HHsearch alignment for GI: 254780797 and conserved domain: COG0708

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.83  E-value=4.9e-19  Score=119.89  Aligned_cols=151  Identities=18%  Similarity=0.289  Sum_probs=96.2

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH   84 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (231)
T Consensus         1 mkI~SwNVNgi----------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gq----   60 (261)
T COG0708           1 MKIASWNVNGL----------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQ----   60 (261)
T ss_pred             CEEEEEEHHHH----------------HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEECCC----
T ss_conf             90689830428----------------9899999999987299989997414676668976775279518995276----


Q ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r   85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA  164 (231)
Q Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~  164 (231)
T Consensus        61 KgysGVailsr~~~~~v~~g~~----~~~~~d~e~R~I~a~~~--~--~~v~~~Y~PnG~~~~~~k------~~yKl~f~  126 (261)
T COG0708          61 KGYSGVAILSKKPPDDVRRGFP----GEEEDDEEGRVIEAEFD--G--FRVINLYFPNGSSIGLEK------FDYKLRFL  126 (261)
T ss_pred             CCCCEEEEEECCCCHHHHCCCC----CCCCCCCCCCEEEEEEC--C--EEEEEEECCCCCCCCCCC------HHHHHHHH
T ss_conf             7734489998468302102799----87665434757999979--8--999999727999888710------67899999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             999999997404887899991368884
Q gi|254780797|r  165 TWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       165 ~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
T Consensus       127 ~~l~~~l~~l~~~~~~~vl~GD~NIap  153 (261)
T COG0708         127 DALRNYLEELLKKGKPVVLCGDFNIAP  153 (261)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             999999999874599879966631178