1241 [Staphylococcus aureus D30]
gi|269940928|emb|CBI49312.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592071|gb|EFB97097.1| ribonuclease HI [Staphylococcus aureus A9765]
gi|294822398|gb|EFG38849.1| ribonuclease HI [Staphylococcus aureus A9754]
gi|296887482|gb|EFH26382.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|302751264|gb|ADL65441.1| cell wall enzyme EbsB-like protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340463|gb|EFM06400.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315197823|gb|EFU28157.1| possible ribonuclease H [Staphylococcus aureus subsp. aureus CGS01]
gi|320140321|gb|EFW32178.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142679|gb|EFW34482.1| putative cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314111|gb|AEB88524.1| Possible ribonuclease H [Staphylococcus aureus subsp. aureus T0131]
gi|329730548|gb|EGG66934.1| hypothetical protein SA21189_0371 [Staphylococcus aureus subsp.
aureus 21189]
Length = 133
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARE 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + K ++ K + + DL ++
Sbjct: 59 LNVQNA-----LLYTDSKLIADSIEAGYVKNANFKPYFDQIEI-------FEKDFDLLFV 106
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K ++N++ ++ A+ A K
Sbjct: 107 KW-IPREQNKEANQHAQQALYKLIKK 131
>gi|312602034|gb|ADQ92571.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 601 YVDGAANRETKLGKAGYVTNRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGSEVNI 655
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 656 VTDSQYA-------------LGIILAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 702
Query: 132 QENEKVDRIARNAAV 146
NE+V+++ N
Sbjct: 703 GGNEQVNKLVSNGIR 717
>gi|62734207|gb|AAX96316.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77548941|gb|ABA91738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1083 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPIGERLSYVLWIHFSASHNVAEYEALLH 1140
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 1141 GLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCL--DDTMTAYRQEVRKLEDKFDGLELT- 1197
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1198 -----------HVLRHNNEAADRLAN 1212
>gi|15924423|ref|NP_371957.1| cell wall enzyme EbsB [Staphylococcus aureus subsp. aureus Mu50]
gi|15927014|ref|NP_374547.1| hypothetical protein SA1266 [Staphylococcus aureus subsp. aureus
N315]
gi|148267921|ref|YP_001246864.1| ribonuclease HI-like protein [Staphylococcus aureus subsp. aureus
JH9]
gi|150393984|ref|YP_001316659.1| cell wall enzyme EbsB-like protein [Staphylococcus aureus subsp.
aureus JH1]
gi|156979752|ref|YP_001442011.1| hypothetical protein SAHV_1421 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253317093|ref|ZP_04840306.1| hypothetical protein SauraC_13339 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006222|ref|ZP_05144823.2| hypothetical protein SauraM_07125 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795511|ref|ZP_05644490.1| cell wall enzyme EbsB [Staphylococcus aureus A9781]
gi|258413321|ref|ZP_05681597.1| cell wall enzyme EbsB [Staphylococcus aureus A9763]
gi|258420573|ref|ZP_05683515.1| cell wall enzyme EbsB [Staphylococcus aureus A9719]
gi|258434655|ref|ZP_05688729.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|258444768|ref|ZP_05693097.1| cell wall enzyme EbsB [Staphylococcus aureus A8115]
gi|258447398|ref|ZP_05695542.1| cell wall enzyme EbsB [Staphylococcus aureus A6300]
gi|258449239|ref|ZP_05697342.1| cell wall enzyme EbsB [Staphylococcus aureus A6224]
gi|258454616|ref|ZP_05702580.1| cell wall enzyme EbsB [Staphylococcus aureus A5937]
gi|269203055|ref|YP_003282324.1| cell wall enzyme EbsB, putative [Staphylococcus aureus subsp.
aureus ED98]
gi|282892928|ref|ZP_06301163.1| ribonuclease HI [Staphylococcus aureus A8117]
gi|282927959|ref|ZP_06335568.1| ribonuclease HI [Staphylococcus aureus A10102]
gi|295407734|ref|ZP_06817518.1| hypothetical protein SMAG_02902 [Staphylococcus aureus A8819]
gi|296277311|ref|ZP_06859818.1| ribonuclease H [Staphylococcus aureus subsp. aureus MR1]
gi|297244607|ref|ZP_06928490.1| ribonuclease HI [Staphylococcus aureus A8796]
gi|13701231|dbj|BAB42526.1| SA1266 [Staphylococcus aureus subsp. aureus N315]
gi|14247204|dbj|BAB57595.1| similar to cell wall enzyme EbsB [Staphylococcus aureus subsp.
aureus Mu50]
gi|147740990|gb|ABQ49288.1| RNase HI [Staphylococcus aureus subsp. aureus JH9]
gi|149946436|gb|ABR52372.1| cell wall enzyme EbsB-like protein [Staphylococcus aureus subsp.
aureus JH1]
gi|156721887|dbj|BAF78304.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|257789483|gb|EEV27823.1| cell wall enzyme EbsB [Staphylococcus aureus A9781]
gi|257839885|gb|EEV64353.1| cell wall enzyme EbsB [Staphylococcus aureus A9763]
gi|257843521|gb|EEV67928.1| cell wall enzyme EbsB [Staphylococcus aureus A9719]
gi|257849016|gb|EEV72998.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257850261|gb|EEV74214.1| cell wall enzyme EbsB [Staphylococcus aureus A8115]
gi|257853589|gb|EEV76548.1| cell wall enzyme EbsB [Staphylococcus aureus A6300]
gi|257857227|gb|EEV80125.1| cell wall enzyme EbsB [Staphylococcus aureus A6224]
gi|257862999|gb|EEV85763.1| cell wall enzyme EbsB [Staphylococcus aureus A5937]
gi|262075345|gb|ACY11318.1| cell wall enzyme EbsB, putative [Staphylococcus aureus subsp.
aureus ED98]
gi|282590256|gb|EFB95336.1| ribonuclease HI [Staphylococcus aureus A10102]
gi|282764925|gb|EFC05050.1| ribonuclease HI [Staphylococcus aureus A8117]
gi|285817112|gb|ADC37599.1| Ribonuclease HI [Staphylococcus aureus 04-02981]
gi|294967399|gb|EFG43444.1| hypothetical protein SMAG_02902 [Staphylococcus aureus A8819]
gi|297178637|gb|EFH37883.1| ribonuclease HI [Staphylococcus aureus A8796]
gi|312829826|emb|CBX34668.1| cell wall enzyme ebsB [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129146|gb|EFT85141.1| hypothetical protein CGSSa03_06881 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727481|gb|EGG63937.1| EbsB protein [Staphylococcus aureus subsp. aureus 21172]
Length = 133
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDKQHYTYTHELGEMDNHTAEWAACIYALEHARE 58
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
++ + K ++ K + + DL ++
Sbjct: 59 LNVQNA-----LLYTDSKLIADSIEAGYVKNANFKPYFDQIEI-------FEKDFDLLFV 106
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
K ++N++ ++ A+ A K
Sbjct: 107 KW-IPREQNKEANQHAQQALYKLIKK 131
>gi|256011280|gb|ACU55496.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 685 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 713
>gi|256010841|gb|ACU55277.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 685 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 713
>gi|289187272|gb|ADC92215.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRI 140
N+++D++
Sbjct: 642 GGNDQIDKL 650
>gi|229661913|gb|ACQ84368.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLINKEKVYLAWVPAHKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+V+++
Sbjct: 698 GGNEQVNKLGSAGIRK 713
>gi|297190748|ref|ZP_06908146.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297150606|gb|EFH30684.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 279
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
K HAG+ NE D +A+
Sbjct: 223 FVHEKAHAGHPLNEAADSLAKLG 245
>gi|119613078|gb|EAW92672.1| hCG1808534 [Homo sapiens]
Length = 419
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 21/143 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + KE++ + R EL+A I L
Sbjct: 84 NALTVFTDGSSN---GKAAY-----TGPKERVTETQY--HSAQRAELVAVISVLQDFNQ- 132
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + K + ++ + I+
Sbjct: 133 -PINIVSDSAYVVQATKDVETALIKYSVDDQLNQLFKLLQQTVRKRSFPFY----ITHIR 187
Query: 127 GHAGNQE-----NEKVDRIARNA 144
H NE+ D + +A
Sbjct: 188 AHTNVPGTLTKANEQADLLVSSA 210
>gi|8778482|gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 32/134 (23%), Gaps = 15/134 (11%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTALKYPCKVL 70
TDGA GNP G ++R S + EL A L
Sbjct: 97 TDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQ 156
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
L + + + L + ++ H
Sbjct: 157 LEMEID-------SEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRI------SHVY 203
Query: 131 NQENEKVDRIARNA 144
+ N D +A A
Sbjct: 204 REANRLADGLANYA 217
>gi|4324898|gb|AAD17162.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 1020 YVDGAANRETKLGKAGCVTDRGRQKIVSLTETTNQKAELQAIQLALQ-----DSGAEVNI 1074
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + ++ L W+ H G
Sbjct: 1075 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERIYLSWVPAHKGI 1121
Query: 132 QENEKVDRIARNAAVS 147
+E+VD++ +
Sbjct: 1122 GGHEQVDKLVSSGIRK 1137
>gi|302894345|ref|XP_003046053.1| hypothetical protein NECHADRAFT_76507 [Nectria haematococca mpVI
77-13-4]
gi|256726980|gb|EEU40340.1| hypothetical protein NECHADRAFT_76507 [Nectria haematococca mpVI
77-13-4]
Length = 435
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 3 SKHLREVHAYTDGA--CSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
+ +TD + CS + P G V+ R+K I+ N + AI
Sbjct: 108 PSDSSRLALWTDASEKCSPSHVRSPAGIAVVFRHKFHWVRITARLNHFNNIAIAETQAIL 167
Query: 59 ALTALKYPC---------KVLLYTDSS--YVHKGFSQWIKKWQQNGWKTSDKKTVKNIDL 107
+V ++TDS ++ K + K +
Sbjct: 168 YALDYAVQQSAQLGVTLRQVEIFTDSQSALMNLARGTPKIKRKTREEVLKVNKALLESAK 227
Query: 108 WMKFVEASAQHKVDLYWIKGHAGNQENEKVD---RIARNAAVSF 148
+A ++L+W+ + NE D R+AR A
Sbjct: 228 KAMDALEAAGIGLELHWVP-RGKAKGNEFADEGSRLARLAMTDL 270
>gi|13095283|gb|AAK12211.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + KG++K++S + T N+ + AI +V
Sbjct: 441 YVDGAANRETKLGKAGY---VTDKGRQKVVSITD---TTNQKTELQAIHLALQDSGL-EV 493
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + + + + + KV L W+ H
Sbjct: 494 NIVTDSQYALGIIQAQPDQSE-------------SELVSQIIEQLIKKEKVYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+V ++
Sbjct: 541 GIGGNEQVAKLVSAGIRK 558
>gi|242763335|ref|XP_002340555.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218723751|gb|EED23168.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 189
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 106 DLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
K + + + + W+ GHA ENE D + A
Sbjct: 56 WPLRKRLPHTKSGSIQIRWVPGHAKIPENEAADLATKEGAT 96
>gi|242811375|ref|XP_002485735.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714074|gb|EED13497.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 938
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 14/140 (10%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLL-----RYKGKEKIISGGEKETTNNRMELMA 55
M K+ V YT+G+ G+ + + + ++ + E T+
Sbjct: 758 MAKKN-TRVIVYTNGS--------GYQGYISTSMVIPQLRRQMTECIDTEDTSTIYAAEG 808
Query: 56 AIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS 115
V V + +T + + + +
Sbjct: 809 CGIKFGLGTLLRFVEDDKRLQRVAIFSDSRSALQSIQNPNMASGQTYIRDCINLYWECKN 868
Query: 116 AQHKVDLYWIKGHAGNQENE 135
V L+WI GH G ENE
Sbjct: 869 NNIDVVLHWIPGHEGIPENE 888
>gi|170660041|gb|ACB28469.1| polyprotein [Ananas comosus]
Length = 630
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ TDG GWG +L+ + + + EK + K +
Sbjct: 160 IIIETDGCDL------GWGAVLKARSNKYSDTKEEKLCGYASGKYRERGKISSIDAELLA 213
Query: 69 VLLYTD----SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V+ D + + + + + + W+ F + + ++
Sbjct: 214 VIYALDAFKLNVINKHEITIRTDCEAITKFSHKNDEKASSRRRWINFQDRISITHINFEH 273
Query: 125 IKGHAGNQENEKVDRIAR 142
I+G ++N D+++R
Sbjct: 274 IRG----KDNFFPDQLSR 287
>gi|18699117|gb|AAL78395.1|AF413969_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 12 YTDGACSG--NPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ + + ETTN + EL A AL +V
Sbjct: 182 YVDGAANRETKTGKAGYA-----TDRGRQKVVPLTETTNQKTELHAIHLALQDSG--SEV 234
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ TDS Y + + +K ++ +V L W+ H
Sbjct: 235 NIVTDSQYALGIIQAQPDRSEPEIVSKIIEKLIEKE-------------RVYLSWVPAHK 281
Query: 130 GNQENEKVDRI 140
G NE++D++
Sbjct: 282 GIGGNEQIDKL 292
>gi|52353533|gb|AAU44099.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1645
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 14/137 (10%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRMELMAAIKALTALKYPCK 68
Y+DG+ S G +L + + T N AI
Sbjct: 1189 VMYSDGSWSHKG--AGVAAVLTSPNGVPIWYAARLQFDTTNNAVEYEAILLGLRKAKALG 1246
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + + S+ + ++ ++ + +D + ++ H
Sbjct: 1247 IR-----RLLIRTDSKLVAGHVDKSFEAKEEGMKRYLDAVRSMEKCFTGITIE------H 1295
Query: 129 AGNQENEKVDRIARNAA 145
+NE+ D +A++AA
Sbjct: 1296 LPRGQNEEADALAKSAA 1312
>gi|256011602|gb|ACU55657.1| pol protein [Human immunodeficiency virus 1]
Length = 868
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 685 KVYLAWVPAHKGIGGNEQVDKLVSXGIRK 713
>gi|62822725|gb|AAY15126.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 523
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 415 YTDGSCNRTSKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 469
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + + + W+ H G
Sbjct: 470 IVDSQYVMGII-------------AAQPTETESPIVKTIIEEMIKKEAIYVGWVPAHKGL 516
Query: 132 QENEKVD 138
N++VD
Sbjct: 517 GGNQEVD 523
>gi|3002878|gb|AAD03233.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 1117 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 1145
>gi|238494532|ref|XP_002378502.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|83771904|dbj|BAE62034.1| unnamed protein product [Aspergillus oryzae]
gi|220695152|gb|EED51495.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
Length = 101
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 6 LREV-HAYTDGACSGNPG---PGGWGVLLRYKGKEKIIS----GGEKETTNNRMELMAAI 57
+ + YTDG C N G V+ + + + TN R E+ A I
Sbjct: 1 MPYIMEIYTDGGCRRNGRSDAIGAAAVVFKNRFGKCTGWTRSLPRYPPPTNQRAEITAII 60
>gi|255984344|gb|ACU46244.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA G G + ++ + + A++ +V +
Sbjct: 41 YVDGAAXRETKLGKAGYVTDRGXQKVVSLTDTTNQKTELQAIXLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 143 GGNEQVDKLVSTGIR 157
>gi|256011494|gb|ACU55603.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 686 KVYLAWVPAHKGIGGNEQVDKLVSXGIRK 714
>gi|149259053|ref|XP_001478228.1| PREDICTED: probable Pol polyprotein-like [Mus musculus]
Length = 461
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 22/157 (14%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
L+ + YTDG+ G G + K++S E + +E +
Sbjct: 17 RRNPLKNGIVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLE 65
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + +DS YV + + G + + S + V
Sbjct: 66 VLKTFLEPLNIVSDSCYVVNAVN----LLEVAGVIKPSSRVANIFQQIQLVL-LSRRFPV 120
Query: 121 DLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
+ ++ H+G N+ D+ + A + + +
Sbjct: 121 YITHVRAHSGLPGPMALGNDLADKATKVVAAALSSPV 157
>gi|148704941|gb|EDL36888.1| mCG145559 [Mus musculus]
Length = 475
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 22/157 (14%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
L+ + YTDG+ G G + K++S E + +E +
Sbjct: 30 RRNPLKNGIVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLE 78
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + +DS YV + + G + + S + V
Sbjct: 79 VLKTFLEPLNIVSDSCYVVNAVN----LLEVAGVIKPSSRVANIFQQIQLVL-LSRRFPV 133
Query: 121 DLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
+ ++ H+G N+ D+ + A + + +
Sbjct: 134 YITHVRAHSGLPGPMALGNDLADKATKVVAAALSSPV 170
>gi|3600073|gb|AAC63294.1| polymerase [Homo sapiens]
Length = 572
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 445 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 493
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 494 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 548
Query: 127 GHAGNQE-----NEKVDRIARNA 144
H NE+ D + +A
Sbjct: 549 AHTNLPGPLTKANEQADLLVSSA 571
>gi|51491|emb|CAA34660.1| unnamed protein product [Mus musculus]
Length = 240
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 22/157 (14%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
L+ + YTDG+ G G + K++S E + +E +
Sbjct: 17 RRNPLKNGIVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLE 65
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + +DS YV + + G + + S + V
Sbjct: 66 VLKIFLEPLNIVSDSCYVVNAVN----LLEVAGVIKPSSRVANIFQQIQLVL-LSRRFPV 120
Query: 121 DLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
+ ++ H+G N+ D+ + A + + +
Sbjct: 121 YITHVRAHSGLPGPMALGNDLADKATKVVAAALSSPV 157
>gi|226348692|gb|ACO50665.1| pol protein [Human immunodeficiency virus 1]
Length = 751
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 30/138 (21%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ T R ++++ +
Sbjct: 373 YVDGAASRETKLGKAGY------------------VTDRGRQKVISLTDTTNQKTELQAI 414
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L K+ L W+ H
Sbjct: 415 HLAX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIYLAWVPAHK 472
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 473 GIGGNEQVDKLVSTGIRK 490
>gi|241259186|ref|XP_002404809.1| hypothetical protein IscW_ISCW017984 [Ixodes scapularis]
gi|215496710|gb|EEC06350.1| hypothetical protein IscW_ISCW017984 [Ixodes scapularis]
Length = 115
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNA 144
H++ WI GH G N +VDRIA A
Sbjct: 86 HRLAFQWIPGHFGLPGNAEVDRIAELA 112
>gi|51501|emb|CAA34662.1| unnamed protein product [Mus musculus]
Length = 434
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 32/165 (19%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
L+ + YTDG+ G G + K++S E + +E +
Sbjct: 17 RRNPLKNGIVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLE 65
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + +DS YV + + G + + S + V
Sbjct: 66 VLKTFLEPLNIVSDSCYVVNAVN----LLEVAGVIKPSSRVANIFQQIQLVL-LSRRFPV 120
Query: 121 DLYWIKGHAGNQ-----ENEKVDR----IA------RNAAVSFKN 150
+ ++ H+G N+ D+ +A AA +F N
Sbjct: 121 YITHVRAHSGLPGPMALGNDLADKATKVMAAALSSPVEAARNFHN 165
>gi|82751024|ref|YP_416765.1| cell wall enzyme [Staphylococcus aureus RF122]
gi|82656555|emb|CAI80977.1| probable cell wall enzyme [Staphylococcus aureus RF122]
Length = 133
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ +++ D A GNPG ++++ + + E N+ E A I AL +
Sbjct: 1 MAKIN--FDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHAR- 57
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
L ++ ++ + K ++ K + + + + + WI
Sbjct: 58 ----ELNVSNALLYTDSKLIADSIEAGYVKNANFKPYFDQIE----IFEKSFDLLFVKWI 109
Query: 126 KGHAGNQENEKVDRIARNAAVSFKNK 151
++N++ ++ A+ A K
Sbjct: 110 P----REQNKEANQHAQQALYKLIKK 131
>gi|154301133|ref|XP_001550980.1| hypothetical protein BC1G_10539 [Botryotinia fuckeliana B05.10]
gi|150856287|gb|EDN31479.1| hypothetical protein BC1G_10539 [Botryotinia fuckeliana B05.10]
Length = 337
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKG-KEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
YTD + + + G+GV L K ++ I K ++++ + +T
Sbjct: 180 TIYTDVSSTEDG--VGFGVGLTAKHASQQTIHHEMKNIGSSQLVYNGELLPVTKEVQYSN 237
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---VDLYWI 125
+ ++ +Q +KT + + S +K + L
Sbjct: 238 KISKPGLNFKVYSGNQAGLY----RFKTPSDNPEQCCQIRAIRASKSIINKGAPISLNRF 293
Query: 126 KGHAGNQENEKVDRIARNAAV 146
GH NE+ D +A+ A
Sbjct: 294 PGHTDVDGNEEADGLAKAAIK 314
>gi|3600064|gb|AAC63290.1| polymerase [Homo sapiens]
Length = 597
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKGRVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITHIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEEADLLVSSALLKAQE 594
>gi|62822723|gb|AAY15125.1| reverse transcriptase [Human immunodeficiency virus 2]
Length = 526
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG+C+ G G + + A++ +V +
Sbjct: 418 YTDGSCNRTSKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQ-----DSGPQVNI 472
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
DS YV + ++ + E + + + W+ H G
Sbjct: 473 IVDSQYVMGII-------------AAQPTETESPIVKTIIEEMIKKEAIYVGWVPAHKGL 519
Query: 132 QENEKVD 138
N++VD
Sbjct: 520 GGNQEVD 526
>gi|12657810|gb|AAK01033.1|AF301156_2 pol protein [Simian immunodeficiency virus]
Length = 990
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
+TDG CS G G G + +E + E +N + EL + AL ++ L
Sbjct: 576 WTDGGCSRKLGAGKAGWINSKGEEEVVN---LHEGSNQQAELTGVLLALKHGPK--RMNL 630
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + A+ + + W H G
Sbjct: 631 VTDSLYALGIITGQPYDQLPSS-------------RGEIIQAGMAKEAIHVAWCPAHKGI 677
Query: 132 QENEKVDR 139
NE +D+
Sbjct: 678 GGNELIDQ 685
>gi|5763675|emb|CAB53238.1| POL protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 22/139 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y +GA + G G+ +R T +
Sbjct: 598 YVNGAANRETKLGKAGY--------------------VTDRGRQKVVSLTETTNQKTELQ 637
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
++ F+ G + ++ + E + KV L W+ H
Sbjct: 638 AIHLPLQDSGSEFNIVTDSQYALGIIQAQPDRSESEVVNHIIEELIKKDKVYLSWVPAHK 697
Query: 130 GNQENEKVDRIARNAAVSF 148
G NE+VD++ N
Sbjct: 698 GIGGNEQVDKLVSNGIRRI 716
>gi|238634235|gb|ACR52112.1| pol protein [Human immunodeficiency virus 1]
Length = 383
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 83 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 111
>gi|312219658|emb|CBX99601.1| hypothetical protein [Leptosphaeria maculans]
Length = 325
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 25 GWGVLLRYKGKEKIISGGEKETTNNRMELM-----AAIKALTALKYPCKVLLYTDSSYVH 79
G GV+ + + + + T + M+ AA++ L
Sbjct: 101 GAGVVWMEERVWREKAYPLGKDTGDSMDAEVFGLAAALRLAQDTADEKPWLRVVRIFSDG 160
Query: 80 KGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKGHAGNQENEKVD 138
+ + ++ + ++ V+L W+KGHAG++ N + D
Sbjct: 161 RRVLEGLRDGYIRSLGPAVSSPWALTQVYNVTRALVRRGITVELVWVKGHAGSEGNYRAD 220
Query: 139 RIARNA 144
ARN
Sbjct: 221 LAARNG 226
>gi|51489|emb|CAA34659.1| unnamed protein product [Mus musculus]
Length = 461
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 22/157 (14%)
Query: 2 DSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
L+ + YTDG+ G G + K++S E + +E +
Sbjct: 17 RRNPLKNGIVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLE 65
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
+ + + +DS YV + + G + + S + V
Sbjct: 66 VLKIFLEPLNIVSDSCYVVNAVN----LLEVAGVIKPSSRVANIFQQIQLVL-LSRRFPV 120
Query: 121 DLYWIKGHAGNQ-----ENEKVDRIARNAAVSFKNKI 152
+ ++ H+G N+ D+ + A + + +
Sbjct: 121 YITHVRAHSGLPGPMALGNDLADKATKVVAAALSSPV 157
>gi|256011534|gb|ACU55623.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++ +
Sbjct: 666 KVYLAWVPAHKGIGGNEQVDKLVSSGIRK 694
>gi|238635587|gb|ACR52818.1| pol protein [Human immunodeficiency virus 1]
gi|238635591|gb|ACR52820.1| pol protein [Human immunodeficiency virus 1]
Length = 383
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 83 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 111
>gi|306478079|gb|ADM89414.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELHAIYLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + +V L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKERVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNGQVDKLVSTGIRK 558
>gi|224171315|ref|XP_002193721.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 907
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVL-LRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+TDG+ G G ++ + + K++ G + + ++ + A
Sbjct: 460 TVFTDGS-----GKTGKAIVTWKDGSEWKVLKGHQ--DGSAQVVELRAAVMAFERFSQEP 512
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + +K + ++ + + H + ++ H
Sbjct: 513 FNLVTDSAYVADIAQRLG----HSVFKEVSNPALFHLLKTLWCAIQARVHPFYVLNVRSH 568
Query: 129 AGN-----QENEKVDRIARNA 144
+ N + D++A A
Sbjct: 569 TNLPGFVAEGNARADKLANPA 589
>gi|154686443|ref|YP_001421604.1| hypothetical protein RBAM_020110 [Bacillus amyloliquefaciens FZB42]
gi|154352294|gb|ABS74373.1| YpeP [Bacillus amyloliquefaciens FZB42]
Length = 223
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 23/147 (15%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--------KETTNNRMELMAAI 57
++ Y DG G G G+++ Y K + A
Sbjct: 72 PDDITVYFDGGFDKTSGRAGLGIVVYYSLGGKRHRIRKNKSLTLQTNNEAEYAALYEALK 131
Query: 58 KALTALKYPCKVLLYTDSSYVHKGFSQWIKKW-QQNGWKTSDKKTVKNIDLWMKFVEASA 116
+ + + DS V + + + + EA
Sbjct: 132 EVQELGASRNSITIRGDSLVVLHQLDGSWPCYDETQNEWLDKIEALLESLKLTPTYEA-- 189
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARN 143
+EN++ D +AR
Sbjct: 190 ------------VNRKENQEADDLARK 204
>gi|87137461|gb|ABD27946.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +G++KI S ++TTN + EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTNRGRQKIHS--LEDTTNQKAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SDIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|290972621|ref|XP_002669050.1| predicted protein [Naegleria gruberi]
gi|284082591|gb|EFC36306.1| predicted protein [Naegleria gruberi]
Length = 813
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 22/154 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIK 58
+ R +TDG+ G G G+ + G E +NN E+ A I
Sbjct: 471 ETNRCFIIHTDGSKL--AGKTGMGINIYESGGRLSPCKSLSLRINNEYSNNVAEIGAIIT 528
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A+ L ++TDS S K ++
Sbjct: 529 AMKLLPNGTTARIHTDSKVAIDVLS------------RKYKGNFLPFKTEFFNIQKEKNI 576
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V + +KGH ++EN VDR+A++ ++KI
Sbjct: 577 SVYIIKVKGHE-DKENIIVDRLAKDGTE--RDKI 607
>gi|302875739|ref|YP_003844372.1| Ribonuclease H1-like [Clostridium cellulovorans 743B]
gi|307689170|ref|ZP_07631616.1| Ribonuclease H1-like protein [Clostridium cellulovorans 743B]
gi|302578596|gb|ADL52608.1| Ribonuclease H1-like [Clostridium cellulovorans 743B]
Length = 315
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 14/144 (9%)
Query: 9 VHAYTDGACSGNPGPGGWG------VLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+H Y DG+ +G +G +++Y + I +K EL A++A
Sbjct: 75 LHIYVDGSYNGTEEIYSYGLVAVKNGVIQYIESDGIKDPSKKNIRQIAGELRGAVRAAEY 134
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
++ + Y ++ + + N+ +
Sbjct: 135 AIDKGEIKVVIFHDYEGISHHATGFWERKESSSIEYYEKMNNL--------MKQGLDIIF 186
Query: 123 YWIKGHAGNQENEKVDRIARNAAV 146
+ H G+ NE VD + A
Sbjct: 187 VKVDSHTGDLFNEIVDEKCKEKAR 210
>gi|238634215|gb|ACR52102.1| pol protein [Human immunodeficiency virus 1]
gi|238634217|gb|ACR52103.1| pol protein [Human immunodeficiency virus 1]
gi|238634219|gb|ACR52104.1| pol protein [Human immunodeficiency virus 1]
gi|238634221|gb|ACR52105.1| pol protein [Human immunodeficiency virus 1]
gi|238634223|gb|ACR52106.1| pol protein [Human immunodeficiency virus 1]
gi|238634225|gb|ACR52107.1| pol protein [Human immunodeficiency virus 1]
gi|238634227|gb|ACR52108.1| pol protein [Human immunodeficiency virus 1]
gi|238634229|gb|ACR52109.1| pol protein [Human immunodeficiency virus 1]
gi|238634231|gb|ACR52110.1| pol protein [Human immunodeficiency virus 1]
gi|238634233|gb|ACR52111.1| pol protein [Human immunodeficiency virus 1]
gi|238634237|gb|ACR52113.1| pol protein [Human immunodeficiency virus 1]
gi|238635583|gb|ACR52816.1| pol protein [Human immunodeficiency virus 1]
gi|238635585|gb|ACR52817.1| pol protein [Human immunodeficiency virus 1]
gi|238635589|gb|ACR52819.1| pol protein [Human immunodeficiency virus 1]
gi|238635593|gb|ACR52821.1| pol protein [Human immunodeficiency virus 1]
Length = 383
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 83 KVYLAWVPAHKGIGGNEQVDKLVSAGIRK 111
>gi|87137496|gb|ABD27963.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++ +
Sbjct: 84 KVYLTWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|290973577|ref|XP_002669524.1| predicted protein [Naegleria gruberi]
gi|284083073|gb|EFC36780.1| predicted protein [Naegleria gruberi]
Length = 813
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 22/154 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS-----GGEKETTNNRMELMAAIK 58
+ R +TDG+ G G G+ + G E +NN E+ A I
Sbjct: 471 ETNRCFIIHTDGSKL--AGKTGMGINIYESGGRLSPCKSLSLRINNEYSNNVAEIGAIIT 528
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A+ L ++TDS S K ++
Sbjct: 529 AMKLLPNGTTARIHTDSKVAIDVLS------------RKYKGNFLPFKTEFFNIQKEKNI 576
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKNKI 152
V + +KGH ++EN VDR+A++ ++KI
Sbjct: 577 SVYIIKVKGHE-DKENIIVDRLAKDGTE--RDKI 607
>gi|260533635|gb|ACX45044.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA S G G+ +R A T +
Sbjct: 596 YVDGAASRETKLGKAGY--------------------VTDRGRQKAITLTETTNQKAELH 635
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+Y + G + ++ + + + KV L W+ H
Sbjct: 636 AIYLALQDSGSEVNIVTDSQYALGILQAQPDKSESELVNQIIEKLIGKDKVYLSWVPAHK 695
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+V+++ +
Sbjct: 696 GIGGNEQVEKLVSSGIRK 713
>gi|256011650|gb|ACU55681.1| pol protein [Human immunodeficiency virus 1]
Length = 842
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ +R T +
Sbjct: 435 YVDGAANRETKLGKAGY--------------------VTDRGRQKVVSLQDTTNQKTELQ 474
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + G ++ ++ + + KV L W+ H
Sbjct: 475 AXHLALQDXGSEXNIVXXSXYALGXIQAZPDKSESEIVSQIIELLIKKEKVYLAWVPAHK 534
Query: 130 GNQENEKVDRIARNAAVS 147
G NE+VD++
Sbjct: 535 GIGGNEQVDKLVSTGIRK 552
>gi|255984816|gb|ACU46480.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 41 YVDGAANRETKJGKAGYVTNXGRQKVXLLNDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVXQIIEQLIKKEKVYLAWXPAHKGI 142
Query: 132 QENEKVDRIARNAAVS 147
NE+VD +
Sbjct: 143 GGNEQVDXLVSXGIRK 158
>gi|229084698|ref|ZP_04216965.1| hypothetical protein bcere0022_13320 [Bacillus cereus Rock3-44]
gi|228698654|gb|EEL51372.1| hypothetical protein bcere0022_13320 [Bacillus cereus Rock3-44]
Length = 221
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 4/141 (2%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTAL 63
+ +++ Y DG G G+ + YK +K+ + + A A
Sbjct: 71 EEPQDIRVYFDGGFDIETKEAGIGICVYYKKNQKMYRVRRNAYIDGIHDNNEAEYAALLY 130
Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
L V + Q G + + + ++ + K+
Sbjct: 131 GMNALEELRIKYESVTLHGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 190
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 191 PV----TRKQNKEAHQLATQA 207
>gi|297795913|ref|XP_002865841.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
gi|297311676|gb|EFH42100.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 36/139 (25%), Gaps = 18/139 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTA--LKY 65
DGA GNPG G +L + G TNN E I L K
Sbjct: 193 IIEFDGASKGNPGLSGAAAVLKTEDGSLICKMRQGLGIATNNAAEYHGLILGLKHAIEKG 252
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
K+ + TDS V K + K + + +
Sbjct: 253 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDQCLSFEI------------- 299
Query: 126 KGHAGNQENEKVDRIARNA 144
N D A A
Sbjct: 300 -SQVLRNLNSDADEQANMA 317
>gi|258450521|gb|ACV72190.1| ribonuclease H [uncultured organism]
Length = 161
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIK 58
++DGA NPGP GV+L+ E + S E +TTNN E A ++
Sbjct: 31 ILWSDGASRNNPGPAAIGVVLKRPTGELLASDAEYIGKTTNNVAEYRALLR 81
>gi|297469872|ref|XP_001788686.2| PREDICTED: Pro-Pol-like [Bos taurus]
Length = 853
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ + G L+ + + + A+ +
Sbjct: 444 LTVFTDGSSN------GIASLIIQDNTTTWHTNYKSAQEVELFAVFQALLQI-----SAP 492
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
LY+DS Y+ + + ++ + ++I + S +K I+ H
Sbjct: 493 FNLYSDSQYIIRALNTIETVPFIGTLNSTIQTLFRDIQ----HLICSRVNKCYFGHIRAH 548
Query: 129 AGNQ-----ENEKVDR 139
+G N D
Sbjct: 549 SGLPGPLARGNALADE 564
>gi|297467302|ref|XP_002704998.1| PREDICTED: Pro-Pol-like, partial [Bos taurus]
Length = 447
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ + G L+ + + + A+ +
Sbjct: 38 LTVFTDGSSN------GIASLIIQDNTTTWHTNYKSAQEVELFAVFQALLQI-----SAP 86
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
LY+DS Y+ + + ++ + ++I + S +K I+ H
Sbjct: 87 FNLYSDSQYIIRALNTIETVPFIGTLNSTIQTLFRDIQ----HLICSRVNKCYFGHIRAH 142
Query: 129 AGNQ-----ENEKVDR 139
+G N D
Sbjct: 143 SGLPGPLARGNALADE 158
>gi|297492890|ref|XP_002699989.1| PREDICTED: Pro-Pol-like [Bos taurus]
gi|296470910|gb|DAA13025.1| Pro-Pol-like [Bos taurus]
Length = 789
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ + G L+ + + + A+ +
Sbjct: 380 LTVFTDGSSN------GIASLIIQDNTTTWHTNYKSAQEVELFAVFQALLQI-----SAP 428
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
LY+DS Y+ + + ++ + ++I + S +K I+ H
Sbjct: 429 FNLYSDSQYIIRALNTIETVPFIGTLNSTIQTLFRDIQ----HLICSRVNKCYFGHIRAH 484
Query: 129 AGNQ-----ENEKVDR 139
+G N D
Sbjct: 485 SGLPGPLARGNALADE 500
>gi|228920410|ref|ZP_04083755.1| hypothetical protein bthur0011_14240 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839040|gb|EEM84336.1| hypothetical protein bthur0011_14240 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 219
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+H Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEIHVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ L+ + Q + + + + +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|198438591|gb|ACA81610.2| pol polyprotein [Caprine arthritis encephalitis virus Roccaverano]
Length = 977
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
YTDG G G + K + G + R A ++ +
Sbjct: 563 YTDGGKKN--KVGSLGFISSTGVKFRKHEEGTNQQLELRAIEEACRHGPDSMN------I 614
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y ++ + ++ + + + + ++W+ GH G
Sbjct: 615 VTDSRYAYEFLLRDWEEESIINPIQARIMALVHRKTA-----------LGVHWVPGHKGI 663
Query: 132 QENEKVDR 139
+NE++D+
Sbjct: 664 PQNEEIDK 671
>gi|116309689|emb|CAH66737.1| H0404F02.13 [Oryza sativa Indica Group]
Length = 749
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 25/157 (15%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 338 MLEEKMEYWTMHFDGSKRLRGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 395
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 396 GLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLELT- 452
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR-----NAAVSF 148
H NE DR+A AA S+
Sbjct: 453 -----------HVLRHNNEVADRLANFGSKREAAPSY 478
>gi|158935173|emb|CAM90425.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|49574337|gb|AAT66838.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYITDRGRQKVVPLTDTTNQKTELQAINLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L W+ H G
Sbjct: 496 VTDSQYALGIIQAQPDQSE-------------SEVVSQLLEQLLKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
N +VD++
Sbjct: 543 GGNTQVDKLVSTGIRK 558
>gi|3327392|gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 34/137 (24%), Gaps = 13/137 (9%)
Query: 9 VHAYTDGACSGNPG-PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
V TDGA G+ G G +L + N A + L Y
Sbjct: 810 VKLTTDGASRGHQGLAAASGAIL------NLQGEWLGGFALNIGSCDAPLAELWGAYYGL 863
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ V + + + + L F +V
Sbjct: 864 LIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRV------S 917
Query: 128 HAGNQENEKVDRIARNA 144
H + N D +A A
Sbjct: 918 HVYREANRLADGLANYA 934
>gi|301603917|ref|XP_002931619.1| PREDICTED: hypothetical protein LOC100497926 [Xenopus (Silurana)
tropicalis]
Length = 598
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 14/143 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++H YTD A G G+G + +G + + + +
Sbjct: 444 DLHLYTDAA-----GSKGFGAIFG----TSWCTGEWPDEWHAKGLTRNLVFLELFPVLVS 494
Query: 68 KVLLYTDSSYVHKG-FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
VL S + Q T+D V + + + +
Sbjct: 495 VVLWGDGFRDKAITFHSDNMGVVQCVNSLTADSAPVIGLLRQLVLLCLERNILFRARHVP 554
Query: 127 GHAGNQENEKVDRIARNAAVSFK 149
G +NE D ++R F+
Sbjct: 555 G----VQNEIADALSRFQMERFR 573
>gi|87137459|gb|ABD27945.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 22 GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKG 81
G G+ + +G++KI S ++TTN + EL A + AL +V + TDS YV
Sbjct: 7 GKAGY---VTNRGRQKIHS--LEDTTNQKAELQAVLMALQDSGQ--EVNVVTDSQYVLGI 59
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIA 141
+ + + E + K+ L W+ H G NE+VD++
Sbjct: 60 LQSHPDHSE-------------SDIVNQIIEELIKKEKIYLSWVPAHRGIGGNEQVDKLV 106
Query: 142 RNAAVS 147
+
Sbjct: 107 SSGIRK 112
>gi|170042117|ref|XP_001848784.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865652|gb|EDS29035.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 256
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 30/133 (22%), Gaps = 36/133 (27%)
Query: 14 DGACSGNPGPG---GWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ GN G GV +SG AI+ V
Sbjct: 16 DGSWEGNGTAAACAGLGVYFGEGHTLNAVSGRATNNCREFQAAALAIRLAKQQGI--TVK 73
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
D + + + K+ + G
Sbjct: 74 NQVDVEELDRELADKSI-------------------------------KIKWSHVDVDCG 102
Query: 131 NQENEKVDRIARN 143
NE+ D +AR
Sbjct: 103 ILGNERADALARE 115
>gi|206974780|ref|ZP_03235695.1| conserved domain protein [Bacillus cereus H3081.97]
gi|217959176|ref|YP_002337724.1| hypothetical protein BCAH187_A1768 [Bacillus cereus AH187]
gi|229138392|ref|ZP_04266983.1| hypothetical protein bcere0013_15110 [Bacillus cereus BDRD-ST26]
gi|206746799|gb|EDZ58191.1| conserved domain protein [Bacillus cereus H3081.97]
gi|217063253|gb|ACJ77503.1| conserved domain protein [Bacillus cereus AH187]
gi|228645063|gb|EEL01304.1| hypothetical protein bcere0013_15110 [Bacillus cereus BDRD-ST26]
Length = 219
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNTKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|158935171|emb|CAM90424.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|158935169|emb|CAM90423.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|87137488|gb|ABD27959.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|328710861|ref|XP_003244383.1| PREDICTED: hypothetical protein LOC100570071 [Acyrthosiphon pisum]
Length = 90
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 124 WIKGHAGNQENEKVDRIARNA 144
WI GH + NE D+ A+ A
Sbjct: 2 WIPGHCNIEGNELADKAAKQA 22
>gi|291237364|ref|XP_002738605.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 556
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
E +TD + + G+G + + + L +
Sbjct: 387 EFELFTDASAT-----LGYGAFYKGHWFTNTWPTFITNDPLYSIACKELLPILLSSLIWG 441
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + S + + S + + + F AS V + I G
Sbjct: 442 HLWFGLRIRFHCDNISVVQIWKKGS----SSCPRIMQLVRLLFFTAASNNFHVMISHISG 497
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
N+ D ++R + F+
Sbjct: 498 FN----NDIADSLSRQQILRFQR 516
>gi|291237360|ref|XP_002738603.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 539
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
E +TD + + G+G + + + L +
Sbjct: 370 EFELFTDASAT-----LGYGAFYKGHWFANTWPTFITNDPLYSIAWKELLPILLSSLIWG 424
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + S + + S + + + F AS V + I G
Sbjct: 425 HLWYGLRIRFHCDNISVVQIWKKGS----SSCPRIMQLVRLLFFTAASNNFHVMISHISG 480
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
N+ D ++R + F+
Sbjct: 481 FN----NDIADSLSRQQILRFQR 499
>gi|153838052|ref|ZP_01990719.1| ribonuclease H [Vibrio parahaemolyticus AQ3810]
gi|262394670|ref|YP_003286524.1| ribonuclease HI [Vibrio sp. Ex25]
gi|149748586|gb|EDM59445.1| ribonuclease H [Vibrio parahaemolyticus AQ3810]
gi|262338264|gb|ACY52059.1| ribonuclease HI [Vibrio sp. Ex25]
Length = 38
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145
E + V W+K H G+ NE+V +A +A
Sbjct: 1 MDELNESMNVSWEWVKAHNGHPLNERVHMLAYSAI 35
>gi|32488503|emb|CAE03255.1| OSJNBa0011J08.10 [Oryza sativa Japonica Group]
Length = 788
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS--GGEKETTNNRMELMAAIK 58
M + + + DG+ G GV+L E++ ++N E A +
Sbjct: 418 MPEEKMEYWTMHFDGSKRLTGT--GAGVILISPTGERLSYVLWIYFSASHNVAEYEALLH 475
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L ++++ DS V + + T+ ++ V+ ++ +E +
Sbjct: 476 GLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLELT- 532
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 533 -----------HVLRHNNEVADRLAN 547
>gi|229016983|ref|ZP_04173903.1| hypothetical protein bcere0030_15480 [Bacillus cereus AH1273]
gi|229023164|ref|ZP_04179675.1| hypothetical protein bcere0029_15060 [Bacillus cereus AH1272]
gi|228738089|gb|EEL88574.1| hypothetical protein bcere0029_15060 [Bacillus cereus AH1272]
gi|228744254|gb|EEL94336.1| hypothetical protein bcere0030_15480 [Bacillus cereus AH1273]
Length = 219
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E A +
Sbjct: 69 EDPQEIQVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYAALLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K V
Sbjct: 129 GMNTLEELGIKYEPVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|228957976|ref|ZP_04119713.1| hypothetical protein bthur0005_14870 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228801683|gb|EEM48563.1| hypothetical protein bthur0005_14870 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 219
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLICE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|87137486|gb|ABD27958.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|85700595|gb|ABC74704.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 681 RVYLSWVPAHKGIGGNEQVDKLVSSGIRK 709
>gi|324325716|gb|ADY20976.1| hypothetical protein YBT020_08650 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 219
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-----SGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + YK K + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNKNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|255984698|gb|ACU46421.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 130 KVYLAWVPAHKGIGGNEQVDKLVSTGIRK 158
>gi|255984576|gb|ACU46360.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + + + + A++ +V +
Sbjct: 41 YVDGAANRETKLGKXGYVTDRGRQXVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNI 95
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 96 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGI 142
Query: 132 QENEKVDRIARNAAV 146
NE+ D++
Sbjct: 143 GGNEQXDKLVSTGIR 157
>gi|255984034|gb|ACU46089.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 629 KVYLAWVPAHKGIGGNEQVDKLVSTGIRK 657
>gi|158935167|emb|CAM90422.1| pol protein [Simian immunodeficiency virus]
Length = 293
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
+ KV L W+ H G NE+VD++ +
Sbjct: 78 HMIKKDKVYLSWVPAHRGIGGNEQVDKLVSSGIRKI 113
>gi|77554831|gb|ABA97627.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2010
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
K++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1431 KNMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1488
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1489 IAISLGIKRLIVRGDSQLVVNQVMKEWSCI----------DDNMMAYRQEVRKLEDKFEG 1538
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1539 LELSHVLRHN----NEAADRLAN 1557
>gi|218199235|gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indica Group]
Length = 561
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALT 61
L V TDGA S N GGWG +++ + + +G +
Sbjct: 399 RRPPLNFVKINTDGAYSSNMKQGGWGFVIKDQTGAVLQAGAGPAAYLQDAFHAEVVACAA 458
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
A+K + + S + S ++ Q+ +++ + V
Sbjct: 459 AIKTASERGM---SRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVS 515
Query: 122 LYWIKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 516 Y------SPRSCNKVAHELA 529
>gi|170660045|gb|ACB28471.1| polyprotein [Ananas comosus]
Length = 546
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ TDG GWG +L+ + + + EK + K +
Sbjct: 160 IIIETDGCDL------GWGAVLKARSNKYSDTKEEKLCGYASGKYRERGKISSIDAELLA 213
Query: 69 VLLYTD----SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V+ D + + + + + + W+ F + + +
Sbjct: 214 VIYALDAFKLNVINKQEITIRTDCEAITKFSHKKDEKASSRRRWINFQDRISISHIKFEH 273
Query: 125 IKGHAGNQENEKVDRIAR 142
I+G ++N D+++R
Sbjct: 274 IRG----KDNFFPDQLSR 287
>gi|170660043|gb|ACB28470.1| polyprotein [Ananas comosus]
Length = 551
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ TDG GWG +L+ + + + EK + K +
Sbjct: 160 IIIETDGCDL------GWGAVLKARSNKYSDTKEEKLCGYASGKYRERGKISSIDAELLA 213
Query: 69 VLLYTD----SSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
V+ D + + + + + + W+ F + + +
Sbjct: 214 VIYALDAFKLNVINKQEITIRTDCEAITKFSHKKDEKASSRRRWINFQDRISISHIKFEH 273
Query: 125 IKGHAGNQENEKVDRIAR 142
I+G ++N D+++R
Sbjct: 274 IRG----KDNFFPDQLSR 287
>gi|21913258|gb|AAM81188.1| pol protein [Homo sapiens]
Length = 863
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V +TDGA GG G + + +++ + ++
Sbjct: 455 VTVFTDGA------KGGTGAAILNNQRYFVLTACPSPQHAELAIIATVLRRE-----SAS 503
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + +DS+YV + +V + + + +H + + I+ H
Sbjct: 504 MNILSDSAYVVNAVQMLATQCLIL-----KSSSVYSYLSENQGLLNQREHAIYIGHIRAH 558
Query: 129 AGNQ-----ENEKVDR-----IARNAAVSFKN 150
+ N D +A A K
Sbjct: 559 SNLPGPLTRGNMMADHYSRFLLACTALEQAKE 590
>gi|170097267|ref|XP_001879853.1| predicted protein [Laccaria bicolor S238N-H82]
gi|170097271|ref|XP_001879855.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645256|gb|EDR09504.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645258|gb|EDR09506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 120
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARNAAV 146
K L WI H + NE+ D A+ AA
Sbjct: 14 FKFVLKWIAAHKDVKGNERADEEAKKAAQ 42
>gi|212550486|ref|YP_002308803.1| ribonuclease H [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212548724|dbj|BAG83392.1| ribonuclease H [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 198
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
D ACSGNPG + + +E SG +E TNN E +A + L LK +
Sbjct: 71 VDAACSGNPGNMEYRGVYTKTKEEVFHSGPFQEGTNNIGEFLAIVHGLIWLKQQKFSMPI 130
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
S + + Q K + ++K I+ K+++ ++ L W
Sbjct: 131 YSDSKIAIIWVQNKKCRTKLELCKNNKPIFDLIERAEKWLKNNSYITRILKW 182
>gi|126304177|ref|XP_001382010.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
Length = 966
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G ++ + I + + +
Sbjct: 589 TIFVDGS------KTGLAAIVMHDCPHTIHTPYQSAQLVELYAALTV----FISLPESPF 638
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LY+DS YV + + + + T + + A + + I+ H+
Sbjct: 639 NLYSDSRYVV----KSLLRLEATPVIQPTTATFFLFTKIQQAIRARSPFFIG--HIRAHS 692
Query: 130 GNQE-----NEKVDRIARNAAVS 147
G N+ D+ R AA++
Sbjct: 693 GLPGPLALGNDLADQYTRLAALA 715
>gi|77555386|gb|ABA98182.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1940
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
K + + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1361 KKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1418
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + T+ ++ V+ ++ +E
Sbjct: 1419 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLEL----- 1471
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1472 -------SHVLRHNNEAADRLAN 1487
>gi|52143759|ref|YP_083067.1| hypothetical protein BCZK1472 [Bacillus cereus E33L]
gi|51977228|gb|AAU18778.1| possible ribonuclease H [Bacillus cereus E33L]
Length = 219
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNAKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|229172340|ref|ZP_04299900.1| hypothetical protein bcere0006_14510 [Bacillus cereus MM3]
gi|228611136|gb|EEK68398.1| hypothetical protein bcere0006_14510 [Bacillus cereus MM3]
Length = 219
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNTKYRIRRNAYIEGIYDNNEAEYASLLH 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ L+ + Q + + + + +
Sbjct: 129 GMNILEEFGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|222095318|ref|YP_002529378.1| hypothetical protein BCQ_1658 [Bacillus cereus Q1]
gi|221239376|gb|ACM12086.1| possible ribonuclease H [Bacillus cereus Q1]
Length = 219
Score = 39.1 bits (89), Expect = 0.18, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNTKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|256010901|gb|ACU55307.1| pol protein [Human immunodeficiency virus 1]
Length = 962
Score = 39.1 bits (89), Expect = 0.18, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV + W+ H G NE+VD++
Sbjct: 644 KVYMAWVPAHKGIGGNEQVDKLVSXGIRK 672
>gi|321453396|gb|EFX64636.1| hypothetical protein DAPPUDRAFT_333996 [Daphnia pulex]
Length = 292
Score = 39.1 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 121 DLYWIKGHAGNQENEKVDRIA 141
L WI H G + NE+ DR+A
Sbjct: 242 RLTWIPSHTGIEGNERTDRLA 262
>gi|321448045|gb|EFX61292.1| hypothetical protein DAPPUDRAFT_122319 [Daphnia pulex]
Length = 675
Score = 39.1 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 121 DLYWIKGHAGNQENEKVDRIA 141
L WI H G + NE+ DR+A
Sbjct: 527 RLTWIPSHTGIEGNERTDRLA 547
>gi|289187252|gb|ADC92205.1| pol protein [Human immunodeficiency virus 1]
Length = 550
Score = 39.1 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQ-----DSGAEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + K+ L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGI 542
Query: 132 QENEKVDR 139
NE++D+
Sbjct: 543 GGNEQIDK 550
>gi|87162935|gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
Length = 409
Score = 39.1 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 12/135 (8%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
DG+ G+P G GV+ R + + +E +
Sbjct: 254 KINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAE-------YSACMFAI 306
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
+ + + + +I + + + H
Sbjct: 307 EKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCT-----HV 361
Query: 130 GNQENEKVDRIARNA 144
+ N D +A+N
Sbjct: 362 NREGNLVADALAKNG 376
>gi|229195907|ref|ZP_04322661.1| hypothetical protein bcere0001_14690 [Bacillus cereus m1293]
gi|228587549|gb|EEK45613.1| hypothetical protein bcere0001_14690 [Bacillus cereus m1293]
Length = 219
Score = 39.1 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGIGICVYYKKGNTKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|306478263|gb|ADM89506.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ I + A++ +V +
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQ-----DSGPEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + + + KV L WI H
Sbjct: 496 VTDSQYALGIIQAQPDRSE-------------SEIVSQIIEQLIKKEKVYLTWIPAHKEL 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VDR+
Sbjct: 543 GGNEQVDRLVSAGIRK 558
>gi|294992470|gb|ACU55690.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
KV L W+ H G NE+VD++
Sbjct: 685 KVYLAWVPAHKGIGGNEQVDKLVSAGIR 712
>gi|261334332|emb|CBH17326.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 597
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
++ L ++ GH G + NE D +A+ AA
Sbjct: 70 RIRLQFVFGHCGVKRNEVCDDMAKKAAD 97
>gi|256010781|gb|ACU55247.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
KV L W+ H G NE+VD++
Sbjct: 685 KVYLAWVPAHKGIGGNEQVDKLVSAGIR 712
>gi|156052327|ref|XP_001592090.1| hypothetical protein SS1G_06329 [Sclerotinia sclerotiorum 1980]
gi|154704109|gb|EDO03848.1| hypothetical protein SS1G_06329 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 118
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+++L WI H G NE DR A+ + ++
Sbjct: 79 EIELRWIPAHIGLCGNEAADRAAKEDVNAARD 110
>gi|110288733|gb|AAP52499.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
K + + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1416 KKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1473
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + + ++ V+ ++ +E
Sbjct: 1474 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMKAYRQEVRKLEDKFDGLEL----- 1526
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H +NE DR+A
Sbjct: 1527 -------SHVLRHDNEAADRLAN 1542
>gi|28822672|gb|AAO50447.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 591 YVDGAANRETKIGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQ-----DSESEVNI 645
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + ++ +K + L W+ H G
Sbjct: 646 VTDSQYALGIIQAQPDRSESELVNQIIEQLIKKERAY-------------LSWVPAHKGI 692
Query: 132 QENEKVDRIARNAAVS 147
+E+VD++ +
Sbjct: 693 GGDEQVDKLVSSGIRK 708
>gi|22128689|gb|AAM92802.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
K + + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1438 KKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1495
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + + ++ V+ ++ +E
Sbjct: 1496 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMKAYRQEVRKLEDKFDGLEL----- 1548
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H +NE DR+A
Sbjct: 1549 -------SHVLRHDNEAADRLAN 1564
>gi|218194582|gb|EEC77009.1| hypothetical protein OsI_15342 [Oryza sativa Indica Group]
Length = 815
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 13/135 (9%)
Query: 12 YTDGACSGNPGPGGWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y D + G G G+ + +I + + + M A+ + + ++
Sbjct: 645 YVDASWKE--GKTGIGIFIHNPENHNTIVIKATSSMSGSPLLAEMNALMLAIQICHQLQI 702
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
S V + + Q +D + + + WI
Sbjct: 703 -----QSPVFLSDNIMVVNAIQKEDYMTDPGHWSLRPALSRIHNILQGRNIKIQWIP--- 754
Query: 130 GNQENEKVDRIARNA 144
+ N+ D +A++A
Sbjct: 755 -REMNKMADNLAKSA 768
>gi|297464771|ref|XP_002703442.1| PREDICTED: Pro-Pol-like [Bos taurus]
Length = 1043
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 20/136 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ + G L+ + + + A+ +
Sbjct: 634 LTVFTDGSSN------GIASLIIQDNTTTWHTNYKSAQEVELFAVFQALLQI-----SAP 682
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
LY+DS Y+ + + ++ ++I + S +K I+ H
Sbjct: 683 FNLYSDSQYIIRALNTIETVPFIGTLNSTILTLFRDIQ----HLICSRVNKCYFGHIRAH 738
Query: 129 AGNQ-----ENEKVDR 139
+G N D
Sbjct: 739 SGLPGPLAQGNALADE 754
>gi|288187604|gb|ADC42295.1| pol protein [Human immunodeficiency virus 1]
Length = 649
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQ-----DSGVEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLTWVPAHKGI 641
Query: 132 QENEKVDR 139
NE++D+
Sbjct: 642 GGNEQIDK 649
>gi|218232188|ref|YP_002366382.1| hypothetical protein BCB4264_A1663 [Bacillus cereus B4264]
gi|218160145|gb|ACK60137.1| conserved domain protein [Bacillus cereus B4264]
Length = 219
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEIIVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLICE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|126333978|ref|XP_001369038.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
Length = 890
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 20/143 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G ++ + + + + +
Sbjct: 666 TIFVDGS------KTGLAAIVMHDYPHTVHTPYQSAQLVELYAALTV----FISLPESPF 715
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LY+DS YV Q + + + T + + + H + I+ H+
Sbjct: 716 NLYSDSRYVV----QSLLRLEATPVIQPTTATFFLFTKIQQAIR-ARSHPFFIGHIRAHS 770
Query: 130 GNQ-----ENEKVDRIARNAAVS 147
G N+ D+ R AA++
Sbjct: 771 GLPGPLALGNDLADQYTRLAALA 793
>gi|256011408|gb|ACU55560.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 18/129 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + ++ A+
Sbjct: 595 YVDGAANRETKLGKAGYVTNRGRQKVVPLTDTTNQKTELQAILLAL-------------- 640
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
KV L W+ H G
Sbjct: 641 ----QDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVYLAWVPAHKGI 696
Query: 132 QENEKVDRI 140
NE+VD++
Sbjct: 697 GGNEQVDKL 705
>gi|224169933|ref|XP_002199858.1| PREDICTED: similar to polymerase [Taeniopygia guttata]
Length = 1075
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 14/143 (9%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + + +TDG+ G V+ K K + + A
Sbjct: 655 QEPVEGMTVFTDGS-----GKTHKSVVTWQNPKTGEWESDIKIVQGSPQIVELAAVVRVF 709
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ + L TDS+YV K+ + + K +D + + + L M+ + + +HK +
Sbjct: 710 QLFQEPLNLITDSAYVANVV----KRLEGSLLKPTDNEILYSYLLCMRTILENREHKYFV 765
Query: 123 YWIKGHAGN-----QENEKVDRI 140
I+ H+ + N DR+
Sbjct: 766 AHIRAHSSLPGFLAEGNAHADRL 788
>gi|224120682|ref|XP_002318391.1| predicted protein [Populus trichocarpa]
gi|222859064|gb|EEE96611.1| predicted protein [Populus trichocarpa]
Length = 315
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 13 TDGACSGNPGPGGWGVLLRYKG-KEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DG+ G PGP G G +LR + S +N EL +KA+ C +
Sbjct: 195 VDGSSLGKPGPSGIGGVLRNHYGHLLVFSIPVGILDSNLAELRDIVKAIELSASNCLLH- 253
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ H +K + + + + H
Sbjct: 254 -----HKHLIIESDFVNVISWMHNPHNKSWMHHKLFSSINRLNAYFGSITYT----HVFR 304
Query: 132 QENEKVDRIAR 142
+ N + +A+
Sbjct: 305 ESNYMANYMAK 315
>gi|241708633|ref|XP_002403286.1| hypothetical protein IscW_ISCW010496 [Ixodes scapularis]
gi|215505048|gb|EEC14542.1| hypothetical protein IscW_ISCW010496 [Ixodes scapularis]
Length = 252
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 118 HKVDLYWIKGHAGNQENEKVDRIARN 143
+ WI GHAG + NE+ +AR
Sbjct: 168 RDTKILWIPGHAGIKGNEEAHDLARA 193
>gi|126277851|ref|XP_001378703.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
Length = 1023
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G ++ + + + + +
Sbjct: 596 TIFVDGS------KTGLAAIVMHDYPHTVHTPYQSAQLVELYAALTV----FISLPESPF 645
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LY+DS YV Q + + + T + + + H + I H+
Sbjct: 646 NLYSDSRYVV----QSLLRLEATPVIQPTTATFSLFTKIQQAIR-ARSHPFFIGHIPAHS 700
Query: 130 GNQ-----ENEKVDRIARNAAVS 147
G N+ D+ R AA++
Sbjct: 701 GLPGPLALGNDLADQYTRLAALA 723
>gi|38347265|emb|CAE05312.2| OSJNBa0056L23.10 [Oryza sativa Japonica Group]
Length = 867
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+ + + DG+ + G V+L +E++ + +N E + L
Sbjct: 310 EKMEHWTMHFDGSKRLSGTRAG--VVLISPTEERLSYVLWIHFSTSHNVAEYEVLLHGLR 367
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+ ++++ DS V + + T+ ++ V+ ++ +E
Sbjct: 368 IVISLGIKRLIVRGDSQLVVNQVMKEWSCI--DDNMTAYRQEVRKLEDKFDGLEL----- 420
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 421 -------SHVLRHNNEAADRLAN 436
>gi|1780973|emb|CAA71417.1| pol protein [Human endogenous retrovirus K]
Length = 740
Score = 39.1 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G + K + R EL+A I L
Sbjct: 462 NALTVFTDGSSN---GKAAY-------TGPKERVIKTPYQSAQRAELVAVITVLQDFDQ- 510
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ + +DS+YV + + + + ++ + +I+
Sbjct: 511 -PINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY----ITYIR 565
Query: 127 GHAGNQE-----NEKVDRIARNAAVSFKN 150
H NE+ D + +A + +
Sbjct: 566 AHTNLPGPLTKANEQADLLVSSALIKAQE 594
>gi|306478341|gb|ADM89545.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.1 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELXAIHLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y K + + V L W+ H G
Sbjct: 496 VTDSXYALGXIXXQPDKSESELVSK-------------IIEQLIKXEXVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAV 146
NE VD++
Sbjct: 543 GGNEXVDKLVSTGIR 557
>gi|224045037|ref|XP_002196868.1| PREDICTED: similar to Gag-Pro-Pol-Env protein [Taeniopygia guttata]
Length = 1762
Score = 39.1 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 14/138 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V++ + + + + A K+
Sbjct: 1111 LTVFTDGS-----GKSHKSVIMWKDLESQKWESDIQIVEGSPQIAELAAVVRAFKKFQQP 1165
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
L TDS+YV + + + + + E S + ++ H
Sbjct: 1166 FNLVTDSAYVAGIAERAEHAMLKEIQNRKLFGLLTELIWLISHREQSFH----IMHVRVH 1221
Query: 129 AGN-----QENEKVDRIA 141
+ N D +A
Sbjct: 1222 TDLPGAIAEGNRMADHLA 1239
>gi|38346888|emb|CAE03913.2| OSJNBb0015G09.7 [Oryza sativa Japonica Group]
Length = 1991
Score = 39.1 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1412 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1469
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
+++ DS V +
Sbjct: 1470 IAISLGIKHLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1519
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1520 LELSHVLRHN----NEAADRLAN 1538
>gi|49574365|gb|AAT66852.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGSEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+V ++
Sbjct: 543 GGNEQVGKLVSTGIRK 558
>gi|256011390|gb|ACU55551.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA S G ++ + + A++ +V +
Sbjct: 594 YVDGAASRETKLGKAXXXXXXGXQKVVSLTDXTNQKTELHAIQLALQ-----DSGSEVNI 648
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y + + + + E + KV L W+ H G
Sbjct: 649 VTDSQYALGIIQAQPDRSE-------------SEXVNQIIEELIKKEKVYLSWVPAHKGI 695
Query: 132 QENEKVDRIARNAAV 146
NE+VD++
Sbjct: 696 GGNEQVDKLVSXGIR 710
>gi|51038246|gb|AAT94049.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1844
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+ + + DG+ + G GV+L E++ + +N E A +
Sbjct: 1365 EKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGPR 1422
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + T+ ++ V+ ++ +E
Sbjct: 1423 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLEL----- 1475
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1476 -------SHVLRHNNEAADRLAN 1491
>gi|228982754|ref|ZP_04143013.1| Ribonuclease HI [Bacillus thuringiensis Bt407]
gi|228776937|gb|EEM25245.1| Ribonuclease HI [Bacillus thuringiensis Bt407]
Length = 240
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 1/137 (0%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALTALKYPC 67
+H Y DG+ S +G++ GK + G + + L +K
Sbjct: 82 LHCYVDGSFSKEIENYSYGLICVEGGKTVVYVDNGVGSNKDAVTMQQIGGELLGTMKALL 141
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
V + + WK +K + KF + +V +
Sbjct: 142 VAKKKKPKKLVIFFDYEGVALHATGYWKRDNKFSETYYQWMQKFFAENPDIEVTFCKVDA 201
Query: 128 HAGNQENEKVDRIARNA 144
H G+ NE D A+ A
Sbjct: 202 HTGDDFNELADGFAKLA 218
>gi|328834433|gb|AEB52843.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
KV L W+ H G NE+VD++
Sbjct: 688 KVYLTWVPAHKGIGGNEQVDKLVSAGIR 715
>gi|324526829|gb|ADY48717.1| Ribonuclease H [Ascaris suum]
Length = 181
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 10 HAYTDGACSGN---PGPGGWGVLLRYKGKEKIISGGE-KETTNNRMELMAAIKALTALKY 65
+TDGACS N G GV + + TNNR EL A I AL ++
Sbjct: 104 VVFTDGACSSNGHHGAKAGIGVFWGDDHPDNVSEPLISGPPTNNRAELSAVITALRTVRL 163
Query: 66 PCKV 69
C +
Sbjct: 164 LCDL 167
>gi|322793462|gb|EFZ17010.1| hypothetical protein SINV_04634 [Solenopsis invicta]
Length = 59
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 99 KKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIAR 142
+ + ++ WI H G NE D +A+
Sbjct: 2 QNKYVLEIKKWYCKFKESNKEIIFVWIPSHRGISGNELADYLAK 45
>gi|77554616|gb|ABA97412.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1053
Score = 39.1 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 1 MDSKHLRE-VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKA 59
++ K + + Y+DG+ S G G VL G + + T N AI
Sbjct: 879 LEPKPVEQPWVMYSDGSWSHK-GVGAVAVLTLPGGVPIRYATRLQFDTTNNAAEYEAILL 937
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
V + + + + ++ ++ + ++ +
Sbjct: 938 GLKKAKALGVR-----RLLIRTNFKLVASHVDKSFEAKEEGMRRYLEAVRSMEKCFVGIT 992
Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145
V+ H +NE+ D +A++AA
Sbjct: 993 VE------HLPRGQNEEADALAKSAA 1012
>gi|294873429|ref|XP_002766623.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239867655|gb|EEQ99340.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 369
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 5/143 (3%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIKA 59
S + + DG G G G +L K I+ + R A +A
Sbjct: 214 SNLMPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPGRTNNEAEYEA 273
Query: 60 LTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
L L+ ++ +G S+ + +K+ ++ + + +
Sbjct: 274 LCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKDRAEQAIHGLMDR 333
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
+ + WI H N++ D +A
Sbjct: 334 MQVTWI--HTLRCNNKRADELAT 354
>gi|238734009|gb|ACR55264.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 596 YVDGAANRETKSGEAGYVTDRGRQKIVPLTYTTNQKTELQAIYLALQ-----DSGLEVNI 650
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ G
Sbjct: 651 VTDSQYA-------------LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPVPKGI 697
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 698 GGNEQVDKLVSAGIKK 713
>gi|87137494|gb|ABD27962.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 23 PGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGF 82
G + +G++KIIS E ++ + +V + TDS Y
Sbjct: 5 KMGKAGYVTNRGRQKIISLSETTNQKAELQAIQL----ALQDSESEVNIVTDSQYA---- 56
Query: 83 SQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIAR 142
G + + + E + K+ L W+ H G NE+VD++
Sbjct: 57 ---------LGIIQAQPDKSDSEIVNQIIEELIKKDKIYLSWVPAHKGIGGNEQVDKLVS 107
Query: 143 NAAVS 147
+
Sbjct: 108 SGIRK 112
>gi|255983978|gb|ACU46061.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGASNRETKLGKAGYVTNKGRQKVVTLTDTTNQKXELHAIXLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDXSESELVSQIIEQLIKKEKVYLAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+ D +
Sbjct: 642 GGNEQXDXLVSTGIRK 657
>gi|237826270|gb|ACR20931.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G + N++VD +
Sbjct: 60 EMIKKEAIYVAWVPAHKGIEGNQEVDHLVSQGIRQ 94
>gi|37221473|gb|AAQ89865.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAINLALQ-----DSGLEVNI 594
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV + W+ H G
Sbjct: 595 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYMAWVPAHKGI 641
Query: 132 QENEKVDRIARNAAVS 147
NE+V ++
Sbjct: 642 GGNEQVXKLVSAGIRK 657
>gi|319795054|ref|YP_004156694.1| ribonuclease h [Variovorax paradoxus EPS]
gi|315597517|gb|ADU38583.1| ribonuclease H [Variovorax paradoxus EPS]
Length = 147
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLL 30
H R + DG+ NPG G G ++
Sbjct: 2 HSRHWTVHCDGSAMPNPGRMGIGAVI 27
>gi|224092138|ref|XP_002189107.1| PREDICTED: similar to pol-like protein ENS-3 [Taeniopygia guttata]
Length = 895
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 3 SKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ R+ +TDG+C + +R A +
Sbjct: 553 PETERQYALFTDGSC--------------------------QIIGTSRKWKAALALDIAE 586
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ ++ LYTDS V W+ +W++ W+ K + ++W + V +
Sbjct: 587 QERWSRLYLYTDSWMVANAPWGWLNRWKKVNWQHR-GKPIWATEIWQDIASRVEKLTVKI 645
Query: 123 YWIKGHAGN------QENEKVDRIAR 142
+ H N++VDR A+
Sbjct: 646 RHVDAHIPKSRATEEHHNKQVDRAAK 671
>gi|124360824|gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
Length = 221
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 28/137 (20%), Gaps = 14/137 (10%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
V DG+ G G G+++R + L A
Sbjct: 61 VKINCDGSSVGRHPCGSIGIVIRDSNH---------HFLGAISSNIGNATPLEAEFCAGM 111
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKK-TVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + + + W +
Sbjct: 112 MAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCV---- 167
Query: 128 HAGNQENEKVDRIARNA 144
H + N D +A++
Sbjct: 168 HILREGNMVADALAKHG 184
>gi|50545155|ref|XP_500115.1| YALI0A16082p [Yarrowia lipolytica]
gi|49645980|emb|CAG84046.1| YALI0A16082p [Yarrowia lipolytica]
Length = 171
Score = 39.1 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 6/107 (5%)
Query: 9 VHAYTDGACSGNP---GPGGWGVLLRYKGKEKIISGGEKETTNNRMELM---AAIKALTA 62
+ YTDGACS N GV + + + + + +
Sbjct: 65 LTVYTDGACSNNQSSNARASVGVYFSAGKSDDVSRPVAGSQQSTNGLNWRPSTTVSKVHS 124
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWM 109
+ T S Y + W KWQ NG TS+ + VK
Sbjct: 125 RNDSKNYDIKTGSQYTVNSLNNWGDKWQSNGSVTSNNEPVKTQRHHH 171
>gi|226348602|gb|ACO50620.1| pol protein [Human immunodeficiency virus 1]
Length = 305
Score = 39.1 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVSF 148
KV L W+ H G NE+VD++
Sbjct: 14 KVYLAWVPAHKGIGGNEQVDKLVSAGIRKA 43
>gi|224164518|ref|XP_002338691.1| predicted protein [Populus trichocarpa]
gi|222873212|gb|EEF10343.1| predicted protein [Populus trichocarpa]
Length = 361
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALTA--LKYP 66
+ DGA + G V++ K+ +S E TNN E A I L A
Sbjct: 229 TMFFDGAVNVYGNGAG-AVIISPDKKQYPVSVKLHFECTNNTAEYEACILGLEAALELKI 287
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
K+ +Y DS + + W+T ++K + + + +
Sbjct: 288 KKLDVYGDSMLIICQV--------KGEWQTKEEKLRPYQEYLSTLAKEFEEIRFT----- 334
Query: 127 GHAGNQENEKVDRIARNAAV 146
H G + N D +A AA+
Sbjct: 335 -HLGREGNHFADALATLAAM 353
>gi|15225803|ref|NP_180874.1| glycoside hydrolase family 28 protein / polygalacturonase
(pectinase) family protein [Arabidopsis thaliana]
gi|2924778|gb|AAC04907.1| putative polygalacturonase [Arabidopsis thaliana]
gi|330253698|gb|AEC08792.1| glycosyl hydrolase and polygalacturonase domain-containing protein
[Arabidopsis thaliana]
Length = 664
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 15/132 (11%)
Query: 13 TDGACSG-N-PGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVL 70
DG+ N PG GGW ++R +G + L A+++
Sbjct: 515 VDGSFINGNIPGKGGW--IVRDHNGRYEFAGQAIGNCIDNALECEFQALLMAMQHCWSKG 572
Query: 71 LYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAG 130
+G ++ + LW S + W
Sbjct: 573 YR---RICFEGDNKEMFDLINGLKMHFGAFNWIRDILWWA----SKFEQTQFQW----TN 621
Query: 131 NQENEKVDRIAR 142
Q N+ D +AR
Sbjct: 622 RQNNKPADILAR 633
>gi|288549221|gb|ADC52788.1| pol protein [Simian retrovirus 4]
Length = 870
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G K + +A + A
Sbjct: 458 NALLVFTDGSST------GIAAYTFADSIIKFQTKFSSAQLVELQAFIAVLSAFPNQ--- 508
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ +YTDS+Y+ Q + L + + + + + ++
Sbjct: 509 -PLNIYTDSAYLAHSIPLLETVAQI-----KHISDTAQLFLQCQQLIHNRSTPIYIGHVR 562
Query: 127 GHAGNQ-----ENEKVDRIARN 143
H+G N+ D +A
Sbjct: 563 AHSGLPGPIAQGNQLAD-LATK 583
>gi|288549216|gb|ADC52784.1| pol protein [Simian retrovirus 4]
Length = 870
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G K + +A + A
Sbjct: 458 NALLVFTDGSST------GIAAYTFADSIIKFQTKFSSAQLVELQAFIAVLSAFPNQ--- 508
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ +YTDS+Y+ Q + L + + + + + ++
Sbjct: 509 -PLNIYTDSAYLAHSIPLLETVAQI-----KHISDTAQLFLQCQQLIHNRSTPIYIGHVR 562
Query: 127 GHAGNQ-----ENEKVDRIARN 143
H+G N+ D +A
Sbjct: 563 AHSGLPGPIAQGNQLAD-LATK 583
>gi|306478707|ref|YP_003864102.1| pol protein [Simian retrovirus 4]
gi|285019940|gb|ADC33201.1| pol protein [Simian retrovirus 4]
Length = 870
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66
+ +TDG+ + G K + +A + A
Sbjct: 458 NALLVFTDGSST------GIAAYTFADSIIKFQTKFSSAQLVELQAFIAVLSAFPNQ--- 508
Query: 67 CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIK 126
+ +YTDS+Y+ Q + L + + + + + ++
Sbjct: 509 -PLNIYTDSAYLAHSIPLLETVAQI-----KHISDTAQLFLQCQQLIHNRSTPIYIGHVR 562
Query: 127 GHAGNQ-----ENEKVDRIARN 143
H+G N+ D +A
Sbjct: 563 AHSGLPGPIAQGNQLAD-LATK 583
>gi|77553684|gb|ABA96480.1| Transposable element protein, putative, RnaseH [Oryza sativa
Japonica Group]
gi|125578489|gb|EAZ19635.1| hypothetical protein OsJ_35211 [Oryza sativa Japonica Group]
Length = 335
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y D + N G L I T + + AL VL
Sbjct: 165 YVDASWEHNKACIGIFFHLPATHNALFIKAFCHLTESPLQAELL---ALQLAMEIALVLN 221
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+TD+ ++ + + G D + +W + + H + ++WI H
Sbjct: 222 FTDTIFLMDCSTVVDTAKK--GNFHEDPSHWSLLPIWSQILTFLPGHLLKVHWIPRH--- 276
Query: 132 QENEKVDRIARNA 144
N+ D++A++A
Sbjct: 277 -LNKLADKLAKDA 288
>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
[Acyrthosiphon pisum]
Length = 164
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 116 AQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ W GH G Q NEK D A AA S
Sbjct: 1 MGMDICYMWAPGHCGIQGNEKADLEASKAASS 32
>gi|306478345|gb|ADM89547.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.7 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 12 YTDGACSGNP--GPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
Y DGA + G G+ NR T +
Sbjct: 441 YVDGAANRETKLGKAGY--------------------VTNRGRQKVISLTDTTNQKTELH 480
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
Y + G + ++ + + + K L W+ H
Sbjct: 481 AXYLALQDSGLEVNIVTDSQYALGIIXAQPDKSESELVSQIIEQLIKKEKXYLAWVPAHK 540
Query: 130 GNQENEKVDRIARNAAVS 147
G N++VD++ +
Sbjct: 541 GIXGNKQVDKLVGSGIRK 558
>gi|294868378|ref|XP_002765508.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239865551|gb|EEQ98225.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 368
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 2 DSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE---KIISGGEKETTNNRMELMAAIK 58
+L + DG G G G +L K I+ + R A +
Sbjct: 212 TPSNLPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPGRTNNEAEYE 271
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
AL L+ ++ +G S+ + +K+ ++ + +
Sbjct: 272 ALCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKERAEQAIHGLMD 331
Query: 119 KVDLYWIKGHAGNQENEKVDRIAR 142
++ + WI H N++ D +A
Sbjct: 332 RMQVTWI--HTLRCNNKRADELAT 353
>gi|237827928|gb|ACR21757.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 EASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
E + + + W+ H G N++VD + R
Sbjct: 60 EMIKKEAIYVAWVPAHKGIGGNQEVDHLVRQGIRQ 94
>gi|90265091|emb|CAH67763.1| H0124E07.10 [Oryza sativa Indica Group]
Length = 1761
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 14 DGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC--KV 69
DG+ S G +L + + + +TTNN E A + L K ++
Sbjct: 1225 DGSWSHKG--AGIAAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRL 1282
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L+ TDS V ++ + + + ++++ + V+ H
Sbjct: 1283 LIRTDSKLVVGHVNKSFEAKE--------EGMKRHLEAVRSMEKCFTGITVE------HL 1328
Query: 130 GNQENEKVDRIARNAA 145
+NE+ D +A++AA
Sbjct: 1329 PRDQNEEADALAKSAA 1344
>gi|149590837|ref|XP_001521142.1| PREDICTED: similar to truncated pol/envelope fusion protein,
partial [Ornithorhynchus anatinus]
Length = 228
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 15/137 (10%)
Query: 24 GGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83
G+ + E S T+ + + A+ L + +Y DS Y
Sbjct: 53 AGYATVSSNAVNE---SEPLPSGTSAQKAELMALLRALELGKGLWLNVYMDSKYAFHILH 109
Query: 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK---VDLYWIKGHAGN-----QENE 135
W++ G S VK+ ++ + A K V Y GH + + N
Sbjct: 110 AHGVIWKERGLLRSKGSPVKHSMEILRLLAAVRLPKEIAVICYH--GHQTDDSLVARGNN 167
Query: 136 KVDRIARNAAVSFKNKI 152
D +AR AA K+++
Sbjct: 168 FADSMARQAAS--KDQL 182
>gi|119181104|ref|XP_001241800.1| hypothetical protein CIMG_05696 [Coccidioides immitis RS]
Length = 148
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 82 FSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVD 138
+ K S K + + + + +V WI H G NE+ D
Sbjct: 92 TNNQAAIQAIWNPKHSSGKYILIEAVQALDMLQNLGWEVQFQWIPAHVGVLGNEEAD 148
>gi|319651258|ref|ZP_08005388.1| hypothetical protein HMPREF1013_02000 [Bacillus sp. 2_A_57_CT2]
gi|317397038|gb|EFV77746.1| hypothetical protein HMPREF1013_02000 [Bacillus sp. 2_A_57_CT2]
Length = 218
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 38/150 (25%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEK---------IISGGEKETTNNRMELM 54
+ ++ + DG + G G ++ +K +K
Sbjct: 69 EDPHDITVFFDGGFNKETSQAGLGAVIYFKQGKKKYRVRANELFDEMDNNNEAEYAAIYY 128
Query: 55 AAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ DS V K +++N + E
Sbjct: 129 TLNLLEEMGVHHMTCEFKGDSQVVLKQLEGEWPCYEEN-----------LNRWLDRIEEK 177
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
+ + + EN++ D++A A
Sbjct: 178 IKKLGILPRYRP--IPRNENKEADKLAGQA 205
>gi|87137453|gb|ABD27942.1| pol protein [Simian immunodeficiency virus]
Length = 276
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 45 ETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKN 104
+TTN R EL A + AL +V + TDS YV + +
Sbjct: 11 DTTNQRAELQAVLMALQDSGQ--EVNVVTDSQYVLGILQSHPDHSE-------------S 55
Query: 105 IDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+ E + K+ L W+ H G NE+VD++ +
Sbjct: 56 EIVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLVSSGIRK 98
>gi|332706320|ref|ZP_08426383.1| riibonuclease HI [Lyngbya majuscula 3L]
gi|332354869|gb|EGJ34346.1| riibonuclease HI [Lyngbya majuscula 3L]
Length = 138
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 12/150 (8%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60
M K + DG G +++Y+G+ +S TT N+ E M I L
Sbjct: 1 MTDKSNNLAIIHFDGVSKRRTNQSACGAIIQYQGEVYPVSQYVGFTTQNQTEYMGLILGL 60
Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV 120
G + + + + V ++ +++
Sbjct: 61 QKTLKLGA------KQAKIYGDCELVINQLHGDYMVKNNNLVSFHTRAKTLLDKLDFYEL 114
Query: 121 DLYWIKGHAGNQENEKVDRIARNAAVSFKN 150
+N + D++A + K+
Sbjct: 115 IW------INKTQNLEADQLANDCIDLEKS 138
>gi|291416278|ref|XP_002724372.1| PREDICTED: Gag-Pro-Pol-Env protein-like, partial [Oryctolagus
cuniculus]
Length = 1695
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 20/139 (14%)
Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65
+ V +TDG+ + G + + + + ++ + AI +
Sbjct: 1035 PKAVTVFTDGSSN------GMAAFVADNRSHIFKTSYQ----SAQLVELYAILQVFTQFS 1084
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125
V +YTDS+YV + + TS+ + + L I
Sbjct: 1085 SQAVNIYTDSAYVAHSI--PLLETSPFLKTTSNAMPLFIQIQKLIRERQQPF---YLGHI 1139
Query: 126 KGH-----AGNQENEKVDR 139
+ H + ++ N + D
Sbjct: 1140 RAHTSLPGSLSEGNAQADA 1158
>gi|290782524|gb|ADD62400.1| ribonuclease H [Bacillus sp. BG-CS10]
Length = 223
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 40/146 (27%), Gaps = 22/146 (15%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKII---------SGGEKETTNNRMELMAAIK 58
+ Y DG G G ++ Y+ K S +A +
Sbjct: 73 RLTVYFDGGFDLETRLSGLGCVIYYEQNNKSYRVRKNATVASLTSNNEAEYAALYLALHE 132
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ V + DS V S + + +D+ K +L +
Sbjct: 133 LAQLGAHHLPVTINGDSQVVINQLSGEWACAEDVLNRWADRIDEKLAELGLTPDYQV--- 189
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+EN + D++A A
Sbjct: 190 ----------IPRKENREADQLATQA 205
>gi|301103731|ref|XP_002900951.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101289|gb|EEY59341.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 337
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 3 SKHLREVHAYT-----------DGACSGNPGPGGWGVLLR 31
S+ + + H +T DG GNPGPGG G ++
Sbjct: 111 SEPMVDYHLFTGSEPTKYLLFFDGGSRGNPGPGGSGAVVI 150
>gi|47566076|ref|ZP_00237114.1| ribonuclease H [Bacillus cereus G9241]
gi|47556993|gb|EAL15323.1| ribonuclease H [Bacillus cereus G9241]
Length = 219
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 14/143 (9%)
Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKII-----SGGEKETTNNRMELMAAIKALT 61
+E+ Y DG G G+ + YK K + E NN E + + ++
Sbjct: 72 QEILVYFDGGYDAQTKEAGVGICVYYKKGNKNYRIRRNAYIEGIYDNNEAEYASLLYSMN 131
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
L+ + Q + + + + + +
Sbjct: 132 ILEELGIKYEVVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCEPIS 191
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 192 ---------RKQNKEAHQLATQA 205
>gi|124360982|gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
Length = 175
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKI--ISGGEKETTNNRMELMAAIKALTALKY 65
V DG+ G P G G + R + + T + EL AAI A+
Sbjct: 10 RVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIE 69
Query: 66 PC--KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123
+ L TDS V K FS S+ + W + + + K
Sbjct: 70 YNLRDIWLETDSKLVVKAFSS------------SEHVPWQLRTRWNNCLALAQKIKC--- 114
Query: 124 WIKGHAGNQENEKVDRIARNA 144
+ H + N D +A+N
Sbjct: 115 -VCTHIHREGNAGADSLAKNG 134
>gi|147863318|emb|CAN78356.1| hypothetical protein VITISV_007317 [Vitis vinifera]
Length = 879
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 11/142 (7%)
Query: 6 LREVH---AYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTA 62
+ + Y DGA N G G+LL + I +++ ++
Sbjct: 551 MTSITGCRLYFDGAA--NQSRFGIGILLISPQGDHIPKSVRLAFSDHHRLTNNIVEYEAC 608
Query: 63 LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDL 122
+ L G S + + Q W+T D+K + +
Sbjct: 609 ITGLETTLDLGIRQLEIHGDSNLVIQQTQGIWRTRDEKLKPYHAYLDLLSDGFDVLRYI- 667
Query: 123 YWIKGHAGNQENEKVDRIARNA 144
H EN+ D +A A
Sbjct: 668 -----HLPRAENQFADALATLA 684
>gi|256011176|gb|ACU55444.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ + +
Sbjct: 602 YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQ-----DSGLEXNI 656
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ G
Sbjct: 657 VTDSQYA-------------LGIIHAKPDKSESELVNQIIEQLIKKEKVYLAWVPAXKGI 703
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 704 GGNEQVDKLVSTGIRK 719
>gi|224151890|ref|XP_002194597.1| PREDICTED: similar to polymerase, partial [Taeniopygia guttata]
Length = 1167
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 8/135 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ +TDG+ G V+ + + + + A K+
Sbjct: 714 LTVFTDGS-----GKSHKSVITWKDPESQKWESDIEIVEGSPQIAELAAVVRAFKKFQQP 768
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI--K 126
L TDS+YV Q + + + + E S
Sbjct: 769 FNLVTDSAYVAGIAEQAEHAMLKEIQNKKLFGLLTELIWLISHHEQSYHIMHVWAHTDLP 828
Query: 127 GHAGNQENEKVDRIA 141
G + N + D IA
Sbjct: 829 GAIA-EGNRRADHIA 842
>gi|218191708|gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indica Group]
Length = 521
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 9/137 (6%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L V TDG GN GGWG ++R + + +G L A A
Sbjct: 270 PLNFVKINTDGTYRGNTKQGGWGFVIRDRAGSILQAG-----AGPAAHLQDAFHAEVIAC 324
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + + + + ++ + L +K V S H + +
Sbjct: 325 AAAIKAASERGMSRIELETDSMMLRNAIQDNSFNLSSLGGVILEIKHVILSCFHSFSVSY 384
Query: 125 IKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 385 ----SPRSCNKVAHELA 397
>gi|255955629|ref|XP_002568567.1| Pc21g15570 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590278|emb|CAP96454.1| Pc21g15570 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 301
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARN 143
V+L+ GH G N + DR+AR
Sbjct: 269 HVELHLSPGHRGIPGNSEADRLARR 293
>gi|229029374|ref|ZP_04185459.1| hypothetical protein bcere0028_14650 [Bacillus cereus AH1271]
gi|229160643|ref|ZP_04288637.1| hypothetical protein bcere0009_14340 [Bacillus cereus R309803]
gi|228622842|gb|EEK79674.1| hypothetical protein bcere0009_14340 [Bacillus cereus R309803]
gi|228731934|gb|EEL82831.1| hypothetical protein bcere0028_14650 [Bacillus cereus AH1271]
Length = 219
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNTKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
+ L+ + Q + + + + +
Sbjct: 129 GMNILEEFGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|116309081|emb|CAH66189.1| OSIGBa0144J05.1 [Oryza sativa Indica Group]
Length = 1601
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1377 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1434
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1435 IAISLGIKRLIVRGDSQLVVNQVMKEWSCI----------DDNMMAYRQEVRKLEDKFEG 1484
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1485 LELSHVLRHN----NEAADRLAN 1503
>gi|38346855|emb|CAE02225.2| OSJNBb0015C06.3 [Oryza sativa Japonica Group]
Length = 1253
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ + G GV+L E++ + +N E A +
Sbjct: 890 MPLEKMEYWTMHFDGSKRLSGT--GAGVVLISPTGERLNYVLWIHFSASHNMAEYEALLH 947
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L +++ DS V +
Sbjct: 948 GLRIAISLGIRHLIVRGDSQLVVNQVMKEWSCL----------DDNMAAYRLEVRKLEDK 997
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 998 FDGLELTHVLRHN----NEAADRLAN 1019
>gi|57834031|emb|CAI44627.1| B1168G10.11 [Oryza sativa Japonica Group]
Length = 1489
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 20/146 (13%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ + G GV+L E++ + +N E A +
Sbjct: 1126 MPLEKMEYWTMHFDGSKRLSGT--GAGVVLISPTGERLNYVLWIHFSASHNMAEYEALLH 1183
Query: 59 ALTALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L +++ DS V +
Sbjct: 1184 GLRIAISLGIRHLIVRGDSQLVVNQVMKEWSCL----------DDNMAAYRLEVRKLEDK 1233
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1234 FDGLELTHVLRHN----NEAADRLAN 1255
>gi|38344596|emb|CAE05341.2| OSJNBa0079M09.16 [Oryza sativa Japonica Group]
Length = 1601
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1377 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1434
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1435 IAISLGIKRLIVRGDSQLVVNQVMKEWSCI----------DDNMMAYRQEVRKLEDKFEG 1484
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1485 LELSHVLRHN----NEAADRLAN 1503
>gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group]
Length = 2013
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1434 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1491
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + S
Sbjct: 1492 IAISLGIKRLIVRGDSQLVVNQVMKEW----------SYLDDNMMAYRQEVRKLEDKFDG 1541
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1542 LELSHVLRHN----NEAADRLAN 1560
>gi|76446025|gb|ABA42883.1| pol protein [Human immunodeficiency virus 1]
Length = 405
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 24/71 (33%)
Query: 76 SYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENE 135
+ + G S ++ + E + +V L W+ H G NE
Sbjct: 40 QDSGQEVNIVTDSQYVLGIIHSHPDKSESELVSQIIEELIKKERVYLSWVPAHKGIGGNE 99
Query: 136 KVDRIARNAAV 146
+VD++ +
Sbjct: 100 QVDKLVSSGIR 110
>gi|291237354|ref|XP_002738600.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 443
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
E +TD + + G+G + + + L +
Sbjct: 274 EFELFTDASAT-----LGYGAFYKGHWFANTWPTFITNDPLYSIAWKELLPILLSSLIWG 328
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ + S + + S + + + F AS V + I G
Sbjct: 329 HLWYGLRIRFHCDNISVVQIWKKGS----SSCPRIMQLVRLLFFTAASNNFHVMISHISG 384
Query: 128 HAGNQENEKVDRIARNAAVSFKN 150
N+ D ++R + F+
Sbjct: 385 FN----NDIADSLSRQQILRFQR 403
>gi|77554434|gb|ABA97230.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1807
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIK 58
M + + + DG+ G GV+L E++ + +N E A +
Sbjct: 1256 MPEEKMEYWTMHFDGSKRLTGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLH 1313
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
L L + + T+ ++ V+ ++ +E +
Sbjct: 1314 GLRIAISLSIRRLIVRGYSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELT--- 1370
Query: 119 KVDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1371 ---------HVLRHNNEAADRLAN 1385
>gi|227513362|ref|ZP_03943411.1| ribonuclease HI / cell wall enzyme EBSB [Lactobacillus buchneri
ATCC 11577]
gi|227524505|ref|ZP_03954554.1| ribonuclease HI / cell wall enzyme EBSB [Lactobacillus hilgardii
ATCC 8290]
gi|227083235|gb|EEI18547.1| ribonuclease HI / cell wall enzyme EBSB [Lactobacillus buchneri
ATCC 11577]
gi|227088375|gb|EEI23687.1| ribonuclease HI / cell wall enzyme EBSB [Lactobacillus hilgardii
ATCC 8290]
Length = 129
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 12/136 (8%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTD A + G G+L+ G + ++ N+ E AAI L
Sbjct: 2 IKLYTDAAVNQQSGKAAIGILIIQNGHQIQLNQKIVSMDNHHAEFEAAIGGFQKLIGLGI 61
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
Y + V WI
Sbjct: 62 DPAEFVFYYT--------DSKIVIDSLNKAYAKHFETQTEQLITLQNHFTTVINTWIP-- 111
Query: 129 AGNQENEKVDRIARNA 144
+ +N +A A
Sbjct: 112 --DTQNHGAHNLAMQA 125
>gi|294890537|ref|XP_002773203.1| hypothetical protein Pmar_PMAR009197 [Perkinsus marinus ATCC 50983]
gi|239878227|gb|EER05019.1| hypothetical protein Pmar_PMAR009197 [Perkinsus marinus ATCC 50983]
Length = 164
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 120 VDLYWIKGHAGNQENEKVDRIARNA 144
V W+ H G NE++D +A
Sbjct: 97 VTFAWVGAHFGVHYNERMDELANEG 121
>gi|126307205|ref|XP_001378129.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
Length = 1093
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 20/143 (13%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69
+ DG+ G ++ + + + + +
Sbjct: 666 TIFVDGS------KTGLAAIVMHDYPHTVHTPYQSAQLVELYAALTV----FISLPESPF 715
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
LY+DS YV Q + + + T + + + H + I+ H+
Sbjct: 716 NLYSDSRYVV----QSLLRLEATPVIQPTTATFSLFTKIQQAIR-ARSHPFFIGHIRAHS 770
Query: 130 GNQ-----ENEKVDRIARNAAVS 147
G N+ D+ R AA++
Sbjct: 771 GLPGPLALGNDLADQYTRLAALA 793
>gi|118477136|ref|YP_894287.1| hypothetical protein BALH_1439 [Bacillus thuringiensis str. Al
Hakam]
gi|196038996|ref|ZP_03106303.1| conserved domain protein [Bacillus cereus NVH0597-99]
gi|196046668|ref|ZP_03113892.1| conserved domain protein [Bacillus cereus 03BB108]
gi|225863555|ref|YP_002748933.1| hypothetical protein BCA_1657 [Bacillus cereus 03BB102]
gi|228945299|ref|ZP_04107654.1| hypothetical protein bthur0007_14620 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229183887|ref|ZP_04311103.1| hypothetical protein bcere0004_14540 [Bacillus cereus BGSC 6E1]
gi|118416361|gb|ABK84780.1| possible ribonuclease H [Bacillus thuringiensis str. Al Hakam]
gi|196022601|gb|EDX61284.1| conserved domain protein [Bacillus cereus 03BB108]
gi|196030141|gb|EDX68741.1| conserved domain protein [Bacillus cereus NVH0597-99]
gi|225789470|gb|ACO29687.1| conserved domain protein [Bacillus cereus 03BB102]
gi|228599539|gb|EEK57143.1| hypothetical protein bcere0004_14540 [Bacillus cereus BGSC 6E1]
gi|228814271|gb|EEM60537.1| hypothetical protein bthur0007_14620 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 219
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNAKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|158935165|emb|CAM90421.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEEVDKLVSSGIR 111
>gi|156052791|ref|XP_001592322.1| hypothetical protein SS1G_06563 [Sclerotinia sclerotiorum 1980]
gi|154704341|gb|EDO04080.1| hypothetical protein SS1G_06563 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 701
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 42/128 (32%)
Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67
++ ++DG+ N GG G + + E RM+ + +
Sbjct: 439 DIVIFSDGSKLANGNTGG-GFVGYQDNHKF----CEGSLPLGRMKEVRLL---------- 483
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
S + + + V + W+ G
Sbjct: 484 ---------------------------SKSTGSSQDTFSAFRQLASTWHNGTVHIRWVPG 516
Query: 128 HAGNQENE 135
H NE
Sbjct: 517 HKDVAGNE 524
>gi|158935163|emb|CAM90420.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
+V L W+ H G NE+VD++ +
Sbjct: 84 RVYLSWVPAHKGIGGNEEVDKLVSSGIR 111
>gi|20451040|gb|AAM22011.1|AC093178_6 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430828|gb|AAP52687.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1933
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+ + + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1438 EKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1495
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + T+ ++ V+ ++ +E
Sbjct: 1496 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLEL----- 1548
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1549 -------SHVLRHNNEAADRLAN 1564
>gi|238635481|gb|ACR52732.1| pol protein [Human immunodeficiency virus 1]
gi|238635483|gb|ACR52733.1| pol protein [Human immunodeficiency virus 1]
Length = 204
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 37 RVYLAWVPAHKGIGGNEQVDKLVSSGIRK 65
>gi|229109155|ref|ZP_04238754.1| hypothetical protein bcere0018_14260 [Bacillus cereus Rock1-15]
gi|229144312|ref|ZP_04272718.1| hypothetical protein bcere0012_14730 [Bacillus cereus BDRD-ST24]
gi|228639099|gb|EEK95523.1| hypothetical protein bcere0012_14730 [Bacillus cereus BDRD-ST24]
gi|228674165|gb|EEL29410.1| hypothetical protein bcere0018_14260 [Bacillus cereus Rock1-15]
Length = 219
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLICE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|229149900|ref|ZP_04278128.1| hypothetical protein bcere0011_14580 [Bacillus cereus m1550]
gi|228633581|gb|EEK90182.1| hypothetical protein bcere0011_14580 [Bacillus cereus m1550]
Length = 219
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLICE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|226348586|gb|ACO50612.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAV 146
KV L W+ H G NE+VD++
Sbjct: 463 KVYLAWVPAHKGIGGNEQVDKLVSAGIR 490
>gi|38345984|emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group]
Length = 1847
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 14 DGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC--KV 69
DG+ S G +L + + +TTNN E A + L K ++
Sbjct: 1373 DGSWSHKG--AGIAAVLFSPNGVPIWYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRL 1430
Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129
L+ TDS V ++ + + + ++++ + V+ H
Sbjct: 1431 LIRTDSKLVVGHVNKSFEAKE--------EGMKRHLEAIRSMEKCFTGITVE------HL 1476
Query: 130 GNQENEKVDRIARNAA 145
+NE+ D +A++AA
Sbjct: 1477 PRDQNEEADALAKSAA 1492
>gi|226348608|gb|ACO50623.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE++D++ N
Sbjct: 463 KVYLAWVPAHKGIGGNEQIDKLVSNGIRK 491
>gi|116309523|emb|CAH66588.1| OSIGBa0111E13.6 [Oryza sativa Indica Group]
Length = 820
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 14 DGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DG+ S G +L + + + +TTNN +E A + L K
Sbjct: 448 DGSWSHRG--AGIAAVLCSPNGVPIRYAARLQFDTTNNAVEYEAVLLGLRKAKAQGV--- 502
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ + S+ + ++ ++ + +++ + V+ H
Sbjct: 503 ---QRLLIQTDSKLVAGHVDKSFEAKEEGMKRYLEVVRSMQKCFTGITVE------HLPR 553
Query: 132 QENEKVDRIARNAA 145
+NE+ D +A++AA
Sbjct: 554 DQNEEADALAKSAA 567
>gi|301053235|ref|YP_003791446.1| putative ribonuclease H [Bacillus anthracis CI]
gi|300375404|gb|ADK04308.1| possible ribonuclease H [Bacillus cereus biovar anthracis str. CI]
Length = 219
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNAKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|222641167|gb|EEE69299.1| hypothetical protein OsJ_28580 [Oryza sativa Japonica Group]
Length = 521
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ ++N E A + L
Sbjct: 35 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFLASHNVAEYEALLHGLR 92
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 93 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 142
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 143 LELSHVLRHN----NEAADRLAN 161
>gi|116309829|emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]
Length = 2017
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKET--TNNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ ++N E A + L
Sbjct: 1438 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFLASHNVAEYEALLHGLR 1495
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1496 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1545
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1546 LELSHVLRHN----NEAADRLAN 1564
>gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza sativa Japonica Group]
Length = 2010
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1431 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1488
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1489 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1538
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1539 LELSHVLRHN----NEAADRLAN 1557
>gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa Japonica Group]
Length = 1950
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1371 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1428
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1429 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1478
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1479 LELSHVLRHN----NEAADRLAN 1497
>gi|46391121|gb|AAS90648.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46485807|gb|AAS98432.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2000
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1421 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1478
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1479 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1528
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1529 LELSHVLRHN----NEAADRLAN 1547
>gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa Japonica Group]
Length = 2008
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+++ + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1429 ENMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1486
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V +
Sbjct: 1487 IAISLGIKRLIVRGDSQLVVNQVMKEWSCL----------DDNMMAYRQEVRKLEDKFDG 1536
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
++L + H NE DR+A
Sbjct: 1537 LELSHVLRHN----NEAADRLAN 1555
>gi|238635461|gb|ACR52722.1| pol protein [Human immunodeficiency virus 1]
gi|238635463|gb|ACR52723.1| pol protein [Human immunodeficiency virus 1]
gi|238635465|gb|ACR52724.1| pol protein [Human immunodeficiency virus 1]
gi|238635467|gb|ACR52725.1| pol protein [Human immunodeficiency virus 1]
gi|238635469|gb|ACR52726.1| pol protein [Human immunodeficiency virus 1]
gi|238635471|gb|ACR52727.1| pol protein [Human immunodeficiency virus 1]
gi|238635473|gb|ACR52728.1| pol protein [Human immunodeficiency virus 1]
gi|238635475|gb|ACR52729.1| pol protein [Human immunodeficiency virus 1]
gi|238635477|gb|ACR52730.1| pol protein [Human immunodeficiency virus 1]
gi|238635479|gb|ACR52731.1| pol protein [Human immunodeficiency virus 1]
Length = 204
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V L W+ H G NE+VD++ +
Sbjct: 37 RVYLAWVPAHKGIGGNEQVDKLVSSGIRK 65
>gi|226348642|gb|ACO50640.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
KV L W+ H G NE+VD++
Sbjct: 463 KVYLAWVPAHKGIGGNEQVDKLVSTGIRK 491
>gi|222623806|gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japonica Group]
Length = 521
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 9/137 (6%)
Query: 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALK 64
L V TDG GN GGWG ++R + + +G L A A
Sbjct: 270 PLNFVKINTDGTYRGNTKQGGWGFVIRDRAGSILQAG-----AGPAAHLQDAFHAEVIAC 324
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+ + + + + ++ + L +K V S H + +
Sbjct: 325 AAAIKAASERGMSRIELETDSMMLRNAIQDNSFNLSSLGGVILEIKHVILSCFHSFSVSY 384
Query: 125 IKGHAGNQENEKVDRIA 141
+ N+ +A
Sbjct: 385 ----SPRSCNKVAHELA 397
>gi|326383114|ref|ZP_08204803.1| ribonuclease HI [Gordonia neofelifaecis NRRL B-59395]
gi|326198250|gb|EGD55435.1| ribonuclease HI [Gordonia neofelifaecis NRRL B-59395]
Length = 362
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGK----EKIISGGEKETTNNRMELMAAIKALTALK 64
+ TDG+ G+ L E S + E + AI + A
Sbjct: 138 LLVATDGSVRE--ASMGYAWLSETGQHGFAGELDGSRHTHGNRVVKAE-LCAIGSAIAAI 194
Query: 65 YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
++ + DS+ +W + + ++ + + ++D W
Sbjct: 195 PHRRLTVLVDSTAAIGIMQRWQRGGPDRPTAFMTALMRSSRIRELQARTFTERDRLDFRW 254
Query: 125 IKGHAGNQENE 135
+ GH G NE
Sbjct: 255 VPGHRGVPLNE 265
>gi|196033327|ref|ZP_03100739.1| conserved domain protein [Bacillus cereus W]
gi|218902811|ref|YP_002450645.1| hypothetical protein BCAH820_1694 [Bacillus cereus AH820]
gi|228914275|ref|ZP_04077890.1| hypothetical protein bthur0012_15070 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926731|ref|ZP_04089799.1| hypothetical protein bthur0010_14470 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932981|ref|ZP_04095844.1| hypothetical protein bthur0009_14520 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|229121248|ref|ZP_04250479.1| hypothetical protein bcere0016_15540 [Bacillus cereus 95/8201]
gi|195993761|gb|EDX57717.1| conserved domain protein [Bacillus cereus W]
gi|218538087|gb|ACK90485.1| conserved domain protein [Bacillus cereus AH820]
gi|228662093|gb|EEL17702.1| hypothetical protein bcere0016_15540 [Bacillus cereus 95/8201]
gi|228826582|gb|EEM72353.1| hypothetical protein bthur0009_14520 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832844|gb|EEM78413.1| hypothetical protein bthur0010_14470 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845269|gb|EEM90305.1| hypothetical protein bthur0012_15070 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 219
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ L+E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EELQEILVYFDGGYDVQTKEAGVGICVYYKKGNAKYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
>gi|147797776|emb|CAN69610.1| hypothetical protein VITISV_024102 [Vitis vinifera]
Length = 2037
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 6 LREVH---AYTDGACSGNPGPGGWGVLLRYKGKEKII-SGGEKETTNNRMELMAAIKALT 61
+ + Y DGA N G G+LL + I S + ++R+
Sbjct: 1479 MTSITGWRLYFDGAA--NQSGFGIGILLISPQGDHIPRSVRLAFSDHHRLTNNIVEYEAC 1536
Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121
+ L G S + K Q W+T D+K ++ +
Sbjct: 1537 ITGLETALDLGIR-QLEIHGDSNLVIKQTQGIWRTRDEKLKPYHAYLDLLIDRFDVLRYI 1595
Query: 122 LYWIKGHAGNQENEKVDRIARNA 144
H EN+ D +A A
Sbjct: 1596 ------HLPRAENQFADALATLA 1612
>gi|32487618|emb|CAE05924.1| OSJNBa0034E24.18 [Oryza sativa Japonica Group]
Length = 1257
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 14 DGACSGNPGPGGWGVLL--RYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
DG+ S G +L + + + +TTNN E A + L K
Sbjct: 885 DGSWSHRG--AGIAAVLCSPNGVPIRYAARLQFDTTNNAGEYEAVLLGLRKAKAQGV--- 939
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
+ + S+ + ++ ++ + +++ + V+ H
Sbjct: 940 ---QRLLIQTDSKLVAGHVDKSFEAKEEGMKRYLEVVRSMQKCFTGITVE------HLPR 990
Query: 132 QENEKVDRIARNAA 145
+NE+ D +A++AA
Sbjct: 991 DQNEEADALAKSAA 1004
>gi|168206949|ref|ZP_02632954.1| RNAse H family protein [Clostridium perfringens E str. JGS1987]
gi|170661616|gb|EDT14299.1| RNAse H family protein [Clostridium perfringens E str. JGS1987]
Length = 39
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 111 FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149
K++ +K H+ ++ N++ DR+A+ + FK
Sbjct: 1 MKNRMKYMKINFRKVKSHSNDKWNDEADRLAKIGSGIFK 39
>gi|294951617|ref|XP_002787070.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901660|gb|EER18866.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1367
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 15/150 (10%)
Query: 12 YTDGACSGNPGPG--------GWGVLLRY--KGKEKIISGGEKETTNNRMELMAAIKALT 61
YTDG+ G G G+GV+ E + T + AI
Sbjct: 921 YTDGSKLTVRGTGLFHLATRTGFGVVRYDPGGKPETYEARALPRETTVYQSEVCAIGRAC 980
Query: 62 ALKYP-----CKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASA 116
L+ + D + S + + + + + L +
Sbjct: 981 ELEMSRLSLSEGLEDEGDVEILSDCLSALSNISRATAIQPTTVARSRALALALHERLRRR 1040
Query: 117 QHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
++ + W++ H GN N D AR A
Sbjct: 1041 NRRLVMRWVRAHRGNVPNALADTTARLGAT 1070
>gi|9626967|ref|NP_056880.1| Pr160 [Mouse mammary tumor virus]
gi|2801455|gb|AAC82556.1| Pr160 [Mouse mammary tumor virus]
Length = 1755
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 1 MDSKHL--REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M S + + +TDG+ +G + Y + I + T + E++A I
Sbjct: 1301 MTSTTPLEKGIVIFTDGSANGRS--------VTYIQGREPIIKENTQNTAQQAEIVAVIT 1352
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + LYTDS YV F + S + + ++ + Q
Sbjct: 1353 AFEEVSQ--PFNLYTDSKYVTGLFPEIETA------TLSPRTKIYTELKHLQRLIHKRQE 1404
Query: 119 KVDLYWIKGHAGNQ-----ENEKVDRIAR 142
K + I+GH G N D + R
Sbjct: 1405 KFYIGHIRGHTGLPGPLAQGNAYADSLTR 1433
>gi|40796111|ref|NP_955564.1| p30DU-p13PR-RT-IN [Mouse mammary tumor virus]
Length = 1011
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 1 MDSKHL--REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M S + + +TDG+ +G + Y + I + T + E++A I
Sbjct: 557 MTSTTPLEKGIVIFTDGSANGRS--------VTYIQGREPIIKENTQNTAQQAEIVAVIT 608
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + LYTDS YV F + S + + ++ + Q
Sbjct: 609 AFEEVSQ--PFNLYTDSKYVTGLFPEIETA------TLSPRTKIYTELKHLQRLIHKRQE 660
Query: 119 KVDLYWIKGHAGNQ-----ENEKVDRIAR 142
K + I+GH G N D + R
Sbjct: 661 KFYIGHIRGHTGLPGPLAQGNAYADSLTR 689
>gi|332129|gb|AAA46542.1| Pr160 gag pro pol precursor [Mus musculus]
Length = 1753
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 1 MDSKHL--REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M S + + +TDG+ +G + Y + I + T + E++A I
Sbjct: 1299 MTSTTPLEKGIVIFTDGSANGRS--------VTYIQGREPIIKENTQNTAQQAEIVAVIT 1350
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + LYTDS YV F + S + + ++ + Q
Sbjct: 1351 AFEEVSQ--PFNLYTDSKYVTGLFPEIETA------TLSPRTKIYTELKHLQRLIHKRQE 1402
Query: 119 KVDLYWIKGHAGNQ-----ENEKVDRIAR 142
K + I+GH G N D + R
Sbjct: 1403 KFYIGHIRGHTGLPGPLAQGNAYADSLTR 1431
>gi|130646|sp|P03365|POL_MMTVB RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; Short=RT; Contains:
RecName: Full=Integrase; Short=IN
Length = 899
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 1 MDSKHL--REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIK 58
M S + + +TDG+ +G + Y + I + T + E++A I
Sbjct: 445 MTSTTPLEKGIVIFTDGSANGRS--------VTYIQGREPIIKENTQNTAQQAEIVAVIT 496
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
A + LYTDS YV F + S + + ++ + Q
Sbjct: 497 AFEEVSQ--PFNLYTDSKYVTGLFPEIETA------TLSPRTKIYTELKHLQRLIHKRQE 548
Query: 119 KVDLYWIKGHAGNQ-----ENEKVDRIAR 142
K + I+GH G N D + R
Sbjct: 549 KFYIGHIRGHTGLPGPLAQGNAYADSLTR 577
>gi|290977537|ref|XP_002671494.1| predicted protein [Naegleria gruberi]
gi|284085063|gb|EFC38750.1| predicted protein [Naegleria gruberi]
Length = 720
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 96 TSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146
S + + + L +KGH + EN VD++A+ A
Sbjct: 31 KSYRGDFQGFQEEFFGTIKDKHLNIHLVKVKGHE-DPENIIVDKLAKEGAQ 80
>gi|229043453|ref|ZP_04191163.1| hypothetical protein bcere0027_15010 [Bacillus cereus AH676]
gi|228725831|gb|EEL77078.1| hypothetical protein bcere0027_15010 [Bacillus cereus AH676]
Length = 219
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ +E+ Y DG G G+ + Y + + + E NN E + +
Sbjct: 69 EEPQEILVYFDGGYDVQTKEAGVGICVYYKKGNTNYRIRRNAYIEGIYDNNEAEYASLLY 128
Query: 59 ALTA----LKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA 114
+ V L DS V + + + ++ D+ K + +K +
Sbjct: 129 GMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLICE 188
Query: 115 SAQHKVDLYWIKGHAGNQENEKVDRIARNA 144
++N++ ++A A
Sbjct: 189 P-------------ISRKQNKEAHQLATQA 205
>gi|38346515|emb|CAE03810.2| OSJNBa0027H09.10 [Oryza sativa Japonica Group]
gi|38567795|emb|CAE76081.1| B1340F09.19 [Oryza sativa Japonica Group]
Length = 1570
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETT--NNRMELMAAIKALT 61
+ + + DG+ + G GV+L E++ + +N E A + L
Sbjct: 1315 EKMEHWTMHFDGSKRLSGT--GAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1372
Query: 62 ALKY--PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119
++++ DS V + + T+ ++ V+ ++ +E
Sbjct: 1373 IAVSLGIKRLIVRGDSQLVVNQVMKEWSCL--DDNMTAYRQEVRKLEDKFDGLEL----- 1425
Query: 120 VDLYWIKGHAGNQENEKVDRIAR 142
H NE DR+A
Sbjct: 1426 -------SHILRHNNEAADRLAN 1441
>gi|242786310|ref|XP_002480780.1| hypothetical protein TSTA_035720 [Talaromyces stipitatus ATCC
10500]
gi|218720927|gb|EED20346.1| hypothetical protein TSTA_035720 [Talaromyces stipitatus ATCC
10500]
Length = 314
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIAR 142
V L WI H G NE DR A+
Sbjct: 213 DVTLRWIPAHEGVPGNEAADRAAK 236
>gi|147845162|emb|CAN81618.1| hypothetical protein VITISV_001999 [Vitis vinifera]
Length = 674
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + + G GVLL + I +N + ++ + L
Sbjct: 98 YFDGAANHSG--YGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETALE 155
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
G S + + Q WKT D K V + H
Sbjct: 156 LGIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYT------HLPR 209
Query: 132 QENEKVDRIARNA 144
+N+ D +A A
Sbjct: 210 AQNQFADALATLA 222
>gi|87137484|gb|ABD27957.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNAAVS 147
+V W+ H G NE+VD++ +
Sbjct: 84 RVYSSWVPAHKGIGGNEQVDKLVSSGIRK 112
>gi|322824508|gb|EFZ29897.1| ribonuclease H1, putative [Trypanosoma cruzi]
Length = 95
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 124 WIKGHAGNQENEKVDRIARNAAV 146
++GHAG NE D +A A+
Sbjct: 65 HVRGHAGVHGNEMADHLAVMGAL 87
>gi|242068343|ref|XP_002449448.1| hypothetical protein SORBIDRAFT_05g012526 [Sorghum bicolor]
gi|241935291|gb|EES08436.1| hypothetical protein SORBIDRAFT_05g012526 [Sorghum bicolor]
Length = 171
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ DGA GGWG ++R + I SG + + L K
Sbjct: 14 LKVNVDGAFRDLDKNGGWGYVIRDEEGVVIQSGLGRIMNVGNSLYTELVACLEGAK---A 70
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
VL S ++ + +Q + Q +L + VE+ + + H
Sbjct: 71 VLSLGASQFIMETDAQHVVWAMQGDDFRLATVGGIVHELKVLLVESLSSVRF------AH 124
Query: 129 AGNQENEKVDRIARNA 144
++ N+ +A
Sbjct: 125 VPHECNKVTHELASLG 140
>gi|113205385|gb|ABI34372.1| RNase H family protein [Solanum demissum]
Length = 1033
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 37/135 (27%), Gaps = 16/135 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKII--SGGEKETTNNRMELMAAIKALTALKYPC 67
+ DGA N G G +L + E + TNN E A I L
Sbjct: 403 KLFFDGAA--NKKGVGIGAVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMG 460
Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKG 127
+ G S + Q W+T D K + K
Sbjct: 461 I------QELLVLGDSDLLVHQIQGEWETRDPKLIPYQHCLQDLCRRFVSIKFR------ 508
Query: 128 HAGNQENEKVDRIAR 142
H NE D +A
Sbjct: 509 HISRVHNEIADALAT 523
>gi|212692315|ref|ZP_03300443.1| hypothetical protein BACDOR_01811 [Bacteroides dorei DSM 17855]
gi|237711417|ref|ZP_04541898.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726122|ref|ZP_04556603.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752823|ref|ZP_06088392.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212665192|gb|EEB25764.1| hypothetical protein BACDOR_01811 [Bacteroides dorei DSM 17855]
gi|229435930|gb|EEO46007.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454112|gb|EEO59833.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236009|gb|EEZ21504.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 208
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
D ACSGNPGP + + G+E G T N L + + +Y
Sbjct: 83 VDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIGEFLAIVHALALMKQKNINMPVY 142
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYW 124
+DS + K + +K + I+ +++ + L W
Sbjct: 143 SDSRNALSWV-KQKKCKTKLERTPQTEKLFQMIERAEIWLKENKYTTPLLKW 193
>gi|90787451|gb|ABD97982.1| putative gag-pol protein [Mus musculus]
Length = 1067
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68
+ YTDG+ G G + K++S E + +E + +
Sbjct: 630 IVVYTDGS------KTGIGAYVANG---KVVSKQYNENSPQVVECLV--VLEVLKTFLKP 678
Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128
+ + +DS YV + + + + V + ++ H
Sbjct: 679 LNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSP-----VYITHVRAH 733
Query: 129 AGNQ-----ENEKVDRIARNAAVSFKNKI 152
+G N+ D+ + A + + +
Sbjct: 734 SGLPGPMALGNDLADKATKVVAAALSSPV 762
>gi|188994775|ref|YP_001929027.1| putative ribonuclease H [Porphyromonas gingivalis ATCC 33277]
gi|188594455|dbj|BAG33430.1| putative ribonuclease H [Porphyromonas gingivalis ATCC 33277]
Length = 216
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 13 TDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLY 72
D ACSGNPGP + +L E G + TNN E +A + AL L+ +
Sbjct: 89 VDAACSGNPGPMEYRGVLTASKAEVFRVGPLEGGTNNIGEFLAIVHALALLEKMKRPHYP 148
Query: 73 TDSSYVHKGFSQWIKKWQQNGWKT-SDKKTVKNIDLWMKFVEASAQHKVDLYW 124
S + KK + +T + I+ ++ W
Sbjct: 149 IYSDSMTAISWVRKKKCKTLLARTDKNTAIFDLIERAEHWLSTHRITNPIYKW 201
>gi|49480969|ref|YP_035814.1| hypothetical protein BT9727_1482 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332525|gb|AAT63171.1| possible ribonuclease H [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 219
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 14/146 (9%)
Query: 4 KHLREVHAYTDGACSGNPGPGGWGVLLRY-----KGKEKIISGGEKETTNNRMELMAAIK 58
+ L+E+ Y DG G G+ + Y K + + + E NN E + +
Sbjct: 69 EELQEILVYFDGGYDVQTKEAGVGICVYYKKGNAKYRIRRNAYIEGMYDNNEAEYASLLY 128
Query: 59 ALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH 118
++ L+ + Q + + + + +
Sbjct: 129 SMNILEELGIKYEAVTLRGDSQVVLQQLAGEWPCYDEHLNHYLDQIEQKAKQMKLKLVCE 188
Query: 119 KVDLYWIKGHAGNQENEKVDRIARNA 144
+ ++N++ ++A A
Sbjct: 189 PIS---------RKQNKEAHQLATQA 205
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.119 0.367
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,167,024,350
Number of Sequences: 14124377
Number of extensions: 33084105
Number of successful extensions: 154018
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 11339
Number of HSP's successfully gapped in prelim test: 1041
Number of HSP's that attempted gapping in prelim test: 137332
Number of HSP's gapped (non-prelim): 13014
length of query: 152
length of database: 4,842,793,630
effective HSP length: 115
effective length of query: 37
effective length of database: 3,218,490,275
effective search space: 119084140175
effective search space used: 119084140175
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 75 (33.7 bits)