HHsearch alignment of GI: 254780797 and MMDB domain: 2j63_A_135-232_440-467

>2j63_A (A:135-232,A:440-467) AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.28  E-value=1.5e-11  Score=79.72  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHC--CCCCEEEEEEC
Q ss_conf             6548998873100767775566676666879999999999975189899997279988--9998726--23221677403
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFP--NDKWDILYSGS   79 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~--~~~~~~~~~~~   79 (231)
                      +.+|||+||||+.+.            ...+.+.+.++++|++.+||||||||+....  .......  ..+|.+++...
T Consensus        13 ~~~lkIlT~NV~gl~------------~~~k~~~~~l~~~i~~~dpDVIcLQEv~~~~~~~~~~~~~~~~~~y~~~~~~~   80 (126)
T 2j63_A           13 SRMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC   80 (126)
T ss_dssp             TTEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC
T ss_pred             CCEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECC
T ss_conf             335799999015677------------76432548999999854998799987652621169777864227862687334


Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf             5787650356886146410100001221467
Q gi|254780797|r   80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTE  110 (231)
Q Consensus        80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  110 (231)
                      ..+.+....++++++++.......-++....
T Consensus        81 ~~~~g~~GvaIlSR~pi~~~~~~~~~~~~~~  111 (126)
T 2j63_A           81 AFKRGYSGTRTYMKNSTTASYVVDCFPMPTV  111 (126)
T ss_dssp             SSSTTSCCEEEEEECCCCGGGEEEEEECTTC
T ss_pred             CCCCCCCCEEEEECCCCCHHHCCEEEECCCC
T ss_conf             5654546679998467647121078875899