RPSBLAST alignment for GI: 254780796 and conserved domain: cd06222

>gnl|CDD|119393 cd06222, RnaseH, RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.. Length = 130

 Score =  132 bits (333), Expect = 6e-32
 Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 16/141 (11%)

Query: 10  HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKY-- 65
             YTDG+C GNPGP G GV+LR  G E ++SGG     TTNNR EL+A I+AL       
Sbjct: 1   VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELG 60

Query: 66  PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDLYW 124
             KV +YTDS YV    + W +            K VKN+DLW + +    + HKV   W
Sbjct: 61  GKKVNIYTDSQYVINALTGWYE-----------GKPVKNVDLWQRLLALLKRFHKVRFEW 109

Query: 125 IKGHAGNQENEKVDRIARNAA 145
           + GH+G + NE+ D +A+ AA
Sbjct: 110 VPGHSGIEGNERADALAKEAA 130