HHsearch alignment of GI: 254780797 and MMDB domain: 2j63_A_135-232_440-467
>2j63_A (A:135-232,A:440-467) AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.28 E-value=1.5e-11 Score=79.72 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=59.5
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHC--CCCCEEEEEEC
Q ss_conf 6548998873100767775566676666879999999999975189899997279988--9998726--23221677403
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFP--NDKWDILYSGS 79 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~--~~~~~~~~~~~ 79 (231)
+.+|||+||||+.+. ...+.+.+.++++|++.+||||||||+.... ....... ..+|.+++...
T Consensus 13 ~~~lkIlT~NV~gl~------------~~~k~~~~~l~~~i~~~dpDVIcLQEv~~~~~~~~~~~~~~~~~~y~~~~~~~ 80 (126)
T 2j63_A 13 SRMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC 80 (126)
T ss_dssp TTEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC
T ss_pred CCEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECC
T ss_conf 335799999015677------------76432548999999854998799987652621169777864227862687334
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 5787650356886146410100001221467
Q gi|254780797|r 80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTE 110 (231)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 110 (231)
..+.+....++++++++.......-++....
T Consensus 81 ~~~~g~~GvaIlSR~pi~~~~~~~~~~~~~~ 111 (126)
T 2j63_A 81 AFKRGYSGTRTYMKNSTTASYVVDCFPMPTV 111 (126)
T ss_dssp SSSTTSCCEEEEEECCCCGGGEEEEEECTTC
T ss_pred CCCCCCCCEEEEECCCCCHHHCCEEEECCCC
T ss_conf 5654546679998467647121078875899