HHsearch alignment of GI: 254780797 and MMDB domain: 1hd7_A_
>1hd7_A (A:) DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=105.46 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=81.3
Q ss_pred CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECC
Q ss_conf 6654899887310076777556667666687999999999997518989999727998--89998726232216774035
Q gi|254780797|r 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSN 80 (231)
Q Consensus 3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~ 80 (231)
.+.+|||+||||+++ ...+.+.++++|+..+|||||||||... .....+....++.+. ....
T Consensus 58 ~~~~lrv~T~Nv~~~---------------~~~~~~~i~~~i~~~~pDVi~lQEv~~~~~~~~~~~~~~~~~~~~-~~~~ 121 (318)
T 1hd7_A 58 KPATLKICSWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ-YWSA 121 (318)
T ss_dssp CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEE-EEEC
T ss_pred CCCCEEEEEEECCCH---------------HHHHHCCHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCCCE-EEEE
T ss_conf 998779999983898---------------985554799999767995899985646927689888960799734-9998
Q ss_pred CCCCCCEEEEEE--ECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 787650356886--146410100001221467565544575049999984997899999751168888754300254578
Q gi|254780797|r 81 TDKHAMHTAIVI--RKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY 158 (231)
Q Consensus 81 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~ 158 (231)
......+.++++ +............. ........+... ...+.++++|+...... .....
T Consensus 122 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~ 183 (318)
T 1hd7_A 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAE----FDSFVLVTAYVPNAGRG-------LVRLE 183 (318)
T ss_dssp C-----CCCEEEEESSCCSEEEESCSCG-------GGSSSSCEEEEE----CSSCEEEEEECCCCCGG-------GTTHH
T ss_pred ECCCCCCCCEEEEEECCCCCCCCCCCCC-------CCCHHHEEEEEE----ECCEEEEEEECCCCCCC-------CHHHH
T ss_conf 6687675561379712510122221345-------545002158999----58879999957776676-------17889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 87548999999999740488789999136888462
Q gi|254780797|r 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
.+..+.+.+.+++... ....++|++||||.....
T Consensus 184 ~~~~~~~~l~~~~~~~-~~~~~~i~~GD~N~~~~~ 217 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE 217 (318)
T ss_dssp HHHHHHHHHHHHHHHH-HHHSCEEEEEECSCCCSG
T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCH
T ss_conf 9999888999998886-227753750663446516