HHsearch alignment for GI: 254780797 and conserved domain: COG0708
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.83 E-value=4.9e-19 Score=119.89 Aligned_cols=151 Identities=18% Similarity=0.289 Sum_probs=96.2
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
T Consensus 1 mkI~SwNVNgi----------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gq---- 60 (261)
T COG0708 1 MKIASWNVNGL----------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQ---- 60 (261)
T ss_pred CEEEEEEHHHH----------------HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEECCC----
T ss_conf 90689830428----------------9899999999987299989997414676668976775279518995276----
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
T Consensus 61 KgysGVailsr~~~~~v~~g~~----~~~~~d~e~R~I~a~~~--~--~~v~~~Y~PnG~~~~~~k------~~yKl~f~ 126 (261)
T COG0708 61 KGYSGVAILSKKPPDDVRRGFP----GEEEDDEEGRVIEAEFD--G--FRVINLYFPNGSSIGLEK------FDYKLRFL 126 (261)
T ss_pred CCCCEEEEEECCCCHHHHCCCC----CCCCCCCCCCEEEEEEC--C--EEEEEEECCCCCCCCCCC------HHHHHHHH
T ss_conf 7734489998468302102799----87665434757999979--8--999999727999888710------67899999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 999999997404887899991368884
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
T Consensus 127 ~~l~~~l~~l~~~~~~~vl~GD~NIap 153 (261)
T COG0708 127 DALRNYLEELLKKGKPVVLCGDFNIAP 153 (261)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999999874599879966631178