RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 1rbv_A 1rbt_A 1rbs_A 1kva_A 1kvb_A ... Length = 155 Score = 154 bits (391), Expect = 5e-39 Identities = 79/140 (56%), Positives = 102/140 (72%) Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65 L++V +T G+ GNPGPGG+G +LRY+G+EK S G TTNNRMELMAAI AL ALK Sbjct: 2 LKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125 +V+L TDS YV +G +QWI W++ GWKT+DKK VKN+DLW + A QH++ W+ Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 Query: 126 KGHAGNQENEKVDRIARNAA 145 KGHAG+ ENE+ D +AR AA Sbjct: 122 KGHAGHPENERADELARAAA 141 >2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis mr-1} PDB: 2zqb_A Length = 158 Score = 124 bits (312), Expect = 7e-30 Identities = 73/140 (52%), Positives = 103/140 (73%) Query: 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY 65 L+ +H +TDG+C GNPGPGG+G+++ YKG K +S G TTNNRMEL+A I AL ALK Sbjct: 4 LKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE 63 Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125 PCK++L +DS Y+ +G WI W++ GW TS++ VKN+DLW + +A+ H++D W+ Sbjct: 64 PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWV 123 Query: 126 KGHAGNQENEKVDRIARNAA 145 KGHAG+ ENE+ D++AR AA Sbjct: 124 KGHAGHAENERCDQLARAAA 143 >3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Length = 146 Score = 124 bits (311), Expect = 9e-30 Identities = 72/140 (51%), Positives = 96/140 (68%), Gaps = 1/140 (0%) Query: 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYP 66 + + YTDGA SGNPG GGWG LL Y K ISG + TTNNRMELMAAIK L ALK P Sbjct: 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKEP 62 Query: 67 CKVLLYTDSSYVHKGFSQ-WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWI 125 +V LY+DS+Y+ ++ W+K+W +NGWKT+ KK V+NIDLW + ++ + H+V + + Sbjct: 63 ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKV 122 Query: 126 KGHAGNQENEKVDRIARNAA 145 KGH+ N N + D +AR A Sbjct: 123 KGHSDNPYNSRADELARLAI 142 >1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Length = 166 Score = 123 bits (309), Expect = 1e-29 Identities = 77/146 (52%), Positives = 100/146 (68%), Gaps = 1/146 (0%) Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60 M+ + V +TDGAC GNPGPGGW LLR+ EK++SGGE TTNNRMEL AAI+ L Sbjct: 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGL 60 Query: 61 TALKYPCKVLLYTDSSYVHKGFSQWIKKWQQ-NGWKTSDKKTVKNIDLWMKFVEASAQHK 119 ALK PC+V LYTDS Y+ K F++ + + GW+T++ K VKN DLW + A A H+ Sbjct: 61 KALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR 120 Query: 120 VDLYWIKGHAGNQENEKVDRIARNAA 145 V +++KGH G+ ENE+VDR AR A Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQA 146 >1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Length = 555 Score = 122 bits (307), Expect = 3e-29 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 18/136 (13%) Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCK 68 YTDG+C+ G G + +GK+K+ + TTN + EL A ALT K Sbjct: 437 ETFYTDGSCNRQSKEGKAGYVT-DRGKDKVKKLEQ--TTNQQAELEAFAMALTDS--GPK 491 Query: 69 VLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGH 128 V + DS YV + ++ + E + + + W+ H Sbjct: 492 VNIIVDSQYVMGIVASQ-------------PTESESKIVNQIIEEMIKKEAIYVAWVPAH 538 Query: 129 AGNQENEKVDRIARNA 144 G N++VD + Sbjct: 539 KGIGGNQEVDHLVSQG 554 >1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans c-125} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Length = 142 Score = 119 bits (299), Expect = 3e-28 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKAL 60 M + + D GNPG + + G+ TNN E +A + L Sbjct: 4 MAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGL 63 Query: 61 TALK-YPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHK 119 LK + +Y++S +W+K + +++T L + E H Sbjct: 64 RYLKERNSRKPIYSNSQTA----IKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHT 119 Query: 120 VDLYWIKGHAGNQENEKVD 138 + +K K D Sbjct: 120 YETPILKWQTDKWGEIKAD 138 >2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Length = 147 Score = 117 bits (295), Expect = 8e-28 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 24/152 (15%) Query: 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKE-KIISGGEKETTNNRM-----ELM 54 MD + E YTDG+ G W GK + K M E+ Sbjct: 1 MDDR--TEYDVYTDGSY--VNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIA 56 Query: 55 AAIKALT-ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVE 113 AA+ A+ A + K+ + D I W WK ++ T L ++ Sbjct: 57 AALYAVKKASQLGVKIRILHD--------YAGIAFWATGEWKAKNEFTQAYAKLMNQY-- 106 Query: 114 ASAQHKVDLYWIKGHAGNQENEKVDRIARNAA 145 + +K H+GN+ N+ VD A++A Sbjct: 107 ---RGIYSFEKVKAHSGNEFNDYVDMKAKSAL 135 >3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 2hb5_A Length = 165 Score = 114 bits (286), Expect = 8e-27 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 18/144 (12%) Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67 + YTDG+ G G + + + T+ R EL+A +AL Sbjct: 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-EGK 81 Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIK 126 K+ +YTDS Y S+ + +KN + + ++A ++ + Sbjct: 82 KLNVYTDSRYAFAT-----------AHVHSEGREIKNKNEILALLKALFLPKRLSIIHCP 130 Query: 127 GHAGNQE-----NEKVDRIARNAA 145 GH N D+ AR AA Sbjct: 131 GHQKGNSAEARGNRMADQAAREAA 154 >3hyf_A Reverse transcriptase/rnaseh; HIV-1, hydrolase, DI-valent metal nucleic acid cleavage mechanism, DI-valent metal coordination; HET: ON1; 1.70A {Human immunodeficiency virus 1} PDB: 1o1w_A 1hrh_A 1rdh_A Length = 150 Score = 113 bits (284), Expect = 1e-26 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71 Y DGA + G G + + +TTN + EL A L +V + Sbjct: 16 YVDGAANRETKLGKAGYVTNRG---RQKVVTLTDTTNQKTELQAIY--LALQDSGLEVNI 70 Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDLYWIKGHAG 130 TDS Y +QWI W++ GWKT+DKK VKN+DL + +E + KV L W+ H G Sbjct: 71 VTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKG 130 Query: 131 NQENEKVDRIARNAA 145 NE+VD++ Sbjct: 131 IGGNEQVDKLVSAGI 145 >2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 2ze2_A* 3bgr_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* 1tvr_A* 2hmi_A* 2vg5_A* 2vg6_A* 2vg7_A* ... Length = 557 Score = 110 bits (276), Expect = 1e-25 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%) Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKV 69 Y DGA + G G + KG++K++ TTN + EL A AL +V Sbjct: 441 TFYVDGAANRETKLGKAGYVT-NKGRQKVVPLTN--TTNQKTELQAIYLALQDS--GLEV 495 Query: 70 LLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHA 129 + TDS Y G + ++ + + + KV L W+ H Sbjct: 496 NIVTDSQYAL-------------GIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHK 542 Query: 130 GNQENEKVDRIAR 142 G NE+VD++ Sbjct: 543 GIGGNEQVDKLVS 555 >3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Length = 141 Score = 103 bits (259), Expect = 1e-23 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 21/143 (14%) Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKI---ISGGEKETTNNRMELMAAIKALTALKY 65 V DG GNPGP G+G ++ + TNN E I L Sbjct: 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 63 Query: 66 --PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDL 122 + + DS V + Q +W+ K + L+++ ++Q +++ Sbjct: 64 LGATEAAVLMDSKLVVE---QMSGRWKV--------KHPDLLKLYVQAQALASQFRRINY 112 Query: 123 YWIKGHAGNQENEKVDRIARNAA 145 W+ N DR+A +A Sbjct: 113 EWVPRA----RNTYADRLANDAM 131 >2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Length = 154 Score = 99.3 bits (246), Expect = 3e-22 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIIS---GGEKETTNNRMELMAAIKALTA--L 63 V YTDG CS N + Y G ++ TN R E+ AA KA+ Sbjct: 8 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 67 Query: 64 KYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLY 123 + K++LYT+S + G + W++ W++NGWKTS K V N + ++ + + Sbjct: 68 QNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 127 Query: 124 WIKGHAGNQENEKVDRIARNAA 145 + GH+G NE+ DR+AR A Sbjct: 128 HVPGHSGFIGNEEADRLAREGA 149 >2hb5_A Reverse transcriptase/ribonuclease H; RNAse H, hydrolase; 1.59A {Moloney murine leukemia virus} Length = 164 Score = 90.3 bits (223), Expect = 2e-19 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 18/144 (12%) Query: 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPC 67 + YTDG+ G G + + + T+ R EL+A +AL Sbjct: 22 DHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKM-AEGK 80 Query: 68 KVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDLYWIK 126 K+ +YTDS Y + + +KN D + ++A ++ + Sbjct: 81 KLNVYTDSRYAFATAHLTSEGKE-----------IKNKDEILALLKALFLPKRLSIIHCP 129 Query: 127 GHAGNQE-----NEKVDRIARNAA 145 GH N D+ AR AA Sbjct: 130 GHQKGHSAEARGNRMADQAARKAA 153 >2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, double-stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii str} Length = 149 Score = 81.7 bits (201), Expect = 6e-17 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 20/144 (13%) Query: 9 VHAYTDGACS-GNPGPG-GWGVLLRYKGKEKIISG-----GEKETTNNRMELMAAIKALT 61 + Y DG C NPG +G ++ ++ G +TNN E I + Sbjct: 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLME 61 Query: 62 ALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVD 121 + Q + K +K K + I L+ K +E + Sbjct: 62 TMLRLGISSPIIKGDS------QLVIKQMNGEYKVKAK---RIIPLYEKAIELKKKLNAT 112 Query: 122 LYWIKGHAGNQENEKVDRIARNAA 145 L W+ EN++ DR++R A Sbjct: 113 LIWVPRE----ENKEADRLSRVAY 132 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.7 bits (81), Expect = 0.004 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 17/35 (48%) Query: 43 EKETTNNRMELMAAIKALTA-LKYPCKVLLYTDSS 76 EK+ A+K L A LK LY D S Sbjct: 18 EKQ----------ALKKLQASLK------LYADDS 36 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.1 bits (69), Expect = 0.11 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Query: 86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKV--DL-YWIKGHAGNQENEKV-DRIA 141 I+KW++ +K ++ +D K +E + K DL W + + E K+ +RIA Sbjct: 87 IRKWRE-----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141 Query: 142 RNA 144 A Sbjct: 142 DKA 144 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.0 bits (62), Expect = 1.0 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 8/28 (28%) Query: 22 GPG---GWGVLLRYKGKE----KIISGG 42 GPG G GVL + K+ ++I G Sbjct: 505 GPGGASGLGVLTH-RNKDGTGVRVIVAG 531 >3g08_A T-cell surface glycoprotein CD1D1; antigen presentation, glycolipid, NKT cells, cell membrane, endosome, glycoprotein, immune response, immunoglobulin domain; HET: NAG FEE PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A* 2akr_A* 3he7_A* 3he6_A* 3gmo_A* 2fik_A* 3gmm_A* 3gmn_A* 3gml_A* 3gmp_A* 3gmq_A* 3gmr_A* 1zhn_A* Length = 285 Score = 27.7 bits (61), Expect = 1.2 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152 W +G NQ+ EK+ + + VSF I Sbjct: 53 WSQGKLSNQQWEKLQHMFQVYRVSFTRDI 81 >1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 Length = 315 Score = 27.3 bits (60), Expect = 1.5 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152 W +G NQ+ EK+ + + VSF I Sbjct: 50 WSQGKLSNQQWEKLQHMFQVYRVSFTRDI 78 >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 Score = 25.6 bits (55), Expect = 4.9 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 30 LRYKGKEKIISGGEKETTNN-RMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKK 88 + KGK + G T + R+ +M AI AL ++ + ++ + + Sbjct: 365 MIIKGKSAL-HGARVNTFGDHRIGMMTAIAALLVADGEVEL---DRAEAINTSYPSFFDD 420 Query: 89 WQQ 91 + Sbjct: 421 LES 423 >3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Length = 158 Score = 24.7 bits (54), Expect = 8.5 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Query: 29 LLRYKGKEKIISGGEKETTNNRMELMAAIKA 59 + KIISGG +T +R L AIK Sbjct: 2 MDEKPAITKIISGG--QTGADRAALDFAIKH 30 >2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, papain-like, EF-hand, structural genomics; 2.20A {Homo sapiens} Length = 326 Score = 24.7 bits (53), Expect = 9.0 Identities = 9/42 (21%), Positives = 18/42 (42%) Query: 53 LMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIKKWQQNGW 94 L+AAI +LT + ++ D + + ++ Q G Sbjct: 87 LLAAIASLTLNEELLYRVVPRDQDFQENYAGIFHFQFWQYGE 128 >3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D, alpha-galactosylceramide, protein receptor complex, cell membrane, disulfide bond, endosome, glycoprotein; HET: NDG BMA NAG AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 1zt4_A* Length = 284 Score = 24.6 bits (53), Expect = 9.3 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 124 WIKGHAGNQENEKVDRIARNAAVSFKNKI 152 W +G +Q+ E + I R SF + Sbjct: 54 WSQGTFSDQQWETLQHIFRVYRSSFTRDV 82 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.131 0.408 Gapped Lambda K H 0.267 0.0491 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,341,122 Number of extensions: 57149 Number of successful extensions: 215 Number of sequences better than 10.0: 1 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 27 Length of query: 152 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 68 Effective length of database: 3,656,734 Effective search space: 248657912 Effective search space used: 248657912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.4 bits)